Sed0020543 (gene) Chayote v1

Overview


Name	Sed0020543
Type	gene
Organism	Sechium edule (Chayote v1)
Description	Serine/threonine-protein phosphatase 7 long form-like
Location	LG04: 47743358 .. 47746453 (+)
RNA-Seq Expression	Sed0020543
Synteny	Sed0020543

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGACGTTATTGGATTTATTGTGTACATGAATGGAAACATTGTCAATGGACCAAACGGTATCGAGTACGATGTTCCACCTTGTACACAAATTAATGCTTCTAGGGACATGGACTTCCACTCATTCGTCAGTGGATTATGTCAAGTGCTTTCATTAGAAAGAAGTGAAGAAATTGAGATTGTTTTTAAGTACGTGACTATTGGGATACCTTTACAAAATGTTAATGAATTCAATTTCATGAAAACCATTGCTACTTCAGAAGCAAGACACTTGTATATTACTCGACCACACATTCAGAGTACATCACAAGTTGAACAATATATGGAGGAAGAACAAATAGAGGAAGACCAAACAGAGGAAGTTAACGAGGAAAATGCCACTTATCCAGAGACAAATACAACCAATGTTGACGACCCGATGTGTACAAATGAATTAGAGAGTCCTCCCACAGACGATGATGACGAGATTCCTCCCGTTGAGGACTTTGAGTCACTCCATGGTGTAGATGTAGTTCCTTCATTTTACACTACGTTGAATATGGATGTTATTGATGCTCTACCGAATAGAGGCATTGAACTAGAGATTCCCAGACCAAACACATTAAGAAAAGGGATGATTTTTTAAAACAAAAATGATTTAAAAAATATCGTTTGGAGTCATGTTGTTCTTCGCCATCAACATTTCAAAGTAATGGAGTCGAAGAAGAAGAAATGGATAATTCAATGTAGTATGCATGAGACTGGATGTAAATGGAGACTCCGAGCATGTTGTCTTAAGAAACACGACAAGTTTGAAATAACTCAGTTGCATGATGCGCACACATGTTTTTATGCGAGGATAAGTCAAGACCACCACTTATTGGATGCTAATCTAATTGCTTCAGAGGTGCAAAACATTATTACAACAGACCCTACTACGAAAAAAAAAGATTTTGAGAAATAATAACAAAAAATATGGATATCAAATATCATATACAAAAGCATGGAATGGTCGTAGGAAAGCTATTGAGATAGTATTTGGGAATTGGGAAGAATCGTATAAACGGCGTAGCGAAGTGGACAACTATCCTACAAGAAACCCACCCTGGTTCATTAGTTCAATATAAGTGGGACGAATTTGTTGGTAACGATAAAGTTGTCCAATTTCACAGTGTGCTCTGGGCATTTGCACCCGCCATTGAAGGGTTTAAGTATTGTAGGCCTCTACTTCAAATAGACGGTACACATTTATACGGCAAATACAAAGGAAAATTATTGATTGCCACTAATGTTGATGCTAACGGCCGTGTATTTCCATTGGCATTTGCAATTGTACCTGAAGAGAGCACTGAATCATGGAGTTGGTTTTTAAAGCTATTATGGATTGCCGTGCAAAAAAGGAAGGGAATATGCCTTATTTCAGATAGGCATAAGGGCATCATAGCTGTCGTTCGGGCTTGTGAATGGGAGGATGTGCATCATCGATTCTGCATACGACATATAGCATCAAACTTCAACAAAAAGTATAAGAATGAAGAGTTGAAGAGATTGGTTTATAGTGCAGCAGCACAATCAATTCCTAGAAAATACAGGGCTATTATGCAACAAATCCAAATGGCTGATAGTGGGTGCATGAGATTCTTTGACTACTTAGACCCCGTTCAATGGACAATTTCACACGATGGTGGATATCGGTATGGATGGTTAACAACCAATGTAGCTGAATCAATTAATGGTGTACTTAAAGGAGCTAGGAAGCTTCCAATATGTGCATTAGTTCAAGCTACATACCATCGAACTTTGACATACTTTGCTAGTAGACGTATTCATGCAGAAGCATCCATTACCAACGGGATACTTTATACTGGGTAAATTCTTCAACCACCACTATAATTTACTATTATATGGATTGATGCTCATTTTGACCTGTCTCTGACCTATATTTTAGGTATGCTATTGCAATACTAAAAAAACGGGAAGAGCGTGCAGATCGACATATAGTCACTATCGTCAATTATACGCTGGGAATTTGTGACATTACCACTGGAAGAGAAGAATCTACTTTTAAGGGTGGGGCAAATCATCGTGTCAAGCTACACAAGAATACGTGTGGTTGCAACAAGTGGCAACAACTTGAGATTCCTTGCTCTCATGCAATTGCTGCATGTAAAGAGTTGCACATAGATTATTTGACTCTTATACAAGACTATTACAAAATGTCAACCTATTTGCAGTGCTACGAGCATGAATTTGAAGGGATCCCAGACAAACGTGATTGGCCAGAGATCGAATGTCCAAAAATCCTTCCCGATCCTACGAAAGTTAGACAAAAGTATATTGTTTCTAAAAATATGTATTTTTATTCAAACAATATGCTTTTAATCTTAGTAGGAAAATATATAATCAATTAAGAGAAGAATGGTTTTAATCACAAGTATATGTGCATAGTAGTTATTGAGGTAAATGGCTGGTTGAAATGTAATTATGAAAAGATTTGAAGATCTGGCCAAAGAAGGCAACTTGGTTATGTGGATTCGTTCTCATTGCATATGTTGAGATAGATTGGATCCTTTCCAGTAATACGTGTGTACCTTAAGACGACTATGATATATTTAAGGGAGCAGTATATTTTTAATCTAATTTTTAGATTTTAAAATGGAAAGAGTTTACCCTGAGCAATACATTTCACATCTACTATTATACTTACGACACAATTTTTAAAATAATTCACATAATTTTCTATCAGCGATAAAATTGAATCAATGAAAGAATGAATTTACTATTAATTAAATTTCTATTAGTGAGAGAACTTAATTGGTGATAGATTTTAATTTTTGGATTTCTATTCAAATGAATTAGTTCTAATTTTGTGCTATAATTAAATGGAAATATTTTGCCATTTTTTATTATACAATGTTCACTAAAATAATGATTTGATCAAATTTAAATTTTAATATATTAATGAAGTAATTATTTTAATTTTTAAAAATAAGTATGTTCAATTTTAAAGTATATGAATTATATCAAAAGTAAGGAAATTTACCTCAGCAACAGTACATTCTTGATTCTACTCTTATATTATATTTACAATATAATTTCTAAAATAATTGATTTATAG

mRNA sequence

ATGGACGTTATTGGATTTATTGTGTACATGAATGGAAACATTGTCAATGGACCAAACGGTATCGAGTACGATGTTCCACCTTGTACACAAATTAATGCTTCTAGGGACATGGACTTCCACTCATTCGTCAGTGGATTATGTCAAGTGCTTTCATTAGAAAGAAGTGAAGAAATTGAGATTGTTTTTAAGTACGTGACTATTGGGATACCTTTACAAAATGTTAATGAATTCAATTTCATGAAAACCATTGCTACTTCAGAAGCAAGACACTTGTATATTACTCGACCACACATTCAGAGTACATCACAAGTTGAACAATATATGGAGGAAGAACAAATAGAGGAAGACCAAACAGAGGAAGTTAACGAGGAAAATGCCACTTATCCAGAGACAAATACAACCAATGTTGACGACCCGATGTGTACAAATGAATTAGAGAGTCCTCCCACAGACGATGATGACGAGATTCCTCCCGTTGAGGACTTTGAGTCACTCCATGGTGTAGATGTAGTTCCTTCATTTTACACTACGTTGAATATGGATGGTGGGGCAAATCATCGTGTCAAGCTACACAAGAATACGTGTGGTTGCAACAAGTGGCAACAACTTGAGATTCCTTGCTCTCATGCAATTGCTGCATGTAAAGAGTTGCACATAGATTATTTGACTCTTATACAAGACTATTACAAAATCAACAGTACATTCTTGATTCTACTCTTATATTATATTTACAATATAATTTCTAAAATAATTGATTTATAG

Coding sequence (CDS)

ATGGACGTTATTGGATTTATTGTGTACATGAATGGAAACATTGTCAATGGACCAAACGGTATCGAGTACGATGTTCCACCTTGTACACAAATTAATGCTTCTAGGGACATGGACTTCCACTCATTCGTCAGTGGATTATGTCAAGTGCTTTCATTAGAAAGAAGTGAAGAAATTGAGATTGTTTTTAAGTACGTGACTATTGGGATACCTTTACAAAATGTTAATGAATTCAATTTCATGAAAACCATTGCTACTTCAGAAGCAAGACACTTGTATATTACTCGACCACACATTCAGAGTACATCACAAGTTGAACAATATATGGAGGAAGAACAAATAGAGGAAGACCAAACAGAGGAAGTTAACGAGGAAAATGCCACTTATCCAGAGACAAATACAACCAATGTTGACGACCCGATGTGTACAAATGAATTAGAGAGTCCTCCCACAGACGATGATGACGAGATTCCTCCCGTTGAGGACTTTGAGTCACTCCATGGTGTAGATGTAGTTCCTTCATTTTACACTACGTTGAATATGGATGGTGGGGCAAATCATCGTGTCAAGCTACACAAGAATACGTGTGGTTGCAACAAGTGGCAACAACTTGAGATTCCTTGCTCTCATGCAATTGCTGCATGTAAAGAGTTGCACATAGATTATTTGACTCTTATACAAGACTATTACAAAATCAACAGTACATTCTTGATTCTACTCTTATATTATATTTACAATATAATTTCTAAAATAATTGATTTATAG

Protein sequence

MDVIGFIVYMNGNIVNGPNGIEYDVPPCTQINASRDMDFHSFVSGLCQVLSLERSEEIEIVFKYVTIGIPLQNVNEFNFMKTIATSEARHLYITRPHIQSTSQVEQYMEEEQIEEDQTEEVNEENATYPETNTTNVDDPMCTNELESPPTDDDDEIPPVEDFESLHGVDVVPSFYTTLNMDGGANHRVKLHKNTCGCNKWQQLEIPCSHAIAACKELHIDYLTLIQDYYKINSTFLILLLYYIYNIISKIIDL

Homology

[Close]

BLAST of Sed0020543 vs. NCBI nr
Match: XP_038877923.1 (uncharacterized protein LOC120070133 [Benincasa hispida])

HSP 1 Score: 79.7 bits (195), Expect = 3.9e-11
Identity = 56/191 (29.32%), Postives = 96/191 (50.26%), Query Frame = 0


Query: 1   MDVIGFIVYMNGNIVNGPNGIEYDVPPCTQINASRDMDFHSFVSGLCQVLSLERSEEIEI 60
           MDV+ F+ YM+GNIVNGP+GIEYD  P  +IN  R  DF++ + G     S+ R + +E+
Sbjct: 1   MDVVEFLCYMHGNIVNGPSGIEYDRQPSLRINMHRQDDFNTLIDGFYDAYSINRDDVVEV 60

Query: 61  VFKYVT--------IGIPLQNVNEFNFMKTIATSEAR--HLYITRPHIQSTSQVEQYMEE 120
           +F+Y +        I I L++  +  FM + A        LYI++P + S +   + +E 
Sbjct: 61  IFRYGSYVARSTFHIPISLRSDIDVQFMMSNAPYPPNRVELYISQPSVPSPTSTREEVET 120

Query: 121 EQIEEDQTEEVNEENATYPETNTTNVDDPMCTNELESPPTDDDDEIPPVEDFESLHGVDV 180
            ++E    E+              + D  + TN+ E    DDD ++  +      +GV  
Sbjct: 121 VELESHVVED-------------EHYDPTIATNDEEVKMDDDDIDLDQLS--SQFYGVHE 176

Query: 181 VPSFYTTLNMD 182
           VP  +T ++++
Sbjct: 181 VPETFTEIDLN 176

[Close]

BLAST of Sed0020543 vs. NCBI nr
Match: XP_030964083.1 (uncharacterized protein LOC115985259 [Quercus lobata])

HSP 1 Score: 65.1 bits (157), Expect = 1.0e-06
Identity = 32/79 (40.51%), Postives = 43/79 (54.43%), Query Frame = 0


Query: 159 VEDFESLHGVDVVPSFYTTLNMDGG-ANHRVKLHKNTCGCNKWQQLEIPCSHAIAACKEL 218
           V +F    GV  V + Y      GG  NH V++   TCGC KWQ L+IPCSHAI   + L
Sbjct: 613 VRNFNHAEGVYQVVTPYNDYRGGGGNHNHEVRIFARTCGCRKWQNLKIPCSHAIKVLQGL 672

Query: 219 HIDYLTLIQDYYKINSTFL 237
           H++  + I   Y +N+  L
Sbjct: 673 HLNVTSYIDPCYSLNNAIL 691

[Close]

BLAST of Sed0020543 vs. NCBI nr
Match: XP_030957733.1 (uncharacterized protein LOC115979817 [Quercus lobata])

HSP 1 Score: 64.3 bits (155), Expect = 1.7e-06
Identity = 33/77 (42.86%), Postives = 45/77 (58.44%), Query Frame = 0


Query: 159 VEDFESLHGVDVVPSFYTTLNMDGGANHRVKLH--KNTCGCNKWQQLEIPCSHAIAACKE 218
           V +F +  GV  V + Y   +  GG NH  ++H  + TCGC KWQ L+IPCSHAI   K 
Sbjct: 16  VRNFNNEIGVYQVVTPYND-HRGGGGNHSHEVHVIEQTCGCGKWQNLKIPCSHAIKVLKS 75

Query: 219 LHIDYLTLIQDYYKINS 234
           LH+D  + I   Y +N+
Sbjct: 76  LHLDATSYIDPCYSLNN 91

[Close]

BLAST of Sed0020543 vs. NCBI nr
Match: XP_021636306.1 (uncharacterized protein LOC110632398 [Hevea brasiliensis])

HSP 1 Score: 63.9 bits (154), Expect = 2.2e-06
Identity = 26/52 (50.00%), Postives = 36/52 (69.23%), Query Frame = 0


Query: 183 GANHRVKLHKNTCGCNKWQQLEIPCSHAIAACKELHIDYLTLIQDYYKINST 235
           G NH VKL++ TC C K+Q++ IPCSH IAAC+ L I+Y   + +YY +  T
Sbjct: 621 GDNHIVKLYERTCTCEKFQEIRIPCSHVIAACQSLSINYEQYVSNYYTLERT 672

[Close]

BLAST of Sed0020543 vs. NCBI nr
Match: XP_021688238.1 (uncharacterized protein LOC110670480 [Hevea brasiliensis])

HSP 1 Score: 63.2 bits (152), Expect = 3.8e-06
Identity = 25/52 (48.08%), Postives = 36/52 (69.23%), Query Frame = 0


Query: 183 GANHRVKLHKNTCGCNKWQQLEIPCSHAIAACKELHIDYLTLIQDYYKINST 235
           G NH VKL++ TC C K+Q++ IPCSH IAAC+ + I+Y   + +YY +  T
Sbjct: 337 GDNHIVKLYERTCTCEKFQEIRIPCSHVIAACQSMSINYEQYVSNYYTLERT 388

[Close]

BLAST of Sed0020543 vs. ExPASy TrEMBL
Match: A5BXI2 (SWIM-type domain-containing protein OS=Vitis vinifera OX=29760 GN=VITISV_003261 PE=4 SV=1)

HSP 1 Score: 61.6 bits (148), Expect = 5.4e-06
Identity = 28/73 (38.36%), Postives = 42/73 (57.53%), Query Frame = 0


Query: 162 FESLHGVDVVPSFYTTLNMDGGANHR-VKLHKNTCGCNKWQQLEIPCSHAIAACKELHID 221
           F  +H    V +     +MD G N + VKL++ TC CNKWQ   IPCSH +A    + ID
Sbjct: 636 FHRIHETFEVITALHRFHMDKGRNKQVVKLNEGTCSCNKWQSFGIPCSHVLAVSAHMRID 695

Query: 222 YLTLIQDYYKINS 234
              L++ YY++++
Sbjct: 696 SWQLVEKYYRLDA 708

[Close]

BLAST of Sed0020543 vs. ExPASy TrEMBL
Match: A0A438FPA0 (Serine/threonine-protein phosphatase 7 long form-like OS=Vitis vinifera OX=29760 GN=MAIL3_164 PE=4 SV=1)

HSP 1 Score: 61.2 bits (147), Expect = 7.0e-06
Identity = 28/73 (38.36%), Postives = 42/73 (57.53%), Query Frame = 0


Query: 162 FESLHGVDVVPSFYTTLNMDGGANHR-VKLHKNTCGCNKWQQLEIPCSHAIAACKELHID 221
           F  +H    V +     +MD G N + VKL++ TC CNKWQ   IPCSH +A    + ID
Sbjct: 465 FHRIHETFEVITALHGFHMDKGRNKQVVKLNEGTCSCNKWQSFGIPCSHVLAVSAHMRID 524

Query: 222 YLTLIQDYYKINS 234
              L++ YY++++
Sbjct: 525 SWQLVEKYYRLDA 537

[Close]

BLAST of Sed0020543 vs. ExPASy TrEMBL
Match: A0A438K0P0 (Serine/threonine-protein phosphatase 7 long form-like OS=Vitis vinifera OX=29760 GN=MAIL3_90 PE=4 SV=1)

HSP 1 Score: 61.2 bits (147), Expect = 7.0e-06
Identity = 28/73 (38.36%), Postives = 42/73 (57.53%), Query Frame = 0


Query: 162 FESLHGVDVVPSFYTTLNMDGGANHR-VKLHKNTCGCNKWQQLEIPCSHAIAACKELHID 221
           F  +H    V +     +MD G N + VKL++ TC CNKWQ   IPCSH +A    + ID
Sbjct: 464 FHRIHETFEVITALHGFHMDKGRNKQVVKLNEGTCSCNKWQSFGIPCSHVLAVSAHMRID 523

Query: 222 YLTLIQDYYKINS 234
              L++ YY++++
Sbjct: 524 SWQLVEKYYRLDA 536

[Close]

BLAST of Sed0020543 vs. ExPASy TrEMBL
Match: A5BJW1 (SWIM-type domain-containing protein OS=Vitis vinifera OX=29760 GN=VITISV_008825 PE=4 SV=1)

HSP 1 Score: 61.2 bits (147), Expect = 7.0e-06
Identity = 28/73 (38.36%), Postives = 42/73 (57.53%), Query Frame = 0


Query: 162 FESLHGVDVVPSFYTTLNMDGGANHR-VKLHKNTCGCNKWQQLEIPCSHAIAACKELHID 221
           F  +H    V +     +MD G N + VKL++ TC CNKWQ   IPCSH +A    + ID
Sbjct: 540 FHRIHETFEVITALHGFHMDKGRNKQVVKLNEGTCSCNKWQSFGIPCSHVLAVSAHMRID 599

Query: 222 YLTLIQDYYKINS 234
              L++ YY++++
Sbjct: 600 SWQLVEKYYRLDA 612

[Close]

BLAST of Sed0020543 vs. ExPASy TrEMBL
Match: A0A438IQG1 (Serine/threonine-protein phosphatase 7 long form-like OS=Vitis vinifera OX=29760 GN=MAIL3_59 PE=4 SV=1)

HSP 1 Score: 61.2 bits (147), Expect = 7.0e-06
Identity = 28/73 (38.36%), Postives = 42/73 (57.53%), Query Frame = 0


Query: 162 FESLHGVDVVPSFYTTLNMDGGANHR-VKLHKNTCGCNKWQQLEIPCSHAIAACKELHID 221
           F  +H    V +     +MD G N + VKL++ TC CNKWQ   IPCSH +A    + ID
Sbjct: 434 FHRIHETFEVITALHGFHMDKGRNKQVVKLNEGTCSCNKWQSFGIPCSHVLAVSAHMRID 493

Query: 222 YLTLIQDYYKINS 234
              L++ YY++++
Sbjct: 494 SWQLVEKYYRLDA 506

[Close]

BLAST of Sed0020543 vs. TAIR 10
Match: AT1G49920.1 (MuDR family transposase )

HSP 1 Score: 43.5 bits (101), Expect = 2.9e-04
Identity = 28/91 (30.77%), Postives = 45/91 (49.45%), Query Frame = 0


Query: 144 ELESPPTDDDDEIPPVEDFE-SLHGVDVVPSFYTTL--NMDGGANHRVKLHKNTCGCNKW 203
           +LE   TD D  +  +   E   + V + P   T L    +   +  V+L+  TC C ++
Sbjct: 605 KLEEFETDSDTWVITITPLERDAYQVSMAPKKKTRLMGQSNDSTSGIVQLNDTTCTCGEF 664

Query: 204 QQLEIPCSHAIAACKELHIDYLTLIQDYYKI 232
           Q+ + PC HA+A C EL I+ L  + D Y +
Sbjct: 665 QKNKFPCLHALAVCDELKINPLQYVDDCYTV 695

The following BLAST results are available for this feature:

BLAST of Sed0020543 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038877923.1	3.9e-11	29.32	uncharacterized protein LOC120070133 [Benincasa hispida]	[more]
XP_030964083.1	1.0e-06	40.51	uncharacterized protein LOC115985259 [Quercus lobata]	[more]
XP_030957733.1	1.7e-06	42.86	uncharacterized protein LOC115979817 [Quercus lobata]	[more]
XP_021636306.1	2.2e-06	50.00	uncharacterized protein LOC110632398 [Hevea brasiliensis]	[more]
XP_021688238.1	3.8e-06	48.08	uncharacterized protein LOC110670480 [Hevea brasiliensis]	[more]

BLAST of Sed0020543 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Sed0020543 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A5BXI2	5.4e-06	38.36	SWIM-type domain-containing protein OS=Vitis vinifera OX=29760 GN=VITISV_003261 ...	[more]
A0A438FPA0	7.0e-06	38.36	Serine/threonine-protein phosphatase 7 long form-like OS=Vitis vinifera OX=29760...	[more]
A0A438K0P0	7.0e-06	38.36	Serine/threonine-protein phosphatase 7 long form-like OS=Vitis vinifera OX=29760...	[more]
A5BJW1	7.0e-06	38.36	SWIM-type domain-containing protein OS=Vitis vinifera OX=29760 GN=VITISV_008825 ...	[more]
A0A438IQG1	7.0e-06	38.36	Serine/threonine-protein phosphatase 7 long form-like OS=Vitis vinifera OX=29760...	[more]

BLAST of Sed0020543 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G49920.1	2.9e-04	30.77	MuDR family transposase	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 104..124
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 115..157
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 124..141
IPR006564	Zinc finger, PMZ-type	SMART	SM00575	26again6	coord: 193..220 e-value: 5.9E-7 score: 39.1
IPR007527	Zinc finger, SWIM-type	PFAM	PF04434	SWIM	coord: 188..216 e-value: 9.6E-7 score: 28.4
IPR007527	Zinc finger, SWIM-type	PROSITE	PS50966	ZF_SWIM	coord: 186..218 score: 9.049959

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0020543.1	Sed0020543.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0008270	zinc ion binding