Sed0020494 (gene) Chayote v1

Overview


Name	Sed0020494
Type	gene
Organism	Sechium edule (Chayote v1)
Description	RING-type domain-containing protein
Location	LG01: 13400733 .. 13401389 (+)
RNA-Seq Expression	Sed0020494
Synteny	Sed0020494

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCCATCGCCGGCGCCGCCGTCTCTGGCCTCCAGTGCGAGGTGTGGCAGCCCCAAGGCTTGTATGAAACTCCATATCCTTCATCTTCTTCGGTTAAGCCCGCTGAGTTGTTCATCGACTTCTACGTGTTTTTAAACGAAGGCGATGAGCAGATGACTCGATCTCTTGGTTATAAGAATTTCAGGCAAAGATGCACCCGAGATTCCTTCTCATGGTCGACTATTTCCTCGATGCTCTCCCAAACAAACGTGCCGTATCATCTTCAACCCTTCTTCATTCAACACATTTCCATTACGGCTCGCCGAATCGCCACACAGCCCAACAACGCTCTCTCTCCAACCATTCCTATTGTCGTCGACCTCCTCCTCCCCGTGGAGGAGGATGCTACGTCAAGCTCTCGTTTTAGAGACAGGTCGGATCGATCGAGTGTGGCTTCGATCGAGGACGTAGTATTGGAAAGGGTGGATGATGGGAGTGATAGTATTTGCGTGATTTGTTTGGATGTGATTTCGATTTCAAATGGCGCAGTTCGTATGGCTTGTTGTTTCCATGTTTATCATCGCTGTTGTATTCACAAATGGCTCCAACTCACTAACCGTTGCCCATTGTGTCGCCGCTCTCACATAATATGCCCAACACCAACAGTGAATTCATGA

mRNA sequence

ATGTCCATCGCCGGCGCCGCCGTCTCTGGCCTCCAGTGCGAGGTGTGGCAGCCCCAAGGCTTGTATGAAACTCCATATCCTTCATCTTCTTCGGTTAAGCCCGCTGAGTTGTTCATCGACTTCTACGTGTTTTTAAACGAAGGCGATGAGCAGATGACTCGATCTCTTGGTTATAAGAATTTCAGGCAAAGATGCACCCGAGATTCCTTCTCATGGTCGACTATTTCCTCGATGCTCTCCCAAACAAACGTGCCGTATCATCTTCAACCCTTCTTCATTCAACACATTTCCATTACGGCTCGCCGAATCGCCACACAGCCCAACAACGCTCTCTCTCCAACCATTCCTATTGTCGTCGACCTCCTCCTCCCCGTGGAGGAGGATGCTACGTCAAGCTCTCGTTTTAGAGACAGGTCGGATCGATCGAGTGTGGCTTCGATCGAGGACGTAGTATTGGAAAGGGTGGATGATGGGAGTGATAGTATTTGCGTGATTTGTTTGGATGTGATTTCGATTTCAAATGGCGCAGTTCGTATGGCTTGTTGTTTCCATGTTTATCATCGCTGTTGTATTCACAAATGGCTCCAACTCACTAACCGTTGCCCATTGTGTCGCCGCTCTCACATAATATGCCCAACACCAACAGTGAATTCATGA

Coding sequence (CDS)

ATGTCCATCGCCGGCGCCGCCGTCTCTGGCCTCCAGTGCGAGGTGTGGCAGCCCCAAGGCTTGTATGAAACTCCATATCCTTCATCTTCTTCGGTTAAGCCCGCTGAGTTGTTCATCGACTTCTACGTGTTTTTAAACGAAGGCGATGAGCAGATGACTCGATCTCTTGGTTATAAGAATTTCAGGCAAAGATGCACCCGAGATTCCTTCTCATGGTCGACTATTTCCTCGATGCTCTCCCAAACAAACGTGCCGTATCATCTTCAACCCTTCTTCATTCAACACATTTCCATTACGGCTCGCCGAATCGCCACACAGCCCAACAACGCTCTCTCTCCAACCATTCCTATTGTCGTCGACCTCCTCCTCCCCGTGGAGGAGGATGCTACGTCAAGCTCTCGTTTTAGAGACAGGTCGGATCGATCGAGTGTGGCTTCGATCGAGGACGTAGTATTGGAAAGGGTGGATGATGGGAGTGATAGTATTTGCGTGATTTGTTTGGATGTGATTTCGATTTCAAATGGCGCAGTTCGTATGGCTTGTTGTTTCCATGTTTATCATCGCTGTTGTATTCACAAATGGCTCCAACTCACTAACCGTTGCCCATTGTGTCGCCGCTCTCACATAATATGCCCAACACCAACAGTGAATTCATGA

Protein sequence

MSIAGAAVSGLQCEVWQPQGLYETPYPSSSSVKPAELFIDFYVFLNEGDEQMTRSLGYKNFRQRCTRDSFSWSTISSMLSQTNVPYHLQPFFIQHISITARRIATQPNNALSPTIPIVVDLLLPVEEDATSSSRFRDRSDRSSVASIEDVVLERVDDGSDSICVICLDVISISNGAVRMACCFHVYHRCCIHKWLQLTNRCPLCRRSHIICPTPTVNS

Homology

[Close]

BLAST of Sed0020494 vs. NCBI nr
Match: XP_023001523.1 (uncharacterized protein LOC111495638 [Cucurbita maxima])

HSP 1 Score: 214.5 bits (545), Expect = 8.8e-52
Identity = 131/217 (60.37%), Postives = 161/217 (74.19%), Query Frame = 0


Query: 4   AGAAVSGLQCEVWQPQGLYET--PYPSSSSVKPAELFIDFYV--FLNEGDEQMTRSLGYK 63
           A AAVSGL CEVWQPQ   ET   + SSSS  P E FIDFYV  +  +GD Q+  +L YK
Sbjct: 6   AAAAVSGLHCEVWQPQDFSETHCSFSSSSSESP-EFFIDFYVSSYATQGD-QIISTLRYK 65

Query: 64  NFRQRC---TRDSFSWSTISSMLSQTNVPYHLQPFFIQHISITARRIATQPNNALSPTIP 123
           NFRQRC   T+DSFSWS IS+MLS+TNVPYHLQPFFIQ ISI+AR IAT+P NALS TIP
Sbjct: 66  NFRQRCDVLTQDSFSWSAISTMLSETNVPYHLQPFFIQQISISARGIATEPTNALSRTIP 125

Query: 124 IVVDLLLPVE--EDAT--SSSRFRDRSDRSSVASIEDVVLERVD-DGSDSICVICL-DVI 183
           +VV+L+LP E  ED++  S +     S R+S ASI++  +ERV+ +G+ S CVICL D++
Sbjct: 126 MVVELVLPEEAMEDSSYGSDTIMGTGSRRASRASIQE--MERVEMNGALSDCVICLDDIV 185

Query: 184 SISN--GAVRMACCFHVYHRCCIHKWLQLTNRCPLCR 206
           S+ +   A+RM  C H+YHR CIHKWLQL+NRCPLCR
Sbjct: 186 SVGSEIDALRMP-CLHIYHRNCIHKWLQLSNRCPLCR 217

[Close]

BLAST of Sed0020494 vs. NCBI nr
Match: XP_038895883.1 (E3 ubiquitin-protein ligase synoviolin A-like [Benincasa hispida])

HSP 1 Score: 213.0 bits (541), Expect = 2.6e-51
Identity = 131/212 (61.79%), Postives = 153/212 (72.17%), Query Frame = 0


Query: 9   SGLQCEVWQPQGLYETPYPSSSS--VKPAELFIDFYV--FLNEGDEQMTRSLGYKNFRQR 68
           SGL CEVWQPQ   ETP  SSSS   +P E FIDFYV  +  +GDE +  +L YKNFRQR
Sbjct: 10  SGLHCEVWQPQDFSETPSSSSSSSQSQPPEFFIDFYVSSYATQGDE-IISTLRYKNFRQR 69

Query: 69  C---TRDSFSWSTISSMLSQTNVPYHLQPFFIQHISITARRIATQPNNALSPTIPIVVDL 128
           C   T+DSFSWS ISSMLS+TNVPYHLQPFFI  ISI AR IAT+P NALS TIP+VV+L
Sbjct: 70  CDVLTQDSFSWSAISSMLSETNVPYHLQPFFIHQISIRARGIATEPINALSRTIPMVVEL 129

Query: 129 LLPVE--EDAT--SSSRFRDRSDRSSVASIEDVVLERVD-DGSDSICVICLD-VISISN- 188
           +LP E  ED++  S +     S R+S ASI+D  +ERV+ DG  S CVICLD ++SI   
Sbjct: 130 MLPEEAMEDSSYGSDTHMGIVSGRASRASIQD--MERVEIDGVLSDCVICLDEIVSIGYE 189

Query: 189 -GAVRMACCFHVYHRCCIHKWLQLTNRCPLCR 206
             AVRM  C HVYHR CIHKWL+ +NRCPLCR
Sbjct: 190 IDAVRMP-CLHVYHRNCIHKWLEFSNRCPLCR 217

[Close]

BLAST of Sed0020494 vs. NCBI nr
Match: XP_023519803.1 (RING-H2 finger protein ATL77-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 212.6 bits (540), Expect = 3.4e-51
Identity = 132/217 (60.83%), Postives = 160/217 (73.73%), Query Frame = 0


Query: 4   AGAAVSGLQCEVWQPQGLYET--PYPSSSSVKPAELFIDFYV--FLNEGDEQMTRSLGYK 63
           A AAVSGL CEVWQPQ L ET   + SSSS  P E FIDFYV  +  +GD Q+  +L YK
Sbjct: 6   AAAAVSGLHCEVWQPQDLSETHCSFSSSSSEFP-EFFIDFYVSSYATQGD-QIISTLRYK 65

Query: 64  NFRQRC---TRDSFSWSTISSMLSQTNVPYHLQPFFIQHISITARRIATQPNNALSPTIP 123
           NFRQRC   T+DSFSWS IS+MLS+TNVPYHLQPFFIQ ISI+AR IAT+P NALS TIP
Sbjct: 66  NFRQRCDVLTQDSFSWSAISTMLSETNVPYHLQPFFIQQISISARGIATEPTNALSRTIP 125

Query: 124 IVVDLLLPVE--EDA--TSSSRFRDRSDRSSVASIEDVVLERVD-DGSDSICVICL-DVI 183
           +VV+L+LP E  ED+   S +     S R+S ASI++  +ERV+ +G  S CVICL D++
Sbjct: 126 MVVELVLPEEAMEDSGYGSDTIMGTGSRRASRASIQE--MERVEMNGVLSDCVICLDDIV 185

Query: 184 SISN--GAVRMACCFHVYHRCCIHKWLQLTNRCPLCR 206
           S+ +   A+RM  C H+YHR CIHKWLQL+NRCPLCR
Sbjct: 186 SVGSEIDALRMP-CLHIYHRNCIHKWLQLSNRCPLCR 217

[Close]

BLAST of Sed0020494 vs. NCBI nr
Match: KAG6584266.1 (E3 ubiquitin-protein ligase MPSR1, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 212.2 bits (539), Expect = 4.4e-51
Identity = 131/217 (60.37%), Postives = 159/217 (73.27%), Query Frame = 0


Query: 4   AGAAVSGLQCEVWQPQGLYET--PYPSSSSVKPAELFIDFYV--FLNEGDEQMTRSLGYK 63
           A AAVSGL CEVWQPQ   ET   + SSSS  P E FIDFYV  +  +GD Q+  +L YK
Sbjct: 6   AAAAVSGLHCEVWQPQDFSETHCSFSSSSSESP-EFFIDFYVSSYATQGD-QIISTLRYK 65

Query: 64  NFRQRC---TRDSFSWSTISSMLSQTNVPYHLQPFFIQHISITARRIATQPNNALSPTIP 123
           NFRQRC   T+DSFSWS IS+MLS+TNVPYHLQPFFIQ ISI+AR IAT+P NALS TIP
Sbjct: 66  NFRQRCDVLTQDSFSWSAISTMLSETNVPYHLQPFFIQQISISARGIATEPTNALSRTIP 125

Query: 124 IVVDLLLPVE--EDA--TSSSRFRDRSDRSSVASIEDVVLERVD-DGSDSICVICL-DVI 183
           +VV+L+LP E  ED+   S +     S R+S ASI++  +ERV+ +G  S CVICL D++
Sbjct: 126 MVVELVLPEEAMEDSGYGSDTIMGTGSRRASRASIQE--MERVEMNGVLSDCVICLDDIV 185

Query: 184 SISN--GAVRMACCFHVYHRCCIHKWLQLTNRCPLCR 206
           S+ +   A+RM  C H+YHR CIHKWLQL+NRCPLCR
Sbjct: 186 SVGSEIDALRMP-CLHIYHRNCIHKWLQLSNRCPLCR 217

[Close]

BLAST of Sed0020494 vs. NCBI nr
Match: KAG7019862.1 (E3 ubiquitin-protein ligase SIRP1, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 210.7 bits (535), Expect = 1.3e-50
Identity = 130/217 (59.91%), Postives = 158/217 (72.81%), Query Frame = 0


Query: 4   AGAAVSGLQCEVWQPQGLYET--PYPSSSSVKPAELFIDFYV--FLNEGDEQMTRSLGYK 63
           A AAVSGL CEVWQPQ   ET   + SSSS  P E FIDFYV  +  +GD Q+  +L YK
Sbjct: 6   AAAAVSGLHCEVWQPQDFSETHCSFSSSSSESP-EFFIDFYVSSYATQGD-QIISTLRYK 65

Query: 64  NFRQRC---TRDSFSWSTISSMLSQTNVPYHLQPFFIQHISITARRIATQPNNALSPTIP 123
           NFRQRC   T+DSFSWS IS+MLS+TNVPYHLQPFFIQ ISI+AR IAT+P NALS TIP
Sbjct: 66  NFRQRCDVLTQDSFSWSAISTMLSETNVPYHLQPFFIQQISISARGIATEPTNALSRTIP 125

Query: 124 IVVDLLLPVE--EDA--TSSSRFRDRSDRSSVASIEDVVLERVD-DGSDSICVICL-DVI 183
           +VV+L+LP E  ED+   S +     S R+S  SI++  +ERV+ +G  S CVICL D++
Sbjct: 126 MVVELVLPEEAMEDSGYGSDTIMGTGSRRASRTSIQE--MERVEMNGVLSDCVICLDDIV 185

Query: 184 SISN--GAVRMACCFHVYHRCCIHKWLQLTNRCPLCR 206
           S+ +   A+RM  C H+YHR CIHKWLQL+NRCPLCR
Sbjct: 186 SVGSEIDALRMP-CLHIYHRNCIHKWLQLSNRCPLCR 217

[Close]

BLAST of Sed0020494 vs. ExPASy Swiss-Prot
Match: O82353 (RING-H2 finger protein ATL67 OS=Arabidopsis thaliana OX=3702 GN=ATL67 PE=2 SV=1)

HSP 1 Score: 49.3 bits (116), Expect = 6.5e-05
Identity = 23/58 (39.66%), Postives = 30/58 (51.72%), Query Frame = 0


Query: 158 GSDSICVICLDVISISNGAVRMACCFHVYHRCCIHKWLQLTNRCPLCRRSHIICPTPT 216
           G D+ C ICL     +     M  C H +H CC+  WL+L   CP+CR S +  PT T
Sbjct: 133 GGDTTCSICLCEYKEAEMLRMMPECKHYFHLCCLDAWLKLNGSCPVCRNSPLPTPTST 190

[Close]

BLAST of Sed0020494 vs. ExPASy TrEMBL
Match: A0A6J1KQS3 (uncharacterized protein LOC111495638 OS=Cucurbita maxima OX=3661 GN=LOC111495638 PE=4 SV=1)

HSP 1 Score: 214.5 bits (545), Expect = 4.3e-52
Identity = 131/217 (60.37%), Postives = 161/217 (74.19%), Query Frame = 0


Query: 4   AGAAVSGLQCEVWQPQGLYET--PYPSSSSVKPAELFIDFYV--FLNEGDEQMTRSLGYK 63
           A AAVSGL CEVWQPQ   ET   + SSSS  P E FIDFYV  +  +GD Q+  +L YK
Sbjct: 6   AAAAVSGLHCEVWQPQDFSETHCSFSSSSSESP-EFFIDFYVSSYATQGD-QIISTLRYK 65

Query: 64  NFRQRC---TRDSFSWSTISSMLSQTNVPYHLQPFFIQHISITARRIATQPNNALSPTIP 123
           NFRQRC   T+DSFSWS IS+MLS+TNVPYHLQPFFIQ ISI+AR IAT+P NALS TIP
Sbjct: 66  NFRQRCDVLTQDSFSWSAISTMLSETNVPYHLQPFFIQQISISARGIATEPTNALSRTIP 125

Query: 124 IVVDLLLPVE--EDAT--SSSRFRDRSDRSSVASIEDVVLERVD-DGSDSICVICL-DVI 183
           +VV+L+LP E  ED++  S +     S R+S ASI++  +ERV+ +G+ S CVICL D++
Sbjct: 126 MVVELVLPEEAMEDSSYGSDTIMGTGSRRASRASIQE--MERVEMNGALSDCVICLDDIV 185

Query: 184 SISN--GAVRMACCFHVYHRCCIHKWLQLTNRCPLCR 206
           S+ +   A+RM  C H+YHR CIHKWLQL+NRCPLCR
Sbjct: 186 SVGSEIDALRMP-CLHIYHRNCIHKWLQLSNRCPLCR 217

[Close]

BLAST of Sed0020494 vs. ExPASy TrEMBL
Match: A0A5D3BJ05 (E3 ubiquitin-protein ligase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold248G003020 PE=4 SV=1)

HSP 1 Score: 208.8 bits (530), Expect = 2.3e-50
Identity = 129/219 (58.90%), Postives = 150/219 (68.49%), Query Frame = 0


Query: 4   AGAAVSGLQCEVWQPQGLYETPYPSSSS--VKPAELFIDFYV--FLNEGDEQMTRSLGYK 63
           A AA+SGL CEVWQPQ   E    SSSS   +P E FIDFYV  +   GDE ++ +L YK
Sbjct: 3   AAAAISGLHCEVWQPQDFSEPSCSSSSSSQFQPPEFFIDFYVSSYATHGDEVIS-TLRYK 62

Query: 64  NFRQRC---TRDSFSWSTISSMLSQTNVPYHLQPFFIQHISITARRIATQPNNALSPTIP 123
           NFRQRC   T+DSFSWS ISSMLS+TNVPYHLQPFFI  ISI AR IAT+P NALS TIP
Sbjct: 63  NFRQRCDVLTQDSFSWSAISSMLSETNVPYHLQPFFIHQISIRARGIATEPINALSRTIP 122

Query: 124 IVVDLLLPVEEDATSSSRFRDR------SDRSSVASIEDVVLERVD-DGSDSICVICLD- 183
           +VV+L+LP  EDA   S +         S R+S ASI++  +ER++ DG  S CVICLD 
Sbjct: 123 MVVELMLP--EDAMEGSGYGSEPHMGIGSGRASRASIQE--MERIEIDGVLSDCVICLDE 182

Query: 184 --VISISNGAVRMACCFHVYHRCCIHKWLQLTNRCPLCR 206
              I     AVRM  C HVYH  CIHKWL+L+NRCPLCR
Sbjct: 183 IGSIGCEIDAVRMP-CLHVYHLNCIHKWLELSNRCPLCR 215

[Close]

BLAST of Sed0020494 vs. ExPASy TrEMBL
Match: A0A1S3AU71 (uncharacterized protein LOC103482872 OS=Cucumis melo OX=3656 GN=LOC103482872 PE=4 SV=1)

HSP 1 Score: 208.8 bits (530), Expect = 2.3e-50
Identity = 129/219 (58.90%), Postives = 150/219 (68.49%), Query Frame = 0


Query: 4   AGAAVSGLQCEVWQPQGLYETPYPSSSS--VKPAELFIDFYV--FLNEGDEQMTRSLGYK 63
           A AA+SGL CEVWQPQ   E    SSSS   +P E FIDFYV  +   GDE ++ +L YK
Sbjct: 3   AAAAISGLHCEVWQPQDFSEPSCSSSSSSQFQPPEFFIDFYVSSYATHGDEVIS-TLRYK 62

Query: 64  NFRQRC---TRDSFSWSTISSMLSQTNVPYHLQPFFIQHISITARRIATQPNNALSPTIP 123
           NFRQRC   T+DSFSWS ISSMLS+TNVPYHLQPFFI  ISI AR IAT+P NALS TIP
Sbjct: 63  NFRQRCDVLTQDSFSWSAISSMLSETNVPYHLQPFFIHQISIRARGIATEPINALSRTIP 122

Query: 124 IVVDLLLPVEEDATSSSRFRDR------SDRSSVASIEDVVLERVD-DGSDSICVICLD- 183
           +VV+L+LP  EDA   S +         S R+S ASI++  +ER++ DG  S CVICLD 
Sbjct: 123 MVVELMLP--EDAMEGSGYGSEPHMGIGSGRASRASIQE--MERIEIDGVLSDCVICLDE 182

Query: 184 --VISISNGAVRMACCFHVYHRCCIHKWLQLTNRCPLCR 206
              I     AVRM  C HVYH  CIHKWL+L+NRCPLCR
Sbjct: 183 IGSIGCEIDAVRMP-CLHVYHLNCIHKWLELSNRCPLCR 215

[Close]

BLAST of Sed0020494 vs. ExPASy TrEMBL
Match: A0A0A0LR28 (RING-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G045460 PE=4 SV=1)

HSP 1 Score: 200.3 bits (508), Expect = 8.4e-48
Identity = 125/217 (57.60%), Postives = 146/217 (67.28%), Query Frame = 0


Query: 7   AVSGLQCEVWQPQGLYETPYPSSSS---VKPAELFIDFYV--FLNEGDEQMTRSLGYKNF 66
           A+SGL CEVWQPQ   E    SSSS    +P E FIDFYV  +   GDE ++ +L YKNF
Sbjct: 5   AISGLHCEVWQPQDFSEPSCSSSSSSSQFQPPEFFIDFYVSSYATHGDEVIS-TLRYKNF 64

Query: 67  RQRC---TRDSFSWSTISSMLSQTNVPYHLQPFFIQHISITARRIATQPNNALSPTIPIV 126
           RQRC   T+DSFSWS ISSMLS+TNVPYHLQPFFI  IS  AR IAT+P NALS TIP+V
Sbjct: 65  RQRCDVLTQDSFSWSAISSMLSETNVPYHLQPFFIHQISTRARGIATEPINALSRTIPMV 124

Query: 127 VDLLLPVEEDATSSSRFRDR------SDRSSVASIEDVVLERVD-DGSDSICVICLDVIS 186
           V+L+LP  EDA   S +         S R+S ASI++  +ER++ DG  S CVICLD I 
Sbjct: 125 VELILP--EDAMEDSGYGSEPHMGIGSGRASRASIQE--MERIEIDGVLSDCVICLDEIG 184

Query: 187 ISNGA---VRMACCFHVYHRCCIHKWLQLTNRCPLCR 206
            S G    V    C HVYH  CIHKWL+L+NRCPLCR
Sbjct: 185 -SIGCEIDVVQMPCLHVYHLNCIHKWLELSNRCPLCR 215

[Close]

BLAST of Sed0020494 vs. ExPASy TrEMBL
Match: A0A6J1CAF5 (E3 ubiquitin-protein ligase CIP8-like OS=Momordica charantia OX=3673 GN=LOC111008905 PE=4 SV=1)

HSP 1 Score: 191.4 bits (485), Expect = 3.9e-45
Identity = 116/209 (55.50%), Postives = 141/209 (67.46%), Query Frame = 0


Query: 7   AVSGLQCEVWQPQGLYETPYPSSSSVKPAELFIDFYV--FLNEGDEQMTRSLGYKNFRQR 66
           + +GL CEVWQPQ   E+   SSSS +P E FID YV  + N+G E ++ SL YKNFR+R
Sbjct: 2   SAAGLHCEVWQPQEWAESDCSSSSS-EPPEFFIDLYVSSYANQGGETIS-SLRYKNFRRR 61

Query: 67  ---CTRDSFSWSTISSMLSQTNVPYHLQPFFIQHISITARRIATQPNNALSPTIPIVVDL 126
               T+DS SWS IS+MLS+T+VPYHLQPFFIQHIS+ ARRIA QP NALS TIPIVV+L
Sbjct: 62  RDVFTQDSLSWSAISTMLSETSVPYHLQPFFIQHISLRARRIAAQPTNALSRTIPIVVEL 121

Query: 127 LLPVEEDATSSS----RFRDRSDRSSVASIEDVVLERVDDG-SDSICVICLDVISISNGA 186
           +LP+ E+  S S    R  +   R+S ASIE++    ++ G     C ICLD   I  GA
Sbjct: 122 VLPLPEEEESGSGSDPRVPNGPGRASRASIEEMERAEIELGICGGDCAICLD--EIECGA 181

Query: 187 VRMACCFHVYHRCCIHKWLQLTNRCPLCR 206
           V M C  H+YHR CI KWLQ  N CPLCR
Sbjct: 182 VGMPCS-HIYHRNCIVKWLQQNNLCPLCR 205

[Close]

BLAST of Sed0020494 vs. TAIR 10
Match: AT2G46160.1 (RING/U-box superfamily protein )

HSP 1 Score: 49.3 bits (116), Expect = 4.6e-06
Identity = 23/58 (39.66%), Postives = 30/58 (51.72%), Query Frame = 0


Query: 158 GSDSICVICLDVISISNGAVRMACCFHVYHRCCIHKWLQLTNRCPLCRRSHIICPTPT 216
           G D+ C ICL     +     M  C H +H CC+  WL+L   CP+CR S +  PT T
Sbjct: 133 GGDTTCSICLCEYKEAEMLRMMPECKHYFHLCCLDAWLKLNGSCPVCRNSPLPTPTST 190

[Close]

BLAST of Sed0020494 vs. TAIR 10
Match: AT5G41440.1 (RING/U-box superfamily protein )

HSP 1 Score: 48.9 bits (115), Expect = 6.0e-06
Identity = 21/63 (33.33%), Postives = 37/63 (58.73%), Query Frame = 0


Query: 146 SIEDVV-LERVDDGSDSICVICLDVISISNGAVRMACCFHVYHRCCIHKWLQLTNRCPLC 205
           ++E ++ +E V++G +  C ICL+   I +  + +  C HV+HR C+  W+     CP+C
Sbjct: 60  TVETIIKVEDVEEGDEGCCSICLEEFKIGHELMCIKKCRHVFHRFCMLSWIDANRNCPIC 119

Query: 206 RRS 208
           R S
Sbjct: 120 RCS 122

[Close]

BLAST of Sed0020494 vs. TAIR 10
Match: AT5G41430.1 (RING/U-box superfamily protein )

HSP 1 Score: 48.1 bits (113), Expect = 1.0e-05
Identity = 25/63 (39.68%), Postives = 38/63 (60.32%), Query Frame = 0


Query: 145 ASIEDVVLERVD-DGSDSI-CVICLDVISISNGAVRMACCFHVYHRCCIHKWLQLTNRCP 204
           ASIE++  + ++ +G D I C ICL+ +   +  +R+  C HV+HR CI  WL+    CP
Sbjct: 97  ASIEEMEFKDIEKEGFDEIGCSICLEELEDGHEIIRIKKCRHVFHRSCIDSWLKQNRSCP 156

Query: 205 LCR 206
            CR
Sbjct: 157 NCR 159

[Close]

BLAST of Sed0020494 vs. TAIR 10
Match: AT1G60360.1 (RING/U-box superfamily protein )

HSP 1 Score: 47.8 bits (112), Expect = 1.3e-05
Identity = 19/46 (41.30%), Postives = 28/46 (60.87%), Query Frame = 0


Query: 161 SICVICLDVISISNGAVRMACCFHVYHRCCIHKWLQLTNRCPLCRR 207
           S C +C++   +   A  +  C H+YH+ CI  WL+L N CP+CRR
Sbjct: 222 SQCTVCMEEFIVGGDATELP-CKHIYHKDCIVPWLRLNNSCPICRR 266

[Close]

BLAST of Sed0020494 vs. TAIR 10
Match: AT5G37230.1 (RING/U-box superfamily protein )

HSP 1 Score: 47.4 bits (111), Expect = 1.7e-05
Identity = 31/96 (32.29%), Postives = 47/96 (48.96%), Query Frame = 0


Query: 116 PIVVDLLLPVEEDATSSS---RFRDRSDRSSVASIEDVVLERVDDGSDSICVICLDVISI 175
           P  V   + V  D    S   R RD   R  +   + + L  + D  ++ C IC++  S 
Sbjct: 105 PFSVSFYVRVTRDVMLPSIVVRSRDMFQR--LLEEQTMELTNLGDEEETTCSICMEDFSE 164

Query: 176 S--NGAVRMACCFHVYHRCCIHKWLQLTNRCPLCRR 207
           S  +  + +  CFH++H+ CI KWL+    CPLCRR
Sbjct: 165 SHDDNIILLPDCFHLFHQSCIFKWLKRQRSCPLCRR 198

The following BLAST results are available for this feature:

BLAST of Sed0020494 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023001523.1	8.8e-52	60.37	uncharacterized protein LOC111495638 [Cucurbita maxima]	[more]
XP_038895883.1	2.6e-51	61.79	E3 ubiquitin-protein ligase synoviolin A-like [Benincasa hispida]	[more]
XP_023519803.1	3.4e-51	60.83	RING-H2 finger protein ATL77-like [Cucurbita pepo subsp. pepo]	[more]
KAG6584266.1	4.4e-51	60.37	E3 ubiquitin-protein ligase MPSR1, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAG7019862.1	1.3e-50	59.91	E3 ubiquitin-protein ligase SIRP1, partial [Cucurbita argyrosperma subsp. argyro...	[more]

BLAST of Sed0020494 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O82353	6.5e-05	39.66	RING-H2 finger protein ATL67 OS=Arabidopsis thaliana OX=3702 GN=ATL67 PE=2 SV=1	[more]

BLAST of Sed0020494 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1KQS3	4.3e-52	60.37	uncharacterized protein LOC111495638 OS=Cucurbita maxima OX=3661 GN=LOC111495638...	[more]
A0A5D3BJ05	2.3e-50	58.90	E3 ubiquitin-protein ligase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaf...	[more]
A0A1S3AU71	2.3e-50	58.90	uncharacterized protein LOC103482872 OS=Cucumis melo OX=3656 GN=LOC103482872 PE=...	[more]
A0A0A0LR28	8.4e-48	57.60	RING-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G045460 P...	[more]
A0A6J1CAF5	3.9e-45	55.50	E3 ubiquitin-protein ligase CIP8-like OS=Momordica charantia OX=3673 GN=LOC11100...	[more]

BLAST of Sed0020494 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G46160.1	4.6e-06	39.66	RING/U-box superfamily protein	[more]
AT5G41440.1	6.0e-06	33.33	RING/U-box superfamily protein	[more]
AT5G41430.1	1.0e-05	39.68	RING/U-box superfamily protein	[more]
AT1G60360.1	1.3e-05	41.30	RING/U-box superfamily protein	[more]
AT5G37230.1	1.7e-05	32.29	RING/U-box superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001841	Zinc finger, RING-type	SMART	SM00184	ring_2	coord: 163..204 e-value: 5.5E-4 score: 29.2
IPR001841	Zinc finger, RING-type	PFAM	PF13639	zf-RING_2	coord: 163..205 e-value: 1.6E-8 score: 34.8
IPR001841	Zinc finger, RING-type	PROSITE	PS50089	ZF_RING_2	coord: 163..205 score: 11.869652
IPR013083	Zinc finger, RING/FYVE/PHD-type	GENE3D	3.30.40.10	Zinc/RING finger domain, C3HC4 (zinc finger)	coord: 126..209 e-value: 1.6E-14 score: 55.3
None	No IPR available	PANTHER	PTHR15710:SF138	FINGER PROTEIN, PUTATIVE-RELATED	coord: 37..205
None	No IPR available	PANTHER	PTHR15710	E3 UBIQUITIN-PROTEIN LIGASE PRAJA	coord: 37..205
None	No IPR available	SUPERFAMILY	57850	RING/U-box	coord: 148..210

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0020494.1	Sed0020494.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0140096	catalytic activity, acting on a protein
molecular_function	GO:0016740	transferase activity