Sed0020486 (gene) Chayote v1

Overview


Name	Sed0020486
Type	gene
Organism	Sechium edule (Chayote v1)
Description	Non-specific lipid-transfer protein
Location	LG07: 5252585 .. 5253810 (+)
RNA-Seq Expression	Sed0020486
Synteny	Sed0020486

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CTACATAAAGTTCAAACATCACTCATCTCCAATCCCCATAAGCCAAGCCATGAAATCTCTTAAGCTTGTTGTTGCTATAGTGCTTGTTGTTGTGGTGCAGCTGGTTGGTCAAAACTCAGAGGCTGCAATTACATGCAATGATGTGAGTGGGGACTTGTTGCCATGTGTGAGCTACCTTGTGAGTGGGAGTGGGAATCCTCCAAGTGCTTGCTGTGATGGTCTCAAAACACTTTTAGGTACAGCCACAAGCGTTGATGACAAGAAAACTGCTTGTAATTGCATCAAGTCGGCTGCTGGTAGTATCAATTACAATCTTAAATTGGCCCAAGAACTTCCTGCCAATTGTGGTGTTACCCTGCCTTTCCCGATCTCGGCTGACCTCGATTGTTCTCGGTATGAAAGTTCATCGATTAAAATAAAATTTTATTCTTTTTTATGTTGAAGTTATTGTGCTCTTAAAATTATTAGTCGTCTAATCGGTTTAGTTTGGTATTGTTTGCCAAATTTGTATTGATAAGTAAAGGCGTAAAAAAACTGACAATCCAAATAATCCGAACTACACAACTTAAATTGTAAGAGTTGAGTTTGATTATTATATTATTTGGGTTGATTAGTTGGGTCACAATTTTGTAATTTTCATTGGGTTGGGTCGGTTCTTGGGTTAGCCAATTTCTGGCTCGTTCAACCCGACCTAACTTTGTAAGATTCATTAATAAAATATGTTCTTAGTATATTGGTAAGAAACATACATAATTAGATGGGTAACCTAGGTCTAAATATAGCATCATGCACTTTTTTGTTTTTTACCTATTTACGAGCTAGAGTAGAGTCTTAGAGGAGAAAAAAAAATATAAATGCAAAAAAAAAGAAGAAAAACTATTCGGGAAATTATTTATGATCCATCTAAGTTGCTTGTTTTCTAATTTCTTCTTATTTTTTTTCGAACAAACTAATGTTAATTAGCAAAGCATATAATTTTTGTGTGTTTAATTTTCAGGATTAGTTGATTCTGATACAACATTTGATCAGAAGGGACAAGAGATATGCCAGCATTCTACTATAAAGTTGGAGAAATTTCTACATATTATGTAATAAAATAAAACTAGATGGAATGGGAATCTAATCTCATGGATTTTTAGATTCCTGTATGTCTTGATATCATGTGTGCTGCAGTGTGTGTTTTTGTTTGTTTTTCTTATATATGCAATATAAAATATGTTAGCCTA

mRNA sequence

CTACATAAAGTTCAAACATCACTCATCTCCAATCCCCATAAGCCAAGCCATGAAATCTCTTAAGCTTGTTGTTGCTATAGTGCTTGTTGTTGTGGTGCAGCTGGTTGGTCAAAACTCAGAGGCTGCAATTACATGCAATGATGTGAGTGGGGACTTGTTGCCATGTGTGAGCTACCTTGTGAGTGGGAGTGGGAATCCTCCAAGTGCTTGCTGTGATGGTCTCAAAACACTTTTAGGTACAGCCACAAGCGTTGATGACAAGAAAACTGCTTGTAATTGCATCAAGTCGGCTGCTGGTAGTATCAATTACAATCTTAAATTGGCCCAAGAACTTCCTGCCAATTGTGGTGTTACCCTGCCTTTCCCGATCTCGGCTGACCTCGATTGTTCTCGGATTAGTTGATTCTGATACAACATTTGATCAGAAGGGACAAGAGATATGCCAGCATTCTACTATAAAGTTGGAGAAATTTCTACATATTATGTAATAAAATAAAACTAGATGGAATGGGAATCTAATCTCATGGATTTTTAGATTCCTGTATGTCTTGATATCATGTGTGCTGCAGTGTGTGTTTTTGTTTGTTTTTCTTATATATGCAATATAAAATATGTTAGCCTA

Coding sequence (CDS)

ATGAAATCTCTTAAGCTTGTTGTTGCTATAGTGCTTGTTGTTGTGGTGCAGCTGGTTGGTCAAAACTCAGAGGCTGCAATTACATGCAATGATGTGAGTGGGGACTTGTTGCCATGTGTGAGCTACCTTGTGAGTGGGAGTGGGAATCCTCCAAGTGCTTGCTGTGATGGTCTCAAAACACTTTTAGGTACAGCCACAAGCGTTGATGACAAGAAAACTGCTTGTAATTGCATCAAGTCGGCTGCTGGTAGTATCAATTACAATCTTAAATTGGCCCAAGAACTTCCTGCCAATTGTGGTGTTACCCTGCCTTTCCCGATCTCGGCTGACCTCGATTGTTCTCGGATTAGTTGA

Protein sequence

MKSLKLVVAIVLVVVVQLVGQNSEAAITCNDVSGDLLPCVSYLVSGSGNPPSACCDGLKTLLGTATSVDDKKTACNCIKSAAGSINYNLKLAQELPANCGVTLPFPISADLDCSRIS

Homology

[Close]

BLAST of Sed0020486 vs. NCBI nr
Match: KAG7025691.1 (Non-specific lipid-transfer protein 8 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 152.9 bits (385), Expect = 1.7e-33
Identity = 74/117 (63.25%), Postives = 93/117 (79.49%), Query Frame = 0


Query: 1   MKSLKLVVAIVLVVVVQLVGQNSEAAITCNDVSGDLLPCVSYLVSGSGNPPSACCDGLKT 60
           M SLK+ +  ++++++    Q SEAAI+CNDV+ DL+PCVSYL+SGSG PPSACCDG K 
Sbjct: 1   MASLKVTIVCMMLLLL----QESEAAISCNDVTKDLMPCVSYLMSGSGKPPSACCDGAKA 60

Query: 61  LLGTATSVDDKKTACNCIKSAAGSINYNLKLAQELPANCGVTLPFPISADLDCSRIS 118
           L   ATS DDKK AC CIKS AGS+ YN+KLA++LP NCG+TLPF ISA +DCS+IS
Sbjct: 61  LSLAATSSDDKKAACECIKSVAGSVKYNVKLAEDLPGNCGITLPFSISAGIDCSKIS 113

[Close]

BLAST of Sed0020486 vs. NCBI nr
Match: XP_022959696.1 (non-specific lipid-transfer protein 8-like [Cucurbita moschata] >KAG6593344.1 Non-specific lipid-transfer protein 8, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 152.1 bits (383), Expect = 2.9e-33
Identity = 74/117 (63.25%), Postives = 92/117 (78.63%), Query Frame = 0


Query: 1   MKSLKLVVAIVLVVVVQLVGQNSEAAITCNDVSGDLLPCVSYLVSGSGNPPSACCDGLKT 60
           M SLK+ +  ++++++    Q SEAAI+CNDV+ DL+PCVSYL+SGSG PPSACCDG K 
Sbjct: 1   MASLKVTIVCMMLLLL----QESEAAISCNDVTKDLMPCVSYLMSGSGKPPSACCDGAKA 60

Query: 61  LLGTATSVDDKKTACNCIKSAAGSINYNLKLAQELPANCGVTLPFPISADLDCSRIS 118
           L   ATS DDKK AC CIKS AGS+ YN KLA++LP NCG+TLPF ISA +DCS+IS
Sbjct: 61  LSLAATSSDDKKAACECIKSVAGSVKYNAKLAEDLPGNCGITLPFSISAGIDCSKIS 113

[Close]

BLAST of Sed0020486 vs. NCBI nr
Match: XP_023514955.1 (non-specific lipid-transfer protein 8-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 151.8 bits (382), Expect = 3.8e-33
Identity = 74/117 (63.25%), Postives = 92/117 (78.63%), Query Frame = 0


Query: 1   MKSLKLVVAIVLVVVVQLVGQNSEAAITCNDVSGDLLPCVSYLVSGSGNPPSACCDGLKT 60
           M SLK+ +A ++++++    Q SEAAI+CNDV+ DL PCVSYL+SGSG PPSACCDG K 
Sbjct: 1   MASLKVTIAFMMLLLL----QESEAAISCNDVTKDLTPCVSYLMSGSGKPPSACCDGAKA 60

Query: 61  LLGTATSVDDKKTACNCIKSAAGSINYNLKLAQELPANCGVTLPFPISADLDCSRIS 118
           L   ATS DDKK AC CIKS AG++ YN KLA++LP NCG+TLPF ISA +DCS+IS
Sbjct: 61  LSLAATSSDDKKAACQCIKSVAGNVKYNAKLAEDLPGNCGITLPFSISAGIDCSKIS 113

[Close]

BLAST of Sed0020486 vs. NCBI nr
Match: XP_038900062.1 (non-specific lipid-transfer protein 8 [Benincasa hispida])

HSP 1 Score: 150.6 bits (379), Expect = 8.4e-33
Identity = 71/109 (65.14%), Postives = 90/109 (82.57%), Query Frame = 0


Query: 9   AIVLVVVVQLVGQNSEAAITCNDVSGDLLPCVSYLVSGSGNPPSACCDGLKTLLGTATSV 68
           A++L V++ L  Q+S+AAI+CNDV+ DL+PCVSYLVSGSG PPSACCDG K L   AT+ 
Sbjct: 14  AMLLFVILFLFLQDSKAAISCNDVTKDLMPCVSYLVSGSGKPPSACCDGAKALSSAATTS 73

Query: 69  DDKKTACNCIKSAAGSINYNLKLAQELPANCGVTLPFPISADLDCSRIS 118
            DKK AC CIKSAA ++NYN KLAQ+LP+NCG++LPF ISA +DCS+I+
Sbjct: 74  ADKKAACQCIKSAASNVNYNAKLAQDLPSNCGISLPFSISAGIDCSKIN 122

[Close]

BLAST of Sed0020486 vs. NCBI nr
Match: XP_023004354.1 (non-specific lipid-transfer protein 8-like [Cucurbita maxima])

HSP 1 Score: 150.2 bits (378), Expect = 1.1e-32
Identity = 73/117 (62.39%), Postives = 93/117 (79.49%), Query Frame = 0


Query: 1   MKSLKLVVAIVLVVVVQLVGQNSEAAITCNDVSGDLLPCVSYLVSGSGNPPSACCDGLKT 60
           M SLK+ +A ++++++    Q SEAAI+CNDV+ +L+PCVSYL+SGSG PPSACCDG K 
Sbjct: 1   MASLKVTMAFMMLLLL----QESEAAISCNDVTKNLMPCVSYLMSGSGKPPSACCDGAKA 60

Query: 61  LLGTATSVDDKKTACNCIKSAAGSINYNLKLAQELPANCGVTLPFPISADLDCSRIS 118
           L   ATS DDKK AC CIKS AG++ YN KLA++LP NCG+TLPF ISA +DCS+IS
Sbjct: 61  LSLAATSSDDKKAACECIKSVAGNVKYNAKLAEDLPGNCGITLPFSISAGIDCSKIS 113

[Close]

BLAST of Sed0020486 vs. ExPASy Swiss-Prot
Match: Q9ZPW9 (Non-specific lipid-transfer protein 8 OS=Arabidopsis thaliana OX=3702 GN=LTP8 PE=3 SV=1)

HSP 1 Score: 111.3 bits (277), Expect = 7.4e-24
Identity = 54/109 (49.54%), Postives = 73/109 (66.97%), Query Frame = 0


Query: 8   VAIVLVVVVQLVGQNSEAAITCNDVSGDLLPCVSYLVSGSGNPPSACCDGLKTLLGTATS 67
           +AI+ V+ +  + + SE+AI+C+ V  DL PCVSYL SGSGNPP  CCDG+K+L    T+
Sbjct: 7   LAIISVLGIFFIPRYSESAISCSVVLQDLQPCVSYLTSGSGNPPETCCDGVKSLAAATTT 66

Query: 68  VDDKKTACNCIKSAAGSINYNLKLAQELPANCGVTLPFPISADLDCSRI 117
             DKK AC CIKS A S+    +LAQ L +NCG +LP   S  +DC+ +
Sbjct: 67  SADKKAACQCIKSVANSVTVKPELAQALASNCGASLPVDASPTVDCTTV 115

[Close]

BLAST of Sed0020486 vs. ExPASy Swiss-Prot
Match: A2ZAS9 (Non-specific lipid-transfer protein 3 OS=Oryza sativa subsp. indica OX=39946 GN=LTP110-A PE=2 SV=1)

HSP 1 Score: 105.5 bits (262), Expect = 4.1e-22
Identity = 48/112 (42.86%), Postives = 78/112 (69.64%), Query Frame = 0


Query: 7   VVAIVLVVVVQLVGQNSEAAITCNDVSGDLLPCVSYLVSGSGNPPSACCDGLKTLLGTAT 66
           +VA+V VV   +V + + AA++C DV+  + PC+SY++    +P S+CC G++TL G A+
Sbjct: 10  LVALVAVVAAAVVAERASAAVSCGDVTSSIAPCLSYVMGRESSPSSSCCSGVRTLNGKAS 69

Query: 67  SVDDKKTACNCIKSAAGSI-NYNLKLAQELPANCGVTLPFPISADLDCSRIS 118
           S  D++TAC+C+K+ A S  N N+  A  +P+ CGV++ FPIS  +DCS+I+
Sbjct: 70  SSADRRTACSCLKNMASSFRNLNMGNAASIPSKCGVSVAFPISTSVDCSKIN 121

[Close]

BLAST of Sed0020486 vs. ExPASy Swiss-Prot
Match: Q2QYL3 (Non-specific lipid-transfer protein 3 OS=Oryza sativa subsp. japonica OX=39947 GN=LTP110-A PE=2 SV=1)

HSP 1 Score: 105.5 bits (262), Expect = 4.1e-22
Identity = 48/112 (42.86%), Postives = 78/112 (69.64%), Query Frame = 0


Query: 7   VVAIVLVVVVQLVGQNSEAAITCNDVSGDLLPCVSYLVSGSGNPPSACCDGLKTLLGTAT 66
           +VA+V VV   +V + + AA++C DV+  + PC+SY++    +P S+CC G++TL G A+
Sbjct: 10  LVALVAVVAAAVVAERASAAVSCGDVTSSIAPCLSYVMGRESSPSSSCCSGVRTLNGKAS 69

Query: 67  SVDDKKTACNCIKSAAGSI-NYNLKLAQELPANCGVTLPFPISADLDCSRIS 118
           S  D++TAC+C+K+ A S  N N+  A  +P+ CGV++ FPIS  +DCS+I+
Sbjct: 70  SSADRRTACSCLKNMASSFRNLNMGNAASIPSKCGVSVAFPISTSVDCSKIN 121

[Close]

BLAST of Sed0020486 vs. ExPASy Swiss-Prot
Match: A0A158V755 (Non-specific lipid-transfer protein 2 OS=Pisum sativum OX=3888 PE=2 SV=1)

HSP 1 Score: 102.4 bits (254), Expect = 3.4e-21
Identity = 53/116 (45.69%), Postives = 77/116 (66.38%), Query Frame = 0


Query: 3   SLKLVVAIVLVVVVQLVGQNSEAAITCNDVSGDLLPCVSYL-VSGSGNPPSACCDGLKTL 62
           S+KL   + LV+ + ++   +EAA++C  VSGDL PC++YL    + +PP  CC G+K L
Sbjct: 4   SMKL-ACVALVMCMVVIAPMAEAALSCGTVSGDLAPCLTYLQAPNNASPPPPCCAGVKKL 63

Query: 63  LGTATSVDDKKTACNCIKSAAGSIN-YNLKLAQELPANCGVTLPFPISADLDCSRI 117
           LG AT+  D++ ACNC+KSAAGSI+  N   A  LP  CGV++P+ IS   +C+ I
Sbjct: 64  LGAATTTPDRQAACNCLKSAAGSISRLNTNNAAALPGKCGVSIPYKISTSTNCNTI 118

[Close]

BLAST of Sed0020486 vs. ExPASy Swiss-Prot
Match: A0A161AT60 (Non-specific lipid-transfer protein 1 OS=Pisum sativum OX=3888 PE=1 SV=1)

HSP 1 Score: 99.4 bits (246), Expect = 2.9e-20
Identity = 50/117 (42.74%), Postives = 75/117 (64.10%), Query Frame = 0


Query: 2   KSLKLVVAIVLVVVVQLVGQNSEAAITCNDVSGDLLPCVSYL-VSGSGNPPSACCDGLKT 61
           +S+KL   + LV+ + ++   +EAA++C  VS D+ PCV+YL    + +PP  CC G+K 
Sbjct: 3   RSMKL-ACVALVICMVVIAPMAEAALSCGTVSADMAPCVTYLQAPNNASPPPPCCAGVKK 62

Query: 62  LLGTATSVDDKKTACNCIKSAAGSI-NYNLKLAQELPANCGVTLPFPISADLDCSRI 117
           LL  AT+  D++ ACNC+KSAAGSI   N   A  LP  CGV++P+ IS   +C+ +
Sbjct: 63  LLAAATTTPDRQAACNCLKSAAGSIPKLNTNNAAALPGKCGVSIPYKISTSTNCNTV 118

[Close]

BLAST of Sed0020486 vs. ExPASy TrEMBL
Match: A0A6J1H5K9 (Non-specific lipid-transfer protein OS=Cucurbita moschata OX=3662 GN=LOC111460693 PE=3 SV=1)

HSP 1 Score: 152.1 bits (383), Expect = 1.4e-33
Identity = 74/117 (63.25%), Postives = 92/117 (78.63%), Query Frame = 0


Query: 1   MKSLKLVVAIVLVVVVQLVGQNSEAAITCNDVSGDLLPCVSYLVSGSGNPPSACCDGLKT 60
           M SLK+ +  ++++++    Q SEAAI+CNDV+ DL+PCVSYL+SGSG PPSACCDG K 
Sbjct: 1   MASLKVTIVCMMLLLL----QESEAAISCNDVTKDLMPCVSYLMSGSGKPPSACCDGAKA 60

Query: 61  LLGTATSVDDKKTACNCIKSAAGSINYNLKLAQELPANCGVTLPFPISADLDCSRIS 118
           L   ATS DDKK AC CIKS AGS+ YN KLA++LP NCG+TLPF ISA +DCS+IS
Sbjct: 61  LSLAATSSDDKKAACECIKSVAGSVKYNAKLAEDLPGNCGITLPFSISAGIDCSKIS 113

[Close]

BLAST of Sed0020486 vs. ExPASy TrEMBL
Match: A0A6J1KW15 (Non-specific lipid-transfer protein OS=Cucurbita maxima OX=3661 GN=LOC111497697 PE=3 SV=1)

HSP 1 Score: 150.2 bits (378), Expect = 5.3e-33
Identity = 73/117 (62.39%), Postives = 93/117 (79.49%), Query Frame = 0


Query: 1   MKSLKLVVAIVLVVVVQLVGQNSEAAITCNDVSGDLLPCVSYLVSGSGNPPSACCDGLKT 60
           M SLK+ +A ++++++    Q SEAAI+CNDV+ +L+PCVSYL+SGSG PPSACCDG K 
Sbjct: 1   MASLKVTMAFMMLLLL----QESEAAISCNDVTKNLMPCVSYLMSGSGKPPSACCDGAKA 60

Query: 61  LLGTATSVDDKKTACNCIKSAAGSINYNLKLAQELPANCGVTLPFPISADLDCSRIS 118
           L   ATS DDKK AC CIKS AG++ YN KLA++LP NCG+TLPF ISA +DCS+IS
Sbjct: 61  LSLAATSSDDKKAACECIKSVAGNVKYNAKLAEDLPGNCGITLPFSISAGIDCSKIS 113

[Close]

BLAST of Sed0020486 vs. ExPASy TrEMBL
Match: A0A1S3CEM4 (Non-specific lipid-transfer protein OS=Cucumis melo OX=3656 GN=LOC103499873 PE=3 SV=1)

HSP 1 Score: 144.4 bits (363), Expect = 2.9e-31
Identity = 70/107 (65.42%), Postives = 86/107 (80.37%), Query Frame = 0


Query: 11  VLVVVVQLVGQNSEAAITCNDVSGDLLPCVSYLVSGSGNPPSACCDGLKTLLGTATSVDD 70
           +L+ V  L+G  S+A I+C+DV+ DL+PCVSYLVSGSG PPSACCDG K L   ATS  D
Sbjct: 10  ILLFVFLLLGV-SKATISCSDVTKDLMPCVSYLVSGSGKPPSACCDGAKALSSAATSGAD 69

Query: 71  KKTACNCIKSAAGSINYNLKLAQELPANCGVTLPFPISADLDCSRIS 118
           KK AC CIKSAA ++NYN KLAQ+LP+NCG+TLPF ISA +DCS+I+
Sbjct: 70  KKAACQCIKSAASNVNYNAKLAQDLPSNCGITLPFSISAGIDCSKIN 115

[Close]

BLAST of Sed0020486 vs. ExPASy TrEMBL
Match: A0A0A0K657 (Non-specific lipid-transfer protein OS=Cucumis sativus OX=3659 GN=Csa_7G430200 PE=3 SV=1)

HSP 1 Score: 144.1 bits (362), Expect = 3.8e-31
Identity = 67/106 (63.21%), Postives = 87/106 (82.08%), Query Frame = 0


Query: 12  LVVVVQLVGQNSEAAITCNDVSGDLLPCVSYLVSGSGNPPSACCDGLKTLLGTATSVDDK 71
           +++ V L+ Q S+A I+C+DV+ DL+PCVSYL+SGSG PPSACCDG K L   ATS  DK
Sbjct: 14  VLLFVFLLLQVSKATISCSDVTKDLMPCVSYLMSGSGKPPSACCDGAKALSSAATSSADK 73

Query: 72  KTACNCIKSAAGSINYNLKLAQELPANCGVTLPFPISADLDCSRIS 118
           K AC CIKSAA ++NYN+KLAQ+LP+NCG++LPF ISA +DCS+I+
Sbjct: 74  KAACECIKSAASNVNYNVKLAQDLPSNCGISLPFSISAGIDCSKIN 119

[Close]

BLAST of Sed0020486 vs. ExPASy TrEMBL
Match: A0A5A7UYN6 (Non-specific lipid-transfer protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold459G001310 PE=3 SV=1)

HSP 1 Score: 142.5 bits (358), Expect = 1.1e-30
Identity = 69/105 (65.71%), Postives = 84/105 (80.00%), Query Frame = 0


Query: 11  VLVVVVQLVGQNSEAAITCNDVSGDLLPCVSYLVSGSGNPPSACCDGLKTLLGTATSVDD 70
           +L+ V  L+G  S+A I+C+DV+ DL+PCVSYLVSGSG PPSACCDG K L   ATS  D
Sbjct: 10  ILLFVFLLLGV-SKATISCSDVTKDLMPCVSYLVSGSGKPPSACCDGAKALSSAATSGAD 69

Query: 71  KKTACNCIKSAAGSINYNLKLAQELPANCGVTLPFPISADLDCSR 116
           KK AC CIKSAA ++NYN KLAQ+LP+NCG+TLPF ISA +DCS+
Sbjct: 70  KKAACQCIKSAASNVNYNAKLAQDLPSNCGITLPFSISAGIDCSK 113

[Close]

BLAST of Sed0020486 vs. TAIR 10
Match: AT2G18370.1 (Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein )

HSP 1 Score: 111.3 bits (277), Expect = 5.3e-25
Identity = 54/109 (49.54%), Postives = 73/109 (66.97%), Query Frame = 0


Query: 8   VAIVLVVVVQLVGQNSEAAITCNDVSGDLLPCVSYLVSGSGNPPSACCDGLKTLLGTATS 67
           +AI+ V+ +  + + SE+AI+C+ V  DL PCVSYL SGSGNPP  CCDG+K+L    T+
Sbjct: 7   LAIISVLGIFFIPRYSESAISCSVVLQDLQPCVSYLTSGSGNPPETCCDGVKSLAAATTT 66

Query: 68  VDDKKTACNCIKSAAGSINYNLKLAQELPANCGVTLPFPISADLDCSRI 117
             DKK AC CIKS A S+    +LAQ L +NCG +LP   S  +DC+ +
Sbjct: 67  SADKKAACQCIKSVANSVTVKPELAQALASNCGASLPVDASPTVDCTTV 115

[Close]

BLAST of Sed0020486 vs. TAIR 10
Match: AT5G01870.1 (Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein )

HSP 1 Score: 88.6 bits (218), Expect = 3.7e-18
Identity = 48/113 (42.48%), Postives = 67/113 (59.29%), Query Frame = 0


Query: 7   VVAIVLVVVVQLVGQNSEAAITCNDVSGDLLPCVSYLVSGSGNPPSACCDGLKTLLGTAT 66
           VV  + +++  +    SEAAI+CN V  +L PCV Y+V G G  P +CC+G++ L   AT
Sbjct: 4   VVLPLCLLLASIFAWGSEAAISCNAVQANLYPCVVYVVQG-GAIPYSCCNGIRMLSKQAT 63

Query: 67  SVDDKKTACNCIKSAAGSINYN---LKLAQELPANCGVTLPFPISADLDCSRI 117
           S  DK+  C CIKS  G ++Y+   LK A  LP  CGV LP+ I    +C+ I
Sbjct: 64  SASDKQGVCRCIKSVVGRVSYSSIYLKKAAALPGKCGVKLPYKIDPSTNCNSI 115

[Close]

BLAST of Sed0020486 vs. TAIR 10
Match: AT3G08770.1 (lipid transfer protein 6 )

HSP 1 Score: 86.3 bits (212), Expect = 1.8e-17
Identity = 50/119 (42.02%), Postives = 68/119 (57.14%), Query Frame = 0


Query: 1   MKSLKLVVAIVLVVVVQLVGQNSEAAITCNDVSGDLLPCVSYLVSGSGNPPSACCDGLKT 60
           M+SL L V +VL +         EAA++CN V  DL PC+SY+  G G  P+ CC+GL T
Sbjct: 1   MRSLLLAVCLVLAL------HCGEAAVSCNTVIADLYPCLSYVTQG-GPVPTLCCNGLTT 60

Query: 61  LLGTATSVDDKKTACNCIKSAAGSINYN---LKLAQELPANCGVTLPFPISADLDCSRI 117
           L   A +  D++  C CIKSA G +  +   ++ A ELP+ CGV LP+  S   DC  I
Sbjct: 61  LKSQAQTSVDRQGVCRCIKSAIGGLTLSPRTIQNALELPSKCGVDLPYKFSPSTDCDSI 112

[Close]

BLAST of Sed0020486 vs. TAIR 10
Match: AT5G59320.1 (lipid transfer protein 3 )

HSP 1 Score: 86.3 bits (212), Expect = 1.8e-17
Identity = 49/115 (42.61%), Postives = 69/115 (60.00%), Query Frame = 0


Query: 3   SLKLVVAIVLVVVVQLVGQNSEAAITCNDVSGDLLPCVSYLVSGSGNPPSACCDGLKTLL 62
           +L+    +VL V +     + +AAI+C  V+G L PC +YL  G   PPS CC G+KTL 
Sbjct: 4   ALRFFTCLVLTVCIV---ASVDAAISCGTVAGSLAPCATYLSKGGLVPPS-CCAGVKTLN 63

Query: 63  GTATSVDDKKTACNCIKSAAGSIN-YNLKLAQELPANCGVTLPFPISADLDCSRI 117
             A +  D++ AC CI+S A SI+  N  LA  LP  CGV++P+PIS   +C+ I
Sbjct: 64  SMAKTTPDRQQACRCIQSTAKSISGLNPSLASGLPGKCGVSIPYPISMSTNCNNI 114

[Close]

BLAST of Sed0020486 vs. TAIR 10
Match: AT3G08770.2 (lipid transfer protein 6 )

HSP 1 Score: 84.7 bits (208), Expect = 5.3e-17
Identity = 49/116 (42.24%), Postives = 67/116 (57.76%), Query Frame = 0


Query: 1   MKSLKLVVAIVLVVVVQLVGQNSEAAITCNDVSGDLLPCVSYLVSGSGNPPSACCDGLKT 60
           M+SL L V +VL +         EAA++CN V  DL PC+SY+  G G  P+ CC+GL T
Sbjct: 1   MRSLLLAVCLVLAL------HCGEAAVSCNTVIADLYPCLSYVTQG-GPVPTLCCNGLTT 60

Query: 61  LLGTATSVDDKKTACNCIKSAAGSINYN---LKLAQELPANCGVTLPFPISADLDC 114
           L   A +  D++  C CIKSA G +  +   ++ A ELP+ CGV LP+  S   DC
Sbjct: 61  LKSQAQTSVDRQGVCRCIKSAIGGLTLSPRTIQNALELPSKCGVDLPYKFSPSTDC 109

The following BLAST results are available for this feature:

BLAST of Sed0020486 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7025691.1	1.7e-33	63.25	Non-specific lipid-transfer protein 8 [Cucurbita argyrosperma subsp. argyrosperm...	[more]
XP_022959696.1	2.9e-33	63.25	non-specific lipid-transfer protein 8-like [Cucurbita moschata] >KAG6593344.1 No...	[more]
XP_023514955.1	3.8e-33	63.25	non-specific lipid-transfer protein 8-like [Cucurbita pepo subsp. pepo]	[more]
XP_038900062.1	8.4e-33	65.14	non-specific lipid-transfer protein 8 [Benincasa hispida]	[more]
XP_023004354.1	1.1e-32	62.39	non-specific lipid-transfer protein 8-like [Cucurbita maxima]	[more]

BLAST of Sed0020486 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9ZPW9	7.4e-24	49.54	Non-specific lipid-transfer protein 8 OS=Arabidopsis thaliana OX=3702 GN=LTP8 PE...	[more]
A2ZAS9	4.1e-22	42.86	Non-specific lipid-transfer protein 3 OS=Oryza sativa subsp. indica OX=39946 GN=...	[more]
Q2QYL3	4.1e-22	42.86	Non-specific lipid-transfer protein 3 OS=Oryza sativa subsp. japonica OX=39947 G...	[more]
A0A158V755	3.4e-21	45.69	Non-specific lipid-transfer protein 2 OS=Pisum sativum OX=3888 PE=2 SV=1	[more]
A0A161AT60	2.9e-20	42.74	Non-specific lipid-transfer protein 1 OS=Pisum sativum OX=3888 PE=1 SV=1	[more]

BLAST of Sed0020486 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1H5K9	1.4e-33	63.25	Non-specific lipid-transfer protein OS=Cucurbita moschata OX=3662 GN=LOC11146069...	[more]
A0A6J1KW15	5.3e-33	62.39	Non-specific lipid-transfer protein OS=Cucurbita maxima OX=3661 GN=LOC111497697 ...	[more]
A0A1S3CEM4	2.9e-31	65.42	Non-specific lipid-transfer protein OS=Cucumis melo OX=3656 GN=LOC103499873 PE=3...	[more]
A0A0A0K657	3.8e-31	63.21	Non-specific lipid-transfer protein OS=Cucumis sativus OX=3659 GN=Csa_7G430200 P...	[more]
A0A5A7UYN6	1.1e-30	65.71	Non-specific lipid-transfer protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5...	[more]

BLAST of Sed0020486 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G18370.1	5.3e-25	49.54	Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamil...	[more]
AT5G01870.1	3.7e-18	42.48	Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamil...	[more]
AT3G08770.1	1.8e-17	42.02	lipid transfer protein 6	[more]
AT5G59320.1	1.8e-17	42.61	lipid transfer protein 3	[more]
AT3G08770.2	5.3e-17	42.24	lipid transfer protein 6	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000528	Plant non-specific lipid-transfer protein/Par allergen	PRINTS	PR00382	LIPIDTRNSFER	coord: 104..115 score: 45.51 coord: 49..63 score: 40.72 coord: 28..44 score: 40.45 coord: 70..85 score: 52.88 coord: 86..103 score: 35.9
IPR000528	Plant non-specific lipid-transfer protein/Par allergen	PANTHER	PTHR33076	FAMILY NOT NAMED	coord: 6..116
IPR000528	Plant non-specific lipid-transfer protein/Par allergen	PROSITE	PS00597	PLANT_LTP	coord: 95..116
IPR016140	Bifunctional inhibitor/plant lipid transfer protein/seed storage helical domain	SMART	SM00499	aai_6	coord: 29..113 e-value: 5.9E-10 score: 49.1
IPR016140	Bifunctional inhibitor/plant lipid transfer protein/seed storage helical domain	PFAM	PF00234	Tryp_alpha_amyl	coord: 29..105 e-value: 1.9E-9 score: 37.8
IPR036312	Bifunctional inhibitor/plant lipid transfer protein/seed storage helical domain superfamily	GENE3D	1.10.110.10		coord: 26..117 e-value: 2.2E-28 score: 100.5
IPR036312	Bifunctional inhibitor/plant lipid transfer protein/seed storage helical domain superfamily	SUPERFAMILY	47699	Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin	coord: 26..116
None	No IPR available	PANTHER	PTHR33076:SF62	NON-SPECIFIC LIPID-TRANSFER PROTEIN 8	coord: 6..116
None	No IPR available	CDD	cd01960	nsLTP1	coord: 27..114 e-value: 3.70775E-32 score: 106.665

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0020486.1	Sed0020486.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006869	lipid transport
molecular_function	GO:0008289	lipid binding