Sed0020783 (gene) Chayote v1

Overview


Name	Sed0020783
Type	gene
Organism	Sechium edule (Chayote v1)
Description	Anaphase-promoting complex
Location	LG11: 1383660 .. 1383851 (+)
RNA-Seq Expression	Sed0020783
Synteny	Sed0020783

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCTGCGAAGACAACCCACCAAAATCGAGGTCAAAATCGAAGACAAGGAAGAACTCGAACAAGCTCGCAAACGCGCCGCCGCAGCCGCCGCCACCGACACCACCACCTCCGCCTCCGCCTCCCTCCTCCACAACCTCACTCGCAACAAAGACCCTTCCTCCAAAGCGCAACGCCTGGGCATCTCCTCTTGA

mRNA sequence

ATGCTGCGAAGACAACCCACCAAAATCGAGGTCAAAATCGAAGACAAGGAAGAACTCGAACAAGCTCGCAAACGCGCCGCCGCAGCCGCCGCCACCGACACCACCACCTCCGCCTCCGCCTCCCTCCTCCACAACCTCACTCGCAACAAAGACCCTTCCTCCAAAGCGCAACGCCTGGGCATCTCCTCTTGA

Coding sequence (CDS)

ATGCTGCGAAGACAACCCACCAAAATCGAGGTCAAAATCGAAGACAAGGAAGAACTCGAACAAGCTCGCAAACGCGCCGCCGCAGCCGCCGCCACCGACACCACCACCTCCGCCTCCGCCTCCCTCCTCCACAACCTCACTCGCAACAAAGACCCTTCCTCCAAAGCGCAACGCCTGGGCATCTCCTCTTGA

Protein sequence

MLRRQPTKIEVKIEDKEELEQARKRAAAAAATDTTTSASASLLHNLTRNKDPSSKAQRLGISS

Homology

[Close]

BLAST of Sed0020783 vs. NCBI nr
Match: KAG6586369.1 (Triphosphate tunnel metalloenzyme 3, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 90.5 bits (223), Expect = 5.6e-15
Identity = 54/66 (81.82%), Postives = 58/66 (87.88%), Query Frame = 0


Query: 1  MLRRQPTKIEVKIEDKEELEQARKRAAAAAA-------TDTTTSASASLLHNLTRNKDPS 60
          MLRRQP+KIEVKIEDKEELEQARKRAAAAAA       TDTT+SA+ASLLHNL RNKDP+
Sbjct: 1  MLRRQPSKIEVKIEDKEELEQARKRAAAAAAAAAASTTTDTTSSAAASLLHNLNRNKDPT 60

[Close]

BLAST of Sed0020783 vs. NCBI nr
Match: OVA19190.1 (Anaphase-promoting complex [Macleaya cordata])

HSP 1 Score: 78.6 bits (192), Expect = 2.2e-11
Identity = 44/66 (66.67%), Postives = 56/66 (84.85%), Query Frame = 0


Query: 1  MLRRQPTKIEVKIEDKEELEQARKR---AAAAAATDTTTSASASLLHNLTRNKDPSSKAQ 60
          MLRR+P+KIEVKIEDKEELE+ARKR   ++AA  T TTT+ +A+L+H L RNKDPS+K Q
Sbjct: 1  MLRRKPSKIEVKIEDKEELEEARKRSIASSAATTTTTTTTRAAALIHQLDRNKDPSNKPQ 60

Query: 61 RLGISS 64
          R+G+SS
Sbjct: 61 RIGLSS 66

[Close]

BLAST of Sed0020783 vs. NCBI nr
Match: KAG5564275.1 (hypothetical protein RHGRI_000468 [Rhododendron griersonianum])

HSP 1 Score: 77.0 bits (188), Expect = 6.4e-11
Identity = 46/67 (68.66%), Postives = 59/67 (88.06%), Query Frame = 0


Query: 1  MLRRQPTKIEVKIEDKEELEQARKRAAAAAATDTTTSA---SASLLHNLTR-NKDPSSKA 60
          MLRR+P+KIEVK+EDKEELE+ARKR+AAAAAT +TTS+   +ASLLH+  R +KDPSSK+
Sbjct: 1  MLRRKPSKIEVKVEDKEELEEARKRSAAAAATTSTTSSTTGAASLLHHFDRSSKDPSSKS 60

Query: 61 QRLGISS 64
           R+G+SS
Sbjct: 61 HRIGLSS 67

[Close]

BLAST of Sed0020783 vs. NCBI nr
Match: PNX80228.1 (hypothetical protein L195_g036225 [Trifolium pratense])

HSP 1 Score: 76.6 bits (187), Expect = 8.3e-11
Identity = 43/63 (68.25%), Postives = 52/63 (82.54%), Query Frame = 0


Query: 1  MLRRQPTKIEVKIEDKEELEQARKRAAAAAATDTTTSASASLLHNLTRNKDPSSKAQRLG 60
          MLRR+PTKI+VKIEDKEELE+AR+R AAA  T TTT+ +ASLL    R +DPSSKA R+G
Sbjct: 1  MLRRKPTKIQVKIEDKEELEEARRRNAAATNTTTTTTGAASLLRQFDRAEDPSSKANRIG 60

Query: 61 ISS 64
          +SS
Sbjct: 61 LSS 63

[Close]

BLAST of Sed0020783 vs. NCBI nr
Match: KGN60724.1 (hypothetical protein Csa_019232 [Cucumis sativus])

HSP 1 Score: 76.3 bits (186), Expect = 1.1e-10
Identity = 46/63 (73.02%), Postives = 51/63 (80.95%), Query Frame = 0


Query: 1  MLRRQPTKIEVKIEDKEELEQARKRAAAAAATDTTTSASASLLHNLTRNKDPSSKAQRLG 60
          MLRRQPT I+V+IEDKEELEQ RKR AAA       S  +SLLHNL+RNKDP+SKAQRLG
Sbjct: 1  MLRRQPTMIDVEIEDKEELEQLRKRPAAA-------STYSSLLHNLSRNKDPASKAQRLG 56

Query: 61 ISS 64
          ISS
Sbjct: 61 ISS 56

[Close]

BLAST of Sed0020783 vs. ExPASy TrEMBL
Match: A0A0A0LFB1 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G008650 PE=4 SV=1)

HSP 1 Score: 90.5 bits (223), Expect = 2.7e-15
Identity = 54/68 (79.41%), Postives = 59/68 (86.76%), Query Frame = 0


Query: 1  MLRRQPTKIEVKIEDKEELEQARKRAAAAAATDTT-----TSASASLLHNLTRNKDPSSK 60
          MLRRQP+KIEVKIEDKEELEQARKRAAAAA+T TT     TSA+ SLLHN+ RNKD +SK
Sbjct: 1  MLRRQPSKIEVKIEDKEELEQARKRAAAAASTTTTTTTDATSAAGSLLHNINRNKDQASK 60

Query: 61 AQRLGISS 64
          AQRLGISS
Sbjct: 61 AQRLGISS 68

[Close]

BLAST of Sed0020783 vs. ExPASy TrEMBL
Match: A0A200R928 (Anaphase-promoting complex OS=Macleaya cordata OX=56857 GN=BVC80_8407g9 PE=4 SV=1)

HSP 1 Score: 78.6 bits (192), Expect = 1.1e-11
Identity = 44/66 (66.67%), Postives = 56/66 (84.85%), Query Frame = 0


Query: 1  MLRRQPTKIEVKIEDKEELEQARKR---AAAAAATDTTTSASASLLHNLTRNKDPSSKAQ 60
          MLRR+P+KIEVKIEDKEELE+ARKR   ++AA  T TTT+ +A+L+H L RNKDPS+K Q
Sbjct: 1  MLRRKPSKIEVKIEDKEELEEARKRSIASSAATTTTTTTTRAAALIHQLDRNKDPSNKPQ 60

Query: 61 RLGISS 64
          R+G+SS
Sbjct: 61 RIGLSS 66

[Close]

BLAST of Sed0020783 vs. ExPASy TrEMBL
Match: A0A2K3LNW2 (Uncharacterized protein OS=Trifolium pratense OX=57577 GN=L195_g036225 PE=4 SV=1)

HSP 1 Score: 76.6 bits (187), Expect = 4.0e-11
Identity = 43/63 (68.25%), Postives = 52/63 (82.54%), Query Frame = 0


Query: 1  MLRRQPTKIEVKIEDKEELEQARKRAAAAAATDTTTSASASLLHNLTRNKDPSSKAQRLG 60
          MLRR+PTKI+VKIEDKEELE+AR+R AAA  T TTT+ +ASLL    R +DPSSKA R+G
Sbjct: 1  MLRRKPTKIQVKIEDKEELEEARRRNAAATNTTTTTTGAASLLRQFDRAEDPSSKANRIG 60

Query: 61 ISS 64
          +SS
Sbjct: 61 LSS 63

[Close]

BLAST of Sed0020783 vs. ExPASy TrEMBL
Match: A0A7J6VJG6 (Uncharacterized protein OS=Thalictrum thalictroides OX=46969 GN=FRX31_025150 PE=4 SV=1)

HSP 1 Score: 76.3 bits (186), Expect = 5.3e-11
Identity = 41/61 (67.21%), Postives = 56/61 (91.80%), Query Frame = 0


Query: 1  MLRRQPTKIEVKIEDKEELEQARKRAAAAAATDTTTSASASLLHNLTRNKDPSSKAQRLG 60
          MLRR+P+KIEV++EDKEELE+ARKR  +AAAT+T T+ +AS+LH+L +NKDPS+K+QR+G
Sbjct: 1  MLRRKPSKIEVQLEDKEELEEARKR--SAAATNTATTGAASVLHHLDKNKDPSNKSQRIG 59

Query: 61 I 62
          I
Sbjct: 61 I 59

[Close]

BLAST of Sed0020783 vs. ExPASy TrEMBL
Match: A0A0A0LI59 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G008400 PE=4 SV=1)

HSP 1 Score: 76.3 bits (186), Expect = 5.3e-11
Identity = 46/63 (73.02%), Postives = 51/63 (80.95%), Query Frame = 0


Query: 1  MLRRQPTKIEVKIEDKEELEQARKRAAAAAATDTTTSASASLLHNLTRNKDPSSKAQRLG 60
          MLRRQPT I+V+IEDKEELEQ RKR AAA       S  +SLLHNL+RNKDP+SKAQRLG
Sbjct: 1  MLRRQPTMIDVEIEDKEELEQLRKRPAAA-------STYSSLLHNLSRNKDPASKAQRLG 56

Query: 61 ISS 64
          ISS
Sbjct: 61 ISS 56

The following BLAST results are available for this feature:

BLAST of Sed0020783 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6586369.1	5.6e-15	81.82	Triphosphate tunnel metalloenzyme 3, partial [Cucurbita argyrosperma subsp. soro...	[more]
OVA19190.1	2.2e-11	66.67	Anaphase-promoting complex [Macleaya cordata]	[more]
KAG5564275.1	6.4e-11	68.66	hypothetical protein RHGRI_000468 [Rhododendron griersonianum]	[more]
PNX80228.1	8.3e-11	68.25	hypothetical protein L195_g036225 [Trifolium pratense]	[more]
KGN60724.1	1.1e-10	73.02	hypothetical protein Csa_019232 [Cucumis sativus]	[more]

BLAST of Sed0020783 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Sed0020783 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LFB1	2.7e-15	79.41	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G008650 PE=4 SV=1	[more]
A0A200R928	1.1e-11	66.67	Anaphase-promoting complex OS=Macleaya cordata OX=56857 GN=BVC80_8407g9 PE=4 SV=...	[more]
A0A2K3LNW2	4.0e-11	68.25	Uncharacterized protein OS=Trifolium pratense OX=57577 GN=L195_g036225 PE=4 SV=1	[more]
A0A7J6VJG6	5.3e-11	67.21	Uncharacterized protein OS=Thalictrum thalictroides OX=46969 GN=FRX31_025150 PE=...	[more]
A0A0A0LI59	5.3e-11	73.02	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G008400 PE=4 SV=1	[more]

BLAST of Sed0020783 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 9..29
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 30..63
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 24..63
IPR018860	Anaphase-promoting complex, subunit CDC26	PFAM	PF10471	ANAPC_CDC26	coord: 1..54 e-value: 2.9E-8 score: 34.4

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0020783.1	Sed0020783.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0031145	anaphase-promoting complex-dependent catabolic process
biological_process	GO:0030071	regulation of mitotic metaphase/anaphase transition
cellular_component	GO:0005680	anaphase-promoting complex