![](http://cucurbitgenomics.org/sites/default/files/styles/slideshow/public/carousel/101322_web.jpg?itok=EG-G51x6)
Sed0020618 (gene) Chayote v1
Overview
Sequences
The following sequences are available for this feature:
Legend: polypeptideCDSexon Hold the cursor over a type above to highlight its positions in the sequence below.ATGACCCTTCTTCGTGGACAACGAGCTATATTTGTAGACTTGGCATCAGGATCAGGAAAGTTTGATGTCGTCATGCCATGGCTTTCTGCCCCAATTTGGTGTAGGACTGTGGACAATAATTGTCACACTTGTACGTGATACACATTCACTTCACCCACATTGAGATTTATAAAAACAAATATTATATAATTCAACAAAATTTGGGGTGGGAAGAGACGGAAAGATTCTAACTTATAATCTCTTAATTACTAAGTTATACAAAATTTGGGGTGGGAAGAGACGGAAAGATTCTAACTTCAATCATAAAAGAAAAAAATTTACAATACATAGATGTCAATTAATACAAATTAAATCACTAGATAGATGTCAATTTCTACGATCGTGGGTTCGATCTCTAGAATCAATATTTGTAATCTCCTTTCTCTCAACTTATATTAAAAAAAAGTTTTATTGAAAGGTGGGTTCGATCTCTAGAATCGATATTTATAATCTTCTTTCTCTCAACTTATACTAAAAAAAAGTTTTATTGAAAGGTGAGTTCGATCTCTAGAATCGATATTTGTAATCTCCTTTCTCTAAACTTATACTAAAAAAAAAGTTTTACTGAGAGGTCCTAAGAAAATATGTTAAAATATCGTTGAGAAGAAGAAATACCTTGAATCCTCACCCTTAGAATTTATAAGTAAAGTTTTAACACATGCCTTCATGACATAAACTGGAAATGCAGAAGACCCATTGGCATAATTTGACCAAAACCTTAATCTGGCAACTTATACCAACTCCGCCATCTCAACAATTTACTTATTAAACGGGTATATATAATATTATAGCAAAATAATATTTATCATTAACCAATAAAAACTCATATAAATTTCATTTACATATATTTTTGTGAGTGACGGAATAGCTTACACGCAACTATGCTCTTTCCGAAAAATAAAAAAAGATGAGCAATTTTCTTTTTAGTGGGATTTGAATTCACACTCTTTCAAACTAGAACTATACTGGCACTTTAAACCAACTTTACCATCTCAACAAATTACATCATATGTGAGTATATATAATTGTATTATTGTAAGTAATATTTTACCATGAACCAATAAAACTCATATGGATACAAAATAATACAAATGAAGAATACCTTTTACAATTTCTTTTTTCCTTAAAGATGTTAAAAATGATACATTATAGAGATGAAAGAAAACAACATTTTTTTATACAAGAAAAATATAAAAGGGAATTTGTAATGCCTCATATTTTAGGAATTTAATCATAGGCAATAATTTCCCTTTTGATATTTAATTACTAAAGAGTATCAATTCCGCAACATCTTCGCTTTCATTTGTTTCCGTTTTTTTAGATTCGTGTTGCGTTTAGCCTTCACATGTTGTGCCTCGATTTGCATGCTAGTTGAGTTCATTATTGTAATTGGTTGCTCGTTCGCTACAAGGTTATTCGGAGTGGTGCTTCATAAACGATTTGTTTGGAATGGTATGTCGATCATGTTGTTGTTGATCATGTTGTCGATCATGTTGTCGATCAGGAATGAAAAAAAGAAAGTCTTTGAAAAAATAGGGATTCCCCTTCTCCACTTGTTGTGTCTTTTGTCTTCACTACATCTTGTGGCTTATAAGTACACAAATCATTAGAAATCCTTTAAAAAGCACCAACTGTTTGCTCTTTGCCACACAAATCATTAACAAAATCTTCCCTTTGAATTAATTGTGTATTTGAGGTTAAGCTTTAAAATTAAATGTCAGCTCATGGCTGTGGGGTTTGGAGTGCAAAGGAAAACAAGGCATTTGAAAAGGCTTTGGCAATGTATGATAAAGACACAGCTGATCGATGGCTGAATGTTGCAAAGGCCATTGGTGGAAACACTGAAGAGGAAGTTAAACATATTGAGTCTGGCAAAGTTCCCTTTCTCTATCGAACCTCGTGA ATGACCCTTCTTCGTGGACAACGAGCTATATTTGTAGACTTGGCATCAGGATCAGGAAAGTTTGATGTCGTCATGCCATGGCTTTCTGCCCCAATTTGGTGTAGGACTGTGGACAATAATTGTCACACTTCTCATGGCTGTGGGGTTTGGAGTGCAAAGGAAAACAAGGCATTTGAAAAGGCTTTGGCAATGTATGATAAAGACACAGCTGATCGATGGCTGAATGTTGCAAAGGCCATTGGTGGAAACACTGAAGAGGAAGTTAAACATATTGAGTCTGGCAAAGTTCCCTTTCTCTATCGAACCTCGTGA ATGACCCTTCTTCGTGGACAACGAGCTATATTTGTAGACTTGGCATCAGGATCAGGAAAGTTTGATGTCGTCATGCCATGGCTTTCTGCCCCAATTTGGTGTAGGACTGTGGACAATAATTGTCACACTTCTCATGGCTGTGGGGTTTGGAGTGCAAAGGAAAACAAGGCATTTGAAAAGGCTTTGGCAATGTATGATAAAGACACAGCTGATCGATGGCTGAATGTTGCAAAGGCCATTGGTGGAAACACTGAAGAGGAAGTTAAACATATTGAGTCTGGCAAAGTTCCCTTTCTCTATCGAACCTCGTGA MTLLRGQRAIFVDLASGSGKFDVVMPWLSAPIWCRTVDNNCHTSHGCGVWSAKENKAFEKALAMYDKDTADRWLNVAKAIGGNTEEEVKHIESGKVPFLYRTS Homology
BLAST of Sed0020618 vs. NCBI nr
Match: XP_008447025.1 (PREDICTED: protein RADIALIS-like 1 [Cucumis melo]) HSP 1 Score: 107.1 bits (266), Expect = 9.4e-20 Identity = 53/72 (73.61%), Postives = 57/72 (79.17%), Query Frame = 0
BLAST of Sed0020618 vs. NCBI nr
Match: KAA0036170.1 (protein RADIALIS-like 1 [Cucumis melo var. makuwa]) HSP 1 Score: 105.5 bits (262), Expect = 2.7e-19 Identity = 52/72 (72.22%), Postives = 57/72 (79.17%), Query Frame = 0
BLAST of Sed0020618 vs. NCBI nr
Match: XP_004151116.1 (protein RADIALIS-like 1 [Cucumis sativus] >KGN44075.1 hypothetical protein Csa_020265 [Cucumis sativus]) HSP 1 Score: 104.0 bits (258), Expect = 8.0e-19 Identity = 51/72 (70.83%), Postives = 57/72 (79.17%), Query Frame = 0
BLAST of Sed0020618 vs. NCBI nr
Match: XP_022952073.1 (protein RADIALIS-like 1 [Cucurbita moschata] >XP_022972518.1 protein RADIALIS-like 1 [Cucurbita maxima] >XP_023554705.1 protein RADIALIS-like 1 [Cucurbita pepo subsp. pepo] >KAG6572043.1 Transcription factor RADIALIS, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 100.1 bits (248), Expect = 1.1e-17 Identity = 49/72 (68.06%), Postives = 56/72 (77.78%), Query Frame = 0
BLAST of Sed0020618 vs. NCBI nr
Match: KAA0036150.1 (protein RADIALIS-like 1 [Cucumis melo var. makuwa] >TYK01768.1 protein RADIALIS-like 1 [Cucumis melo var. makuwa]) HSP 1 Score: 94.7 bits (234), Expect = 4.8e-16 Identity = 46/72 (63.89%), Postives = 53/72 (73.61%), Query Frame = 0
BLAST of Sed0020618 vs. ExPASy Swiss-Prot
Match: Q58FS3 (Transcription factor RADIALIS OS=Antirrhinum majus OX=4151 GN=RAD PE=1 SV=1) HSP 1 Score: 80.1 bits (196), Expect = 1.6e-14 Identity = 42/66 (63.64%), Postives = 48/66 (72.73%), Query Frame = 0
BLAST of Sed0020618 vs. ExPASy Swiss-Prot
Match: Q9SIJ5 (Protein RADIALIS-like 2 OS=Arabidopsis thaliana OX=3702 GN=RL2 PE=2 SV=1) HSP 1 Score: 75.9 bits (185), Expect = 3.0e-13 Identity = 36/67 (53.73%), Postives = 46/67 (68.66%), Query Frame = 0
BLAST of Sed0020618 vs. ExPASy Swiss-Prot
Match: F4JVB8 (Protein RADIALIS-like 1 OS=Arabidopsis thaliana OX=3702 GN=RL1 PE=2 SV=1) HSP 1 Score: 75.5 bits (184), Expect = 4.0e-13 Identity = 40/73 (54.79%), Postives = 48/73 (65.75%), Query Frame = 0
BLAST of Sed0020618 vs. ExPASy Swiss-Prot
Match: Q1A173 (Protein RADIALIS-like 6 OS=Arabidopsis thaliana OX=3702 GN=RL6 PE=2 SV=1) HSP 1 Score: 67.8 bits (164), Expect = 8.3e-11 Identity = 33/59 (55.93%), Postives = 41/59 (69.49%), Query Frame = 0
BLAST of Sed0020618 vs. ExPASy Swiss-Prot
Match: Q6NNN0 (Protein RADIALIS-like 3 OS=Arabidopsis thaliana OX=3702 GN=RL3 PE=2 SV=1) HSP 1 Score: 64.3 bits (155), Expect = 9.2e-10 Identity = 31/59 (52.54%), Postives = 39/59 (66.10%), Query Frame = 0
BLAST of Sed0020618 vs. ExPASy TrEMBL
Match: A0A1S3BGF6 (protein RADIALIS-like 1 OS=Cucumis melo OX=3656 GN=LOC103489576 PE=4 SV=1) HSP 1 Score: 107.1 bits (266), Expect = 4.5e-20 Identity = 53/72 (73.61%), Postives = 57/72 (79.17%), Query Frame = 0
BLAST of Sed0020618 vs. ExPASy TrEMBL
Match: A0A5A7SYM4 (Protein RADIALIS-like 1 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold69G00290 PE=4 SV=1) HSP 1 Score: 105.5 bits (262), Expect = 1.3e-19 Identity = 52/72 (72.22%), Postives = 57/72 (79.17%), Query Frame = 0
BLAST of Sed0020618 vs. ExPASy TrEMBL
Match: A0A0A0K344 (SANT domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_7G169070 PE=4 SV=1) HSP 1 Score: 104.0 bits (258), Expect = 3.8e-19 Identity = 51/72 (70.83%), Postives = 57/72 (79.17%), Query Frame = 0
BLAST of Sed0020618 vs. ExPASy TrEMBL
Match: A0A6J1IA78 (protein RADIALIS-like 1 OS=Cucurbita maxima OX=3661 GN=LOC111471063 PE=4 SV=1) HSP 1 Score: 100.1 bits (248), Expect = 5.6e-18 Identity = 49/72 (68.06%), Postives = 56/72 (77.78%), Query Frame = 0
BLAST of Sed0020618 vs. ExPASy TrEMBL
Match: A0A6J1GJG0 (protein RADIALIS-like 1 OS=Cucurbita moschata OX=3662 GN=LOC111454835 PE=4 SV=1) HSP 1 Score: 100.1 bits (248), Expect = 5.6e-18 Identity = 49/72 (68.06%), Postives = 56/72 (77.78%), Query Frame = 0
BLAST of Sed0020618 vs. TAIR 10
Match: AT2G21650.1 (Homeodomain-like superfamily protein ) HSP 1 Score: 75.9 bits (185), Expect = 2.2e-14 Identity = 36/67 (53.73%), Postives = 46/67 (68.66%), Query Frame = 0
BLAST of Sed0020618 vs. TAIR 10
Match: AT4G39250.1 (RAD-like 1 ) HSP 1 Score: 75.5 bits (184), Expect = 2.8e-14 Identity = 40/73 (54.79%), Postives = 48/73 (65.75%), Query Frame = 0
BLAST of Sed0020618 vs. TAIR 10
Match: AT1G75250.1 (RAD-like 6 ) HSP 1 Score: 67.8 bits (164), Expect = 5.9e-12 Identity = 33/59 (55.93%), Postives = 41/59 (69.49%), Query Frame = 0
BLAST of Sed0020618 vs. TAIR 10
Match: AT1G75250.2 (RAD-like 6 ) HSP 1 Score: 67.8 bits (164), Expect = 5.9e-12 Identity = 33/59 (55.93%), Postives = 41/59 (69.49%), Query Frame = 0
BLAST of Sed0020618 vs. TAIR 10
Match: AT1G19510.1 (RAD-like 5 ) HSP 1 Score: 64.3 bits (155), Expect = 6.5e-11 Identity = 27/40 (67.50%), Postives = 34/40 (85.00%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25 Position : 0 Zoom : x 1
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
|