Sed0020711 (gene) Chayote v1

Overview


Name	Sed0020711
Type	gene
Organism	Sechium edule (Chayote v1)
Description	glutamic acid-rich protein-like
Location	LG04: 45928576 .. 45929926 (+)
RNA-Seq Expression	Sed0020711
Synteny	Sed0020711

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CTTCCCTTCTTCGATCATCTCTGCAACATTTCTCAAGTAGTTCTTCATTTTCTCTAAGAAGCATTTTCATGGCCGCCGTTGAGGTATCTCAATAATATTATTTTTATTCTTTTTCAATAATTTTTGTTTTTCAACAAACATTTAGAGTAGGAAATTTAAAACACACTTAATACATGGATGGTATTTTCATGTTCGTCCTTGATCGAAATATGTTAATATGCTACTTAATGCAAATTAAACAGCTAAAACAACATAATTCTGCCAACAAAAATAGAACTTTATCGACATTTTGTATAACCTAATAACTATGAAATTAGAAGTTCAAATTCTACCCTTTATTGTAACAATGAAAAAACAACATAATTCTATAATCTAGTAATTGGTTGGAAATTCTCCCCCACCAAATGTTTTGAATTAAAAAATTATATATTTATTAAACCAGAGTAAAATATGAATACCACTATTTTTTCACTAAGTTATTTTTTTTAGTCGTCAACTCTTATTAAAAGATTAAGGTCCCTTTCAAAATGATTTTTCATTAATGCTTTAAAAATGTTAATTTTTTTTAAGTACTTGAAAAGTCCTTATAAACATGCACAAAATTTATCCTCACAACTTCTGTTAAATTGATGATTTAATCTGATATTTGAAAATTTTATTTTTCTATCAAAGCTTCTACTTTCTATTTAGTGTCAAATACGGTTTTGTTAAGCCAACAAAAACAATGGATAGTGATATTAACGTATACCAAATGACTAAGAGATTATGAGTTTAAATTTTCTACCTTTAGTAAAAAATTAAAAAAAAACCATTTTGTTAACTTGTAGACAACCATTTTGTTAACTTGTAGACAGTATCTCCAAATACTGCTTTGCTAGAAGAAACAACTACAAAAGAAGAAATTGAGGAACCATTGACACCCGAAGAGAAGGCGGAGGAGGAAGAGAATGTTAATGTCGAGGTCGTCGAAGAGCCAACGGATTCAGAAGCCGCTACTCCAGGAGAAAATGCTGAAGTAGCGACCGAAGAGGAAGAGGAGGATGAGGAAGAAGAAGATGAGGTTGTGATCCTATCGGACGAAGAGCCGTCCGAGGAATTAGAATTTGAATCAGTTGCAGAGGTAGCGAAAGACGGAAGCGACAACTCCGACGAGTCATCGCCATCGGAAGTTGAAGCTCCGATAGTAAAAGAGGGAAATGAGGAGGAAGATGAGAAGAAGGAAGTGCATGAGGAGAAGACAGATTAATTAAATTAATGGAAATGAGATTATTATGCATGGGGATATGGAGCTTGTGAGTTAAAAGTGAAGATTTGTGTTGGAATTTGTTGATCATTTTAAGTTTGTGTGTGT

mRNA sequence

CTTCCCTTCTTCGATCATCTCTGCAACATTTCTCAAGTAGTTCTTCATTTTCTCTAAGAAGCATTTTCATGGCCGCCGTTGAGACAGTATCTCCAAATACTGCTTTGCTAGAAGAAACAACTACAAAAGAAGAAATTGAGGAACCATTGACACCCGAAGAGAAGGCGGAGGAGGAAGAGAATGTTAATGTCGAGGTCGTCGAAGAGCCAACGGATTCAGAAGCCGCTACTCCAGGAGAAAATGCTGAAGTAGCGACCGAAGAGGAAGAGGAGGATGAGGAAGAAGAAGATGAGGTTGTGATCCTATCGGACGAAGAGCCGTCCGAGGAATTAGAATTTGAATCAGTTGCAGAGGTAGCGAAAGACGGAAGCGACAACTCCGACGAGTCATCGCCATCGGAAGTTGAAGCTCCGATAGTAAAAGAGGGAAATGAGGAGGAAGATGAGAAGAAGGAAGTGCATGAGGAGAAGACAGATTAATTAAATTAATGGAAATGAGATTATTATGCATGGGGATATGGAGCTTGTGAGTTAAAAGTGAAGATTTGTGTTGGAATTTGTTGATCATTTTAAGTTTGTGTGTGT

Coding sequence (CDS)

ATGGCCGCCGTTGAGACAGTATCTCCAAATACTGCTTTGCTAGAAGAAACAACTACAAAAGAAGAAATTGAGGAACCATTGACACCCGAAGAGAAGGCGGAGGAGGAAGAGAATGTTAATGTCGAGGTCGTCGAAGAGCCAACGGATTCAGAAGCCGCTACTCCAGGAGAAAATGCTGAAGTAGCGACCGAAGAGGAAGAGGAGGATGAGGAAGAAGAAGATGAGGTTGTGATCCTATCGGACGAAGAGCCGTCCGAGGAATTAGAATTTGAATCAGTTGCAGAGGTAGCGAAAGACGGAAGCGACAACTCCGACGAGTCATCGCCATCGGAAGTTGAAGCTCCGATAGTAAAAGAGGGAAATGAGGAGGAAGATGAGAAGAAGGAAGTGCATGAGGAGAAGACAGATTAA

Protein sequence

MAAVETVSPNTALLEETTTKEEIEEPLTPEEKAEEEENVNVEVVEEPTDSEAATPGENAEVATEEEEEDEEEEDEVVILSDEEPSEELEFESVAEVAKDGSDNSDESSPSEVEAPIVKEGNEEEDEKKEVHEEKTD

Homology

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BLAST of Sed0020711 vs. NCBI nr
Match: KAG6572249.1 (hypothetical protein SDJN03_28977, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 94.0 bits (232), Expect = 1.1e-15
Identity = 86/146 (58.90%), Postives = 99/146 (67.81%), Query Frame = 0


Query: 1   MAAVETVSPNTALLE------ETTTKEEIEEP----LTPEEKAEEEENVNVEVVEEPTDS 60
           MA VET+SPN ALLE      ET  KE +EEP    +TPEEKAE+EE+V VE V EP  S
Sbjct: 1   MATVETISPNAALLEETNVLKETAAKEGVEEPAPPAVTPEEKAEKEESVEVETVAEPPHS 60

Query: 61  EAATPGENAEVATEEEEEDEEEEDEVVILSDEEPSEELEFESVAEVAKDGSDNSDESSPS 120
           EA    E  E ATEEEEE EEEE+EVVIL+DE  +EE E E+VAEV K+ SD+ DESS  
Sbjct: 61  EATVLNEKVE-ATEEEEEVEEEEEEVVILTDESKAEE-EPEAVAEVTKEESDSPDESSAP 120

Query: 121 EVEAPIVKEGNEEEDEKKEVHEEKTD 137
           E +AP      EEEDEKKE   EKT+
Sbjct: 121 EADAP----ATEEEDEKKEAPAEKTE 140

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BLAST of Sed0020711 vs. NCBI nr
Match: XP_023511645.1 (glutamic acid-rich protein-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 92.4 bits (228), Expect = 3.2e-15
Identity = 83/140 (59.29%), Postives = 98/140 (70.00%), Query Frame = 0


Query: 6   TVSPNTALLE------ETTTKEEIEEP----LTPEEKAEEEENVNVEVVEEPTDSEAATP 65
           T+SPN ALLE      ET  KEE+EEP    +TPEEKAE+EE+V VE V EP  SEAA  
Sbjct: 4   TISPNAALLEETNVLKETAAKEEVEEPAPPAVTPEEKAEKEESVEVETVAEPPHSEAAVS 63

Query: 66  GENAEVATEEEEEDEEEEDEVVILSDEEPSEELEFESVAEVAKDGSDNSDESSPSEVEAP 125
            E  E  TEEEEE EEEE+EV+IL+DE  +EE E E+VAEVAK+ SD+ DESS  E +AP
Sbjct: 64  NEKVE-PTEEEEEVEEEEEEVMILTDESEAEE-EPEAVAEVAKEESDSPDESSAPEADAP 123

Query: 126 IVKEGNEEEDEKKEVHEEKT 136
             +E  +EEDEKKE   EKT
Sbjct: 124 AAEEA-KEEDEKKEAPAEKT 140

[Close]

BLAST of Sed0020711 vs. NCBI nr
Match: XP_022968885.1 (glutamic acid-rich protein-like [Cucurbita maxima])

HSP 1 Score: 90.1 bits (222), Expect = 1.6e-14
Identity = 82/142 (57.75%), Postives = 99/142 (69.72%), Query Frame = 0


Query: 5   ETVSPNTALLE------ETTTKEEIEEP----LTPEEKAEEEENVNVEVVEEPTDSEAAT 64
           +T+SPN ALLE      ET  KEE+EEP    +TPEEKAE+EE+V VE V EP  S+A  
Sbjct: 9   KTISPNAALLEETNVLKETAAKEEVEEPAQPAVTPEEKAEKEESVEVETVAEPPHSKAGV 68

Query: 65  PGENAEVATEEEEEDEEEEDEVVILSDEEPSEELEFESVAEVAKDGSDNSDESSPSEVEA 124
             E  E ATEEEEE EEEE+EVVIL+DE  +EE E E+VAEVAK+ SD+ +ESS  E + 
Sbjct: 69  LNEKVE-ATEEEEEVEEEEEEVVILTDESEAEE-EPEAVAEVAKEESDSPNESSAPEADT 128

Query: 125 PIVKEGNEEEDEKKEVHEEKTD 137
           P  KE  +EEDEKKE   EKT+
Sbjct: 129 PAAKEA-KEEDEKKEAPAEKTE 147

[Close]

BLAST of Sed0020711 vs. NCBI nr
Match: KAG7011879.1 (hypothetical protein SDJN02_26786, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 82.8 bits (203), Expect = 2.5e-12
Identity = 80/146 (54.79%), Postives = 96/146 (65.75%), Query Frame = 0


Query: 1   MAAVETVSPNTALLE------ETTTKEEIEEP----LTPEEKAEEEENVNVEVVEEPTDS 60
           M    T+SPN ALLE      ET  +E +EEP    +TPE KAE+EE+V VE V EP  S
Sbjct: 1   MGPTLTISPNAALLEETNVLKETAAREGVEEPAPPAVTPEGKAEKEESVEVETVAEPPHS 60

Query: 61  EAATPGENAEVATEEEEEDEEEEDEVVILSDEEPSEELEFESVAEVAKDGSDNSDESSPS 120
           EA    E  E ATEEEEE EEEE+EVVIL+DE  +EE E E+VAEV K+ SD+ DES   
Sbjct: 61  EATVLNEKVE-ATEEEEEVEEEEEEVVILTDESKAEE-EPEAVAEVTKEESDSPDESLAP 120

Query: 121 EVEAPIVKEGNEEEDEKKEVHEEKTD 137
           E +AP  +E  +EEDEKKE   EKT+
Sbjct: 121 EADAPATEEA-KEEDEKKEAPAEKTE 143

[Close]

BLAST of Sed0020711 vs. NCBI nr
Match: XP_023529821.1 (neurofilament medium polypeptide-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 79.7 bits (195), Expect = 2.1e-11
Identity = 75/137 (54.74%), Postives = 87/137 (63.50%), Query Frame = 0


Query: 1   MAAVETVSPNTALLEETTTKEEIEEPLTPEEKAEEEENVNVEVVEEPTDSEAATPGENAE 60
           MAAVE V P TAL EET      EE   PEEKAEEEE+V VEV                 
Sbjct: 1   MAAVEPVPPTTALPEETAVVN--EEAAAPEEKAEEEESVEVEVA---------------- 60

Query: 61  VATEEEEEDEEEEDEVVILSDEE-PSEELEFESVAEVAKDGSDNSDESSPSEVEAPIVKE 120
                  ++EEEE+EVVILSDEE  +EELE  S+AEVAK+ +D SDESS  E EAP+ +E
Sbjct: 61  ------AKEEEEEEEVVILSDEEGAAEELESLSIAEVAKEENDGSDESSAPEAEAPVEEE 112

Query: 121 GNEEEDEKKEVHEEKTD 137
           G +EEDEKKEV EEKT+
Sbjct: 121 G-KEEDEKKEVSEEKTE 112

[Close]

BLAST of Sed0020711 vs. ExPASy TrEMBL
Match: A0A6J1HYF7 (glutamic acid-rich protein-like OS=Cucurbita maxima OX=3661 GN=LOC111468066 PE=4 SV=1)

HSP 1 Score: 90.1 bits (222), Expect = 7.6e-15
Identity = 82/142 (57.75%), Postives = 99/142 (69.72%), Query Frame = 0


Query: 5   ETVSPNTALLE------ETTTKEEIEEP----LTPEEKAEEEENVNVEVVEEPTDSEAAT 64
           +T+SPN ALLE      ET  KEE+EEP    +TPEEKAE+EE+V VE V EP  S+A  
Sbjct: 9   KTISPNAALLEETNVLKETAAKEEVEEPAQPAVTPEEKAEKEESVEVETVAEPPHSKAGV 68

Query: 65  PGENAEVATEEEEEDEEEEDEVVILSDEEPSEELEFESVAEVAKDGSDNSDESSPSEVEA 124
             E  E ATEEEEE EEEE+EVVIL+DE  +EE E E+VAEVAK+ SD+ +ESS  E + 
Sbjct: 69  LNEKVE-ATEEEEEVEEEEEEVVILTDESEAEE-EPEAVAEVAKEESDSPNESSAPEADT 128

Query: 125 PIVKEGNEEEDEKKEVHEEKTD 137
           P  KE  +EEDEKKE   EKT+
Sbjct: 129 PAAKEA-KEEDEKKEAPAEKTE 147

[Close]

BLAST of Sed0020711 vs. ExPASy TrEMBL
Match: A0A6J1EXC5 (X-linked retinitis pigmentosa GTPase regulator-interacting protein 1-like OS=Cucurbita moschata OX=3662 GN=LOC111437032 PE=4 SV=1)

HSP 1 Score: 79.7 bits (195), Expect = 1.0e-11
Identity = 76/137 (55.47%), Postives = 88/137 (64.23%), Query Frame = 0


Query: 1   MAAVETVSPNTALLEETTTKEEIEEPLTPEEKAEEEENVNVEVVEEPTDSEAATPGENAE 60
           MAAVE V P TAL EE       EE   PEEKAEEEE+V VEV                 
Sbjct: 1   MAAVEPVPPTTALPEEAAIVN--EEAAAPEEKAEEEESVEVEV----------------- 60

Query: 61  VATEEEEEDEEEEDEVVILSDEE-PSEELEFESVAEVAKDGSDNSDESSPSEVEAPIVKE 120
               +EEE+EEEE+EVVILSDEE  +EELE  S+AEVAK+ +D SDE S  E EAP+ +E
Sbjct: 61  --AAKEEEEEEEEEEVVILSDEEGAAEELESLSIAEVAKEENDGSDEPSAPEAEAPVEEE 115

Query: 121 GNEEEDEKKEVHEEKTD 137
           G +EEDEKKEV EEKT+
Sbjct: 121 G-KEEDEKKEVSEEKTE 115

[Close]

BLAST of Sed0020711 vs. ExPASy TrEMBL
Match: A0A5A7UTC3 (Glutamic acid-rich protein-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold201G00150 PE=4 SV=1)

HSP 1 Score: 75.5 bits (184), Expect = 1.9e-10
Identity = 76/151 (50.33%), Postives = 95/151 (62.91%), Query Frame = 0


Query: 1   MAAVETVSPNTALLEETT------TKEEIEEP----LTPEEKAEE-EENVNVEVVEEPTD 60
           MA VETVSPN  LLE+TT       KEE+EE     +T +EK EE EE+V VEVV+E + 
Sbjct: 1   MATVETVSPNAVLLEDTTIVKETNAKEEVEEQSSPNITSKEKVEEKEESVKVEVVDERSS 60

Query: 61  ---SEAATPGENAEVATEEEEEDEEEEDEVVILSDEEPSEE-LEFESVAEVAKDGSDNSD 120
              SEA    E  E   ++EEE+EEEEDEVVIL+D++  EE LE +  AEVAK+ +D  D
Sbjct: 61  DDYSEAVVSNEKVEATADQEEEEEEEEDEVVILTDDDEVEEYLESKEAAEVAKEENDKPD 120

Query: 121 ESSPSEVEAPIVKEGNEEEDEKKEVHEEKTD 137
           E S       +V E  EE+DEKKE  EEK +
Sbjct: 121 EPSVVAEAKALVSEEAEEKDEKKEAREEKKE 151

[Close]

BLAST of Sed0020711 vs. ExPASy TrEMBL
Match: A0A6J1JFZ3 (cyclin-dependent kinase 11A-like OS=Cucurbita maxima OX=3661 GN=LOC111486534 PE=4 SV=1)

HSP 1 Score: 75.1 bits (183), Expect = 2.5e-10
Identity = 74/137 (54.01%), Postives = 87/137 (63.50%), Query Frame = 0


Query: 1   MAAVETVSPNTALLEETTTKEEIEEPLTPEEKAEEEENVNVEVVEEPTDSEAATPGENAE 60
           MAAVE V P TAL EET      EE   PEEKAEEEE+V VEV                 
Sbjct: 1   MAAVEAVPPTTALPEETAVVN--EEVAAPEEKAEEEESVEVEVA---------------- 60

Query: 61  VATEEEEEDEEEEDEVVILSDEEPS-EELEFESVAEVAKDGSDNSDESSPSEVEAPIVKE 120
                +EE+EEEE++VVILSDEE + EELE  S+AEVAK+ +  SDESS  E EAP+ +E
Sbjct: 61  ----AKEEEEEEEEKVVILSDEEAAEEELESLSIAEVAKEENVGSDESSVPEAEAPVEEE 114

Query: 121 GNEEEDEKKEVHEEKTD 137
             +EEDEKKEV EEKT+
Sbjct: 121 A-KEEDEKKEVSEEKTE 114

[Close]

BLAST of Sed0020711 vs. ExPASy TrEMBL
Match: A0A1S3C185 (glutamic acid-rich protein-like OS=Cucumis melo OX=3656 GN=LOC103495666 PE=4 SV=1)

HSP 1 Score: 72.8 bits (177), Expect = 1.3e-09
Identity = 75/151 (49.67%), Postives = 94/151 (62.25%), Query Frame = 0


Query: 1   MAAVETVSPNTALLEETT------TKEEIEEP----LTPEEKAEE-EENVNVEVVEEPTD 60
           MA VETVSPN  LLE+TT       KEE+EE     +T +EK EE EE+V VEVV+E + 
Sbjct: 1   MATVETVSPNAVLLEDTTIVKETNAKEEVEEQSSPNITSKEKVEEKEESVKVEVVDERSS 60

Query: 61  ---SEAATPGENAEVATEEEEEDEEEEDEVVILSDEEPSEE-LEFESVAEVAKDGSDNSD 120
              SEA    E  E   ++EEE+EEEEDEVVIL+D++  EE LE +  A VAK+ +D  D
Sbjct: 61  DDYSEAVVSNEKVEATADQEEEEEEEEDEVVILTDDDEVEEYLESKEAAGVAKEENDKPD 120

Query: 121 ESSPSEVEAPIVKEGNEEEDEKKEVHEEKTD 137
           E S       +V E  EE+DEKKE  EEK +
Sbjct: 121 EPSVVAEAKALVSEEAEEKDEKKEAREEKKE 151

The following BLAST results are available for this feature:

BLAST of Sed0020711 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6572249.1	1.1e-15	58.90	hypothetical protein SDJN03_28977, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_023511645.1	3.2e-15	59.29	glutamic acid-rich protein-like [Cucurbita pepo subsp. pepo]	[more]
XP_022968885.1	1.6e-14	57.75	glutamic acid-rich protein-like [Cucurbita maxima]	[more]
KAG7011879.1	2.5e-12	54.79	hypothetical protein SDJN02_26786, partial [Cucurbita argyrosperma subsp. argyro...	[more]
XP_023529821.1	2.1e-11	54.74	neurofilament medium polypeptide-like [Cucurbita pepo subsp. pepo]	[more]

BLAST of Sed0020711 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Sed0020711 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1HYF7	7.6e-15	57.75	glutamic acid-rich protein-like OS=Cucurbita maxima OX=3661 GN=LOC111468066 PE=4...	[more]
A0A6J1EXC5	1.0e-11	55.47	X-linked retinitis pigmentosa GTPase regulator-interacting protein 1-like OS=Cuc...	[more]
A0A5A7UTC3	1.9e-10	50.33	Glutamic acid-rich protein-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_...	[more]
A0A6J1JFZ3	2.5e-10	54.01	cyclin-dependent kinase 11A-like OS=Cucurbita maxima OX=3661 GN=LOC111486534 PE=...	[more]
A0A1S3C185	1.3e-09	49.67	glutamic acid-rich protein-like OS=Cucumis melo OX=3656 GN=LOC103495666 PE=4 SV=...	[more]

BLAST of Sed0020711 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25

Position :

Zoom :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 62..82
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 28..44
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 116..136
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..136
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 60..90
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 91..105

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0020711.1	Sed0020711.1	mRNA