Sed0020534 (gene) Chayote v1
Overview
Sequences
The following sequences are available for this feature:
Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.CCAAATCAACCATAATTTCTCTTCAGATTCTGGCAATGGCTGCAGCTAAATTCTCTCCGAGCTCGGTTCTAGTGACGGTTCTCGTGTTCACCATGGTTCTCTCTCCCTTGATGATCTCCACTGCAAACGCTAATCGTGCGCTCCTCCAAGGTTAGAGTTCGTTAAATCATTATTAAACCCAAAAATATTATAGTTATGACGTAGAGTTTACGCTCACTTTGATTATTATTGAAAATGAATTTTTCTGTATTGATCCTTTAAATGTATATGGATTAGTTTACGTTCACCTCTACTATTTTTACGAGACATTACTTGAACTCTAAATAAATTAAGTTGCCAAGAAAATATGTAAGTAATTATTATGGATTTATAATATCTTGGAGGCATTTTGGACCCTTGTTTAAGAGTGTGTTAGGTTGGGTCAACCAATGTTTGAACCATCAATAGTAATAACCAATAATTTAGCTCATAACCTCTTATTTCAAAAATAATAACCATTTAGCCTTATTATAATAATATATGTTATGCTAAAACTTATCATCTCATTATCAATATAACTTTTATTATAATAACTCATCATTTATAATAAGTCAACCGTTTCTTCAACTCAATCTTAGTTTTCATGACCAATCTATGATAGTTATGAGTAATTATTGATTTTTTCTATTATTAGATAATGGTCATAAGAGGAGTTATATAGTCCCAAGATGTTATGTGATAAATCTAGGGTCGTTATTTTCTTATAAAAGTTGTAAAGCATTCCATTTTTTCGATAGGTAAGATTTGGACACGTCCCTTTTAGATTTATCAGTTTTAAATCATTTCTAAATTTTATTTTTATTGAATCAAATATGTGTTTGAGTTAAGTAAATTTTGATATTATATTAAATACTATAAGGTTTCATTTTTAAACCTTTAATAGAATACACGGTCTTAAAAAGTAGGTTTGACTGTGTTTTTTTTTCAACAAATTTGTGATTGTTTTTAGATTAAATAGATTAGGCTTATTAATTGAGGTAAATAGCTACCAACAAAGTAGTAGTTCAACTTTCCATTAGTGTAATAATTATGAGGCAATGGTTGGAATTTCCTACCTCCAATTATTATAATTTAAAAAGGAAAATTAATAATTGATTCAAAAAGCCAACGATAATATATTACTAGTTTATGTTAGAAAACATAAATTAGAAATATATTATCGTTGGCTATAACAATATTGTATTTATATTTGACTTTTGATTTTTTTTAAAAAAATATTTAAACTGTTGAGTTTGGTGACACAGTTACTAATAGGCCGCCGATATGCCCGGCGTGCGTGTGCTGCGAGCCGGCGCCGGCGGGATCCTGCTGCCGGTGTTGCGCTACTCCGATTCAGACTTCATCTCAGAATGGTTCACCATGAAAACCTTCTCCTGCATGCTAAGTTTAATGGTTTGAAGATGCTTTCAGAATAAGGAGGAACCTCTATCTCCATGTTAAACAATAATAAGTTTTATTTTAATTTGATCAATGTTTGGTTAATGTTGTTATGATGTTGATTAAGCCAGTTTGATATTCGAGTGAAGAATAAAAGATACAAAATATAGTTTGAG CCAAATCAACCATAATTTCTCTTCAGATTCTGGCAATGGCTGCAGCTAAATTCTCTCCGAGCTCGGTTCTAGTGACGGTTCTCGTGTTCACCATGGTTCTCTCTCCCTTGATGATCTCCACTGCAAACGCTAATCGTGCGCTCCTCCAAGTTACTAATAGGCCGCCGATATGCCCGGCGTGCGTGTGCTGCGAGCCGGCGCCGGCGGGATCCTGCTGCCGGTGTTGCGCTACTCCGATTCAGACTTCATCTCAGAATGGTTCACCATGAAAACCTTCTCCTGCATGCTAAGTTTAATGGTTTGAAGATGCTTTCAGAATAAGGAGGAACCTCTATCTCCATGTTAAACAATAATAAGTTTTATTTTAATTTGATCAATGTTTGGTTAATGTTGTTATGATGTTGATTAAGCCAGTTTGATATTCGAGTGAAGAATAAAAGATACAAAATATAGTTTGAG ATGGCTGCAGCTAAATTCTCTCCGAGCTCGGTTCTAGTGACGGTTCTCGTGTTCACCATGGTTCTCTCTCCCTTGATGATCTCCACTGCAAACGCTAATCGTGCGCTCCTCCAAGTTACTAATAGGCCGCCGATATGCCCGGCGTGCGTGTGCTGCGAGCCGGCGCCGGCGGGATCCTGCTGCCGGTGTTGCGCTACTCCGATTCAGACTTCATCTCAGAATGGTTCACCATGA MAAAKFSPSSVLVTVLVFTMVLSPLMISTANANRALLQVTNRPPICPACVCCEPAPAGSCCRCCATPIQTSSQNGSP Homology
BLAST of Sed0020534 vs. NCBI nr
Match: XP_038896231.1 (uncharacterized protein LOC120084509 [Benincasa hispida]) HSP 1 Score: 127.1 bits (318), Expect = 6.6e-26 Identity = 65/77 (84.42%), Postives = 70/77 (90.91%), Query Frame = 0
BLAST of Sed0020534 vs. NCBI nr
Match: XP_022992462.1 (uncharacterized protein LOC111488758 [Cucurbita maxima]) HSP 1 Score: 125.9 bits (315), Expect = 1.5e-25 Identity = 63/72 (87.50%), Postives = 65/72 (90.28%), Query Frame = 0
BLAST of Sed0020534 vs. NCBI nr
Match: KAG6575497.1 (hypothetical protein SDJN03_26136, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 123.2 bits (308), Expect = 9.5e-25 Identity = 61/73 (83.56%), Postives = 65/73 (89.04%), Query Frame = 0
BLAST of Sed0020534 vs. NCBI nr
Match: XP_022954010.1 (uncharacterized protein LOC111456398 [Cucurbita moschata]) HSP 1 Score: 121.7 bits (304), Expect = 2.8e-24 Identity = 60/73 (82.19%), Postives = 64/73 (87.67%), Query Frame = 0
BLAST of Sed0020534 vs. NCBI nr
Match: KAA0059464.1 (hypothetical protein E6C27_scaffold242G001940 [Cucumis melo var. makuwa] >TYK03859.1 hypothetical protein E5676_scaffold347G00530 [Cucumis melo var. makuwa]) HSP 1 Score: 112.5 bits (280), Expect = 1.7e-21 Identity = 58/77 (75.32%), Postives = 63/77 (81.82%), Query Frame = 0
BLAST of Sed0020534 vs. ExPASy TrEMBL
Match: A0A6J1JPW7 (uncharacterized protein LOC111488758 OS=Cucurbita maxima OX=3661 GN=LOC111488758 PE=4 SV=1) HSP 1 Score: 125.9 bits (315), Expect = 7.1e-26 Identity = 63/72 (87.50%), Postives = 65/72 (90.28%), Query Frame = 0
BLAST of Sed0020534 vs. ExPASy TrEMBL
Match: A0A6J1GR88 (uncharacterized protein LOC111456398 OS=Cucurbita moschata OX=3662 GN=LOC111456398 PE=4 SV=1) HSP 1 Score: 121.7 bits (304), Expect = 1.3e-24 Identity = 60/73 (82.19%), Postives = 64/73 (87.67%), Query Frame = 0
BLAST of Sed0020534 vs. ExPASy TrEMBL
Match: A0A5A7UWJ7 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold347G00530 PE=4 SV=1) HSP 1 Score: 112.5 bits (280), Expect = 8.1e-22 Identity = 58/77 (75.32%), Postives = 63/77 (81.82%), Query Frame = 0
BLAST of Sed0020534 vs. ExPASy TrEMBL
Match: A0A0A0K7Y9 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G452230 PE=4 SV=1) HSP 1 Score: 111.7 bits (278), Expect = 1.4e-21 Identity = 57/77 (74.03%), Postives = 62/77 (80.52%), Query Frame = 0
BLAST of Sed0020534 vs. ExPASy TrEMBL
Match: A0A6J1CSH3 (uncharacterized protein LOC111013890 OS=Momordica charantia OX=3673 GN=LOC111013890 PE=4 SV=1) HSP 1 Score: 104.8 bits (260), Expect = 1.7e-19 Identity = 61/78 (78.21%), Postives = 65/78 (83.33%), Query Frame = 0
BLAST of Sed0020534 vs. TAIR 10
Match: AT1G51920.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: stem, stamen; EXPRESSED DURING: 4 anthesis; Has 22 Blast hits to 22 proteins in 5 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 22; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). ) HSP 1 Score: 62.4 bits (150), Expect = 1.8e-10 Identity = 37/77 (48.05%), Postives = 50/77 (64.94%), Query Frame = 0
BLAST of Sed0020534 vs. TAIR 10
Match: AT1G51915.1 (cryptdin protein-related ) HSP 1 Score: 48.1 bits (113), Expect = 3.6e-06 Identity = 30/65 (46.15%), Postives = 41/65 (63.08%), Query Frame = 0
BLAST of Sed0020534 vs. TAIR 10
Match: AT3G21352.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G21351.1); Has 26 Blast hits to 26 proteins in 5 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 26; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). ) HSP 1 Score: 40.0 bits (92), Expect = 9.8e-04 Identity = 23/61 (37.70%), Postives = 34/61 (55.74%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25
Relationships
The following mRNA feature(s) are a part of this gene:
|