Sed0020512 (gene) Chayote v1

Overview


Name	Sed0020512
Type	gene
Organism	Sechium edule (Chayote v1)
Description	serine-rich protein-related
Location	LG12: 29874460 .. 29874687 (+)
RNA-Seq Expression	Sed0020512
Synteny	Sed0020512

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTGTTACCCTCATGATTTGCAGCCACGGATGGCGAGCCGAAGGGAGGTTTTGGCTGTGCAATGCAATTGTGTCCTCACGCAGGTGGCGGCGGCGGATAGTGGGTCGGTGAAAAGGCAGTGCTTGTGCTCGCCGACCGAGCATCCAGGGTCGTTTCGTTGCAGGCTGCATCGAAGTGAGTACGTATGGGTGGGGAAGAAAATTTCTGTCCAAGATGACGTCTCATAA

mRNA sequence

ATGTGTTACCCTCATGATTTGCAGCCACGGATGGCGAGCCGAAGGGAGGTTTTGGCTGTGCAATGCAATTGTGTCCTCACGCAGGTGGCGGCGGCGGATAGTGGGTCGGTGAAAAGGCAGTGCTTGTGCTCGCCGACCGAGCATCCAGGGTCGTTTCGTTGCAGGCTGCATCGAAGTGAGTACGTATGGGTGGGGAAGAAAATTTCTGTCCAAGATGACGTCTCATAA

Coding sequence (CDS)

ATGTGTTACCCTCATGATTTGCAGCCACGGATGGCGAGCCGAAGGGAGGTTTTGGCTGTGCAATGCAATTGTGTCCTCACGCAGGTGGCGGCGGCGGATAGTGGGTCGGTGAAAAGGCAGTGCTTGTGCTCGCCGACCGAGCATCCAGGGTCGTTTCGTTGCAGGCTGCATCGAAGTGAGTACGTATGGGTGGGGAAGAAAATTTCTGTCCAAGATGACGTCTCATAA

Protein sequence

MCYPHDLQPRMASRREVLAVQCNCVLTQVAAADSGSVKRQCLCSPTEHPGSFRCRLHRSEYVWVGKKISVQDDVS

Homology

[Close]

BLAST of Sed0020512 vs. NCBI nr
Match: KAG6589902.1 (hypothetical protein SDJN03_15325, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 97.4 bits (241), Expect = 5.4e-17
Identity = 49/71 (69.01%), Postives = 54/71 (76.06%), Query Frame = 0


Query: 1  MCYPHDLQPRMASRREVLAVQCNCVLTQVA--AADSG---SVKRQCLCSPTEHPGSFRCR 60
          MCYPHD+ P    RRE L VQCN VL Q A  A +SG   SVK++CLCSPT HPGSFRCR
Sbjct: 1  MCYPHDVPP----RREFLNVQCNWVLLQTAATAVESGGGESVKKRCLCSPTRHPGSFRCR 60

Query: 61 LHRSEYVWVGK 67
          LHRSEYVWVG+
Sbjct: 61 LHRSEYVWVGR 67

[Close]

BLAST of Sed0020512 vs. NCBI nr
Match: KGN65356.1 (hypothetical protein Csa_020011 [Cucumis sativus])

HSP 1 Score: 84.0 bits (206), Expect = 6.2e-13
Identity = 41/82 (50.00%), Postives = 52/82 (63.41%), Query Frame = 0


Query: 1  MCYPHDLQPRMASRREVLAVQCNCVLTQVAAADSG----------SVKRQCLCSPTEHPG 60
          MCYPH       SRR+  ++QCN VL Q   A+            S KR+CLCSPT HPG
Sbjct: 1  MCYPH----HFLSRRDFSSLQCNWVLFQTTPAEDATPAIESCGDESGKRRCLCSPTRHPG 60

Query: 61 SFRCRLHRSEYVWVGKKISVQD 73
          SFRCRLHR+EYVWV ++ +V++
Sbjct: 61 SFRCRLHRNEYVWVARRRTVKN 78

[Close]

BLAST of Sed0020512 vs. NCBI nr
Match: KAA0046597.1 (hypothetical protein E6C27_scaffold114G001380 [Cucumis melo var. makuwa])

HSP 1 Score: 83.2 bits (204), Expect = 1.1e-12
Identity = 42/82 (51.22%), Postives = 51/82 (62.20%), Query Frame = 0


Query: 1  MCYPHDLQPRMASRREVLAVQCNCVLTQVAAAD----------SGSVKRQCLCSPTEHPG 60
          MCYPH   P    R + L+ QCN VL Q   A+            S KR+CLCSPT HPG
Sbjct: 1  MCYPHHFLP----RTDFLSPQCNWVLFQTVPAEETTAAIESCGDESGKRRCLCSPTTHPG 60

Query: 61 SFRCRLHRSEYVWVGKKISVQD 73
          SFRCRLHRSEYVWV ++ +V++
Sbjct: 61 SFRCRLHRSEYVWVARRRTVKN 78

[Close]

BLAST of Sed0020512 vs. NCBI nr
Match: PON73298.1 (hypothetical protein PanWU01x14_058020 [Parasponia andersonii])

HSP 1 Score: 67.4 bits (163), Expect = 6.0e-08
Identity = 32/67 (47.76%), Postives = 41/67 (61.19%), Query Frame = 0


Query: 5  HDLQPRMASRREVLAVQCNCVLTQVAAADSGSVKRQCLCSPTEHPGSFRCRLHRSEYVWV 64
          H LQ  MA+  E         L    AA  GSVK+ CLCSPT+HPGSFRCR H++EY W 
Sbjct: 21 HALQANMAAVAETANYAHAPNLEVREAAGGGSVKQYCLCSPTQHPGSFRCRQHQAEYAWG 80

Query: 65 GKKISVQ 72
          G+ + ++
Sbjct: 81 GRTLRIR 87

[Close]

BLAST of Sed0020512 vs. NCBI nr
Match: PLY76495.1 (hypothetical protein LSAT_4X103641 [Lactuca sativa])

HSP 1 Score: 67.0 bits (162), Expect = 7.8e-08
Identity = 33/66 (50.00%), Postives = 38/66 (57.58%), Query Frame = 0


Query: 1  MCYPHDLQPRMASRREVLAVQCNCVLTQV--AAADSGSVKRQCLCSPTEHPGSFRCRLHR 60
          MCYP  +        E+   +   + T V    A  G VK+QCLCSPT HPGSFRCR H 
Sbjct: 1  MCYPAGVSSISGHESEIRIRRLAALATAVNHREAGGGGVKKQCLCSPTIHPGSFRCRHHH 60

Query: 61 SEYVWV 65
          SEYVWV
Sbjct: 61 SEYVWV 66

[Close]

BLAST of Sed0020512 vs. ExPASy TrEMBL
Match: A0A0A0LZG6 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G369510 PE=4 SV=1)

HSP 1 Score: 84.0 bits (206), Expect = 3.0e-13
Identity = 41/82 (50.00%), Postives = 52/82 (63.41%), Query Frame = 0


Query: 1  MCYPHDLQPRMASRREVLAVQCNCVLTQVAAADSG----------SVKRQCLCSPTEHPG 60
          MCYPH       SRR+  ++QCN VL Q   A+            S KR+CLCSPT HPG
Sbjct: 1  MCYPH----HFLSRRDFSSLQCNWVLFQTTPAEDATPAIESCGDESGKRRCLCSPTRHPG 60

Query: 61 SFRCRLHRSEYVWVGKKISVQD 73
          SFRCRLHR+EYVWV ++ +V++
Sbjct: 61 SFRCRLHRNEYVWVARRRTVKN 78

[Close]

BLAST of Sed0020512 vs. ExPASy TrEMBL
Match: A0A5A7TXE6 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold114G001380 PE=4 SV=1)

HSP 1 Score: 83.2 bits (204), Expect = 5.1e-13
Identity = 42/82 (51.22%), Postives = 51/82 (62.20%), Query Frame = 0


Query: 1  MCYPHDLQPRMASRREVLAVQCNCVLTQVAAAD----------SGSVKRQCLCSPTEHPG 60
          MCYPH   P    R + L+ QCN VL Q   A+            S KR+CLCSPT HPG
Sbjct: 1  MCYPHHFLP----RTDFLSPQCNWVLFQTVPAEETTAAIESCGDESGKRRCLCSPTTHPG 60

Query: 61 SFRCRLHRSEYVWVGKKISVQD 73
          SFRCRLHRSEYVWV ++ +V++
Sbjct: 61 SFRCRLHRSEYVWVARRRTVKN 78

[Close]

BLAST of Sed0020512 vs. ExPASy TrEMBL
Match: A0A2P5DJ33 (Uncharacterized protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_058020 PE=4 SV=1)

HSP 1 Score: 67.4 bits (163), Expect = 2.9e-08
Identity = 32/67 (47.76%), Postives = 41/67 (61.19%), Query Frame = 0


Query: 5  HDLQPRMASRREVLAVQCNCVLTQVAAADSGSVKRQCLCSPTEHPGSFRCRLHRSEYVWV 64
          H LQ  MA+  E         L    AA  GSVK+ CLCSPT+HPGSFRCR H++EY W 
Sbjct: 21 HALQANMAAVAETANYAHAPNLEVREAAGGGSVKQYCLCSPTQHPGSFRCRQHQAEYAWG 80

Query: 65 GKKISVQ 72
          G+ + ++
Sbjct: 81 GRTLRIR 87

[Close]

BLAST of Sed0020512 vs. ExPASy TrEMBL
Match: A0A2J6KN41 (Uncharacterized protein OS=Lactuca sativa OX=4236 GN=LSAT_4X103641 PE=4 SV=1)

HSP 1 Score: 67.0 bits (162), Expect = 3.8e-08
Identity = 33/66 (50.00%), Postives = 38/66 (57.58%), Query Frame = 0


Query: 1  MCYPHDLQPRMASRREVLAVQCNCVLTQV--AAADSGSVKRQCLCSPTEHPGSFRCRLHR 60
          MCYP  +        E+   +   + T V    A  G VK+QCLCSPT HPGSFRCR H 
Sbjct: 1  MCYPAGVSSISGHESEIRIRRLAALATAVNHREAGGGGVKKQCLCSPTIHPGSFRCRHHH 60

Query: 61 SEYVWV 65
          SEYVWV
Sbjct: 61 SEYVWV 66

[Close]

BLAST of Sed0020512 vs. ExPASy TrEMBL
Match: A0A2P5F9S9 (Uncharacterized protein OS=Trema orientale OX=63057 GN=TorRG33x02_095820 PE=4 SV=1)

HSP 1 Score: 65.9 bits (159), Expect = 8.5e-08
Identity = 31/67 (46.27%), Postives = 40/67 (59.70%), Query Frame = 0


Query: 5  HDLQPRMASRREVLAVQCNCVLTQVAAADSGSVKRQCLCSPTEHPGSFRCRLHRSEYVWV 64
          H LQ  MA+  E              AA  GSVK+ CLCSPT+HPGSFRCR H++EY W 
Sbjct: 21 HALQANMAAVAETANYAHAPNFEVGEAAGGGSVKQYCLCSPTQHPGSFRCRQHQAEYAWG 80

Query: 65 GKKISVQ 72
          G+ + ++
Sbjct: 81 GRTLRIR 87

[Close]

BLAST of Sed0020512 vs. TAIR 10
Match: AT1G52342.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 50.4 bits (119), Expect = 7.1e-07
Identity = 17/35 (48.57%), Postives = 26/35 (74.29%), Query Frame = 0


Query: 30 AAADSGSVKRQCLCSPTEHPGSFRCRLHRSEYVWV 65
          +  D G  K++C+CSP++HP SF+CR H+ EY W+
Sbjct: 39 SGGDGGGGKKKCVCSPSKHPRSFKCRYHQHEYQWL 73

[Close]

BLAST of Sed0020512 vs. TAIR 10
Match: AT3G13227.1 (serine-rich protein-related )

HSP 1 Score: 48.5 bits (114), Expect = 2.7e-06
Identity = 19/30 (63.33%), Postives = 23/30 (76.67%), Query Frame = 0


Query: 29 VAAADSGSVKRQCLCSPTEHPGSFRCRLHR 59
          V  + S SV++ CLC+PT HPGSFRCR HR
Sbjct: 53 VGMSKSSSVRQNCLCAPTTHPGSFRCRYHR 82

[Close]

BLAST of Sed0020512 vs. TAIR 10
Match: AT1G67910.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 12 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G24577.1); Has 167 Blast hits to 167 proteins in 19 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 167; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 47.0 bits (110), Expect = 7.8e-06
Identity = 22/57 (38.60%), Postives = 31/57 (54.39%), Query Frame = 0


Query: 10 RMASRREVLAVQCNCVLTQVAAADSGSVKRQ-------CLCSPTEHPGSFRCRLHRS 60
          +M + + ++ V+ +          S  + RQ       CLCSPT HPGSFRCR+HRS
Sbjct: 6  QMTNNKGIMKVEIHSHFNSAVEVGSRGLSRQTSMTKTNCLCSPTTHPGSFRCRIHRS 62

[Close]

BLAST of Sed0020512 vs. TAIR 10
Match: AT1G67910.2 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 12 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G24577.1). )

HSP 1 Score: 47.0 bits (110), Expect = 7.8e-06
Identity = 22/57 (38.60%), Postives = 31/57 (54.39%), Query Frame = 0


Query: 10 RMASRREVLAVQCNCVLTQVAAADSGSVKRQ-------CLCSPTEHPGSFRCRLHRS 60
          +M + + ++ V+ +          S  + RQ       CLCSPT HPGSFRCR+HRS
Sbjct: 6  QMTNNKGIMKVEIHSHFNSAVEVGSRGLSRQTSMTKTNCLCSPTTHPGSFRCRIHRS 62

[Close]

BLAST of Sed0020512 vs. TAIR 10
Match: AT5G20370.1 (serine-rich protein-related )

HSP 1 Score: 46.6 bits (109), Expect = 1.0e-05
Identity = 18/30 (60.00%), Postives = 21/30 (70.00%), Query Frame = 0


Query: 29 VAAADSGSVKRQCLCSPTEHPGSFRCRLHR 59
          V  + +   KR+CLCSPT HPGSFRC  HR
Sbjct: 59 VTVSSNHQTKRKCLCSPTTHPGSFRCSFHR 88

The following BLAST results are available for this feature:

BLAST of Sed0020512 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6589902.1	5.4e-17	69.01	hypothetical protein SDJN03_15325, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KGN65356.1	6.2e-13	50.00	hypothetical protein Csa_020011 [Cucumis sativus]	[more]
KAA0046597.1	1.1e-12	51.22	hypothetical protein E6C27_scaffold114G001380 [Cucumis melo var. makuwa]	[more]
PON73298.1	6.0e-08	47.76	hypothetical protein PanWU01x14_058020 [Parasponia andersonii]	[more]
PLY76495.1	7.8e-08	50.00	hypothetical protein LSAT_4X103641 [Lactuca sativa]	[more]

BLAST of Sed0020512 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Sed0020512 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LZG6	3.0e-13	50.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G369510 PE=4 SV=1	[more]
A0A5A7TXE6	5.1e-13	51.22	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A2P5DJ33	2.9e-08	47.76	Uncharacterized protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_058020 PE...	[more]
A0A2J6KN41	3.8e-08	50.00	Uncharacterized protein OS=Lactuca sativa OX=4236 GN=LSAT_4X103641 PE=4 SV=1	[more]
A0A2P5F9S9	8.5e-08	46.27	Uncharacterized protein OS=Trema orientale OX=63057 GN=TorRG33x02_095820 PE=4 SV...	[more]

BLAST of Sed0020512 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G52342.1	7.1e-07	48.57	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]
AT3G13227.1	2.7e-06	63.33	serine-rich protein-related	[more]
AT1G67910.1	7.8e-06	38.60	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]
AT1G67910.2	7.8e-06	38.60	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]
AT5G20370.1	1.0e-05	60.00	serine-rich protein-related	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR33132	OSJNBB0118P14.9 PROTEIN	coord: 15..68
None	No IPR available	PANTHER	PTHR33132:SF72	OS01G0778900 PROTEIN	coord: 15..68

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0020512.1	Sed0020512.1	mRNA