Sed0020474 (gene) Chayote v1

Overview
NameSed0020474
Typegene
OrganismSechium edule (Chayote v1)
DescriptionSOSS complex subunit B homolog
LocationLG04: 47634948 .. 47637893 (-)
RNA-Seq ExpressionSed0020474
SyntenySed0020474
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
GAAATTTTAAAGGGAGAAAATTTGAACCCTAGGCCTGACTCTTCTTCTGTTTGATTTCTCTGCTGAAGCTTGACACCGCCATCGCCAACCCTCGTTTTTCTTGGAGGTCTGCCCCAATCTATTATATTCTATTCTCTTTTATTATTATTATTATTATTATTATTTGTCTTTCATTGAACCAAATTACATAATTGCGAAAATGATTTCAATTCCGTTCTGATTCGAAATCATTCTAACAGAGGGTGGAACCACTGTCATTTGTAGATGCATCTAATCTAATCGAATCAAATCTTAGTCCTTACTCATGGAGTTTGTTTTTTGTTTTGGATTTCTTTTATGTGGTTGTATTGTATATGGTGCTACGCTAATTTGGGGGAATTGCACAAAGTGGATAGCCATTTTGATTTGGCATTCCAAAGGTAGGGGATAACGGACATTGAATGTGTGGCCATCATTTTTCCTCCATTGGCTTAATCTCTGAAAAGAAGAAGTTGGGTAGAGTATAGACAACTTCATTACCTTGGTTGCTCATTATTATTAACCTACGTTATTGGTTTTTTCAAAAGAATATGCAAGACCCAACTACTATATATAAATGGTTGTCATTTAATATTTTTTTAATGAACAAATTAGTTAGTTGAGTAATATAATATAGACTAAAAGTGAGTATTATTGAGCAAATGGAAAGCCAACTTTCCGGCTCGAGTATTGAAGAGGCCCGTTTATTTTTCCATTGTCAATAGCAAAGTTTTCTAGTGCATTGAAGAGGCAAGTTTTTTTTTTTGTCTCTTAGTCCATGGTTAATATCAAATTTTTAATGATGTATATAAGTACATTGAAGAGACAAGTTTATATATATATTTTTTTGAAAGATAATCTATGTATATGAATTCAGTGAAGAGGCAAGTTTAGATGAATCCATTGAAGAGGCAAATTTATTTGAGTCCATGGTCAATACCAATTTCTTTGACGAGGTATATGAGTTGCTTAATGTCGTTTAATTACGTAGTTTCTAAATGTCGTTTGCAAGTTTGAATAAAACGAAAATAAGTAGAAAAGGTTGGTTTTCTTTCCTTATTTATTTGAAAGAAGTGAAAATGGATAATTTTTTTAATTATGTAGTTGCAAATATTTGCAAGTTTCAATGAAAGTGGTAATAAATAAAGGTTGGTTATATTGTAAATTATATAGTTGTAAATGTTTGCAAGTTTGAAATGGTCAGCTTCACAATACAATTTACTAAACATTGAATGGGTTGCATGTTTGAAAATATTCATACAACTATGTTTTTTTTAAAACGCCAATAATTCTCTTATTTAAGTAGTTTATATACAAGTTCAATATAATTTGAATTCATATAAATGTCTTTTCTTCTTCTTTTTTTTTTTAATGCTAGAGTCTACAAAATTTTGTGTGTATTCTTTTAGTTTTTTGGGAAAGAAATGCATTTTTTTTTATATTTTGCATGGCTAAGAGGAATCCTGAGTCATGATATAAATGTCTTCTCATGATTAATAAATCATATATTTGAATTCTACTTCATTTAATGTGTTTCTCTATTGCCTCTTGATCAGTGGGCAAACAAACTCATAGGATGAATGTTATCTTTAGTTTAAGTGTTGGCATTAATGTATTCACGTTGTTGACACAAATATCTGTCGCCCAACGTCACAATAATAAATGATTTCAAAAAAAAAAAAACGTCACAATAATAATAATAATATTATTATTATTATTTTTACATCTGGAGTTCAACATAAAAAATAATTAGCAATAAATAGAATTATTTATATCTTTTATATATTATTTTGAGGTCTCTACTTTTTCCGATATTGAATCCTTGACACTAATCCTATTGTTTTTGGATGTCAAGAGAATTTATAATAAATTAATTTCTACGCAAATCGCATTATATGTTGAGCACACAATCTTTTGGTTTCTTAATGTACTTAGTCTACTCGTGGTGGCTCAATTAATATTAGACTGTATCATAAACACAAAGGTTGAAGTTTAAAACTAAAGCTTAAAGAATATCCCATTTTGATCTGATTTTCCCCTTCTTTTTTTGGTAATTGGGTTCCATGGATCAATAGCCTCACAATTTCAGATCATATCAGATATTTGAAAATTGCATCACTATATCCTGTTTTGAAGCATTAGTTGATTGAATATTGTTTGGTTGTTTGGTTGTTTGTGAGTTTAAAAGGTAGATATCTCTCAAGGACTTAGTACCAGCAGCTCAGAATAATGTAAATGCAGAATTCATAGTTTTGGAGAAAGGCAATGCAACCATGGAAGGAGAAAAAAAAGTATGCCAATCACTGGTGGCCGACCCAACAGCTGCCGTTCACTTCCAACTATGGGGAGACGAGTGCGACGTCGTCGAGCCAAGCGACATTATACGCTTGACCAACGGGATATTCTCTTACAGCCGAAACAGTAATCTGGTGCTGAGGGCAGGGAAGAGAGGGAAGATAGAGAAGGTGGGAGAGTTCAACATGGTGTTTGTAGAGACACCGAATATGAGCGAGATCCATTGGGTTCCCGACACGACGAACTTGAAGAAGTATGTGAAGGGATCTGTTCTATCTCCCTATTCTCGCATTTTCCCGCCGATCCATTGATGTCATTGTGGTTGTAGACCAGGCCTGAGTGAATGTGTTTTTTTTCAAATACAGCAAAGAGAGGTCAAGAAAAATGTAGGATTTTGGAGATGGAATTGAAATTATGATTTACCAATATTTTAAATGGAAATGGTGTGTATTGCACAACTTTTTTTACAAATTAGGAAGCAAAACAAGAGGGATAAAACACAATCATTTGTGGTTCACAATAATCAAACATATTGCAAACTAAGGCAAAGAAACCATGATAGAAATAAGCGCTGAGCTTTTGGCTGGGATTTGAGCTTTACCTGCCATTTACAAGATGTGACTGCAACCAAAC

mRNA sequence

GAAATTTTAAAGGGAGAAAATTTGAACCCTAGGCCTGACTCTTCTTCTGTTTGATTTCTCTGCTGAAGCTTGACACCGCCATCGCCAACCCTCGTTTTTCTTGGAGGTAGATATCTCTCAAGGACTTAGTACCAGCAGCTCAGAATAATGTAAATGCAGAATTCATAGTTTTGGAGAAAGGCAATGCAACCATGGAAGGAGAAAAAAAAGTATGCCAATCACTGGTGGCCGACCCAACAGCTGCCGTTCACTTCCAACTATGGGGAGACGAGTGCGACGTCGTCGAGCCAAGCGACATTATACGCTTGACCAACGGGATATTCTCTTACAGCCGAAACAGTAATCTGGTGCTGAGGGCAGGGAAGAGAGGGAAGATAGAGAAGGTGGGAGAGTTCAACATGGTGTTTGTAGAGACACCGAATATGAGCGAGATCCATTGGGTTCCCGACACGACGAACTTGAAGAAGTATGTGAAGGGATCTGTTCTATCTCCCTATTCTCGCATTTTCCCGCCGATCCATTGATGTCATTGTGGTTGTAGACCAGGCCTGAGTGAATGTGTTTTTTTTCAAATACAGCAAAGAGAGGTCAAGAAAAATGTAGGATTTTGGAGATGGAATTGAAATTATGATTTACCAATATTTTAAATGGAAATGGTGTGTATTGCACAACTTTTTTTACAAATTAGGAAGCAAAACAAGAGGGATAAAACACAATCATTTGTGGTTCACAATAATCAAACATATTGCAAACTAAGGCAAAGAAACCATGATAGAAATAAGCGCTGAGCTTTTGGCTGGGATTTGAGCTTTACCTGCCATTTACAAGATGTGACTGCAACCAAAC

Coding sequence (CDS)

ATGGAAGGAGAAAAAAAAGTATGCCAATCACTGGTGGCCGACCCAACAGCTGCCGTTCACTTCCAACTATGGGGAGACGAGTGCGACGTCGTCGAGCCAAGCGACATTATACGCTTGACCAACGGGATATTCTCTTACAGCCGAAACAGTAATCTGGTGCTGAGGGCAGGGAAGAGAGGGAAGATAGAGAAGGTGGGAGAGTTCAACATGGTGTTTGTAGAGACACCGAATATGAGCGAGATCCATTGGGTTCCCGACACGACGAACTTGAAGAAGTATGTGAAGGGATCTGTTCTATCTCCCTATTCTCGCATTTTCCCGCCGATCCATTGA

Protein sequence

MEGEKKVCQSLVADPTAAVHFQLWGDECDVVEPSDIIRLTNGIFSYSRNSNLVLRAGKRGKIEKVGEFNMVFVETPNMSEIHWVPDTTNLKKYVKGSVLSPYSRIFPPIH
Homology
[Close]
BLAST of Sed0020474 vs. NCBI nr
Match: XP_022961520.1 (SOSS complex subunit B homolog [Cucurbita moschata] >XP_022961521.1 SOSS complex subunit B homolog [Cucurbita moschata] >KAG6590445.1 SOSS complex subunit B-like protein, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 214.9 bits (546), Expect = 3.4e-52
Identity = 101/109 (92.66%), Postives = 104/109 (95.41%), Query Frame = 0 

Query: 1   MEGEKKVCQSLVADPTAAVHFQLWGDECDVVEPSDIIRLTNGIFSYSRNSNLVLRAGKRG 60
           MEG+ K CQSLVAD TAAVHFQLWG+ECDVVEPSDI+RLTNGIFSYSRNSNLVLRAGKRG
Sbjct: 30  MEGQNKTCQSLVADETAAVHFQLWGEECDVVEPSDILRLTNGIFSYSRNSNLVLRAGKRG 89

Query: 61  KIEKVGEFNMVFVETPNMSEIHWVPDTTNLKKYVKGSVLSPYSRIFPPI 110
           KIEKVGEFNMVFVETPNMSEIHWVPDTTN KKYVK SVLSPYSRIFPPI
Sbjct: 90  KIEKVGEFNMVFVETPNMSEIHWVPDTTNSKKYVKESVLSPYSRIFPPI 138

[Close]
BLAST of Sed0020474 vs. NCBI nr
Match: XP_038878334.1 (SOSS complex subunit B homolog [Benincasa hispida] >XP_038878335.1 SOSS complex subunit B homolog [Benincasa hispida] >XP_038878336.1 SOSS complex subunit B homolog [Benincasa hispida] >XP_038878337.1 SOSS complex subunit B homolog [Benincasa hispida])

HSP 1 Score: 211.8 bits (538), Expect = 2.9e-51
Identity = 100/109 (91.74%), Postives = 102/109 (93.58%), Query Frame = 0 

Query: 1   MEGEKKVCQSLVADPTAAVHFQLWGDECDVVEPSDIIRLTNGIFSYSRNSNLVLRAGKRG 60
           MEG+ K CQSLVAD TAAVHFQLWGDECDVVEPSDIIRLTNGIFSYSRN+NLVLRAGKRG
Sbjct: 30  MEGQNKACQSLVADETAAVHFQLWGDECDVVEPSDIIRLTNGIFSYSRNNNLVLRAGKRG 89

Query: 61  KIEKVGEFNMVFVETPNMSEIHWVPDTTNLKKYVKGSVLSPYSRIFPPI 110
           KIEKVGEF MVFVETPNMSEIHWVPDTTN  KYVK SVLSPYSRIFPPI
Sbjct: 90  KIEKVGEFKMVFVETPNMSEIHWVPDTTNSNKYVKESVLSPYSRIFPPI 138

[Close]
BLAST of Sed0020474 vs. NCBI nr
Match: XP_023515959.1 (SOSS complex subunit B homolog [Cucurbita pepo subsp. pepo])

HSP 1 Score: 211.8 bits (538), Expect = 2.9e-51
Identity = 98/109 (89.91%), Postives = 104/109 (95.41%), Query Frame = 0 

Query: 1   MEGEKKVCQSLVADPTAAVHFQLWGDECDVVEPSDIIRLTNGIFSYSRNSNLVLRAGKRG 60
           +EG+ K CQSLVAD TAAVHFQLWG+ECDVVEPSDI+RLTNGIFSYSRN+NLVLRAGKRG
Sbjct: 30  IEGQNKTCQSLVADETAAVHFQLWGEECDVVEPSDILRLTNGIFSYSRNNNLVLRAGKRG 89

Query: 61  KIEKVGEFNMVFVETPNMSEIHWVPDTTNLKKYVKGSVLSPYSRIFPPI 110
           K+EKVGEFNMVFVETPNMSEIHWVPDTTN KKYVK SVLSPYSRIFPPI
Sbjct: 90  KVEKVGEFNMVFVETPNMSEIHWVPDTTNSKKYVKESVLSPYSRIFPPI 138

[Close]
BLAST of Sed0020474 vs. NCBI nr
Match: XP_004135609.1 (SOSS complex subunit B homolog [Cucumis sativus] >KGN66060.1 hypothetical protein Csa_007591 [Cucumis sativus])

HSP 1 Score: 211.1 bits (536), Expect = 4.9e-51
Identity = 100/109 (91.74%), Postives = 102/109 (93.58%), Query Frame = 0 

Query: 1   MEGEKKVCQSLVADPTAAVHFQLWGDECDVVEPSDIIRLTNGIFSYSRNSNLVLRAGKRG 60
           MEG+ KVCQSLVAD TAAVHFQLWGDECDVVEPSDIIRLTNGIFSYSRN+NLVLRAGKRG
Sbjct: 30  MEGQNKVCQSLVADETAAVHFQLWGDECDVVEPSDIIRLTNGIFSYSRNNNLVLRAGKRG 89

Query: 61  KIEKVGEFNMVFVETPNMSEIHWVPDTTNLKKYVKGSVLSPYSRIFPPI 110
           KIEKVGEF MVFVETPNMSEIHWVPDT N  KYVK SVLSPYSRIFPPI
Sbjct: 90  KIEKVGEFKMVFVETPNMSEIHWVPDTINSNKYVKESVLSPYSRIFPPI 138

[Close]
BLAST of Sed0020474 vs. NCBI nr
Match: XP_008450623.1 (PREDICTED: SOSS complex subunit B homolog [Cucumis melo] >XP_008450625.1 PREDICTED: SOSS complex subunit B homolog [Cucumis melo] >KAA0050905.1 SOSS complex subunit B-like protein [Cucumis melo var. makuwa] >TYK10256.1 SOSS complex subunit B-like protein [Cucumis melo var. makuwa])

HSP 1 Score: 211.1 bits (536), Expect = 4.9e-51
Identity = 100/109 (91.74%), Postives = 102/109 (93.58%), Query Frame = 0 

Query: 1   MEGEKKVCQSLVADPTAAVHFQLWGDECDVVEPSDIIRLTNGIFSYSRNSNLVLRAGKRG 60
           MEG+ KVCQSLVAD TAAVHFQLWGDECDVVEPSDIIRLTNGIFSYSRN+NLVLRAGKRG
Sbjct: 31  MEGQNKVCQSLVADETAAVHFQLWGDECDVVEPSDIIRLTNGIFSYSRNNNLVLRAGKRG 90

Query: 61  KIEKVGEFNMVFVETPNMSEIHWVPDTTNLKKYVKGSVLSPYSRIFPPI 110
           KIEKVGEF MVFVETPNMSEIHWVPDT N  KYVK SVLSPYSRIFPPI
Sbjct: 91  KIEKVGEFKMVFVETPNMSEIHWVPDTINSNKYVKESVLSPYSRIFPPI 139

[Close]
BLAST of Sed0020474 vs. ExPASy Swiss-Prot
Match: Q54X41 (SOSS complex subunit B homolog OS=Dictyostelium discoideum OX=44689 GN=DDB_G0279223 PE=3 SV=1)

HSP 1 Score: 67.8 bits (164), Expect = 8.8e-11
Identity = 41/106 (38.68%), Postives = 55/106 (51.89%), Query Frame = 0 

Query: 4   EKKVCQSLVADPTAAVHFQLWGDECDVVEPSDIIRLTNGIFSYSRNSNLVLRAGKRGKIE 63
           E  + Q LVAD TA+++  +W    + ++P DI+RL  G +S      L L  GK G IE
Sbjct: 33  EGTIYQVLVADSTASINMTVWDALGEQIQPGDILRLKGG-YSNIYIELLNLYVGKTGIIE 92

Query: 64  KVGEFNMVFVETPNMSEIHW--VPDTTNLKKYVKGSVLSPYSRIFP 108
           K+GEF   FVE PN+S   W    D  N K  V     SP+ +  P
Sbjct: 93  KIGEFTFPFVEAPNLSSTLWNVHQDPNNPKNMVATPKPSPHKQQQP 137

[Close]
BLAST of Sed0020474 vs. ExPASy Swiss-Prot
Match: A6QLK2 (SOSS complex subunit B1 OS=Bos taurus OX=9913 GN=NABP2 PE=2 SV=1)

HSP 1 Score: 65.5 bits (158), Expect = 4.4e-10
Identity = 32/77 (41.56%), Postives = 48/77 (62.34%), Query Frame = 0 

Query: 4   EKKVCQSLVADPTAAVHFQLWGDECDVVEPSDIIRLTNGIFSYSRNSNLVLRAGKRGKIE 63
           E + C+  VAD T +++  +W D  ++++P DIIRLT G  S  +   L L  G+ G ++
Sbjct: 37  EVRTCK--VADKTGSINISVWDDVGNLIQPGDIIRLTKGYASVFKGC-LTLYTGRGGDLQ 96

Query: 64  KVGEFNMVFVETPNMSE 81
           K+GEF MV+ E PN SE
Sbjct: 97  KIGEFCMVYSEVPNFSE 110

[Close]
BLAST of Sed0020474 vs. ExPASy Swiss-Prot
Match: Q9BQ15 (SOSS complex subunit B1 OS=Homo sapiens OX=9606 GN=NABP2 PE=1 SV=1)

HSP 1 Score: 65.5 bits (158), Expect = 4.4e-10
Identity = 32/77 (41.56%), Postives = 48/77 (62.34%), Query Frame = 0 

Query: 4   EKKVCQSLVADPTAAVHFQLWGDECDVVEPSDIIRLTNGIFSYSRNSNLVLRAGKRGKIE 63
           E + C+  VAD T +++  +W D  ++++P DIIRLT G  S  +   L L  G+ G ++
Sbjct: 37  EVRTCK--VADKTGSINISVWDDVGNLIQPGDIIRLTKGYASVFKGC-LTLYTGRGGDLQ 96

Query: 64  KVGEFNMVFVETPNMSE 81
           K+GEF MV+ E PN SE
Sbjct: 97  KIGEFCMVYSEVPNFSE 110

[Close]
BLAST of Sed0020474 vs. ExPASy Swiss-Prot
Match: Q8R2Y9 (SOSS complex subunit B1 OS=Mus musculus OX=10090 GN=Nabp2 PE=1 SV=1)

HSP 1 Score: 65.5 bits (158), Expect = 4.4e-10
Identity = 32/77 (41.56%), Postives = 48/77 (62.34%), Query Frame = 0 

Query: 4   EKKVCQSLVADPTAAVHFQLWGDECDVVEPSDIIRLTNGIFSYSRNSNLVLRAGKRGKIE 63
           E + C+  VAD T +++  +W D  ++++P DIIRLT G  S  +   L L  G+ G ++
Sbjct: 37  EVRTCK--VADKTGSINISVWDDVGNLIQPGDIIRLTKGYASVFKGC-LTLYTGRGGDLQ 96

Query: 64  KVGEFNMVFVETPNMSE 81
           K+GEF MV+ E PN SE
Sbjct: 97  KIGEFCMVYSEVPNFSE 110

[Close]
BLAST of Sed0020474 vs. ExPASy Swiss-Prot
Match: Q3SWT1 (SOSS complex subunit B1 OS=Rattus norvegicus OX=10116 GN=Nabp2 PE=2 SV=1)

HSP 1 Score: 65.5 bits (158), Expect = 4.4e-10
Identity = 32/77 (41.56%), Postives = 48/77 (62.34%), Query Frame = 0 

Query: 4   EKKVCQSLVADPTAAVHFQLWGDECDVVEPSDIIRLTNGIFSYSRNSNLVLRAGKRGKIE 63
           E + C+  VAD T +++  +W D  ++++P DIIRLT G  S  +   L L  G+ G ++
Sbjct: 37  EVRTCK--VADKTGSINISVWDDVGNLIQPGDIIRLTKGYASVFKGC-LTLYTGRGGDLQ 96

Query: 64  KVGEFNMVFVETPNMSE 81
           K+GEF MV+ E PN SE
Sbjct: 97  KIGEFCMVYSEVPNFSE 110

[Close]
BLAST of Sed0020474 vs. ExPASy TrEMBL
Match: A0A6J1HAL0 (SOSS complex subunit B homolog OS=Cucurbita moschata OX=3662 GN=LOC111462072 PE=4 SV=1)

HSP 1 Score: 214.9 bits (546), Expect = 1.7e-52
Identity = 101/109 (92.66%), Postives = 104/109 (95.41%), Query Frame = 0 

Query: 1   MEGEKKVCQSLVADPTAAVHFQLWGDECDVVEPSDIIRLTNGIFSYSRNSNLVLRAGKRG 60
           MEG+ K CQSLVAD TAAVHFQLWG+ECDVVEPSDI+RLTNGIFSYSRNSNLVLRAGKRG
Sbjct: 30  MEGQNKTCQSLVADETAAVHFQLWGEECDVVEPSDILRLTNGIFSYSRNSNLVLRAGKRG 89

Query: 61  KIEKVGEFNMVFVETPNMSEIHWVPDTTNLKKYVKGSVLSPYSRIFPPI 110
           KIEKVGEFNMVFVETPNMSEIHWVPDTTN KKYVK SVLSPYSRIFPPI
Sbjct: 90  KIEKVGEFNMVFVETPNMSEIHWVPDTTNSKKYVKESVLSPYSRIFPPI 138

[Close]
BLAST of Sed0020474 vs. ExPASy TrEMBL
Match: A0A1S3BPN4 (SOSS complex subunit B homolog OS=Cucumis melo OX=3656 GN=LOC103492156 PE=4 SV=1)

HSP 1 Score: 211.1 bits (536), Expect = 2.4e-51
Identity = 100/109 (91.74%), Postives = 102/109 (93.58%), Query Frame = 0 

Query: 1   MEGEKKVCQSLVADPTAAVHFQLWGDECDVVEPSDIIRLTNGIFSYSRNSNLVLRAGKRG 60
           MEG+ KVCQSLVAD TAAVHFQLWGDECDVVEPSDIIRLTNGIFSYSRN+NLVLRAGKRG
Sbjct: 31  MEGQNKVCQSLVADETAAVHFQLWGDECDVVEPSDIIRLTNGIFSYSRNNNLVLRAGKRG 90

Query: 61  KIEKVGEFNMVFVETPNMSEIHWVPDTTNLKKYVKGSVLSPYSRIFPPI 110
           KIEKVGEF MVFVETPNMSEIHWVPDT N  KYVK SVLSPYSRIFPPI
Sbjct: 91  KIEKVGEFKMVFVETPNMSEIHWVPDTINSNKYVKESVLSPYSRIFPPI 139

[Close]
BLAST of Sed0020474 vs. ExPASy TrEMBL
Match: A0A5D3CIR3 (SOSS complex subunit B-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold16G004040 PE=4 SV=1)

HSP 1 Score: 211.1 bits (536), Expect = 2.4e-51
Identity = 100/109 (91.74%), Postives = 102/109 (93.58%), Query Frame = 0 

Query: 1   MEGEKKVCQSLVADPTAAVHFQLWGDECDVVEPSDIIRLTNGIFSYSRNSNLVLRAGKRG 60
           MEG+ KVCQSLVAD TAAVHFQLWGDECDVVEPSDIIRLTNGIFSYSRN+NLVLRAGKRG
Sbjct: 31  MEGQNKVCQSLVADETAAVHFQLWGDECDVVEPSDIIRLTNGIFSYSRNNNLVLRAGKRG 90

Query: 61  KIEKVGEFNMVFVETPNMSEIHWVPDTTNLKKYVKGSVLSPYSRIFPPI 110
           KIEKVGEF MVFVETPNMSEIHWVPDT N  KYVK SVLSPYSRIFPPI
Sbjct: 91  KIEKVGEFKMVFVETPNMSEIHWVPDTINSNKYVKESVLSPYSRIFPPI 139

[Close]
BLAST of Sed0020474 vs. ExPASy TrEMBL
Match: A0A0A0LW03 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G569370 PE=4 SV=1)

HSP 1 Score: 211.1 bits (536), Expect = 2.4e-51
Identity = 100/109 (91.74%), Postives = 102/109 (93.58%), Query Frame = 0 

Query: 1   MEGEKKVCQSLVADPTAAVHFQLWGDECDVVEPSDIIRLTNGIFSYSRNSNLVLRAGKRG 60
           MEG+ KVCQSLVAD TAAVHFQLWGDECDVVEPSDIIRLTNGIFSYSRN+NLVLRAGKRG
Sbjct: 30  MEGQNKVCQSLVADETAAVHFQLWGDECDVVEPSDIIRLTNGIFSYSRNNNLVLRAGKRG 89

Query: 61  KIEKVGEFNMVFVETPNMSEIHWVPDTTNLKKYVKGSVLSPYSRIFPPI 110
           KIEKVGEF MVFVETPNMSEIHWVPDT N  KYVK SVLSPYSRIFPPI
Sbjct: 90  KIEKVGEFKMVFVETPNMSEIHWVPDTINSNKYVKESVLSPYSRIFPPI 138

[Close]
BLAST of Sed0020474 vs. ExPASy TrEMBL
Match: A0A6J1HZ66 (SOSS complex subunit B homolog OS=Cucurbita maxima OX=3661 GN=LOC111467936 PE=4 SV=1)

HSP 1 Score: 207.6 bits (527), Expect = 2.6e-50
Identity = 96/109 (88.07%), Postives = 103/109 (94.50%), Query Frame = 0 

Query: 1   MEGEKKVCQSLVADPTAAVHFQLWGDECDVVEPSDIIRLTNGIFSYSRNSNLVLRAGKRG 60
           M+G+ K CQSLVAD TAAVHFQLWG+ECDVVEPSDI+RL NGIFSYSRN+NLVLRAGKRG
Sbjct: 30  MDGQNKTCQSLVADETAAVHFQLWGEECDVVEPSDILRLMNGIFSYSRNNNLVLRAGKRG 89

Query: 61  KIEKVGEFNMVFVETPNMSEIHWVPDTTNLKKYVKGSVLSPYSRIFPPI 110
           KIEKVGEFNMVFVETPNMSEIHWVPDT+N KKYVK SV+SPYSRIFPPI
Sbjct: 90  KIEKVGEFNMVFVETPNMSEIHWVPDTSNSKKYVKESVVSPYSRIFPPI 138

[Close]
BLAST of Sed0020474 vs. TAIR 10
Match: AT5G63690.1 (Nucleic acid-binding, OB-fold-like protein )

HSP 1 Score: 160.2 bits (404), Expect = 9.3e-40
Identity = 70/105 (66.67%), Postives = 84/105 (80.00%), Query Frame = 0 

Query: 5   KKVCQSLVADPTAAVHFQLWGDECDVVEPSDIIRLTNGIFSYSRNSNLVLRAGKRGKIEK 64
           K  C +L AD TAAVH QLWGDECD  E  DI++LTNGIFSY RNS L+LRAGKRGK+EK
Sbjct: 34  KNYCIALAADETAAVHIQLWGDECDAFEAGDIVKLTNGIFSYVRNSGLILRAGKRGKMEK 93

Query: 65  VGEFNMVFVETPNMSEIHWVPDTTNLKKYVKGSVLSPYSRIFPPI 110
           +GEF + FVETPN+SEI W+PD  N K+Y++  V+S YSRIFPP+
Sbjct: 94  MGEFTVAFVETPNISEIQWIPDPENPKRYIQSGVVSAYSRIFPPL 138

The following BLAST results are available for this feature:
BLAST of Sed0020474 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022961520.13.4e-5292.66SOSS complex subunit B homolog [Cucurbita moschata] >XP_022961521.1 SOSS complex... [more]
XP_038878334.12.9e-5191.74SOSS complex subunit B homolog [Benincasa hispida] >XP_038878335.1 SOSS complex ... [more]
XP_023515959.12.9e-5189.91SOSS complex subunit B homolog [Cucurbita pepo subsp. pepo][more]
XP_004135609.14.9e-5191.74SOSS complex subunit B homolog [Cucumis sativus] >KGN66060.1 hypothetical protei... [more]
XP_008450623.14.9e-5191.74PREDICTED: SOSS complex subunit B homolog [Cucumis melo] >XP_008450625.1 PREDICT... [more]
BLAST of Sed0020474 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q54X418.8e-1138.68SOSS complex subunit B homolog OS=Dictyostelium discoideum OX=44689 GN=DDB_G0279... [more]
A6QLK24.4e-1041.56SOSS complex subunit B1 OS=Bos taurus OX=9913 GN=NABP2 PE=2 SV=1[more]
Q9BQ154.4e-1041.56SOSS complex subunit B1 OS=Homo sapiens OX=9606 GN=NABP2 PE=1 SV=1[more]
Q8R2Y94.4e-1041.56SOSS complex subunit B1 OS=Mus musculus OX=10090 GN=Nabp2 PE=1 SV=1[more]
Q3SWT14.4e-1041.56SOSS complex subunit B1 OS=Rattus norvegicus OX=10116 GN=Nabp2 PE=2 SV=1[more]
BLAST of Sed0020474 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1HAL01.7e-5292.66SOSS complex subunit B homolog OS=Cucurbita moschata OX=3662 GN=LOC111462072 PE=... [more]
A0A1S3BPN42.4e-5191.74SOSS complex subunit B homolog OS=Cucumis melo OX=3656 GN=LOC103492156 PE=4 SV=1[more]
A0A5D3CIR32.4e-5191.74SOSS complex subunit B-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5... [more]
A0A0A0LW032.4e-5191.74Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G569370 PE=4 SV=1[more]
A0A6J1HZ662.6e-5088.07SOSS complex subunit B homolog OS=Cucurbita maxima OX=3661 GN=LOC111467936 PE=4 ... [more]
BLAST of Sed0020474 vs. TAIR 10
Match NameE-valueIdentityDescription
AT5G63690.19.3e-4066.67Nucleic acid-binding, OB-fold-like protein [more]
InterPro
Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D2.40.50.140coord: 1..81
e-value: 3.0E-19
score: 71.2
NoneNo IPR availablePANTHERPTHR13356OB FOLD NUCLEIC ACID BINDING PROTEIN-RELATEDcoord: 6..109
NoneNo IPR availablePANTHERPTHR13356:SF7BNAA02G33870D PROTEINcoord: 6..109
IPR012340Nucleic acid-binding, OB-foldSUPERFAMILY50249Nucleic acid-binding proteinscoord: 3..87

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Sed0020474.1Sed0020474.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0000724 double-strand break repair via homologous recombination
biological_process GO:0010212 response to ionizing radiation
cellular_component GO:0070876 SOSS complex
molecular_function GO:0003677 DNA binding