Sed0020544 (gene) Chayote v1

Overview


Name	Sed0020544
Type	gene
Organism	Sechium edule (Chayote v1)
Description	protein EMBRYO DEFECTIVE 514-like
Location	LG12: 30566102 .. 30573271 (+)
RNA-Seq Expression	Sed0020544
Synteny	Sed0020544

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TGCAAAACTAGGGTTTTAGTCTCTTTGTCAGTTCCAACTTCAGAGCTCACTTAAAAATGGCGGAAGAGACAACCCCTGAACTCGCCGGAAACAACCCGGAGGTAACCAATCCGGTCACCGAAGATATGGAACTCGAAAGCACCGATCCGAAAGGATCCAGCGGCGATTCGGCTGCAACGAATGGAGATGCAAATTCGAAGCGAGAAAGGGAGGAAAATAGCGCCGATGACAGTGCCGGAGAGGCGAAGAAGCCGAAGGTGGAGACGTCGGTTGAAGAGGAAAGGCTTGAGAAGGTGGAACGAGAAGGGAAAGGCGAGGAGGAGGAGCATGGTCCGGTGAGTTTAGGCCCAAAAAGCTTCGGATCATCGGTGGAGTTGTTCGATTACTTCTACAAGTTCCTCCACCACTGGCCAGTCAACTTGAGCGTGAATCAGGTATAATCTTATGGCTTCGTTTTATGTATATATCGTCCTCTGTTTTGTTCATGGATGGTATATGAATTTTTATGAATAATCGAAATCAAAGATCAATGTGAGACAAAGAATACAATCATTTATAGTTTATGTGATTATATAAATGTTTGGGCAAATGTTAGATCCCTGCTCGCTGACCGGGCAGAGCGACTCCGATTAAGTAATCATATAGCTGCATTTCAACACTGAGTTTATTTCATGTAAAGTTTGTATTTTATATCTTACGATTTGCTCATTGAGAGGGATATATGGCGTTGCAAATGAAATAGAAGAATTAAATCATTAGAAAATTTAGATAACACATCATACTTAGCTCTTAAATTCATTAATAAATGAAAATTCAACACGCCCTCCCTCAGCTCTAGGCTTTTATAGAACCAAAATTCAATTAATCTAATGTTGTTGGTATTGTTTATCATCGTAGTTATTTTATCAGACACAAGTTACAACATAGTGAAAGCATTTCAAAATGAACAAGAAAACTCTACTTTAGTTAGAAACAAGATTTAGAAACAAAATTTTTCATCTAAATATTGCGGGTATTGTTTGTCAACTTAGATTTTTTATCAGATAGACAGATACATATCTATAAATAAGAAGCTAATCACAAATGAGGTGGGGAATTAGGATCTTTATCTTCGTGAAAGGTGTATGGCTTATTATTTAGCAGAAGGGGATAGGGACCCTTGTTGTAGAATAAGCTTGTATTTGTAAACAAGTTGGAATCTTAGACGTGTTATTCTTCAATATTTGAATGGTGCTTGATGATTGCTGCATCTTAAATTTTAGAAGTTCGAGTTATATATTTCTCGAAAATCCTTAATAGGCATTGAATGTGTACTATGTTTTTTGTTTCTTAAAACCGTATTACATTTTGGGGATTGGCAATATTTCTTGACATGTTTATTTTTAAGGAAATGAAATCTCTAACTTATCAAGTATAAGGTTTATTTAATTGGTCCTGTATTTGGTGAAGATATATTTTGCCTGTGCATGTTTTTTTATAATGAGATCTCTAACTTTCTTTCTTGGTAAATATTTAAGGCATCCTTTGATTGAGTTTATTTTAATTGAAAGCCGTAAGAGCATTCCGTTCTTTGGTTAGATTGATTTTAGGTGTTGGCTCGATTATATATATATATATATTCATATATTAGACTTGTTGATTTGGTTATGACCTTTTTTGTTGATTTTTGGTCAATTCTAGATTGTTTTCCTCAGTGTTTTAAAAAGCGCAAGGCGCACTAAGGCGCAATGGCCCTCTAGAGCCTGAGGCGCAAGGCGCACCAAAAGGCAAGGGCTTTTTTACTTAAGGCGCACTATATAAAAAAAACACAAAAAATTATATATATGTGGTTTATATGCCCAATAAATGGAGTTTCATAGCAATAAAAGGGTTCAAACATATATGATATATAAATAACTGAAGTTAAATTTCAATACATGATGCTTCGAGAATCAAAACAACCTAAAAGATGCAACCAAAACTACAAAAGTAAAAGCATAAGAATCTAAAGTCCTAAAGATCAAAATCCTCATCTTCATCATCACTAAATATCTCATCACCCTCGACCTCTACATCATTAGATTTATAAGCACTTGCATCTTCTTCTTCATCAGTGTCGGTATCCAAATCATGCAAAGCTAGTGGTATAGGTGCGGGTCGTGCTCGTGATGGACATGGGACTCGAGATCGTGATATTGGTTGTGTGGATGATGAACATGGTGCTTTATCCTTGTTTTTAGACGTGGCTCTAGAATAATAAGCAGCTTCTTTTGAACCAGATGCTCTTGAAACATCACCCCATGTTAGTGCGTCATCGTCGTCGTTGAATACAAGATCTCTATCATCGTCAGTATCATCATCTAATCTTCCCACCAACCACTCGTTACTCTCATCAATATCTTTTAAAGAGATGGGGTGCGCAACATCTTTAATATTAAATCGACGTTTCAATGTTTCGTTGTATTTTATGAACACCAAATCATTGAGACGACGTTGATCAAGTCTATTCCTCCTTTTGCTATGAAGCTGCATAATTAAAGAAGAACCATGACAATTCAATATTTTAAACCTTAAACAAGTTACTCTAGGAGTGGTGAATTTAATTAATTATCTAACCTGTTCAAAAACACTCCAATTGCGCTCGCATCCAGAAGAACTACAGGTAAGACCTAAAACTCGTATTGCGAACTTTTGCAAGTTTGGACTTGATTTGCCAAAATCATCCCACCATTCCACTACGTAGATTAAGATTAAAAATGATGTTAATCACTTTCTAACCATAAAATACTTGTATTCAAGTTTAGAATTTACCTGGAGATCTTTTGTTTCTTTGTCTAATAGCAATCGAGGTTCCAAACGATTCTTCACTTCTCTTATATAGGCTGAGTTCTTGAAGAATTTTATCTTGCATTTCTATAGAAGGAGTCATTCTTTCCAAACAAGAATGAAACCCCTTTGCAATTTCAACGCTACTTTCAATCTTAGGATCCGAGTAATAAAATTCGGGTTTAGAAAAATTCCAGTGCATGTAAGGGTCGATGCAACCGATGATCCCATCTCTTGTCAATGATGGCAAATACTACTTCGTATTTGTCTTTGTTACTGAAGCTCTTTTCTATGGTTTCCTTAGCCCTATCCATTGCTTCATAAATATACCCCATGGCCGGCTTTTTTTCATTATCGACTAACCGAAGAACTTTAACCAGAGGACATGAGACTTTAAGAGCAAATGTGATAGTGTTCCAAAAGCTTGCCATCAAGATTGTTTGAACAACTCTTTTCCCTTGTTGTTCTTTACTCCATTTGCTATTTTTCCAATCTTCTCGATGTAAACATTGTCCTCAAATTTAGTTTAACTCTACGCAAACTCGAAAAACGTAATACAAGTTGTTGCAAAGCGAGTCTTGGCGGTCTTATCAACTCTTGTCCATTAGTGTATTGCCTCATCATGTTCAATAATCCAGGACGACCGTAAATAAAATTGCTAACCTCTATTGCTCTTTTTAGTGTTCTTCGGATATTCGAGATCTTGAAGATATCCTCCAACATCAAATCCAAGCAATGAGCAGCGCATGGTGACCAAAACAAGTGCGGTCGTTTTGGTTCTAATAATCTCCTAATAGATAATAAACAAAGCACATGTTTATAAAATTGACAAATGTTAAATACATTAATCAACTTTCAAGAAGATAAGACATAAGAGTACATTAGTCAAATTCTTACCTGCCATCACATTTGCAGAGGCACTATCTGTAACAACTTGTATCACATACTCTTCTCCAATCTTTTCAACAAAATCATCTAACAATTGAAACATTTTCAACCCATCCTTTACATACGAAGATGCATCAATGGATTCAACGAACATTGTTCCTTTCGGACTATTAACTAAAAAGTTTAGCAAAGTCCTATTTCTTCGATCTGTCCATCCATCCGTCATGATGGTGCATCCAACTTTCTTCCATTCTTCCTTATGATTTTTCAACAAATCGTCTGTTATTTTCAACTCCTTTTTCAAGCATGGAACTCGTAGTTCATGATATGTAGGCGGCTTCAATCCAGGACCAAATTGGCCTATTGCTTCAATCATAGGTCCGAAACTACTACTATTACAAGCATTCAATGGTATTCCAGAATCATAAAACCATCTAGCAATTGTTTGGATGGTTTTCTCCCTCATTTCCTTGTTGTAAGCGGCATTTATTGTTGTTTGTTTTCCTTTTTCATCCTTTTGAATCGCAATTTTTGGATTTCGAGCAAAAAAAGAATCCATCGGACCCTTTTGTTTCGCCTTCTTTACAGCGGTTGAACTTGTTGATGACGTCGACGATCTCTTGTTTCCAGAAAAACAATAAATACTATCCTCATCTTCATCTTCTGCTTCAAGTGTATAATCACTTTCAGGAATGATCAAATTTCTTTGTTCTTTCAACTCCTTTCTATTTGACATATATGCTTGAAGTTCGTTCTTTACATGTTCTGGGCATTTTCTACATGCCGTTACATTTCTATGACACCCGACTAGGTGTTGTTTCATTCTATACACTCCTCCTTTTGTTACTTTATCACAAAAACTACATATGAAAGTATTTACGTCTTCGGGCTTTACCAAACGAGAATACTTCCAAGCTGGATCTTTTTTCTGACTTCGTTCCTCAGTCATAATAAAAAGTTGATTGACAATCTGATTATATAATATAAAATCAGCCAGCCATAAATCAACTAGCTTCTAAAACTCAATATTTATCTAACTATAGTCTATAAAGTGTGAGTTCATCACTATGAATATGATAGTGAATGAAAGTGAAAGAAATCAAAATCATCCCTGATTCCCTACCCTAGGCAGCTGATGGTTTGTCAAGGATGATTAAGTGGTTTTGTAGTCACTATTATGATTTTTCAGCATTCTTATCATTGTGAATGAAAAAAAGAAAAAGAAAAAGAAAATAACAGGAGAAGGAAAACGAAAAAAAAGAAGAAATAGAAATGGTGTGCATCACTGTAAATGAAGAAAAGGAATCGTACTTACTTTAACCACAAAGAATCGCAAGACAATAGAGAAGAAGACGAAGGAGCATGGCCACCAAGAATCTAAGATAAATCGTATGAAAGAAGGAGGAAGACGTTGAAAAGAAGGGGAAGAAGAGTGAAGAGGACTGTGTTTGAAAGAAGGAGAAATCGTATTTTTAGGGTTTTGTTTTTTGTTGTTTTAAGCTGTTCGATAGATGATTTTTTTTTAAAGAAAAAAAACGAGCGAAAAGACGTCGTTTTGAGTTAAAATTAGAAAATTAAAAAAAAAATACAAAAGCGACTTAGTCGCGCGCCTTGCCGCGACCAACGCCTTTTGGAAAATCGCCAATAGGCGCGCGCTTAAGTATCTTCGCCTCGCCTCGCCAAGACGAAGCGTTGTGTGCTCGATTCTCGCCTGGGCGCGCCTTTTAAAACACTGGTTTTCCTAAAAATAAATAGAAATATTTGAATTTGATTTTTCAGTCAGTTCTCAATTTCTTAACTGTGTTGATTTGTGACAGTTTTGGTCACCCAACTTACATCTTCTGATCTTTAGCTGGGACTGTTTGACATATTTGAACATAGGAAATGGATTATGTGGTGGCACCTGGAAATCTCCCACCATGAAAAAATACATGTTATTTGTTTGTTTGAACGTATATTATTAACTATTGTGGCCTGATTTGCTTATTGAAGGATTTCTTTAAGCTGACTATTCTGCATTGCTGTGCTGTTATTCTTCATGATTCTCTTCTTATTGTTGGTTGATTTTAGTGTATGAAATGAATATGCGTTATCAATTTAGTACTTCTGGCATTCCCTGTGATTTTAGTGCAAGAGCTGCACTAAGCCAGCGTTCCTCTGGGACAAATACCGAAGGAAGATTTTATGCTTAGGACTTGGCCATGAAATAGTACTCTGTACTTAAATAAAAAAAAGGCATTGAAGTGTTATTCTTTGTATTCTGCATCGATTATTTGTACTTCTGTTGTATTTTCTTCTAACATCCTTTTGCATTCGGTCTAAATCATGTTTCACATGATAGTTTTACTCCATCTTAACATAGTTTGAATGGTCTAAATATTAACATTTTAGTCAAGCATTCTTCCCACTGTTTAGCCACCTCCTTGGAAGGTTCACATTTTTGTTCTATGTTTGAATTATTATGTTAAGAATGATATTTCCATTCAATTAATGCTCCTGGTATTATTTTGTTAGTCATGTTCTTCATTCAGGCAAGTGCCGTTCTAATTGGAAAAGTTAACACCATTCTTAGTCCTGAATGTCTTCTACTTGATATAAGACTTTACAATATATCAAAATAAATGTTTTTTAATATCCGTGACTGTCCGGGCCAGCTTGCGCGTACCTCGACTGATGTCACGGGACATATCATCTGGCTCTACAACATCTAGATGTCAATGAAACTTGTAGGAAATTATTTCCTAGGTAGATGACCAACATGGATTTAACCCATCACCTTTAACACCCTCACGCCTTCTTTGACCACTAGGTCATTCTATGATGGTTATATATCAAAATAAATGTTAGAAAAAATTGAGGAGCATTAAGTCTAAGTGTACATATGATCAATACTTGACATTTGTTTATATGGCAGTACGAGCAGATGGTGCTGGTGGATTTGATTATGAAGGGCCATGTAGAACCAGACCAAAAGGTTGGCTGTGGGATTACTGCTTTCCAAATCCAATTCCATCCTATGTGGAAAAGCAAGTGCTTCTTCCTCATAAGGGAAGATGGGTCTGCTGATGACTTCAGCTTCAGGAAATGTGTGGATCATATTCTTCCTCTGCCTGAAAACTTCAAGCCAAAATCTGATGCGAATAGGGCTCTAGGAGGCGGTAAGCACCGCGGTGGAGGACGTGGTGGCGGTGGACGTGGAAGAGGAGGCAGGTGGAGAAACTGATGTTTTTCCATGTCTTGTGTGTTTTTCAGTTTCACCATGTTGCTGTTGTTGGCCTCTTGAGTTCAAGGATGAAGGTGGAGAAATATTTTGTTTATGTATTTTGAACATACATTATGAGTCATTATGGAAGAATGAGTTTTTGCTTGAATACTTTCCTTTTCTTTTAGTTCAAAACTCTGACCAGTCGATGATAAATATCTTAATCAATTAGAGACTAAGCTAAAGTTTCAATATGATAAGTTTTGTTTTCCTTA

mRNA sequence

TGCAAAACTAGGGTTTTAGTCTCTTTGTCAGTTCCAACTTCAGAGCTCACTTAAAAATGGCGGAAGAGACAACCCCTGAACTCGCCGGAAACAACCCGGAGGTAACCAATCCGGTCACCGAAGATATGGAACTCGAAAGCACCGATCCGAAAGGATCCAGCGGCGATTCGGCTGCAACGAATGGAGATGCAAATTCGAAGCGAGAAAGGGAGGAAAATAGCGCCGATGACAGTGCCGGAGAGGCGAAGAAGCCGAAGGTGGAGACGTCGGTTGAAGAGGAAAGGCTTGAGAAGGTGGAACGAGAAGGGAAAGGCGAGGAGGAGGAGCATGGTCCGGTGAGTTTAGGCCCAAAAAGCTTCGGATCATCGGTGGAGTTGTTCGATTACTTCTACAAGTTCCTCCACCACTGGCCAGTCAACTTGAGCGTGAATCAGTACGAGCAGATGGTGCTGGTGGATTTGATTATGAAGGGCCATGTAGAACCAGACCAAAAGGTTGGCTGTGGGATTACTGCTTTCCAAATCCAATTCCATCCTATGTGGAAAAGCAAGTGCTTCTTCCTCATAAGGGAAGATGGGTCTGCTGATGACTTCAGCTTCAGGAAATGTGTGGATCATATTCTTCCTCTGCCTGAAAACTTCAAGCCAAAATCTGATGCGAATAGGGCTCTAGGAGGCGGTAAGCACCGCGGTGGAGGACGTGGTGGCGGTGGACGTGGAAGAGGAGGCAGGTGGAGAAACTGATGTTTTTCCATGTCTTGTGTGTTTTTCAGTTTCACCATGTTGCTGTTGTTGGCCTCTTGAGTTCAAGGATGAAGGTGGAGAAATATTTTGTTTATGTATTTTGAACATACATTATGAGTCATTATGGAAGAATGAGTTTTTGCTTGAATACTTTCCTTTTCTTTTAGTTCAAAACTCTGACCAGTCGATGATAAATATCTTAATCAATTAGAGACTAAGCTAAAGTTTCAATATGATAAGTTTTGTTTTCCTTA

Coding sequence (CDS)

ATGGCGGAAGAGACAACCCCTGAACTCGCCGGAAACAACCCGGAGGTAACCAATCCGGTCACCGAAGATATGGAACTCGAAAGCACCGATCCGAAAGGATCCAGCGGCGATTCGGCTGCAACGAATGGAGATGCAAATTCGAAGCGAGAAAGGGAGGAAAATAGCGCCGATGACAGTGCCGGAGAGGCGAAGAAGCCGAAGGTGGAGACGTCGGTTGAAGAGGAAAGGCTTGAGAAGGTGGAACGAGAAGGGAAAGGCGAGGAGGAGGAGCATGGTCCGGTGAGTTTAGGCCCAAAAAGCTTCGGATCATCGGTGGAGTTGTTCGATTACTTCTACAAGTTCCTCCACCACTGGCCAGTCAACTTGAGCGTGAATCAGTACGAGCAGATGGTGCTGGTGGATTTGATTATGAAGGGCCATGTAGAACCAGACCAAAAGGTTGGCTGTGGGATTACTGCTTTCCAAATCCAATTCCATCCTATGTGGAAAAGCAAGTGCTTCTTCCTCATAAGGGAAGATGGGTCTGCTGATGACTTCAGCTTCAGGAAATGTGTGGATCATATTCTTCCTCTGCCTGAAAACTTCAAGCCAAAATCTGATGCGAATAGGGCTCTAGGAGGCGGTAAGCACCGCGGTGGAGGACGTGGTGGCGGTGGACGTGGAAGAGGAGGCAGGTGGAGAAACTGA

Protein sequence

MAEETTPELAGNNPEVTNPVTEDMELESTDPKGSSGDSAATNGDANSKREREENSADDSAGEAKKPKVETSVEEERLEKVEREGKGEEEEHGPVSLGPKSFGSSVELFDYFYKFLHHWPVNLSVNQYEQMVLVDLIMKGHVEPDQKVGCGITAFQIQFHPMWKSKCFFLIREDGSADDFSFRKCVDHILPLPENFKPKSDANRALGGGKHRGGGRGGGGRGRGGRWRN

Homology

[Close]

BLAST of Sed0020544 vs. NCBI nr
Match: XP_022933555.1 (protein EMBRYO DEFECTIVE 514-like [Cucurbita moschata])

HSP 1 Score: 354.4 bits (908), Expect = 7.5e-94
Identity = 189/234 (80.77%), Postives = 200/234 (85.47%), Query Frame = 0


Query: 1   MAEETTPELAGNNPEVTNPVTEDMELESTDPKGSSGDSAA------TNGDANSKREREEN 60
           MAEET P+LA N PEVTN   EDMELEST+PK S GDS A      TNGDANSKREREE 
Sbjct: 1   MAEETIPQLAENGPEVTNSAAEDMELESTEPKVSGGDSDANEAAPVTNGDANSKREREEE 60

Query: 61  SADDSAGEAKKPKVETSVEEERLEKVEREGKGEEEEHGPVSLGPKSFGSSVELFDYFYKF 120
            ADD AGEAKKPKVE SVEEERLEKVER+GKG EEEHGPVSLGPKSFGSSVELFDYFY F
Sbjct: 61  GADDHAGEAKKPKVEKSVEEERLEKVERDGKG-EEEHGPVSLGPKSFGSSVELFDYFYNF 120

Query: 121 LHHWPVNLSVNQYEQMVLVDLIMKGHVEPDQKVGCGITAFQIQFHPMWKSKCFFLIREDG 180
           LH+WP NL+VNQYE MVL+DLI KGHVEPD+K+GCG+ A QI++HPMWKSKCFFLIREDG
Sbjct: 121 LHYWPANLNVNQYELMVLLDLIKKGHVEPDKKIGCGVRACQIRYHPMWKSKCFFLIREDG 180

Query: 181 SADDFSFRKCVDHILPLPENFKPKSDANRALGGGKHRGGGRGGGGRGRGGRWRN 229
           SADDFSFRKCVDHILPLPEN K  SDANRALGGGKHRGGGRGG     GGRWRN
Sbjct: 181 SADDFSFRKCVDHILPLPENLKTISDANRALGGGKHRGGGRGG-----GGRWRN 228

[Close]

BLAST of Sed0020544 vs. NCBI nr
Match: KAG7021514.1 (Protein EMBRYO DEFECTIVE [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 353.2 bits (905), Expect = 1.7e-93
Identity = 188/234 (80.34%), Postives = 199/234 (85.04%), Query Frame = 0


Query: 1   MAEETTPELAGNNPEVTNPVTEDMELESTDPKGSSGDSAA------TNGDANSKREREEN 60
           MAEET P+LA N PEVTN   EDMELEST+PK S GDS A      TNGDANSKREREE 
Sbjct: 1   MAEETIPQLAENGPEVTNSAAEDMELESTEPKVSGGDSEANEAAPVTNGDANSKREREEE 60

Query: 61  SADDSAGEAKKPKVETSVEEERLEKVEREGKGEEEEHGPVSLGPKSFGSSVELFDYFYKF 120
            ADD AGEAKKPKVE SVEEERLEKVER+GKG EEEHGPVSLGPKSFGSSVELFDYFY F
Sbjct: 61  GADDHAGEAKKPKVEKSVEEERLEKVERDGKG-EEEHGPVSLGPKSFGSSVELFDYFYNF 120

Query: 121 LHHWPVNLSVNQYEQMVLVDLIMKGHVEPDQKVGCGITAFQIQFHPMWKSKCFFLIREDG 180
           LH+WP NL+VNQYE MVL+DLI KGHVEPD+K+GCG+ A QI++HPMWKSKCFFLIREDG
Sbjct: 121 LHYWPANLNVNQYELMVLLDLIKKGHVEPDKKIGCGVRACQIRYHPMWKSKCFFLIREDG 180

Query: 181 SADDFSFRKCVDHILPLPENFKPKSDANRALGGGKHRGGGRGGGGRGRGGRWRN 229
           SADDFSFRKCVDHILPLPEN K  SDANRALGGGKHRGGGRG      GGRWRN
Sbjct: 181 SADDFSFRKCVDHILPLPENLKTISDANRALGGGKHRGGGRG------GGRWRN 227

[Close]

BLAST of Sed0020544 vs. NCBI nr
Match: XP_022972943.1 (protein EMBRYO DEFECTIVE 514-like [Cucurbita maxima])

HSP 1 Score: 348.2 bits (892), Expect = 5.4e-92
Identity = 186/234 (79.49%), Postives = 198/234 (84.62%), Query Frame = 0


Query: 1   MAEETTPELAGNNPEVTNPVTEDMELESTDPKGSSGDSAA------TNGDANSKREREEN 60
           MAEET P+LA N PEVTN   EDMELEST+PK S GDS A      TNGDANSKREREE 
Sbjct: 1   MAEETIPQLAENGPEVTNSAAEDMELESTEPKVSGGDSDANEAAPVTNGDANSKREREEE 60

Query: 61  SADDSAGEAKKPKVETSVEEERLEKVEREGKGEEEEHGPVSLGPKSFGSSVELFDYFYKF 120
            A D  GEAKKPKVE SVEEERLEKVER+GKG EEEHGPVSLGPKSFGSSVELF+YFY F
Sbjct: 61  GAGDYVGEAKKPKVEKSVEEERLEKVERDGKG-EEEHGPVSLGPKSFGSSVELFEYFYNF 120

Query: 121 LHHWPVNLSVNQYEQMVLVDLIMKGHVEPDQKVGCGITAFQIQFHPMWKSKCFFLIREDG 180
           LH+WP NL+VNQYE MVL+DLI KGHVEPD+K+GCG+ A QI++HPMWKSKCFFLIREDG
Sbjct: 121 LHYWPANLNVNQYELMVLLDLIKKGHVEPDKKIGCGVRACQIRYHPMWKSKCFFLIREDG 180

Query: 181 SADDFSFRKCVDHILPLPENFKPKSDANRALGGGKHRGGGRGGGGRGRGGRWRN 229
           SADDFSFRKCVDHILPLPEN K  SDANRALGGGKHRGGGRGG     GGRWRN
Sbjct: 181 SADDFSFRKCVDHILPLPENLKTISDANRALGGGKHRGGGRGG-----GGRWRN 228

[Close]

BLAST of Sed0020544 vs. NCBI nr
Match: XP_023529405.1 (protein EMBRYO DEFECTIVE 514-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 344.0 bits (881), Expect = 1.0e-90
Identity = 185/234 (79.06%), Postives = 196/234 (83.76%), Query Frame = 0


Query: 1   MAEETTPELAGNNPEVTNPVTEDMELESTDPKGSSGDSAA------TNGDANSKREREEN 60
           MAEET P+L  N PEVTN   EDMELEST+PK S GDS A      TNGDANSKREREE 
Sbjct: 1   MAEETIPQLGENGPEVTNSSAEDMELESTEPKVSGGDSDANEAAPVTNGDANSKREREEE 60

Query: 61  SADDSAGEAKKPKVETSVEEERLEKVEREGKGEEEEHGPVSLGPKSFGSSVELFDYFYKF 120
            A D  GEAKK KVE SVEEERLEKVER+GKG EEEHGPVSLGPKSFGSSVELFDYFY F
Sbjct: 61  GAGDCVGEAKKLKVEKSVEEERLEKVERDGKG-EEEHGPVSLGPKSFGSSVELFDYFYNF 120

Query: 121 LHHWPVNLSVNQYEQMVLVDLIMKGHVEPDQKVGCGITAFQIQFHPMWKSKCFFLIREDG 180
           LH+WP NL+VNQYE MVL+DLI KGHVEPD+K+GCG+ A QI++HPMWKSKCFFLIREDG
Sbjct: 121 LHYWPANLNVNQYELMVLLDLIKKGHVEPDKKIGCGVRACQIRYHPMWKSKCFFLIREDG 180

Query: 181 SADDFSFRKCVDHILPLPENFKPKSDANRALGGGKHRGGGRGGGGRGRGGRWRN 229
           SADDFSFRKCVDHILPLPEN K  SDANRALGGGKHRGGGRGG     GGRWRN
Sbjct: 181 SADDFSFRKCVDHILPLPENLKTISDANRALGGGKHRGGGRGG-----GGRWRN 228

[Close]

BLAST of Sed0020544 vs. NCBI nr
Match: XP_022135230.1 (protein EMBRYO DEFECTIVE 514 [Momordica charantia])

HSP 1 Score: 328.9 bits (842), Expect = 3.4e-86
Identity = 179/239 (74.90%), Postives = 206/239 (86.19%), Query Frame = 0


Query: 1   MAEETTPELAGNNPEVTNPVTEDMELEST----DPKGSSGDSAA------TNGDANSKRE 60
           MAEETTP+LA N+PEVTN  TEDMELE++    +PKG +GDS A      TNGDANSKRE
Sbjct: 1   MAEETTPQLAENDPEVTNSATEDMELETSEPGAEPKGLNGDSEANEAAPETNGDANSKRE 60

Query: 61  REENSADDSAGEAKKPKVETSVEEERLEKVEREGKGEEEEHGPVSLGPKSFGSSVELFDY 120
           REE +AD++ GEAKKPKVE SVEEER+EKVE +GKG+E+  GPVSLGPKSFGSSVE+FDY
Sbjct: 61  REEETADENIGEAKKPKVEKSVEEERMEKVEGDGKGDEKS-GPVSLGPKSFGSSVEMFDY 120

Query: 121 FYKFLHHWPVNLSVNQYEQMVLVDLIMKGHVEPDQKVGCGITAFQIQFHPMWKSKCFFLI 180
           FYKFLH+WP NL++N+YEQMVL++L+ KGHVEP++K+GCGI AFQI+ HP +KSKC+FLI
Sbjct: 121 FYKFLHYWPANLNLNEYEQMVLLELLKKGHVEPEKKIGCGIHAFQIRNHPTFKSKCYFLI 180

Query: 181 REDGSADDFSFRKCVDHILPLPENFKPKSDANRALGGGKHRGGGR-GGGGRGRGGRWRN 229
           RED S DDFSFRKCVDHILPLPEN K KSDANRALGG KHRGGGR GGGGRGRGGR RN
Sbjct: 181 REDESVDDFSFRKCVDHILPLPENLKVKSDANRALGGCKHRGGGRGGGGGRGRGGRSRN 238

[Close]

BLAST of Sed0020544 vs. ExPASy Swiss-Prot
Match: Q8L557 (Protein EMBRYO DEFECTIVE 514 OS=Arabidopsis thaliana OX=3702 GN=EMB514 PE=1 SV=1)

HSP 1 Score: 203.4 bits (516), Expect = 2.8e-51
Identity = 121/229 (52.84%), Postives = 147/229 (64.19%), Query Frame = 0


Query: 1   MAEETTPELAGNNPEVTNPVTE-DMELESTDPKGSSGDSAATNGDANSKREREENSADDS 60
           MAEE   E+  +     NP  + DME+E+  PK  +GD          KREREE   +++
Sbjct: 1   MAEE--QEIVDSLSAEVNPDQKVDMEVETATPKAETGD---------EKREREETEEEEN 60

Query: 61  AGEAKKPKVETSVEEERLEKVEREGKGEEEEHGPVSLGPKSFGSSVELFDYFYKFLHHWP 120
            GE+KK KV                 GEEE+ GPV LGPK F +SV +FDYF KFLH WP
Sbjct: 61  GGESKKQKV-----------------GEEEKSGPVKLGPKEFVTSVAMFDYFVKFLHFWP 120

Query: 121 VNLSVNQYEQMVLVDLIMKGHVEPDQKVGCGITAFQIQFHPMWKSKCFFLIREDGSADDF 180
            +L VN+YE MVL+DLI KGH EP++K+G GI  FQ++ HPMWKS+CFFL+RED +ADDF
Sbjct: 121 TDLDVNKYEHMVLLDLIKKGHSEPEKKIGGGIKTFQVRTHPMWKSRCFFLVREDDTADDF 180

Query: 181 SFRKCVDHILPLPENFKPKSDANRALGGGKHRGGG-RGGGGRGRGGRWR 228
           SFRKCVD ILPLPEN K         GGG+  GGG RGG G GRGGR+R
Sbjct: 181 SFRKCVDQILPLPENMKTPGANGNGHGGGRGGGGGRRGGRGGGRGGRFR 201

[Close]

BLAST of Sed0020544 vs. ExPASy Swiss-Prot
Match: Q42463 (Protein DCL, chloroplastic OS=Solanum lycopersicum OX=4081 GN=DCL PE=2 SV=1)

HSP 1 Score: 54.3 bits (129), Expect = 2.1e-06
Identity = 39/142 (27.46%), Postives = 72/142 (50.70%), Query Frame = 0


Query: 58  DSAGEAKKP----KVETSVEEERLEKVERE---GKGEEEEHGPVSLGPKSFGSSVELFDY 117
           D+A   +KP    ++ET+ E E L K E +   GK   +  G V    +    +V L  +
Sbjct: 60  DNAELLRKPVISTELETTSESEELVKEESDDEVGKKSGDGEGWVDWEDQILEDTVPLVGF 119

Query: 118 FYKFLH--HWPVNLSVNQYEQMVLVDLIMKGHVEPDQKVGCGITAFQIQFHPMWK-SKCF 177
               LH   + +   ++   Q  ++  ++  H E D+K+G G+    + +HP ++ S+C 
Sbjct: 120 VRMILHSGKYAIGDRLSPDHQRTILQRLLPYHPECDKKIGPGVDYITVGYHPDFENSRCL 179

Query: 178 FLIREDGSADDFSFRKCVDHIL 190
           F++R+DG   DFS+ KC+  ++
Sbjct: 180 FIVRKDGETVDFSYWKCIKGLI 201

[Close]

BLAST of Sed0020544 vs. ExPASy Swiss-Prot
Match: Q9LQ02 (DNA-directed RNA polymerase IV subunit 1 OS=Arabidopsis thaliana OX=3702 GN=NRPD1 PE=1 SV=1)

HSP 1 Score: 49.3 bits (116), Expect = 6.7e-05
Identity = 22/73 (30.14%), Postives = 43/73 (58.90%), Query Frame = 0


Query: 113  KFLHHWPVNLSVNQYEQMVLVDLIMKGHVEPDQKVGCGITAFQIQFHPMWKSKCFFLIRE 172
            + LH + +N  +N+ ++  LV ++++ H    +K+G G+   ++       S CF ++R 
Sbjct: 1348 RILHSYEINELLNERDE-GLVKMVLQLHPNSVEKIGPGVKGIRVAKSKHGDSCCFEVVRI 1407

Query: 173  DGSADDFSFRKCV 186
            DG+ +DFS+ KCV
Sbjct: 1408 DGTFEDFSYHKCV 1419

[Close]

BLAST of Sed0020544 vs. ExPASy Swiss-Prot
Match: Q5D869 (DNA-directed RNA polymerase V subunit 1 OS=Arabidopsis thaliana OX=3702 GN=NRPE1 PE=1 SV=1)

HSP 1 Score: 47.8 bits (112), Expect = 2.0e-04
Identity = 19/73 (26.03%), Postives = 43/73 (58.90%), Query Frame = 0


Query: 118  WPVNLSVNQYEQMVLVDLIMKGHVEPDQKVGCGITAFQIQFHPMWK-SKCFFLIREDGSA 177
            +P    ++  ++  +++ I+  H + + K+G G+    +  H ++  S+CFF++  DG+ 
Sbjct: 1759 YPDGDPISDDDKTFVLEKILNFHPQKETKLGSGVDFITVDKHTIFSDSRCFFVVSTDGAK 1818

Query: 178  DDFSFRKCVDHIL 190
             DFS+RK +++ L
Sbjct: 1819 QDFSYRKSLNNYL 1831

[Close]

BLAST of Sed0020544 vs. ExPASy Swiss-Prot
Match: Q9C642 (Protein DCL homolog, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=DCL PE=2 SV=1)

HSP 1 Score: 46.6 bits (109), Expect = 4.4e-04
Identity = 42/164 (25.61%), Postives = 79/164 (48.17%), Query Frame = 0


Query: 36  GDSAATNGDANSKREREE-----NSADDSAGEAKKPKV--ETSVEEERLEKVEREGKGEE 95
           GDS +      + R   +     NS    +   ++P++  E S EEE  E+ E   +G+E
Sbjct: 38  GDSTSLRPRVRALRTESDGAKIGNSESYGSELLRRPRIASEESSEEEE-EEEEENSEGDE 97

Query: 96  EEHGPVSLGPKSFGSSVELFDYFYKFLH--HWPVNLSVNQYEQMVLVDLIMKGHVEPDQK 155
                V    K    +V L  +    LH   +     ++   +  ++++++  H E ++K
Sbjct: 98  F----VDWEDKILEVTVPLVGFVRMILHSGKYANRDRLSPEHERTIIEMLLPYHPECEKK 157

Query: 156 VGCGITAFQIQFHPMWK-SKCFFLIREDGSADDFSFRKCVDHIL 190
           +GCGI    +  HP ++ S+C F++R+DG   DFS+ KC+  ++
Sbjct: 158 IGCGIDYIMVGHHPDFESSRCMFIVRKDGEVVDFSYWKCIKGLI 196

[Close]

BLAST of Sed0020544 vs. ExPASy TrEMBL
Match: A0A6J1F569 (protein EMBRYO DEFECTIVE 514-like OS=Cucurbita moschata OX=3662 GN=LOC111440949 PE=4 SV=1)

HSP 1 Score: 354.4 bits (908), Expect = 3.6e-94
Identity = 189/234 (80.77%), Postives = 200/234 (85.47%), Query Frame = 0


Query: 1   MAEETTPELAGNNPEVTNPVTEDMELESTDPKGSSGDSAA------TNGDANSKREREEN 60
           MAEET P+LA N PEVTN   EDMELEST+PK S GDS A      TNGDANSKREREE 
Sbjct: 1   MAEETIPQLAENGPEVTNSAAEDMELESTEPKVSGGDSDANEAAPVTNGDANSKREREEE 60

Query: 61  SADDSAGEAKKPKVETSVEEERLEKVEREGKGEEEEHGPVSLGPKSFGSSVELFDYFYKF 120
            ADD AGEAKKPKVE SVEEERLEKVER+GKG EEEHGPVSLGPKSFGSSVELFDYFY F
Sbjct: 61  GADDHAGEAKKPKVEKSVEEERLEKVERDGKG-EEEHGPVSLGPKSFGSSVELFDYFYNF 120

Query: 121 LHHWPVNLSVNQYEQMVLVDLIMKGHVEPDQKVGCGITAFQIQFHPMWKSKCFFLIREDG 180
           LH+WP NL+VNQYE MVL+DLI KGHVEPD+K+GCG+ A QI++HPMWKSKCFFLIREDG
Sbjct: 121 LHYWPANLNVNQYELMVLLDLIKKGHVEPDKKIGCGVRACQIRYHPMWKSKCFFLIREDG 180

Query: 181 SADDFSFRKCVDHILPLPENFKPKSDANRALGGGKHRGGGRGGGGRGRGGRWRN 229
           SADDFSFRKCVDHILPLPEN K  SDANRALGGGKHRGGGRGG     GGRWRN
Sbjct: 181 SADDFSFRKCVDHILPLPENLKTISDANRALGGGKHRGGGRGG-----GGRWRN 228

[Close]

BLAST of Sed0020544 vs. ExPASy TrEMBL
Match: A0A6J1IBL1 (protein EMBRYO DEFECTIVE 514-like OS=Cucurbita maxima OX=3661 GN=LOC111471455 PE=4 SV=1)

HSP 1 Score: 348.2 bits (892), Expect = 2.6e-92
Identity = 186/234 (79.49%), Postives = 198/234 (84.62%), Query Frame = 0


Query: 1   MAEETTPELAGNNPEVTNPVTEDMELESTDPKGSSGDSAA------TNGDANSKREREEN 60
           MAEET P+LA N PEVTN   EDMELEST+PK S GDS A      TNGDANSKREREE 
Sbjct: 1   MAEETIPQLAENGPEVTNSAAEDMELESTEPKVSGGDSDANEAAPVTNGDANSKREREEE 60

Query: 61  SADDSAGEAKKPKVETSVEEERLEKVEREGKGEEEEHGPVSLGPKSFGSSVELFDYFYKF 120
            A D  GEAKKPKVE SVEEERLEKVER+GKG EEEHGPVSLGPKSFGSSVELF+YFY F
Sbjct: 61  GAGDYVGEAKKPKVEKSVEEERLEKVERDGKG-EEEHGPVSLGPKSFGSSVELFEYFYNF 120

Query: 121 LHHWPVNLSVNQYEQMVLVDLIMKGHVEPDQKVGCGITAFQIQFHPMWKSKCFFLIREDG 180
           LH+WP NL+VNQYE MVL+DLI KGHVEPD+K+GCG+ A QI++HPMWKSKCFFLIREDG
Sbjct: 121 LHYWPANLNVNQYELMVLLDLIKKGHVEPDKKIGCGVRACQIRYHPMWKSKCFFLIREDG 180

Query: 181 SADDFSFRKCVDHILPLPENFKPKSDANRALGGGKHRGGGRGGGGRGRGGRWRN 229
           SADDFSFRKCVDHILPLPEN K  SDANRALGGGKHRGGGRGG     GGRWRN
Sbjct: 181 SADDFSFRKCVDHILPLPENLKTISDANRALGGGKHRGGGRGG-----GGRWRN 228

[Close]

BLAST of Sed0020544 vs. ExPASy TrEMBL
Match: A0A6J1C0K4 (protein EMBRYO DEFECTIVE 514 OS=Momordica charantia OX=3673 GN=LOC111007244 PE=4 SV=1)

HSP 1 Score: 328.9 bits (842), Expect = 1.6e-86
Identity = 179/239 (74.90%), Postives = 206/239 (86.19%), Query Frame = 0


Query: 1   MAEETTPELAGNNPEVTNPVTEDMELEST----DPKGSSGDSAA------TNGDANSKRE 60
           MAEETTP+LA N+PEVTN  TEDMELE++    +PKG +GDS A      TNGDANSKRE
Sbjct: 1   MAEETTPQLAENDPEVTNSATEDMELETSEPGAEPKGLNGDSEANEAAPETNGDANSKRE 60

Query: 61  REENSADDSAGEAKKPKVETSVEEERLEKVEREGKGEEEEHGPVSLGPKSFGSSVELFDY 120
           REE +AD++ GEAKKPKVE SVEEER+EKVE +GKG+E+  GPVSLGPKSFGSSVE+FDY
Sbjct: 61  REEETADENIGEAKKPKVEKSVEEERMEKVEGDGKGDEKS-GPVSLGPKSFGSSVEMFDY 120

Query: 121 FYKFLHHWPVNLSVNQYEQMVLVDLIMKGHVEPDQKVGCGITAFQIQFHPMWKSKCFFLI 180
           FYKFLH+WP NL++N+YEQMVL++L+ KGHVEP++K+GCGI AFQI+ HP +KSKC+FLI
Sbjct: 121 FYKFLHYWPANLNLNEYEQMVLLELLKKGHVEPEKKIGCGIHAFQIRNHPTFKSKCYFLI 180

Query: 181 REDGSADDFSFRKCVDHILPLPENFKPKSDANRALGGGKHRGGGR-GGGGRGRGGRWRN 229
           RED S DDFSFRKCVDHILPLPEN K KSDANRALGG KHRGGGR GGGGRGRGGR RN
Sbjct: 181 REDESVDDFSFRKCVDHILPLPENLKVKSDANRALGGCKHRGGGRGGGGGRGRGGRSRN 238

[Close]

BLAST of Sed0020544 vs. ExPASy TrEMBL
Match: A0A5A7UQ03 (Protein DCL OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold274G002450 PE=4 SV=1)

HSP 1 Score: 322.4 bits (825), Expect = 1.5e-84
Identity = 181/237 (76.37%), Postives = 199/237 (83.97%), Query Frame = 0


Query: 1   MAEETTPELAGNNPEVTNPVTEDMELESTDPKGSSGDSAAT------NGDANSKREREEN 60
           MAEET P+L   +PEVTN  TEDMELE+T PKGSS  S AT      NGDANSKREREE 
Sbjct: 1   MAEETIPQL---DPEVTNSGTEDMELETTVPKGSSDASEATEAAPVINGDANSKREREE- 60

Query: 61  SADDSAGEAKKPKVETSVEEERLEKVEREGKGEEEEHGPVSLGPKSFGSSVELFDYFYKF 120
           SADD  G+ KK K+E SVEEER+EK+  +GK EEE   PVSLGPKSF SSVELFDYFYK 
Sbjct: 61  SADDGVGDGKKQKIEKSVEEERVEKLGGDGKCEEEP-VPVSLGPKSFRSSVELFDYFYKI 120

Query: 121 LHHWPVNLSVNQYEQMVLVDLIMKGHVEPDQKVGCGITAFQIQFHPMWKSKCFFLIREDG 180
           LH+WP+NL+VNQYEQMVLVDL+ KGH+EP++K+GCGI AFQI+FHP+WKSKCFFLIRED 
Sbjct: 121 LHNWPINLNVNQYEQMVLVDLLKKGHLEPEKKIGCGIQAFQIRFHPVWKSKCFFLIREDE 180

Query: 181 SADDFSFRKCVDHILPLPENFKPKSDANRALGGGKHRGGGRGGG---GRGRGGRWRN 229
           SADDFSFRKCVDHILPLPENFK KSDANRALGGGKHRGGGRGGG   GRG GGRWRN
Sbjct: 181 SADDFSFRKCVDHILPLPENFKAKSDANRALGGGKHRGGGRGGGGGRGRGGGGRWRN 232

[Close]

BLAST of Sed0020544 vs. ExPASy TrEMBL
Match: A0A1S3BWT9 (protein DCL, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103493992 PE=4 SV=1)

HSP 1 Score: 322.4 bits (825), Expect = 1.5e-84
Identity = 181/237 (76.37%), Postives = 199/237 (83.97%), Query Frame = 0


Query: 1   MAEETTPELAGNNPEVTNPVTEDMELESTDPKGSSGDSAAT------NGDANSKREREEN 60
           MAEET P+L   +PEVTN  TEDMELE+T PKGSS  S AT      NGDANSKREREE 
Sbjct: 1   MAEETIPQL---DPEVTNSGTEDMELETTVPKGSSDASEATEAAPVINGDANSKREREE- 60

Query: 61  SADDSAGEAKKPKVETSVEEERLEKVEREGKGEEEEHGPVSLGPKSFGSSVELFDYFYKF 120
           SADD  G+ KK K+E SVEEER+EK+  +GK EEE   PVSLGPKSF SSVELFDYFYK 
Sbjct: 61  SADDGVGDGKKQKIEKSVEEERVEKLGGDGKCEEEP-VPVSLGPKSFRSSVELFDYFYKI 120

Query: 121 LHHWPVNLSVNQYEQMVLVDLIMKGHVEPDQKVGCGITAFQIQFHPMWKSKCFFLIREDG 180
           LH+WP+NL+VNQYEQMVLVDL+ KGH+EP++K+GCGI AFQI+FHP+WKSKCFFLIRED 
Sbjct: 121 LHNWPINLNVNQYEQMVLVDLLKKGHLEPEKKIGCGIQAFQIRFHPVWKSKCFFLIREDE 180

Query: 181 SADDFSFRKCVDHILPLPENFKPKSDANRALGGGKHRGGGRGGG---GRGRGGRWRN 229
           SADDFSFRKCVDHILPLPENFK KSDANRALGGGKHRGGGRGGG   GRG GGRWRN
Sbjct: 181 SADDFSFRKCVDHILPLPENFKAKSDANRALGGGKHRGGGRGGGGGRGRGGGGRWRN 232

[Close]

BLAST of Sed0020544 vs. TAIR 10
Match: AT5G62440.1 (Protein of unknown function (DUF3223) )

HSP 1 Score: 203.4 bits (516), Expect = 2.0e-52
Identity = 121/229 (52.84%), Postives = 147/229 (64.19%), Query Frame = 0


Query: 1   MAEETTPELAGNNPEVTNPVTE-DMELESTDPKGSSGDSAATNGDANSKREREENSADDS 60
           MAEE   E+  +     NP  + DME+E+  PK  +GD          KREREE   +++
Sbjct: 1   MAEE--QEIVDSLSAEVNPDQKVDMEVETATPKAETGD---------EKREREETEEEEN 60

Query: 61  AGEAKKPKVETSVEEERLEKVEREGKGEEEEHGPVSLGPKSFGSSVELFDYFYKFLHHWP 120
            GE+KK KV                 GEEE+ GPV LGPK F +SV +FDYF KFLH WP
Sbjct: 61  GGESKKQKV-----------------GEEEKSGPVKLGPKEFVTSVAMFDYFVKFLHFWP 120

Query: 121 VNLSVNQYEQMVLVDLIMKGHVEPDQKVGCGITAFQIQFHPMWKSKCFFLIREDGSADDF 180
            +L VN+YE MVL+DLI KGH EP++K+G GI  FQ++ HPMWKS+CFFL+RED +ADDF
Sbjct: 121 TDLDVNKYEHMVLLDLIKKGHSEPEKKIGGGIKTFQVRTHPMWKSRCFFLVREDDTADDF 180

Query: 181 SFRKCVDHILPLPENFKPKSDANRALGGGKHRGGG-RGGGGRGRGGRWR 228
           SFRKCVD ILPLPEN K         GGG+  GGG RGG G GRGGR+R
Sbjct: 181 SFRKCVDQILPLPENMKTPGANGNGHGGGRGGGGGRRGGRGGGRGGRFR 201

[Close]

BLAST of Sed0020544 vs. TAIR 10
Match: AT1G63020.1 (nuclear RNA polymerase D1A )

HSP 1 Score: 49.3 bits (116), Expect = 4.8e-06
Identity = 22/73 (30.14%), Postives = 43/73 (58.90%), Query Frame = 0


Query: 113  KFLHHWPVNLSVNQYEQMVLVDLIMKGHVEPDQKVGCGITAFQIQFHPMWKSKCFFLIRE 172
            + LH + +N  +N+ ++  LV ++++ H    +K+G G+   ++       S CF ++R 
Sbjct: 1348 RILHSYEINELLNERDE-GLVKMVLQLHPNSVEKIGPGVKGIRVAKSKHGDSCCFEVVRI 1407

Query: 173  DGSADDFSFRKCV 186
            DG+ +DFS+ KCV
Sbjct: 1408 DGTFEDFSYHKCV 1419

[Close]

BLAST of Sed0020544 vs. TAIR 10
Match: AT1G63020.2 (nuclear RNA polymerase D1A )

HSP 1 Score: 49.3 bits (116), Expect = 4.8e-06
Identity = 22/73 (30.14%), Postives = 43/73 (58.90%), Query Frame = 0


Query: 113  KFLHHWPVNLSVNQYEQMVLVDLIMKGHVEPDQKVGCGITAFQIQFHPMWKSKCFFLIRE 172
            + LH + +N  +N+ ++  LV ++++ H    +K+G G+   ++       S CF ++R 
Sbjct: 1348 RILHSYEINELLNERDE-GLVKMVLQLHPNSVEKIGPGVKGIRVAKSKHGDSCCFEVVRI 1407

Query: 173  DGSADDFSFRKCV 186
            DG+ +DFS+ KCV
Sbjct: 1408 DGTFEDFSYHKCV 1419

[Close]

BLAST of Sed0020544 vs. TAIR 10
Match: AT1G45230.1 (Protein of unknown function (DUF3223) )

HSP 1 Score: 46.6 bits (109), Expect = 3.1e-05
Identity = 42/164 (25.61%), Postives = 79/164 (48.17%), Query Frame = 0


Query: 36  GDSAATNGDANSKREREE-----NSADDSAGEAKKPKV--ETSVEEERLEKVEREGKGEE 95
           GDS +      + R   +     NS    +   ++P++  E S EEE  E+ E   +G+E
Sbjct: 38  GDSTSLRPRVRALRTESDGAKIGNSESYGSELLRRPRIASEESSEEEE-EEEEENSEGDE 97

Query: 96  EEHGPVSLGPKSFGSSVELFDYFYKFLH--HWPVNLSVNQYEQMVLVDLIMKGHVEPDQK 155
                V    K    +V L  +    LH   +     ++   +  ++++++  H E ++K
Sbjct: 98  F----VDWEDKILEVTVPLVGFVRMILHSGKYANRDRLSPEHERTIIEMLLPYHPECEKK 157

Query: 156 VGCGITAFQIQFHPMWK-SKCFFLIREDGSADDFSFRKCVDHIL 190
           +GCGI    +  HP ++ S+C F++R+DG   DFS+ KC+  ++
Sbjct: 158 IGCGIDYIMVGHHPDFESSRCMFIVRKDGEVVDFSYWKCIKGLI 196

[Close]

BLAST of Sed0020544 vs. TAIR 10
Match: AT1G45230.2 (Protein of unknown function (DUF3223) )

HSP 1 Score: 46.6 bits (109), Expect = 3.1e-05
Identity = 42/164 (25.61%), Postives = 79/164 (48.17%), Query Frame = 0


Query: 36  GDSAATNGDANSKREREE-----NSADDSAGEAKKPKV--ETSVEEERLEKVEREGKGEE 95
           GDS +      + R   +     NS    +   ++P++  E S EEE  E+ E   +G+E
Sbjct: 38  GDSTSLRPRVRALRTESDGAKIGNSESYGSELLRRPRIASEESSEEEE-EEEEENSEGDE 97

Query: 96  EEHGPVSLGPKSFGSSVELFDYFYKFLH--HWPVNLSVNQYEQMVLVDLIMKGHVEPDQK 155
                V    K    +V L  +    LH   +     ++   +  ++++++  H E ++K
Sbjct: 98  F----VDWEDKILEVTVPLVGFVRMILHSGKYANRDRLSPEHERTIIEMLLPYHPECEKK 157

Query: 156 VGCGITAFQIQFHPMWK-SKCFFLIREDGSADDFSFRKCVDHIL 190
           +GCGI    +  HP ++ S+C F++R+DG   DFS+ KC+  ++
Sbjct: 158 IGCGIDYIMVWHHPDFESSRCMFIVRKDGEVVDFSYWKCIKGLI 196

The following BLAST results are available for this feature:

BLAST of Sed0020544 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022933555.1	7.5e-94	80.77	protein EMBRYO DEFECTIVE 514-like [Cucurbita moschata]	[more]
KAG7021514.1	1.7e-93	80.34	Protein EMBRYO DEFECTIVE [Cucurbita argyrosperma subsp. argyrosperma]	[more]
XP_022972943.1	5.4e-92	79.49	protein EMBRYO DEFECTIVE 514-like [Cucurbita maxima]	[more]
XP_023529405.1	1.0e-90	79.06	protein EMBRYO DEFECTIVE 514-like [Cucurbita pepo subsp. pepo]	[more]
XP_022135230.1	3.4e-86	74.90	protein EMBRYO DEFECTIVE 514 [Momordica charantia]	[more]

BLAST of Sed0020544 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8L557	2.8e-51	52.84	Protein EMBRYO DEFECTIVE 514 OS=Arabidopsis thaliana OX=3702 GN=EMB514 PE=1 SV=1	[more]
Q42463	2.1e-06	27.46	Protein DCL, chloroplastic OS=Solanum lycopersicum OX=4081 GN=DCL PE=2 SV=1	[more]
Q9LQ02	6.7e-05	30.14	DNA-directed RNA polymerase IV subunit 1 OS=Arabidopsis thaliana OX=3702 GN=NRPD...	[more]
Q5D869	2.0e-04	26.03	DNA-directed RNA polymerase V subunit 1 OS=Arabidopsis thaliana OX=3702 GN=NRPE1...	[more]
Q9C642	4.4e-04	25.61	Protein DCL homolog, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=DCL PE=2 S...	[more]

BLAST of Sed0020544 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1F569	3.6e-94	80.77	protein EMBRYO DEFECTIVE 514-like OS=Cucurbita moschata OX=3662 GN=LOC111440949 ...	[more]
A0A6J1IBL1	2.6e-92	79.49	protein EMBRYO DEFECTIVE 514-like OS=Cucurbita maxima OX=3661 GN=LOC111471455 PE...	[more]
A0A6J1C0K4	1.6e-86	74.90	protein EMBRYO DEFECTIVE 514 OS=Momordica charantia OX=3673 GN=LOC111007244 PE=4...	[more]
A0A5A7UQ03	1.5e-84	76.37	Protein DCL OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold274G002450 P...	[more]
A0A1S3BWT9	1.5e-84	76.37	protein DCL, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103493992 PE=4 SV=1	[more]

BLAST of Sed0020544 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G62440.1	2.0e-52	52.84	Protein of unknown function (DUF3223)	[more]
AT1G63020.1	4.8e-06	30.14	nuclear RNA polymerase D1A	[more]
AT1G63020.2	4.8e-06	30.14	nuclear RNA polymerase D1A	[more]
AT1G45230.1	3.1e-05	25.61	Protein of unknown function (DUF3223)	[more]
AT1G45230.2	3.1e-05	25.61	Protein of unknown function (DUF3223)	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PFAM	PF11523	DUF3223	coord: 113..185 e-value: 4.8E-24 score: 84.9
None	No IPR available	GENE3D	3.10.450.40		coord: 90..188 e-value: 7.6E-25 score: 89.3
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 10..24
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..98
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 44..94
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 199..228
None	No IPR available	PANTHER	PTHR33415:SF12	PROTEIN EMBRYO DEFECTIVE 514	coord: 16..219
IPR044673	Protein DCL-like	PANTHER	PTHR33415	FAMILY NOT NAMED	coord: 16..219

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0020544.1	Sed0020544.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0017126	nucleologenesis
cellular_component	GO:0005634	nucleus