Sed0020601 (gene) Chayote v1
Overview
Sequences
The following sequences are available for this feature:
Legend: polypeptideexonCDS Hold the cursor over a type above to highlight its positions in the sequence below.ATGATCATGACTCTGCTTTTTCCCAATCTGTTTAAGTGGACAACAAACTGTAATGATGATGACAAAACACCCACCACTCCCAAATTACTTTTTGTGGTGTGCCATCCCTTTGATCTTTAACCATTCTGATCTTCATCTTCTTCACTCACAGGCCTCCAATTTGGTCATGGTTTCATCGAATCGGAGCGGCGAAGAGACGCGTTTCTTTGTAGATTGCACTCGTGGCGGCGTCGGCGAGGGCGCGGAGCAGGTGCACGGCCGTAGTGTGCTCTTGCTATGCACCTTCAGGAACTAAGACAAACACCATTTTCAGGTCACGTTCTGTTGAGGAACAGAGAGATGGGGTCAACCAAAAATGGAGTAATCATGAACTTCAACATGCTAATGGAAATGGAAATGGGCCTGGTGGGATTCCCTTGGATTTCCCAAATCTCAAGAGCAATTTGAAGAAAAAGACTAATAAGGACAAGGAGAATTGTCCTTCAGAAACAAGGAAAGTGAACTGGCCTGATGCCCATGGAAAAAATATTGCTCATATCCAAGAGTTTGAACCAAGGTATGATTTATCTTTAGTGTTAGTTTTTTTTTTTGAAGTATAAATGGAGGAGAGGGGCCACAAACTTACGTATAAGGTATTACTATTCAAATAAATGAGGGTAAACTATCAATTTCTAATATGGTACTCCTAATTGTGGTGTTGAACTGGATTATCACTAAAAAATTGAAACCAACACGTCATCAACCCTTTTGATAGGTATGGTTTAGTTTATAAATTATTAGGAATGAATTGCAAATTCTTGGTCGTAGATTAGCTTTGTTTTGTAATTCGTGAGTGTTTTGAGCAATTTATTAATACTCTGCATCTCGAATAAGCTCATAGGACAATTAGCTCGATCCTGCTACATTTAATTGTCAATAATCCTAGTAAGATACTAAAATATAGGTAGTCATCTTGCCCTTTTTATATTCGTAAATATTCAGATTAACTTACATAAACACATTACTACATTTAATTGGAAAATTAATTCTTATGTAGCGAACTACAATGAATTGAATTAATTTCATAAAGTACTTTATGAATTTCAACTCTCATTTAACCACTAAAACAACCGGTGATTAGAGTTTGTTGTAGGGAAGAAATTATTAAGACTACGATGAATTAAACTAATTTCATAAAAGTACTTTATGAATTTCAACTTTCATTTGATCACTAACACAATCCATGGTAATTAAATTTGTTATAGGGAAGAAATTATTTAGGCCTTAATGTAGTGGGAGAGGACAATGGGAAGTTGGAGAGAGAGTTGAGATGTGGGGAAAGAAATACAAATACAATAATGGGCCATATGTTCTATGATTAAGGTTGGATTAAGTGAATGAATATTAAAGCAACCATGTTGTATTTGAAACCATATAGTTTATTTGAACTACAAAGTTGAATTATATGTTTATTATGGAAGTTTGTGGTTATTGTGTAACAGTGCATCAGGAGATGGGGAGCTTGAGGGAGTAAGGAACTCTTGTGTCTGCACAATTCAATAA ATGATCATGACTCTGCTTTTTCCCAATCTGTTTAAGTGGACAACAAACTGTAATGATGATGACAAAACACCCACCACTCCCAAATTACTTTTTGAACAGAGAGATGGGGTCAACCAAAAATGGAGTAATCATGAACTTCAACATGCTAATGGAAATGGAAATGGGCCTGGTGGGATTCCCTTGGATTTCCCAAATCTCAAGAGCAATTTGAAGAAAAAGACTAATAAGGACAAGGAGAATTGTCCTTCAGAAACAAGGAAAGTGAACTGGCCTGATGCCCATGGAAAAAATATTGCTCATATCCAAGAGTTTGAACCAAGTGCATCAGGAGATGGGGAGCTTGAGGGAGTAAGGAACTCTTGTGTCTGCACAATTCAATAA ATGATCATGACTCTGCTTTTTCCCAATCTGTTTAAGTGGACAACAAACTGTAATGATGATGACAAAACACCCACCACTCCCAAATTACTTTTTGAACAGAGAGATGGGGTCAACCAAAAATGGAGTAATCATGAACTTCAACATGCTAATGGAAATGGAAATGGGCCTGGTGGGATTCCCTTGGATTTCCCAAATCTCAAGAGCAATTTGAAGAAAAAGACTAATAAGGACAAGGAGAATTGTCCTTCAGAAACAAGGAAAGTGAACTGGCCTGATGCCCATGGAAAAAATATTGCTCATATCCAAGAGTTTGAACCAAGTGCATCAGGAGATGGGGAGCTTGAGGGAGTAAGGAACTCTTGTGTCTGCACAATTCAATAA MIMTLLFPNLFKWTTNCNDDDKTPTTPKLLFEQRDGVNQKWSNHELQHANGNGNGPGGIPLDFPNLKSNLKKKTNKDKENCPSETRKVNWPDAHGKNIAHIQEFEPSASGDGELEGVRNSCVCTIQ Homology
BLAST of Sed0020601 vs. NCBI nr
Match: KAG6593791.1 (hypothetical protein SDJN03_13267, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 151.4 bits (381), Expect = 5.3e-33 Identity = 79/117 (67.52%), Postives = 92/117 (78.63%), Query Frame = 0
BLAST of Sed0020601 vs. NCBI nr
Match: KAG7026120.1 (hypothetical protein SDJN02_12619 [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 151.4 bits (381), Expect = 5.3e-33 Identity = 79/117 (67.52%), Postives = 92/117 (78.63%), Query Frame = 0
BLAST of Sed0020601 vs. NCBI nr
Match: KAF3972265.1 (hypothetical protein CMV_004221 [Castanea mollissima]) HSP 1 Score: 108.2 bits (269), Expect = 5.2e-20 Identity = 57/99 (57.58%), Postives = 67/99 (67.68%), Query Frame = 0
BLAST of Sed0020601 vs. NCBI nr
Match: XP_024931762.1 (uncharacterized protein LOC112492388 [Ziziphus jujuba]) HSP 1 Score: 104.4 bits (259), Expect = 7.4e-19 Identity = 57/132 (43.18%), Postives = 76/132 (57.58%), Query Frame = 0
BLAST of Sed0020601 vs. NCBI nr
Match: EOY05362.1 (Uncharacterized protein TCM_020382 isoform 1 [Theobroma cacao]) HSP 1 Score: 103.6 bits (257), Expect = 1.3e-18 Identity = 60/109 (55.05%), Postives = 70/109 (64.22%), Query Frame = 0
BLAST of Sed0020601 vs. ExPASy TrEMBL
Match: A0A6P6GC85 (uncharacterized protein LOC112492388 OS=Ziziphus jujuba OX=326968 GN=LOC112492388 PE=4 SV=1) HSP 1 Score: 104.4 bits (259), Expect = 3.6e-19 Identity = 57/132 (43.18%), Postives = 76/132 (57.58%), Query Frame = 0
BLAST of Sed0020601 vs. ExPASy TrEMBL
Match: A0A061ELW3 (Uncharacterized protein isoform 1 OS=Theobroma cacao OX=3641 GN=TCM_020382 PE=4 SV=1) HSP 1 Score: 103.6 bits (257), Expect = 6.2e-19 Identity = 60/109 (55.05%), Postives = 70/109 (64.22%), Query Frame = 0
BLAST of Sed0020601 vs. ExPASy TrEMBL
Match: A0A2I4F605 (uncharacterized protein LOC108995885 OS=Juglans regia OX=51240 GN=LOC108995885 PE=4 SV=1) HSP 1 Score: 103.6 bits (257), Expect = 6.2e-19 Identity = 57/119 (47.90%), Postives = 73/119 (61.34%), Query Frame = 0
BLAST of Sed0020601 vs. ExPASy TrEMBL
Match: A0A7N2LXE2 (Uncharacterized protein OS=Quercus lobata OX=97700 PE=4 SV=1) HSP 1 Score: 101.3 bits (251), Expect = 3.1e-18 Identity = 53/88 (60.23%), Postives = 59/88 (67.05%), Query Frame = 0
BLAST of Sed0020601 vs. ExPASy TrEMBL
Match: A0A5D2D9X9 (Uncharacterized protein (Fragment) OS=Gossypium darwinii OX=34276 GN=ES288_D02G038900v1 PE=4 SV=1) HSP 1 Score: 99.4 bits (246), Expect = 1.2e-17 Identity = 56/105 (53.33%), Postives = 71/105 (67.62%), Query Frame = 0
BLAST of Sed0020601 vs. TAIR 10
Match: AT3G13480.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G55475.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). ) HSP 1 Score: 46.6 bits (109), Expect = 1.7e-05 Identity = 26/60 (43.33%), Postives = 33/60 (55.00%), Query Frame = 0
BLAST of Sed0020601 vs. TAIR 10
Match: AT1G55475.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G13480.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). ) HSP 1 Score: 45.8 bits (107), Expect = 2.9e-05 Identity = 36/112 (32.14%), Postives = 53/112 (47.32%), Query Frame = 0
BLAST of Sed0020601 vs. TAIR 10
Match: AT1G34010.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G22790.2); Has 74 Blast hits to 74 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 74; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). ) HSP 1 Score: 44.3 bits (103), Expect = 8.5e-05 Identity = 29/74 (39.19%), Postives = 39/74 (52.70%), Query Frame = 0
BLAST of Sed0020601 vs. TAIR 10
Match: AT1G22790.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G34010.1); Has 67 Blast hits to 67 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 67; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). ) HSP 1 Score: 41.2 bits (95), Expect = 7.2e-04 Identity = 21/43 (48.84%), Postives = 26/43 (60.47%), Query Frame = 0
BLAST of Sed0020601 vs. TAIR 10
Match: AT1G22790.2 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G34010.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). ) HSP 1 Score: 41.2 bits (95), Expect = 7.2e-04 Identity = 21/43 (48.84%), Postives = 26/43 (60.47%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25
Relationships
The following mRNA feature(s) are a part of this gene:
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