Sed0020547 (gene) Chayote v1

Overview


Name	Sed0020547
Type	gene
Organism	Sechium edule (Chayote v1)
Description	WW domain-containing protein
Location	LG04: 3936909 .. 3938054 (+)
RNA-Seq Expression	Sed0020547
Synteny	Sed0020547

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

TCACAAATTAAACCTCATTGCCAACCAGATTTTGAAATCAGAGCTAGGATAATTATTTCTCCTTTTACTTACCCTCTTTCTCTCTTTGCAAATCAAATATGAAGAGAAAATGGGATGATCATCCTCGAGGAGATAACTTCAATTCTTCTCCGGTTGATATCGAGCTCCACCTCGAGACTCCGTTACCTTTGGAGTGGCAACGATGCCTCGATATCCAGGTACTCAGCGTACTCTCACATAAATATGATCAGCACTATGTTGAGATATCTTGAATAAGTTATTTGATGCTTCAAATGATCTAGCATAAGAATTTTGTTGTCTAGGATTAATTAAGTTTATATGGATATATAATTATGATTTAAATTTTGTTTTGGACTTTATGTTCGGTTTTTGTGTACTTCAAGGGTTAAGAGGGGTGTAATTTATAAATTCTCTCAAAACTTTTGTCTCTTATCTTAGTGAATTCTCGTTAATGATGTCGTTTTTTCCTTCTCATGGTTGACATAGATAAACACATCGTTAATGAATCACGTAAACCTGTCTCTTTTTTTTCTTTTATTCTTTGTTTGTCAAGGTTGGTTTCGGTCATAAATACAATTATTCTTTCCACATTGATATTAAGTTGTACAACTTTAATTTCTTTATCAACATACACAGTCTGGGCAGATACACTTCTACAACACGAAAACTCATAAGCGGACGGCCACGGATCCAACGAGGGAGTTGAAGCCTGCCAATAGCCCTAGTGGTGAGTTCTTGAGCTTAGACCTTGAGCTGAATCTAAATGGCCAATCTATGACAAGAAACAATGGTAGTGGTCAATTATCAAAGAAGAAGAACAATGGGGATCATAATATGTGTGGTTTAGAAAGAGCTTTGAAACATGGAGTTCCTAATTCATGGCTAAGATTGGAAAGAGAAGAAACAACAGAGATGGTTGCTAGAGTTTGCATGCACTGTCACTTATTGGTTATGCTTTTAAAGTCCTCACCCACATGCCCCAATTGCAAATTCATCCAACCTTTACACCTGCAAACCTCACCAACTACAACAACCTTGTTTATAGCCTCTCACCCTACTAATAAGAATAATCAAAGCCAGCCCTATAAAAGTTTCCCAACCCCTATTCAAATTAATAATGTCTGA

mRNA sequence

TCACAAATTAAACCTCATTGCCAACCAGATTTTGAAATCAGAGCTAGGATAATTATTTCTCCTTTTACTTACCCTCTTTCTCTCTTTGCAAATCAAATATGAAGAGAAAATGGGATGATCATCCTCGAGGAGATAACTTCAATTCTTCTCCGGTTGATATCGAGCTCCACCTCGAGACTCCGTTACCTTTGGAGTGGCAACGATGCCTCGATATCCAGTCTGGGCAGATACACTTCTACAACACGAAAACTCATAAGCGGACGGCCACGGATCCAACGAGGGAGTTGAAGCCTGCCAATAGCCCTAGTGGTGAGTTCTTGAGCTTAGACCTTGAGCTGAATCTAAATGGCCAATCTATGACAAGAAACAATGGTAGTGGTCAATTATCAAAGAAGAAGAACAATGGGGATCATAATATGTGTGGTTTAGAAAGAGCTTTGAAACATGGAGTTCCTAATTCATGGCTAAGATTGGAAAGAGAAGAAACAACAGAGATGGTTGCTAGAGTTTGCATGCACTGTCACTTATTGGTTATGCTTTTAAAGTCCTCACCCACATGCCCCAATTGCAAATTCATCCAACCTTTACACCTGCAAACCTCACCAACTACAACAACCTTGTTTATAGCCTCTCACCCTACTAATAAGAATAATCAAAGCCAGCCCTATAAAAGTTTCCCAACCCCTATTCAAATTAATAATGTCTGA

Coding sequence (CDS)

ATGAAGAGAAAATGGGATGATCATCCTCGAGGAGATAACTTCAATTCTTCTCCGGTTGATATCGAGCTCCACCTCGAGACTCCGTTACCTTTGGAGTGGCAACGATGCCTCGATATCCAGTCTGGGCAGATACACTTCTACAACACGAAAACTCATAAGCGGACGGCCACGGATCCAACGAGGGAGTTGAAGCCTGCCAATAGCCCTAGTGGTGAGTTCTTGAGCTTAGACCTTGAGCTGAATCTAAATGGCCAATCTATGACAAGAAACAATGGTAGTGGTCAATTATCAAAGAAGAAGAACAATGGGGATCATAATATGTGTGGTTTAGAAAGAGCTTTGAAACATGGAGTTCCTAATTCATGGCTAAGATTGGAAAGAGAAGAAACAACAGAGATGGTTGCTAGAGTTTGCATGCACTGTCACTTATTGGTTATGCTTTTAAAGTCCTCACCCACATGCCCCAATTGCAAATTCATCCAACCTTTACACCTGCAAACCTCACCAACTACAACAACCTTGTTTATAGCCTCTCACCCTACTAATAAGAATAATCAAAGCCAGCCCTATAAAAGTTTCCCAACCCCTATTCAAATTAATAATGTCTGA

Protein sequence

MKRKWDDHPRGDNFNSSPVDIELHLETPLPLEWQRCLDIQSGQIHFYNTKTHKRTATDPTRELKPANSPSGEFLSLDLELNLNGQSMTRNNGSGQLSKKKNNGDHNMCGLERALKHGVPNSWLRLEREETTEMVARVCMHCHLLVMLLKSSPTCPNCKFIQPLHLQTSPTTTTLFIASHPTNKNNQSQPYKSFPTPIQINNV

Homology

[Close]

BLAST of Sed0020547 vs. NCBI nr
Match: XP_022981059.1 (uncharacterized protein LOC111480319 [Cucurbita maxima])

HSP 1 Score: 221.1 bits (562), Expect = 8.8e-54
Identity = 130/200 (65.00%), Postives = 145/200 (72.50%), Query Frame = 0


Query: 1   MKRKWDDHPRGDNFNSSPVDIELHLETPLPLEWQRCLDIQSGQIHFYNTKTHKRTATDPT 60
           MKRKW++ PRG +FN SP DIELHLE+PLPLEWQRCLDIQSG+IHFYNTKT K+T  DP 
Sbjct: 1   MKRKWEE-PRGGSFN-SPADIELHLESPLPLEWQRCLDIQSGKIHFYNTKTRKKTCMDPR 60

Query: 61  RELKPANSPSGEFLSLDLELNLNGQSMTRNNGSGQLSKKKNNGDHNMCGLERALK--HGV 120
            +L+P   P G+ LSLDLELNLN QSM RN G    SKKK++G   M  L RA K  HG 
Sbjct: 61  SKLEP--RPGGDPLSLDLELNLNSQSM-RNGGE---SKKKSDG--AMASLGRAWKQGHGC 120

Query: 121 PNSWLRLEREETTEMVARVCMHCHLLVMLLKSSPTCPNCKFIQPLHLQTSPTTTTLFIAS 180
           P            EM+ARVCM CHLLVM+LKSSPTCPNCKFI P+ LQT P TTTLFIAS
Sbjct: 121 PQQ----------EMIARVCMQCHLLVMVLKSSPTCPNCKFIHPIDLQT-PPTTTLFIAS 178

Query: 181 HPTNKNNQSQPYKSFPTPIQ 199
             TN NNQ+Q  K FP PIQ
Sbjct: 181 RSTN-NNQTQSLKGFPNPIQ 178

[Close]

BLAST of Sed0020547 vs. NCBI nr
Match: XP_022138158.1 (uncharacterized protein LOC111009395 [Momordica charantia])

HSP 1 Score: 219.9 bits (559), Expect = 1.9e-53
Identity = 129/204 (63.24%), Postives = 143/204 (70.10%), Query Frame = 0


Query: 1   MKRKWDDHPRGDNFNSSPVDIELHLETPLPLEWQRCLDIQSGQIHFYNTKTHKRTATDPT 60
           MKRKW+D P+ +N +  P DIELHLETPLPLEWQRCLDIQSGQIHFYNTKT KR+  DP 
Sbjct: 1   MKRKWEDCPQAENIDQFPPDIELHLETPLPLEWQRCLDIQSGQIHFYNTKTRKRSFKDPR 60

Query: 61  RELKPANSP-SGEFLSLDLELNLNGQSMTRNNGSGQLSKKKNNGDHNMCGLERALKHGVP 120
           R  +P +SP   + LSLDLELNLN Q           SKKK++G   M GL R   HG  
Sbjct: 61  RPDQPRSSPGEDDPLSLDLELNLNCQ-----------SKKKSDG-VIMSGLGRGSIHG-- 120

Query: 121 NSWLRLEREETTEMVARVCMHCHLLVMLLKSSPTCPNCKFIQPL--HLQTSP---TTTTL 180
            SWLRLEREE  EMVARVCM CHLLVM+LKSSPTCPNCKFI P+   LQ  P   TTTTL
Sbjct: 121 PSWLRLEREEQAEMVARVCMQCHLLVMVLKSSPTCPNCKFIHPIPTDLQIIPPTTTTTTL 180

Query: 181 FIASHPTNKNNQSQPYKSFPTPIQ 199
           FIASHPT   +Q+Q  K F   IQ
Sbjct: 181 FIASHPT--KDQTQSLKRFSNAIQ 188

[Close]

BLAST of Sed0020547 vs. NCBI nr
Match: XP_022940283.1 (uncharacterized protein LOC111445951 [Cucurbita moschata])

HSP 1 Score: 215.7 bits (548), Expect = 3.7e-52
Identity = 126/198 (63.64%), Postives = 141/198 (71.21%), Query Frame = 0


Query: 1   MKRKWDDHPRGDNFNSSPVDIELHLETPLPLEWQRCLDIQSGQIHFYNTKTHKRTATDPT 60
           MKRKW++ P G +FN SP DIELHLE+PLPLEWQRCLDIQSG+IHFYNTKT KRT+ DP 
Sbjct: 5   MKRKWEE-PPGGSFN-SPADIELHLESPLPLEWQRCLDIQSGKIHFYNTKTQKRTSMDPR 64

Query: 61  RELKPANSPSGEFLSLDLELNLNGQSMTRNNGSGQLSKKKNNGDHNMCGLERALKHGVPN 120
            +L+P  SP G+ LSLDLELNLN QSM RN G    SKKK++G            HG P 
Sbjct: 65  SKLEP--SPGGDPLSLDLELNLNSQSM-RNGGE---SKKKSDGAWKQ-------GHGCPQ 124

Query: 121 SWLRLEREETTEMVARVCMHCHLLVMLLKSSPTCPNCKFIQPLHLQTSPTTTTLFIASHP 180
                      EM+ARVCM CHLLVM+LKSSPTCPNCKFI P+ LQT P TTTLFIAS  
Sbjct: 125 Q----------EMIARVCMQCHLLVMVLKSSPTCPNCKFIHPIDLQT-PPTTTLFIASRS 175

Query: 181 TNKNNQSQPYKSFPTPIQ 199
           TN NNQ+Q  K FP PIQ
Sbjct: 185 TN-NNQTQSLKGFPNPIQ 175

[Close]

BLAST of Sed0020547 vs. NCBI nr
Match: KAG6591744.1 (hypothetical protein SDJN03_14090, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 215.3 bits (547), Expect = 4.8e-52
Identity = 127/201 (63.18%), Postives = 145/201 (72.14%), Query Frame = 0


Query: 1   MKRKWDDHPRGDNFNSSPVDIELHLETPLPLEWQRCLDIQSGQIHFYNTKTHKRTATDPT 60
           MKRKW+D P+G+ FN SP DIEL LETPLPLEWQRCLDIQSGQI+FYNTKT KRT+ DP 
Sbjct: 1   MKRKWED-PQGETFN-SPTDIELQLETPLPLEWQRCLDIQSGQIYFYNTKTQKRTSMDPR 60

Query: 61  RELKPANSPSGEFLSLDLELNLNGQSMTRNNGSGQLSKKKNNGDHNMCGLERALK--HGV 120
           R+ +  NS  GE LSLDLELNLN QS+ RN G    +KKK++G     GL + LK  +G 
Sbjct: 61  RKWEGPNSLGGEPLSLDLELNLNCQSI-RNGGQ---TKKKSDGIMG-GGLGKGLKQGNGC 120

Query: 121 PNSWLRLEREETTEMVARVCMHCHLLVMLLKSSPTCPNCKFIQPLHLQTSPTTTTLFIAS 180
           P  WLR ER +  EM ARVCM CHLLVMLLKSSPTCPNCKFI P+    SP TTT FI +
Sbjct: 121 P-PWLRFERGQQQEMEARVCMQCHLLVMLLKSSPTCPNCKFIHPITDLQSPPTTTFFIPN 180

Query: 181 HPTNKNNQSQPYKS-FPTPIQ 199
               K+NQ+   KS FP PIQ
Sbjct: 181 SLPTKSNQTHSLKSFFPNPIQ 193

[Close]

BLAST of Sed0020547 vs. NCBI nr
Match: XP_023524779.1 (uncharacterized protein LOC111788613 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 215.3 bits (547), Expect = 4.8e-52
Identity = 126/198 (63.64%), Postives = 141/198 (71.21%), Query Frame = 0


Query: 1   MKRKWDDHPRGDNFNSSPVDIELHLETPLPLEWQRCLDIQSGQIHFYNTKTHKRTATDPT 60
           MKRKW++ PRG +FN SP DIELHLE+PLPLEWQRCLDIQSG+IHFYNTKT KRT+ DP 
Sbjct: 5   MKRKWEE-PRGGSFN-SPADIELHLESPLPLEWQRCLDIQSGKIHFYNTKTRKRTSMDPR 64

Query: 61  RELKPANSPSGEFLSLDLELNLNGQSMTRNNGSGQLSKKKNNGDHNMCGLERALKHGVPN 120
            +L+   SP G+ LSLDLELNLN QSM RN G    SKKK++G            HG P 
Sbjct: 65  SKLE--TSPGGDPLSLDLELNLNSQSM-RNGGE---SKKKSDGAWKQ-------GHGCPQ 124

Query: 121 SWLRLEREETTEMVARVCMHCHLLVMLLKSSPTCPNCKFIQPLHLQTSPTTTTLFIASHP 180
                      EM+ARVCM CHLLVM+LKSSPTCPNCKFI P+ LQT P TTTLFIAS  
Sbjct: 125 Q----------EMIARVCMQCHLLVMVLKSSPTCPNCKFIHPIDLQT-PPTTTLFIASRS 175

Query: 181 TNKNNQSQPYKSFPTPIQ 199
           TN NNQ+Q  K FP PIQ
Sbjct: 185 TN-NNQTQSLKGFPNPIQ 175

[Close]

BLAST of Sed0020547 vs. ExPASy TrEMBL
Match: A0A6J1J0Y6 (uncharacterized protein LOC111480319 OS=Cucurbita maxima OX=3661 GN=LOC111480319 PE=4 SV=1)

HSP 1 Score: 221.1 bits (562), Expect = 4.2e-54
Identity = 130/200 (65.00%), Postives = 145/200 (72.50%), Query Frame = 0


Query: 1   MKRKWDDHPRGDNFNSSPVDIELHLETPLPLEWQRCLDIQSGQIHFYNTKTHKRTATDPT 60
           MKRKW++ PRG +FN SP DIELHLE+PLPLEWQRCLDIQSG+IHFYNTKT K+T  DP 
Sbjct: 1   MKRKWEE-PRGGSFN-SPADIELHLESPLPLEWQRCLDIQSGKIHFYNTKTRKKTCMDPR 60

Query: 61  RELKPANSPSGEFLSLDLELNLNGQSMTRNNGSGQLSKKKNNGDHNMCGLERALK--HGV 120
            +L+P   P G+ LSLDLELNLN QSM RN G    SKKK++G   M  L RA K  HG 
Sbjct: 61  SKLEP--RPGGDPLSLDLELNLNSQSM-RNGGE---SKKKSDG--AMASLGRAWKQGHGC 120

Query: 121 PNSWLRLEREETTEMVARVCMHCHLLVMLLKSSPTCPNCKFIQPLHLQTSPTTTTLFIAS 180
           P            EM+ARVCM CHLLVM+LKSSPTCPNCKFI P+ LQT P TTTLFIAS
Sbjct: 121 PQQ----------EMIARVCMQCHLLVMVLKSSPTCPNCKFIHPIDLQT-PPTTTLFIAS 178

Query: 181 HPTNKNNQSQPYKSFPTPIQ 199
             TN NNQ+Q  K FP PIQ
Sbjct: 181 RSTN-NNQTQSLKGFPNPIQ 178

[Close]

BLAST of Sed0020547 vs. ExPASy TrEMBL
Match: A0A6J1CC88 (uncharacterized protein LOC111009395 OS=Momordica charantia OX=3673 GN=LOC111009395 PE=4 SV=1)

HSP 1 Score: 219.9 bits (559), Expect = 9.4e-54
Identity = 129/204 (63.24%), Postives = 143/204 (70.10%), Query Frame = 0


Query: 1   MKRKWDDHPRGDNFNSSPVDIELHLETPLPLEWQRCLDIQSGQIHFYNTKTHKRTATDPT 60
           MKRKW+D P+ +N +  P DIELHLETPLPLEWQRCLDIQSGQIHFYNTKT KR+  DP 
Sbjct: 1   MKRKWEDCPQAENIDQFPPDIELHLETPLPLEWQRCLDIQSGQIHFYNTKTRKRSFKDPR 60

Query: 61  RELKPANSP-SGEFLSLDLELNLNGQSMTRNNGSGQLSKKKNNGDHNMCGLERALKHGVP 120
           R  +P +SP   + LSLDLELNLN Q           SKKK++G   M GL R   HG  
Sbjct: 61  RPDQPRSSPGEDDPLSLDLELNLNCQ-----------SKKKSDG-VIMSGLGRGSIHG-- 120

Query: 121 NSWLRLEREETTEMVARVCMHCHLLVMLLKSSPTCPNCKFIQPL--HLQTSP---TTTTL 180
            SWLRLEREE  EMVARVCM CHLLVM+LKSSPTCPNCKFI P+   LQ  P   TTTTL
Sbjct: 121 PSWLRLEREEQAEMVARVCMQCHLLVMVLKSSPTCPNCKFIHPIPTDLQIIPPTTTTTTL 180

Query: 181 FIASHPTNKNNQSQPYKSFPTPIQ 199
           FIASHPT   +Q+Q  K F   IQ
Sbjct: 181 FIASHPT--KDQTQSLKRFSNAIQ 188

[Close]

BLAST of Sed0020547 vs. ExPASy TrEMBL
Match: A0A6J1FNU7 (uncharacterized protein LOC111445951 OS=Cucurbita moschata OX=3662 GN=LOC111445951 PE=4 SV=1)

HSP 1 Score: 215.7 bits (548), Expect = 1.8e-52
Identity = 126/198 (63.64%), Postives = 141/198 (71.21%), Query Frame = 0


Query: 1   MKRKWDDHPRGDNFNSSPVDIELHLETPLPLEWQRCLDIQSGQIHFYNTKTHKRTATDPT 60
           MKRKW++ P G +FN SP DIELHLE+PLPLEWQRCLDIQSG+IHFYNTKT KRT+ DP 
Sbjct: 5   MKRKWEE-PPGGSFN-SPADIELHLESPLPLEWQRCLDIQSGKIHFYNTKTQKRTSMDPR 64

Query: 61  RELKPANSPSGEFLSLDLELNLNGQSMTRNNGSGQLSKKKNNGDHNMCGLERALKHGVPN 120
            +L+P  SP G+ LSLDLELNLN QSM RN G    SKKK++G            HG P 
Sbjct: 65  SKLEP--SPGGDPLSLDLELNLNSQSM-RNGGE---SKKKSDGAWKQ-------GHGCPQ 124

Query: 121 SWLRLEREETTEMVARVCMHCHLLVMLLKSSPTCPNCKFIQPLHLQTSPTTTTLFIASHP 180
                      EM+ARVCM CHLLVM+LKSSPTCPNCKFI P+ LQT P TTTLFIAS  
Sbjct: 125 Q----------EMIARVCMQCHLLVMVLKSSPTCPNCKFIHPIDLQT-PPTTTLFIASRS 175

Query: 181 TNKNNQSQPYKSFPTPIQ 199
           TN NNQ+Q  K FP PIQ
Sbjct: 185 TN-NNQTQSLKGFPNPIQ 175

[Close]

BLAST of Sed0020547 vs. ExPASy TrEMBL
Match: A0A6J1F8N8 (uncharacterized protein LOC111443136 OS=Cucurbita moschata OX=3662 GN=LOC111443136 PE=4 SV=1)

HSP 1 Score: 211.8 bits (538), Expect = 2.6e-51
Identity = 124/201 (61.69%), Postives = 142/201 (70.65%), Query Frame = 0


Query: 1   MKRKWDDHPRGDNFNSSPVDIELHLETPLPLEWQRCLDIQSGQIHFYNTKTHKRTATDPT 60
           MKRKW+D P+G+ FN SP DIEL LETPLPLEWQRCLDIQSGQI+FYNTKT KRT+ DP 
Sbjct: 1   MKRKWED-PQGETFN-SPTDIELQLETPLPLEWQRCLDIQSGQIYFYNTKTQKRTSMDPR 60

Query: 61  RELKPANSPSGEFLSLDLELNLNGQSMTRNNGSGQLSKKKNNGDHNMCGLERALK--HGV 120
           R+ +  NS  GE LSLDLELNLN QS+      G  +KKK++G     GL + LK  +G 
Sbjct: 61  RKWEGPNSLGGEPLSLDLELNLNCQSIRH----GGQTKKKSDGIMG-GGLGKGLKQGNGC 120

Query: 121 PNSWLRLEREETTEMVARVCMHCHLLVMLLKSSPTCPNCKFIQPLHLQTSPTTTTLFIAS 180
           P  WLR E  +  EM ARVCM CHLLVMLLKSSPTCPNCKFI P+    SP TTT FI +
Sbjct: 121 P-PWLRFEGGQQQEMEARVCMQCHLLVMLLKSSPTCPNCKFIHPITDLQSPPTTTFFIPN 180

Query: 181 HPTNKNNQSQPYKS-FPTPIQ 199
               K+NQ+   KS FP PIQ
Sbjct: 181 SLPTKSNQTHSLKSFFPNPIQ 193

[Close]

BLAST of Sed0020547 vs. ExPASy TrEMBL
Match: A0A6J1IME5 (uncharacterized protein LOC111476564 OS=Cucurbita maxima OX=3661 GN=LOC111476564 PE=4 SV=1)

HSP 1 Score: 211.1 bits (536), Expect = 4.4e-51
Identity = 125/201 (62.19%), Postives = 144/201 (71.64%), Query Frame = 0


Query: 1   MKRKWDDHPRGDNFNSSPVDIELHLETPLPLEWQRCLDIQSGQIHFYNTKTHKRTATDPT 60
           MKRKW+D P+G+ FN SP DIEL LETPLPLEWQRCLDIQSGQI+FYNTKT KRT+ DP 
Sbjct: 1   MKRKWED-PQGETFN-SPTDIELQLETPLPLEWQRCLDIQSGQIYFYNTKTQKRTSMDPR 60

Query: 61  RELKPANSPSGEFLSLDLELNLNGQSMTRNNGSGQLSKKKNNGDHNMCGLERALK--HGV 120
           R+ + +NS  GE LSLDLELNLN QS+ RN G    +KKK++G     GL + LK  +G 
Sbjct: 61  RKWEGSNSLGGEPLSLDLELNLNCQSI-RNGGQ---TKKKSDGIMG-GGLGKGLKQGNGC 120

Query: 121 PNSWLRLEREETTEMVARVCMHCHLLVMLLKSSPTCPNCKFIQPLHLQTSPTTTTLFIAS 180
           P  WLR ER +  EM ARVCM CHLLVMLLKSSPTCPNCKF  P+    SP TTT FI +
Sbjct: 121 P-PWLRFERGQQQEMEARVCMQCHLLVMLLKSSPTCPNCKFTHPITDLQSPPTTTFFIPN 180

Query: 181 HPTNKNNQSQPYKS-FPTPIQ 199
               K+NQ+   KS FP  IQ
Sbjct: 181 SLPTKSNQTHSLKSFFPNAIQ 193

[Close]

BLAST of Sed0020547 vs. TAIR 10
Match: AT1G78170.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G22250.1); Has 66 Blast hits to 66 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 66; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 73.2 bits (178), Expect = 2.7e-13
Identity = 60/182 (32.97%), Postives = 83/182 (45.60%), Query Frame = 0


Query: 5   WDDHPRGDNFNSSPVDIELHLETPLPLEWQRCLDIQSGQIHFYNTKTHKRTATDPTRELK 64
           +++ P+ ++  S   D ELHL TPLP +WQ              TK + RT+ +     K
Sbjct: 41  FNERPKSESMRSITFDFELHLHTPLPSDWQ--------------TKGYSRTSDEHRAYPK 100

Query: 65  PANSPSGEFLSLDLELNLNG------------QSMTRNNGSGQLSKKK---NNGDHNM-- 124
                    +SLDLELNL+             +S + +N +   SK K   N    ++  
Sbjct: 101 DPVIFGQPKMSLDLELNLSPSGSPSRTTTKKYESSSIHNETVSSSKIKVLTNTSKKSIIG 160

Query: 125 CGLERALKHGVPNSWLRLEREETT-------EMVARVCMHCHLLVMLLKSSPTCPNCKFI 163
            GL R+       SWL  E  +         EMV  VCM CH+LVML  S+P CPNCKF+
Sbjct: 161 TGLSRS------PSWLAFEGGDDNDVDHKGQEMVTTVCMKCHMLVMLCTSTPVCPNCKFM 202

[Close]

BLAST of Sed0020547 vs. TAIR 10
Match: AT4G08910.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G78170.1); Has 68 Blast hits to 68 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 64; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink). )

HSP 1 Score: 52.8 bits (125), Expect = 3.8e-07
Identity = 48/129 (37.21%), Postives = 61/129 (47.29%), Query Frame = 0


Query: 74  LSLDLELNLNGQSMTRNNGSGQLS-----------KKKNNGDHNMCGLERALKHGVPNSW 133
           +SLDLELNL+  S+   N    LS           KKK     ++ GLE   K  +    
Sbjct: 87  MSLDLELNLS-PSLIDLNHHHDLSNYNKGYEEDERKKKMMEKGSVLGLE--TKKSMSRVA 146

Query: 134 LRLERE-----------ETTEMVARVCMHCHLLVMLLKSSPTCPNCKFIQPLHLQTSPTT 181
             L+ +              EMVARVCM CH+LVML K+SP CPNCKF+       SP  
Sbjct: 147 FDLDDDCCDRGDGVGGRSEEEMVARVCMKCHMLVMLCKASPACPNCKFMH------SPED 206

[Close]

BLAST of Sed0020547 vs. TAIR 10
Match: AT1G22250.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G78170.1); Has 64 Blast hits to 64 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 64; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 49.3 bits (116), Expect = 4.2e-06
Identity = 47/145 (32.41%), Postives = 65/145 (44.83%), Query Frame = 0


Query: 48  NTKT--HKRTATDPTRELKP---------ANSPSGEFLSLDLELNLNGQSMTRNNGSGQL 107
           NT T   +R+ +D    +KP           S + E    DL+LNLN  S + ++    +
Sbjct: 44  NTTTLFFQRSKSDSAMLIKPDVQLHLEAKTQSETFEDHRTDLDLNLNLYSSSSSSVKKTI 103

Query: 108 ----------------SKKKNNGDHNMCGLERALKHGVPNSWLRLE-----REETTEMVA 161
                           SKK  +GD    GL R+       SWL  E      ++  EM+ 
Sbjct: 104 MEKDECSKGGTVIISPSKKVRSGD---IGLSRS------PSWLAFEGDDDDNQKKQEMIT 163

[Close]

BLAST of Sed0020547 vs. TAIR 10
Match: AT2G33510.1 (CONTAINS InterPro DOMAIN/s: WW/Rsp5/WWP (InterPro:IPR001202); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G28070.1); Has 3898 Blast hits to 1138 proteins in 179 species: Archae - 0; Bacteria - 40; Metazoa - 2353; Fungi - 242; Plants - 298; Viruses - 92; Other Eukaryotes - 873 (source: NCBI BLink). )

HSP 1 Score: 45.4 bits (106), Expect = 6.1e-05
Identity = 34/138 (24.64%), Postives = 62/138 (44.93%), Query Frame = 0


Query: 21  IELHLETPLPLEWQRCLDIQSGQIHFYNTKTHKRTATDPTRELKPANSPSGE-FLSLDLE 80
           +EL+    LP  W++CLD+++G+I++ N K   R   DP R++  A+  SG+ + ++  E
Sbjct: 51  LELNSHLSLPCHWEQCLDLKTGEIYYINWKNGMRVKEDP-RKVMNADPDSGDSYGTVCSE 110

Query: 81  LNLNGQSMTRNNGSGQLSKKKNNGDHNMCGLERALKHGVPNSWLRLEREETTEMVARVCM 140
            + +      ++     S ++N+ +      E              E EE   +V   C 
Sbjct: 111 EDSSYYDSEESSSESSPSSRENHKEEEEEEEEE-------------EEEEEDVLVVAGCK 170

Query: 141 HCHLLVMLLKSSPTCPNC 158
            C +  M+ K    CP C
Sbjct: 171 ACFMYFMVPKLVEDCPKC 174

The following BLAST results are available for this feature:

BLAST of Sed0020547 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022981059.1	8.8e-54	65.00	uncharacterized protein LOC111480319 [Cucurbita maxima]	[more]
XP_022138158.1	1.9e-53	63.24	uncharacterized protein LOC111009395 [Momordica charantia]	[more]
XP_022940283.1	3.7e-52	63.64	uncharacterized protein LOC111445951 [Cucurbita moschata]	[more]
KAG6591744.1	4.8e-52	63.18	hypothetical protein SDJN03_14090, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_023524779.1	4.8e-52	63.64	uncharacterized protein LOC111788613 [Cucurbita pepo subsp. pepo]	[more]

BLAST of Sed0020547 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Sed0020547 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1J0Y6	4.2e-54	65.00	uncharacterized protein LOC111480319 OS=Cucurbita maxima OX=3661 GN=LOC111480319...	[more]
A0A6J1CC88	9.4e-54	63.24	uncharacterized protein LOC111009395 OS=Momordica charantia OX=3673 GN=LOC111009...	[more]
A0A6J1FNU7	1.8e-52	63.64	uncharacterized protein LOC111445951 OS=Cucurbita moschata OX=3662 GN=LOC1114459...	[more]
A0A6J1F8N8	2.6e-51	61.69	uncharacterized protein LOC111443136 OS=Cucurbita moschata OX=3662 GN=LOC1114431...	[more]
A0A6J1IME5	4.4e-51	62.19	uncharacterized protein LOC111476564 OS=Cucurbita maxima OX=3661 GN=LOC111476564...	[more]

BLAST of Sed0020547 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G78170.1	2.7e-13	32.97	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]
AT4G08910.1	3.8e-07	37.21	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]
AT1G22250.1	4.2e-06	32.41	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]
AT2G33510.1	6.1e-05	24.64	CONTAINS InterPro DOMAIN/s: WW/Rsp5/WWP (InterPro:IPR001202); BEST Arabidopsis t...	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	2.20.70.10		coord: 24..69 e-value: 5.1E-6 score: 28.0
None	No IPR available	PANTHER	PTHR14791	BOMB/KIRA PROTEINS	coord: 2..169
None	No IPR available	PANTHER	PTHR14791:SF42	F16L1.2 PROTEIN	coord: 2..169
IPR036020	WW domain superfamily	SUPERFAMILY	51045	WW domain	coord: 27..62

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0020547.1	Sed0020547.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0005515	protein binding