Sed0020534 (gene) Chayote v1

Overview
NameSed0020534
Typegene
OrganismSechium edule (Chayote v1)
Descriptioncryptdin protein-related
LocationLG07: 10464481 .. 10466072 (+)
RNA-Seq ExpressionSed0020534
SyntenySed0020534
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
CCAAATCAACCATAATTTCTCTTCAGATTCTGGCAATGGCTGCAGCTAAATTCTCTCCGAGCTCGGTTCTAGTGACGGTTCTCGTGTTCACCATGGTTCTCTCTCCCTTGATGATCTCCACTGCAAACGCTAATCGTGCGCTCCTCCAAGGTTAGAGTTCGTTAAATCATTATTAAACCCAAAAATATTATAGTTATGACGTAGAGTTTACGCTCACTTTGATTATTATTGAAAATGAATTTTTCTGTATTGATCCTTTAAATGTATATGGATTAGTTTACGTTCACCTCTACTATTTTTACGAGACATTACTTGAACTCTAAATAAATTAAGTTGCCAAGAAAATATGTAAGTAATTATTATGGATTTATAATATCTTGGAGGCATTTTGGACCCTTGTTTAAGAGTGTGTTAGGTTGGGTCAACCAATGTTTGAACCATCAATAGTAATAACCAATAATTTAGCTCATAACCTCTTATTTCAAAAATAATAACCATTTAGCCTTATTATAATAATATATGTTATGCTAAAACTTATCATCTCATTATCAATATAACTTTTATTATAATAACTCATCATTTATAATAAGTCAACCGTTTCTTCAACTCAATCTTAGTTTTCATGACCAATCTATGATAGTTATGAGTAATTATTGATTTTTTCTATTATTAGATAATGGTCATAAGAGGAGTTATATAGTCCCAAGATGTTATGTGATAAATCTAGGGTCGTTATTTTCTTATAAAAGTTGTAAAGCATTCCATTTTTTCGATAGGTAAGATTTGGACACGTCCCTTTTAGATTTATCAGTTTTAAATCATTTCTAAATTTTATTTTTATTGAATCAAATATGTGTTTGAGTTAAGTAAATTTTGATATTATATTAAATACTATAAGGTTTCATTTTTAAACCTTTAATAGAATACACGGTCTTAAAAAGTAGGTTTGACTGTGTTTTTTTTTCAACAAATTTGTGATTGTTTTTAGATTAAATAGATTAGGCTTATTAATTGAGGTAAATAGCTACCAACAAAGTAGTAGTTCAACTTTCCATTAGTGTAATAATTATGAGGCAATGGTTGGAATTTCCTACCTCCAATTATTATAATTTAAAAAGGAAAATTAATAATTGATTCAAAAAGCCAACGATAATATATTACTAGTTTATGTTAGAAAACATAAATTAGAAATATATTATCGTTGGCTATAACAATATTGTATTTATATTTGACTTTTGATTTTTTTTAAAAAAATATTTAAACTGTTGAGTTTGGTGACACAGTTACTAATAGGCCGCCGATATGCCCGGCGTGCGTGTGCTGCGAGCCGGCGCCGGCGGGATCCTGCTGCCGGTGTTGCGCTACTCCGATTCAGACTTCATCTCAGAATGGTTCACCATGAAAACCTTCTCCTGCATGCTAAGTTTAATGGTTTGAAGATGCTTTCAGAATAAGGAGGAACCTCTATCTCCATGTTAAACAATAATAAGTTTTATTTTAATTTGATCAATGTTTGGTTAATGTTGTTATGATGTTGATTAAGCCAGTTTGATATTCGAGTGAAGAATAAAAGATACAAAATATAGTTTGAG

mRNA sequence

CCAAATCAACCATAATTTCTCTTCAGATTCTGGCAATGGCTGCAGCTAAATTCTCTCCGAGCTCGGTTCTAGTGACGGTTCTCGTGTTCACCATGGTTCTCTCTCCCTTGATGATCTCCACTGCAAACGCTAATCGTGCGCTCCTCCAAGTTACTAATAGGCCGCCGATATGCCCGGCGTGCGTGTGCTGCGAGCCGGCGCCGGCGGGATCCTGCTGCCGGTGTTGCGCTACTCCGATTCAGACTTCATCTCAGAATGGTTCACCATGAAAACCTTCTCCTGCATGCTAAGTTTAATGGTTTGAAGATGCTTTCAGAATAAGGAGGAACCTCTATCTCCATGTTAAACAATAATAAGTTTTATTTTAATTTGATCAATGTTTGGTTAATGTTGTTATGATGTTGATTAAGCCAGTTTGATATTCGAGTGAAGAATAAAAGATACAAAATATAGTTTGAG

Coding sequence (CDS)

ATGGCTGCAGCTAAATTCTCTCCGAGCTCGGTTCTAGTGACGGTTCTCGTGTTCACCATGGTTCTCTCTCCCTTGATGATCTCCACTGCAAACGCTAATCGTGCGCTCCTCCAAGTTACTAATAGGCCGCCGATATGCCCGGCGTGCGTGTGCTGCGAGCCGGCGCCGGCGGGATCCTGCTGCCGGTGTTGCGCTACTCCGATTCAGACTTCATCTCAGAATGGTTCACCATGA

Protein sequence

MAAAKFSPSSVLVTVLVFTMVLSPLMISTANANRALLQVTNRPPICPACVCCEPAPAGSCCRCCATPIQTSSQNGSP
Homology
BLAST of Sed0020534 vs. NCBI nr
Match: XP_038896231.1 (uncharacterized protein LOC120084509 [Benincasa hispida])

HSP 1 Score: 127.1 bits (318), Expect = 6.6e-26
Identity = 65/77 (84.42%), Postives = 70/77 (90.91%), Query Frame = 0

Query: 1  MAAAKFSPSSVLVTVLVFTMVLSPLMISTANANRALLQVTNRPPICPACVCCEPAPAGSC 60
          MA+AKFS +SVL+TVLVFTMVLSP+ I TANA R LLQ  NRPPICPACVCCEPAPAGSC
Sbjct: 1  MASAKFSLTSVLMTVLVFTMVLSPMTIPTANATRVLLQQINRPPICPACVCCEPAPAGSC 60

Query: 61 CRCCATPIQTSSQNGSP 78
          CRCCA+PIQTSSQNGSP
Sbjct: 61 CRCCASPIQTSSQNGSP 77

BLAST of Sed0020534 vs. NCBI nr
Match: XP_022992462.1 (uncharacterized protein LOC111488758 [Cucurbita maxima])

HSP 1 Score: 125.9 bits (315), Expect = 1.5e-25
Identity = 63/72 (87.50%), Postives = 65/72 (90.28%), Query Frame = 0

Query: 6  FSPSSVLVTVLVFTMVLSPLMISTANANRALLQVTNRPPICPACVCCEPAPAGSCCRCCA 65
          FSP S+ VTVLVF MVLSP+ ISTANA RALLQ  NRPPICPACVCCEPAPAGSCCRCCA
Sbjct: 7  FSPISIFVTVLVFAMVLSPMTISTANATRALLQQVNRPPICPACVCCEPAPAGSCCRCCA 66

Query: 66 TPIQTSSQNGSP 78
          TPIQTSSQNGSP
Sbjct: 67 TPIQTSSQNGSP 78

BLAST of Sed0020534 vs. NCBI nr
Match: KAG6575497.1 (hypothetical protein SDJN03_26136, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 123.2 bits (308), Expect = 9.5e-25
Identity = 61/73 (83.56%), Postives = 65/73 (89.04%), Query Frame = 0

Query: 5  KFSPSSVLVTVLVFTMVLSPLMISTANANRALLQVTNRPPICPACVCCEPAPAGSCCRCC 64
          KF+P+S+ VTVLVF MVLSP  ISTANA R LLQ  NRPPICPACVCCEPAPAGSCCRCC
Sbjct: 6  KFTPTSIFVTVLVFAMVLSPTTISTANATRVLLQQVNRPPICPACVCCEPAPAGSCCRCC 65

Query: 65 ATPIQTSSQNGSP 78
          ATPIQTSSQ+GSP
Sbjct: 66 ATPIQTSSQSGSP 78

BLAST of Sed0020534 vs. NCBI nr
Match: XP_022954010.1 (uncharacterized protein LOC111456398 [Cucurbita moschata])

HSP 1 Score: 121.7 bits (304), Expect = 2.8e-24
Identity = 60/73 (82.19%), Postives = 64/73 (87.67%), Query Frame = 0

Query: 5  KFSPSSVLVTVLVFTMVLSPLMISTANANRALLQVTNRPPICPACVCCEPAPAGSCCRCC 64
          KF+P+S+ VTVLVF MVLSP  IST NA R LLQ  NRPPICPACVCCEPAPAGSCCRCC
Sbjct: 6  KFTPTSIFVTVLVFAMVLSPTTISTVNATRVLLQQVNRPPICPACVCCEPAPAGSCCRCC 65

Query: 65 ATPIQTSSQNGSP 78
          ATPIQTSSQ+GSP
Sbjct: 66 ATPIQTSSQSGSP 78

BLAST of Sed0020534 vs. NCBI nr
Match: KAA0059464.1 (hypothetical protein E6C27_scaffold242G001940 [Cucumis melo var. makuwa] >TYK03859.1 hypothetical protein E5676_scaffold347G00530 [Cucumis melo var. makuwa])

HSP 1 Score: 112.5 bits (280), Expect = 1.7e-21
Identity = 58/77 (75.32%), Postives = 63/77 (81.82%), Query Frame = 0

Query: 1  MAAAKFSPSSVLVTVLVFTMVLSPLMISTANANRALLQVTNRPPICPACVCCEPAPAGSC 60
          MA  K   +SV +TVLVF M+LSP+ I TA A R LLQ  NRPPICPACVCCEPAPAGSC
Sbjct: 1  MAIPKSPITSVFMTVLVFAMLLSPMTIPTATATRVLLQQLNRPPICPACVCCEPAPAGSC 60

Query: 61 CRCCATPIQTSSQNGSP 78
          CRCCA+PIQTSSQNGSP
Sbjct: 61 CRCCASPIQTSSQNGSP 77

BLAST of Sed0020534 vs. ExPASy TrEMBL
Match: A0A6J1JPW7 (uncharacterized protein LOC111488758 OS=Cucurbita maxima OX=3661 GN=LOC111488758 PE=4 SV=1)

HSP 1 Score: 125.9 bits (315), Expect = 7.1e-26
Identity = 63/72 (87.50%), Postives = 65/72 (90.28%), Query Frame = 0

Query: 6  FSPSSVLVTVLVFTMVLSPLMISTANANRALLQVTNRPPICPACVCCEPAPAGSCCRCCA 65
          FSP S+ VTVLVF MVLSP+ ISTANA RALLQ  NRPPICPACVCCEPAPAGSCCRCCA
Sbjct: 7  FSPISIFVTVLVFAMVLSPMTISTANATRALLQQVNRPPICPACVCCEPAPAGSCCRCCA 66

Query: 66 TPIQTSSQNGSP 78
          TPIQTSSQNGSP
Sbjct: 67 TPIQTSSQNGSP 78

BLAST of Sed0020534 vs. ExPASy TrEMBL
Match: A0A6J1GR88 (uncharacterized protein LOC111456398 OS=Cucurbita moschata OX=3662 GN=LOC111456398 PE=4 SV=1)

HSP 1 Score: 121.7 bits (304), Expect = 1.3e-24
Identity = 60/73 (82.19%), Postives = 64/73 (87.67%), Query Frame = 0

Query: 5  KFSPSSVLVTVLVFTMVLSPLMISTANANRALLQVTNRPPICPACVCCEPAPAGSCCRCC 64
          KF+P+S+ VTVLVF MVLSP  IST NA R LLQ  NRPPICPACVCCEPAPAGSCCRCC
Sbjct: 6  KFTPTSIFVTVLVFAMVLSPTTISTVNATRVLLQQVNRPPICPACVCCEPAPAGSCCRCC 65

Query: 65 ATPIQTSSQNGSP 78
          ATPIQTSSQ+GSP
Sbjct: 66 ATPIQTSSQSGSP 78

BLAST of Sed0020534 vs. ExPASy TrEMBL
Match: A0A5A7UWJ7 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold347G00530 PE=4 SV=1)

HSP 1 Score: 112.5 bits (280), Expect = 8.1e-22
Identity = 58/77 (75.32%), Postives = 63/77 (81.82%), Query Frame = 0

Query: 1  MAAAKFSPSSVLVTVLVFTMVLSPLMISTANANRALLQVTNRPPICPACVCCEPAPAGSC 60
          MA  K   +SV +TVLVF M+LSP+ I TA A R LLQ  NRPPICPACVCCEPAPAGSC
Sbjct: 1  MAIPKSPITSVFMTVLVFAMLLSPMTIPTATATRVLLQQLNRPPICPACVCCEPAPAGSC 60

Query: 61 CRCCATPIQTSSQNGSP 78
          CRCCA+PIQTSSQNGSP
Sbjct: 61 CRCCASPIQTSSQNGSP 77

BLAST of Sed0020534 vs. ExPASy TrEMBL
Match: A0A0A0K7Y9 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G452230 PE=4 SV=1)

HSP 1 Score: 111.7 bits (278), Expect = 1.4e-21
Identity = 57/77 (74.03%), Postives = 62/77 (80.52%), Query Frame = 0

Query: 1  MAAAKFSPSSVLVTVLVFTMVLSPLMISTANANRALLQVTNRPPICPACVCCEPAPAGSC 60
          MA  K   +SV +TVLVF MVLSP+   TA+A R LLQ  NRPPICPACVCCEP PAGSC
Sbjct: 1  MAIPKLPLTSVFITVLVFAMVLSPMTTPTASATRVLLQQINRPPICPACVCCEPPPAGSC 60

Query: 61 CRCCATPIQTSSQNGSP 78
          CRCCA+PIQTSSQNGSP
Sbjct: 61 CRCCASPIQTSSQNGSP 77

BLAST of Sed0020534 vs. ExPASy TrEMBL
Match: A0A6J1CSH3 (uncharacterized protein LOC111013890 OS=Momordica charantia OX=3673 GN=LOC111013890 PE=4 SV=1)

HSP 1 Score: 104.8 bits (260), Expect = 1.7e-19
Identity = 61/78 (78.21%), Postives = 65/78 (83.33%), Query Frame = 0

Query: 1  MAAAKFSPSSVLVTVLVFTMVLSPLMISTANANRALLQVTNRPPICPACVCCEPAPAGSC 60
          MAA KFS SS+ VTVLVFTMVLSP MISTA A R  LQV  RPPICPACVCC+P P GSC
Sbjct: 5  MAAPKFSLSSIFVTVLVFTMVLSP-MISTAAATRLPLQV-RRPPICPACVCCKPPPPGSC 64

Query: 61 CR-CCATPIQTSSQNGSP 78
          C+ CCATPI+TSSQNGSP
Sbjct: 65 CKQCCATPIETSSQNGSP 80

BLAST of Sed0020534 vs. TAIR 10
Match: AT1G51920.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: stem, stamen; EXPRESSED DURING: 4 anthesis; Has 22 Blast hits to 22 proteins in 5 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 22; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 62.4 bits (150), Expect = 1.8e-10
Identity = 37/77 (48.05%), Postives = 50/77 (64.94%), Query Frame = 0

Query: 1  MAAAKFSPSSVLVTVLVFTMVLSPLMISTANANR-ALLQVTNRPPICPACVCCEPAPAGS 60
          MA+     S  L   ++F +++ PL  S +NA R     +++R PICPACVCCEPAP GS
Sbjct: 1  MASFHSGKSIFLKLFVLFLLLVLPL--SQSNATRIPRAPISSRRPICPACVCCEPAPLGS 60

Query: 61 CCRCCATPIQTSSQNGS 77
          CCRCCA+PI T + + S
Sbjct: 61 CCRCCASPIVTQTHHHS 75

BLAST of Sed0020534 vs. TAIR 10
Match: AT1G51915.1 (cryptdin protein-related )

HSP 1 Score: 48.1 bits (113), Expect = 3.6e-06
Identity = 30/65 (46.15%), Postives = 41/65 (63.08%), Query Frame = 0

Query: 1  MAAAKFSPSSVLVTVLVFTMVLSPLMISTANANRALLQVTNR--PPICPACVCCEPAPAG 60
          MA  +F  S++L++VLV  +VLSP++     A RA L    R    +CP+CVCC PAP G
Sbjct: 1  MATERF--STMLISVLVLALVLSPIL--PCQATRAHLDAETRMLRRVCPSCVCCAPAPRG 60

Query: 61 SCCRC 64
          +CC C
Sbjct: 61 ACCPC 61

BLAST of Sed0020534 vs. TAIR 10
Match: AT3G21352.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G21351.1); Has 26 Blast hits to 26 proteins in 5 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 26; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 40.0 bits (92), Expect = 9.8e-04
Identity = 23/61 (37.70%), Postives = 34/61 (55.74%), Query Frame = 0

Query: 9  SSVLVTVLVFTMVLSPLM------ISTANANRALLQVTNRPPICPACVCCEPAPAGSCCR 64
          S++L+ V V ++VLSP++      +      R L+  +    +CP CVCC PAP  SCC 
Sbjct: 8  SNILLYVFVLSLVLSPILPCQAASVLLGGGGRKLMAPSPPIRMCPQCVCCAPAPPDSCCP 67

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_038896231.16.6e-2684.42uncharacterized protein LOC120084509 [Benincasa hispida][more]
XP_022992462.11.5e-2587.50uncharacterized protein LOC111488758 [Cucurbita maxima][more]
KAG6575497.19.5e-2583.56hypothetical protein SDJN03_26136, partial [Cucurbita argyrosperma subsp. sorori... [more]
XP_022954010.12.8e-2482.19uncharacterized protein LOC111456398 [Cucurbita moschata][more]
KAA0059464.11.7e-2175.32hypothetical protein E6C27_scaffold242G001940 [Cucumis melo var. makuwa] >TYK038... [more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A6J1JPW77.1e-2687.50uncharacterized protein LOC111488758 OS=Cucurbita maxima OX=3661 GN=LOC111488758... [more]
A0A6J1GR881.3e-2482.19uncharacterized protein LOC111456398 OS=Cucurbita moschata OX=3662 GN=LOC1114563... [more]
A0A5A7UWJ78.1e-2275.32Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A0A0K7Y91.4e-2174.03Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G452230 PE=4 SV=1[more]
A0A6J1CSH31.7e-1978.21uncharacterized protein LOC111013890 OS=Momordica charantia OX=3673 GN=LOC111013... [more]
Match NameE-valueIdentityDescription
AT1G51920.11.8e-1048.05unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic... [more]
AT1G51915.13.6e-0646.15cryptdin protein-related [more]
AT3G21352.19.8e-0437.70unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic... [more]
InterPro
Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR36328TRANSMEMBRANE PROTEINcoord: 4..77
NoneNo IPR availablePANTHERPTHR36328:SF1TRANSMEMBRANE PROTEINcoord: 4..77

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Sed0020534.1Sed0020534.1mRNA