Sed0020262 (gene) Chayote v1

Overview
NameSed0020262
Typegene
OrganismSechium edule (Chayote v1)
DescriptionRING-type domain-containing protein
LocationLG10: 3774842 .. 3776096 (-)
RNA-Seq ExpressionSed0020262
SyntenySed0020262
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATTAAGTTTGCATTTAAGACCCTCACGACTCTTTTATTTTGCTTCTTGGGGCCTGGTTTCAATTTCGACCCCAAAAAGAATTAAAAACAGAGGTGGAATTCATCACAATCTTTGAAGAAACTCACGAGATCTCCATGGCCAAAGGTAATAATCCCAATTCATAATCCCATTTATTTACATTTCTCCCCCAAACGGGTTCATTTCTCGTACACGAATTTGTGTTTTTCTTCATTCAAAATTGAGAGATTTTTTTTTTTTTTTTTTTTTTATTGAATTGAAAAAATGAGTATTTTCGGTGTGATTTTACAGGAAGCTGCCAGGCAAGAAAGGGAAGATAGAACAATTTGGGGATTTTTGAGCGATCAAATGGACGGCGTCGATGGAGGGAGACGGCGGCGGAGTTTGAAGCAACGGCTAGGATTTAAAGTAATGGGCTGTTGTGGAGCTTCTTGGGGTTTCCGGCCGGCAGGCGGCGGGGACGGCGACGCCGACTCCGCCGCCGACGATATAAGATTACCGGACGGGGAGGTGATGAACACGCGCCATTTACCGGAGGAGGATCGGAGTTGCTTAAGTCCAGTTTCGTCGCCGGCGCCGTCGCCGTCTGGTATGAACTTAGCCACCGCGCTGGCGGCGGAGCGGCGGCTGAGAGCGTCGCCACGTGGACCGGAAAGGGATTTTGTAGAAACAAACAACGAGTTCGAATCACCGGCCGGAACGCCGTTGAGGGTGTCGCTGATGCGGCTGCTGGAAGAAACCCACGGCGGAGGCGGAGGCGGTGGCGGGGATTTGGGAGTGGCGGGAAATGAGTCGGTGTGCTGCGTGTGCATGGGAAGGAAAAAGGGAGCGGCATTTATTCCGTGTGGGCACACGTTTTGTAGGGTGTGTTCGAGGGAGCTGTGGCTGAATCGCGGATCTTGCCCGCTTTGCAACCGTCCGATCCTCGAGATTCTTGATATATTTTGAAGGTGCACGGCAAGTGTGATGGGGGTGAGAACAGAGGATTTGTTGAACTGCTCTTTTGCCTCAACAATCGTGACAGACTGTTTTCATTGGACGGTACTGAACGATGCCGTATTTGAACGACATGTGGATGCGGGTGACAGAACTCTTTACGTCCGAGAAAAAACGTTAAATTAATAATTTCGATGTAATTTTTATATACATGGGATTGAACAACTGCTACTTTGATGGTTGGGTTTTTCTAAAAGAAATAGTTGTATATTGGTTTTTTATTTTATTTTTTGTGTGGTCC

mRNA sequence

ATTAAGTTTGCATTTAAGACCCTCACGACTCTTTTATTTTGCTTCTTGGGGCCTGGTTTCAATTTCGACCCCAAAAAGAATTAAAAACAGAGGTGGAATTCATCACAATCTTTGAAGAAACTCACGAGATCTCCATGGCCAAAGGAAGCTGCCAGGCAAGAAAGGGAAGATAGAACAATTTGGGGATTTTTGAGCGATCAAATGGACGGCGTCGATGGAGGGAGACGGCGGCGGAGTTTGAAGCAACGGCTAGGATTTAAAGTAATGGGCTGTTGTGGAGCTTCTTGGGGTTTCCGGCCGGCAGGCGGCGGGGACGGCGACGCCGACTCCGCCGCCGACGATATAAGATTACCGGACGGGGAGGTGATGAACACGCGCCATTTACCGGAGGAGGATCGGAGTTGCTTAAGTCCAGTTTCGTCGCCGGCGCCGTCGCCGTCTGGTATGAACTTAGCCACCGCGCTGGCGGCGGAGCGGCGGCTGAGAGCGTCGCCACGTGGACCGGAAAGGGATTTTGTAGAAACAAACAACGAGTTCGAATCACCGGCCGGAACGCCGTTGAGGGTGTCGCTGATGCGGCTGCTGGAAGAAACCCACGGCGGAGGCGGAGGCGGTGGCGGGGATTTGGGAGTGGCGGGAAATGAGTCGGTGTGCTGCGTGTGCATGGGAAGGAAAAAGGGAGCGGCATTTATTCCGTGTGGGCACACGTTTTGTAGGGTGTGTTCGAGGGAGCTGTGGCTGAATCGCGGATCTTGCCCGCTTTGCAACCGTCCGATCCTCGAGATTCTTGATATATTTTGAAGGTGCACGGCAAGTGTGATGGGGGTGAGAACAGAGGATTTGTTGAACTGCTCTTTTGCCTCAACAATCGTGACAGACTGTTTTCATTGGACGGTACTGAACGATGCCGTATTTGAACGACATGTGGATGCGGGTGACAGAACTCTTTACGTCCGAGAAAAAACGTTAAATTAATAATTTCGATGTAATTTTTATATACATGGGATTGAACAACTGCTACTTTGATGGTTGGGTTTTTCTAAAAGAAATAGTTGTATATTGGTTTTTTATTTTATTTTTTGTGTGGTCC

Coding sequence (CDS)

ATGGACGGCGTCGATGGAGGGAGACGGCGGCGGAGTTTGAAGCAACGGCTAGGATTTAAAGTAATGGGCTGTTGTGGAGCTTCTTGGGGTTTCCGGCCGGCAGGCGGCGGGGACGGCGACGCCGACTCCGCCGCCGACGATATAAGATTACCGGACGGGGAGGTGATGAACACGCGCCATTTACCGGAGGAGGATCGGAGTTGCTTAAGTCCAGTTTCGTCGCCGGCGCCGTCGCCGTCTGGTATGAACTTAGCCACCGCGCTGGCGGCGGAGCGGCGGCTGAGAGCGTCGCCACGTGGACCGGAAAGGGATTTTGTAGAAACAAACAACGAGTTCGAATCACCGGCCGGAACGCCGTTGAGGGTGTCGCTGATGCGGCTGCTGGAAGAAACCCACGGCGGAGGCGGAGGCGGTGGCGGGGATTTGGGAGTGGCGGGAAATGAGTCGGTGTGCTGCGTGTGCATGGGAAGGAAAAAGGGAGCGGCATTTATTCCGTGTGGGCACACGTTTTGTAGGGTGTGTTCGAGGGAGCTGTGGCTGAATCGCGGATCTTGCCCGCTTTGCAACCGTCCGATCCTCGAGATTCTTGATATATTTTGA

Protein sequence

MDGVDGGRRRRSLKQRLGFKVMGCCGASWGFRPAGGGDGDADSAADDIRLPDGEVMNTRHLPEEDRSCLSPVSSPAPSPSGMNLATALAAERRLRASPRGPERDFVETNNEFESPAGTPLRVSLMRLLEETHGGGGGGGGDLGVAGNESVCCVCMGRKKGAAFIPCGHTFCRVCSRELWLNRGSCPLCNRPILEILDIF
Homology
BLAST of Sed0020262 vs. NCBI nr
Match: XP_004134982.2 (uncharacterized protein LOC101211804 [Cucumis sativus] >XP_031742563.1 uncharacterized protein LOC101211804 [Cucumis sativus] >KAE8647651.1 hypothetical protein Csa_002787 [Cucumis sativus])

HSP 1 Score: 287.3 bits (734), Expect = 9.8e-74
Identity = 154/215 (71.63%), Postives = 168/215 (78.14%), Query Frame = 0

Query: 1   MDGVD-GGRRRRSLKQRLGFKVMGCCGASWGFRPAGGGDGDADSAADDIRLPDGEVMNTR 60
           MDG+D GGRRR SLKQRLGFKVMGCCGA+WGFRP      D     DD R+PD EVMNTR
Sbjct: 1   MDGIDGGGRRRPSLKQRLGFKVMGCCGATWGFRPPSDSVRDGGGEDDDRRVPDLEVMNTR 60

Query: 61  HLPEE-DRSCLSPVSSPAPSPSGMNLATALAAERRLRASPRGPERDFVE-TNNEFES--- 120
               E +RSCLSP+S  +P PSGMNLATALAAERRLRASPRG E D VE  NN+F+S   
Sbjct: 61  REERELNRSCLSPLSVQSPGPSGMNLATALAAERRLRASPRGAEGDIVEFNNNDFDSAVG 120

Query: 121 --PAGTPLRVSLMRLLEETHGG-GGGGGGDLGVA-------GNESVCCVCMGRKKGAAFI 180
               GTPLRVSL+RLLEET GG   GGGG+LGVA        N+S+CCVCMGRKKGAAFI
Sbjct: 121 MMETGTPLRVSLLRLLEETDGGCDDGGGGNLGVAEKKRDETRNDSMCCVCMGRKKGAAFI 180

Query: 181 PCGHTFCRVCSRELWLNRGSCPLCNRPILEILDIF 200
           PCGHTFCR+CSRELWLNRGSCPLCNRPI+EILDIF
Sbjct: 181 PCGHTFCRICSRELWLNRGSCPLCNRPIIEILDIF 215

BLAST of Sed0020262 vs. NCBI nr
Match: XP_008440052.1 (PREDICTED: uncharacterized protein LOC103484644 [Cucumis melo] >XP_008440053.1 PREDICTED: uncharacterized protein LOC103484644 [Cucumis melo])

HSP 1 Score: 287.3 bits (734), Expect = 9.8e-74
Identity = 156/214 (72.90%), Postives = 167/214 (78.04%), Query Frame = 0

Query: 1   MDGVD-GGRRRRSLKQRLGFKVMGCCGASWGFRPAGGGDGDADSAADDIRLPDGEVMNTR 60
           MDGVD GGRRR SLKQRLGFKVMGCCGA+WGFRP      D     DD R+PD EVMNTR
Sbjct: 1   MDGVDGGGRRRPSLKQRLGFKVMGCCGATWGFRPPSVSVRDGGGEDDDRRVPDLEVMNTR 60

Query: 61  HLPEE-DRSCLSPVSSPAPSPSGMNLATALAAERRLRASPRGPERDFVE-TNNEFES--- 120
               E DRSCLSP+S  +P PSGMNLATALAAERRLRASPRG E   VE  NN+F+S   
Sbjct: 61  REERELDRSCLSPLSVQSPGPSGMNLATALAAERRLRASPRGAEGGIVEFNNNDFDSAVG 120

Query: 121 --PAGTPLRVSLMRLLEETHGGGGGGGGDLGVA-------GNESVCCVCMGRKKGAAFIP 180
               GTPLRVSL+RLLEET  GG  GGG+LGVA       GN+S+CCVCMGRKKGAAFIP
Sbjct: 121 MMETGTPLRVSLLRLLEETE-GGCDGGGNLGVAEKKREETGNDSMCCVCMGRKKGAAFIP 180

Query: 181 CGHTFCRVCSRELWLNRGSCPLCNRPILEILDIF 200
           CGHTFCRVCSRELWLNRGSCPLCNRPI+EILDIF
Sbjct: 181 CGHTFCRVCSRELWLNRGSCPLCNRPIIEILDIF 213

BLAST of Sed0020262 vs. NCBI nr
Match: XP_023518592.1 (E3 ubiquitin-protein ligase CIP8-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 286.6 bits (732), Expect = 1.7e-73
Identity = 160/221 (72.40%), Postives = 169/221 (76.47%), Query Frame = 0

Query: 1   MDGVDGGRR--RRSLKQRLGFKVMGCCGASWGFRPA----GGGDGDADSAADDIRLPDGE 60
           MDG DGGRR  RRS KQRLGFKVM CCGA+WGFRPA     GGD D D   DD   PD E
Sbjct: 1   MDGDDGGRRRQRRSFKQRLGFKVMRCCGATWGFRPATVSVRGGDDDDDD--DDRMEPDVE 60

Query: 61  VMNTRHLPEE---DRSCLSPVSSPAPSPSGMNLATALAAERRLRASPRGPERDFVETNNE 120
           VMNT   PEE   D  CLSP +  +P+ SGMNLATALAAERRLR SPRG E  FVE++ E
Sbjct: 61  VMNTPQFPEERELDLRCLSPFNISSPASSGMNLATALAAERRLRESPRGTEEGFVESSTE 120

Query: 121 FESPA-----GTPLRVSLMRLLEETHGGGGGG-GGDLGV-------AGNESVCCVCMGRK 180
           F+S A     GTPLRVSLMRLLEET GGGGGG GG+LGV       A N+SVCCVCMGRK
Sbjct: 121 FDSFAGMMGSGTPLRVSLMRLLEETDGGGGGGDGGNLGVTEKKIEEARNDSVCCVCMGRK 180

Query: 181 KGAAFIPCGHTFCRVCSRELWLNRGSCPLCNRPILEILDIF 200
           KGAAFIPCGHTFCRVCSRELWLNRGSCPLCNRPILEILDIF
Sbjct: 181 KGAAFIPCGHTFCRVCSRELWLNRGSCPLCNRPILEILDIF 219

BLAST of Sed0020262 vs. NCBI nr
Match: XP_023003446.1 (E3 ubiquitin-protein ligase CIP8-like [Cucurbita maxima])

HSP 1 Score: 286.2 bits (731), Expect = 2.2e-73
Identity = 161/221 (72.85%), Postives = 169/221 (76.47%), Query Frame = 0

Query: 1   MDGVDGG--RRRRSLKQRLGFKVMGCCGASWGFRPA----GGGDGDADSAADDIRLPDGE 60
           MDG DGG  RRRRSLKQRLGFKVM CCGA+WGFRPA     GGD D D   DD   PD E
Sbjct: 1   MDGDDGGRRRRRRSLKQRLGFKVMRCCGATWGFRPATVSVRGGDDDDDD--DDRIEPDVE 60

Query: 61  VMNTRHLPEE---DRSCLSPVSSPAPSPSGMNLATALAAERRLRASPRGPERDFVETNNE 120
           VMNT   PEE   D  CLSP +  +P+ SGMNLATALAAERRLR SPRG E  FVE++ E
Sbjct: 61  VMNTPQFPEERELDLRCLSPFNISSPASSGMNLATALAAERRLRESPRGTEEGFVESSTE 120

Query: 121 FESPA-----GTPLRVSLMRLLEETH-GGGGGGGGDLGV-------AGNESVCCVCMGRK 180
           F S A     GTPLRVSLMRLLEET  GGGGGGGG+LGV       A N+SVCCVCMGRK
Sbjct: 121 FASFAGMMGSGTPLRVSLMRLLEETDGGGGGGGGGNLGVTEKKIEEARNDSVCCVCMGRK 180

Query: 181 KGAAFIPCGHTFCRVCSRELWLNRGSCPLCNRPILEILDIF 200
           KGAAFIPCGHTFCRVCSRELWLNRGSCPLCNRPILEILDIF
Sbjct: 181 KGAAFIPCGHTFCRVCSRELWLNRGSCPLCNRPILEILDIF 219

BLAST of Sed0020262 vs. NCBI nr
Match: XP_022132493.1 (E3 ubiquitin-protein ligase RFWD2 isoform X2 [Momordica charantia] >XP_022132495.1 E3 ubiquitin-protein ligase RFWD2 isoform X2 [Momordica charantia])

HSP 1 Score: 285.8 bits (730), Expect = 2.9e-73
Identity = 159/214 (74.30%), Postives = 167/214 (78.04%), Query Frame = 0

Query: 2   DGVD-GGRRRRSLKQRLGFKVMGCCG--ASWGFRPAG----GGDGDADSAADDIRLPDGE 61
           DGVD GGRRRR+LKQRLGFKVMGCCG  A+WG RP      GGD D D   DD R+PD E
Sbjct: 3   DGVDGGGRRRRTLKQRLGFKVMGCCGGVATWGCRPPAVSVRGGDDD-DDDEDDRRVPDAE 62

Query: 62  VMNTRHLPEE---DRSCLSPVSSPAPSPSGMNLATALAAERRLRASPRGPERDFVETNN- 121
           VMNTR  PEE   DRSCLSP S  +P+PSGMNLATALAAERRLRASPRG E   VE NN 
Sbjct: 63  VMNTRPSPEERDLDRSCLSPFSGSSPAPSGMNLATALAAERRLRASPRGAEGGLVEPNND 122

Query: 122 EFESPA-----GTPLRVSLMRLLEETHGGGGGGGGDLGVAGNESVCCVCMGRKKGAAFIP 181
           EF+S A     GTPLRVSL+RLLEET GGGG        AGN+SVCCVCMGRKKGAAFIP
Sbjct: 123 EFDSLAGIAVTGTPLRVSLLRLLEETDGGGGVAEKKREEAGNDSVCCVCMGRKKGAAFIP 182

Query: 182 CGHTFCRVCSRELWLNRGSCPLCNRPILEILDIF 200
           CGHTFCRVCSRELWLNRGSCPLCNR ILEILDIF
Sbjct: 183 CGHTFCRVCSRELWLNRGSCPLCNRSILEILDIF 215

BLAST of Sed0020262 vs. ExPASy Swiss-Prot
Match: Q8LA32 (Probable E3 ubiquitin-protein ligase LUL4 OS=Arabidopsis thaliana OX=3702 GN=LUL4 PE=2 SV=1)

HSP 1 Score: 55.8 bits (133), Expect = 6.3e-07
Identity = 29/80 (36.25%), Postives = 41/80 (51.25%), Query Frame = 0

Query: 120 LRVSLMRLLEETHGGGGGGGGDLGVAGNESVCCVCMGRKKGAAFIPCGH-TFCRVCSREL 179
           +R  L  L   T  G   G   L  +G+ + C +CM   K  A +PC H   C  C++EL
Sbjct: 274 VRYELRELYGSTTQGAASG---LDESGSGTECVICMTEAKDTAVLPCRHLCMCSDCAKEL 333

Query: 180 WLNRGSCPLCNRPILEILDI 199
            L    CP+C +PI E+L+I
Sbjct: 334 RLQSNKCPICRQPIEELLEI 350

BLAST of Sed0020262 vs. ExPASy Swiss-Prot
Match: Q8BFW4 (Tripartite motif-containing protein 65 OS=Mus musculus OX=10090 GN=Trim65 PE=1 SV=1)

HSP 1 Score: 48.5 bits (114), Expect = 1.0e-04
Identity = 18/45 (40.00%), Postives = 27/45 (60.00%), Query Frame = 0

Query: 151 CCVCMGRKKGAAFIPCGHTFCRVCSRELWLN-RGSCPLCNRPILE 195
           C +C+GR +    +PCGH+FC  C ++ W +   SCP C +P  E
Sbjct: 13  CSICLGRYRDPVTLPCGHSFCGNCIQDSWRSCEKSCPECRQPFPE 57

BLAST of Sed0020262 vs. ExPASy TrEMBL
Match: A0A1S3AZT0 (uncharacterized protein LOC103484644 OS=Cucumis melo OX=3656 GN=LOC103484644 PE=4 SV=1)

HSP 1 Score: 287.3 bits (734), Expect = 4.7e-74
Identity = 156/214 (72.90%), Postives = 167/214 (78.04%), Query Frame = 0

Query: 1   MDGVD-GGRRRRSLKQRLGFKVMGCCGASWGFRPAGGGDGDADSAADDIRLPDGEVMNTR 60
           MDGVD GGRRR SLKQRLGFKVMGCCGA+WGFRP      D     DD R+PD EVMNTR
Sbjct: 1   MDGVDGGGRRRPSLKQRLGFKVMGCCGATWGFRPPSVSVRDGGGEDDDRRVPDLEVMNTR 60

Query: 61  HLPEE-DRSCLSPVSSPAPSPSGMNLATALAAERRLRASPRGPERDFVE-TNNEFES--- 120
               E DRSCLSP+S  +P PSGMNLATALAAERRLRASPRG E   VE  NN+F+S   
Sbjct: 61  REERELDRSCLSPLSVQSPGPSGMNLATALAAERRLRASPRGAEGGIVEFNNNDFDSAVG 120

Query: 121 --PAGTPLRVSLMRLLEETHGGGGGGGGDLGVA-------GNESVCCVCMGRKKGAAFIP 180
               GTPLRVSL+RLLEET  GG  GGG+LGVA       GN+S+CCVCMGRKKGAAFIP
Sbjct: 121 MMETGTPLRVSLLRLLEETE-GGCDGGGNLGVAEKKREETGNDSMCCVCMGRKKGAAFIP 180

Query: 181 CGHTFCRVCSRELWLNRGSCPLCNRPILEILDIF 200
           CGHTFCRVCSRELWLNRGSCPLCNRPI+EILDIF
Sbjct: 181 CGHTFCRVCSRELWLNRGSCPLCNRPIIEILDIF 213

BLAST of Sed0020262 vs. ExPASy TrEMBL
Match: A0A0A0KMY7 (RING-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G512860 PE=4 SV=1)

HSP 1 Score: 287.3 bits (734), Expect = 4.7e-74
Identity = 154/215 (71.63%), Postives = 168/215 (78.14%), Query Frame = 0

Query: 1   MDGVD-GGRRRRSLKQRLGFKVMGCCGASWGFRPAGGGDGDADSAADDIRLPDGEVMNTR 60
           MDG+D GGRRR SLKQRLGFKVMGCCGA+WGFRP      D     DD R+PD EVMNTR
Sbjct: 29  MDGIDGGGRRRPSLKQRLGFKVMGCCGATWGFRPPSDSVRDGGGEDDDRRVPDLEVMNTR 88

Query: 61  HLPEE-DRSCLSPVSSPAPSPSGMNLATALAAERRLRASPRGPERDFVE-TNNEFES--- 120
               E +RSCLSP+S  +P PSGMNLATALAAERRLRASPRG E D VE  NN+F+S   
Sbjct: 89  REERELNRSCLSPLSVQSPGPSGMNLATALAAERRLRASPRGAEGDIVEFNNNDFDSAVG 148

Query: 121 --PAGTPLRVSLMRLLEETHGG-GGGGGGDLGVA-------GNESVCCVCMGRKKGAAFI 180
               GTPLRVSL+RLLEET GG   GGGG+LGVA        N+S+CCVCMGRKKGAAFI
Sbjct: 149 MMETGTPLRVSLLRLLEETDGGCDDGGGGNLGVAEKKRDETRNDSMCCVCMGRKKGAAFI 208

Query: 181 PCGHTFCRVCSRELWLNRGSCPLCNRPILEILDIF 200
           PCGHTFCR+CSRELWLNRGSCPLCNRPI+EILDIF
Sbjct: 209 PCGHTFCRICSRELWLNRGSCPLCNRPIIEILDIF 243

BLAST of Sed0020262 vs. ExPASy TrEMBL
Match: A0A6J1KPA2 (E3 ubiquitin-protein ligase CIP8-like OS=Cucurbita maxima OX=3661 GN=LOC111497056 PE=4 SV=1)

HSP 1 Score: 286.2 bits (731), Expect = 1.1e-73
Identity = 161/221 (72.85%), Postives = 169/221 (76.47%), Query Frame = 0

Query: 1   MDGVDGG--RRRRSLKQRLGFKVMGCCGASWGFRPA----GGGDGDADSAADDIRLPDGE 60
           MDG DGG  RRRRSLKQRLGFKVM CCGA+WGFRPA     GGD D D   DD   PD E
Sbjct: 1   MDGDDGGRRRRRRSLKQRLGFKVMRCCGATWGFRPATVSVRGGDDDDDD--DDRIEPDVE 60

Query: 61  VMNTRHLPEE---DRSCLSPVSSPAPSPSGMNLATALAAERRLRASPRGPERDFVETNNE 120
           VMNT   PEE   D  CLSP +  +P+ SGMNLATALAAERRLR SPRG E  FVE++ E
Sbjct: 61  VMNTPQFPEERELDLRCLSPFNISSPASSGMNLATALAAERRLRESPRGTEEGFVESSTE 120

Query: 121 FESPA-----GTPLRVSLMRLLEETH-GGGGGGGGDLGV-------AGNESVCCVCMGRK 180
           F S A     GTPLRVSLMRLLEET  GGGGGGGG+LGV       A N+SVCCVCMGRK
Sbjct: 121 FASFAGMMGSGTPLRVSLMRLLEETDGGGGGGGGGNLGVTEKKIEEARNDSVCCVCMGRK 180

Query: 181 KGAAFIPCGHTFCRVCSRELWLNRGSCPLCNRPILEILDIF 200
           KGAAFIPCGHTFCRVCSRELWLNRGSCPLCNRPILEILDIF
Sbjct: 181 KGAAFIPCGHTFCRVCSRELWLNRGSCPLCNRPILEILDIF 219

BLAST of Sed0020262 vs. ExPASy TrEMBL
Match: A0A6J1BWE5 (E3 ubiquitin-protein ligase RFWD2 isoform X2 OS=Momordica charantia OX=3673 GN=LOC111005336 PE=4 SV=1)

HSP 1 Score: 285.8 bits (730), Expect = 1.4e-73
Identity = 159/214 (74.30%), Postives = 167/214 (78.04%), Query Frame = 0

Query: 2   DGVD-GGRRRRSLKQRLGFKVMGCCG--ASWGFRPAG----GGDGDADSAADDIRLPDGE 61
           DGVD GGRRRR+LKQRLGFKVMGCCG  A+WG RP      GGD D D   DD R+PD E
Sbjct: 3   DGVDGGGRRRRTLKQRLGFKVMGCCGGVATWGCRPPAVSVRGGDDD-DDDEDDRRVPDAE 62

Query: 62  VMNTRHLPEE---DRSCLSPVSSPAPSPSGMNLATALAAERRLRASPRGPERDFVETNN- 121
           VMNTR  PEE   DRSCLSP S  +P+PSGMNLATALAAERRLRASPRG E   VE NN 
Sbjct: 63  VMNTRPSPEERDLDRSCLSPFSGSSPAPSGMNLATALAAERRLRASPRGAEGGLVEPNND 122

Query: 122 EFESPA-----GTPLRVSLMRLLEETHGGGGGGGGDLGVAGNESVCCVCMGRKKGAAFIP 181
           EF+S A     GTPLRVSL+RLLEET GGGG        AGN+SVCCVCMGRKKGAAFIP
Sbjct: 123 EFDSLAGIAVTGTPLRVSLLRLLEETDGGGGVAEKKREEAGNDSVCCVCMGRKKGAAFIP 182

Query: 182 CGHTFCRVCSRELWLNRGSCPLCNRPILEILDIF 200
           CGHTFCRVCSRELWLNRGSCPLCNR ILEILDIF
Sbjct: 183 CGHTFCRVCSRELWLNRGSCPLCNRSILEILDIF 215

BLAST of Sed0020262 vs. ExPASy TrEMBL
Match: A0A6J1BTZ3 (E3 ubiquitin-protein ligase RFWD2 isoform X1 OS=Momordica charantia OX=3673 GN=LOC111005336 PE=4 SV=1)

HSP 1 Score: 285.8 bits (730), Expect = 1.4e-73
Identity = 159/214 (74.30%), Postives = 167/214 (78.04%), Query Frame = 0

Query: 2   DGVD-GGRRRRSLKQRLGFKVMGCCG--ASWGFRPAG----GGDGDADSAADDIRLPDGE 61
           DGVD GGRRRR+LKQRLGFKVMGCCG  A+WG RP      GGD D D   DD R+PD E
Sbjct: 31  DGVDGGGRRRRTLKQRLGFKVMGCCGGVATWGCRPPAVSVRGGDDD-DDDEDDRRVPDAE 90

Query: 62  VMNTRHLPEE---DRSCLSPVSSPAPSPSGMNLATALAAERRLRASPRGPERDFVETNN- 121
           VMNTR  PEE   DRSCLSP S  +P+PSGMNLATALAAERRLRASPRG E   VE NN 
Sbjct: 91  VMNTRPSPEERDLDRSCLSPFSGSSPAPSGMNLATALAAERRLRASPRGAEGGLVEPNND 150

Query: 122 EFESPA-----GTPLRVSLMRLLEETHGGGGGGGGDLGVAGNESVCCVCMGRKKGAAFIP 181
           EF+S A     GTPLRVSL+RLLEET GGGG        AGN+SVCCVCMGRKKGAAFIP
Sbjct: 151 EFDSLAGIAVTGTPLRVSLLRLLEETDGGGGVAEKKREEAGNDSVCCVCMGRKKGAAFIP 210

Query: 182 CGHTFCRVCSRELWLNRGSCPLCNRPILEILDIF 200
           CGHTFCRVCSRELWLNRGSCPLCNR ILEILDIF
Sbjct: 211 CGHTFCRVCSRELWLNRGSCPLCNRSILEILDIF 243

BLAST of Sed0020262 vs. TAIR 10
Match: AT4G03965.1 (RING/U-box superfamily protein )

HSP 1 Score: 174.1 bits (440), Expect = 1.1e-43
Identity = 105/211 (49.76%), Postives = 118/211 (55.92%), Query Frame = 0

Query: 1   MDGVDGGRRR-RSLKQRLGFKVMGCCGASWGFRPAGGGDGDADSAADDIRLPDGEVMNTR 60
           MDG+D  RRR R+LK+RLGFK +GCCG +WG R       D D                 
Sbjct: 29  MDGLDRSRRRKRTLKERLGFKRIGCCGPTWGLRLTSNTGEDDDE---------------- 88

Query: 61  HLPEEDRSCLSPVSSPAPSPSGMNLATALAAERRLRASPRGPERDFVETNNEFESPAGTP 120
             P E+R          P   GMNLATALAAER  R            T     S + TP
Sbjct: 89  --PFENRLVSGSDHVTGPLNQGMNLATALAAERNYR------------TEETEASGSLTP 148

Query: 121 LRVSLMRLLE-----------ETHGGGGGGGGDLGVAGNESVCCVCMGRKKGAAFIPCGH 180
           L+VSLMRLLE           ET          +    N+SVCCVCMGRKKGAAFIPCGH
Sbjct: 149 LKVSLMRLLEETAERVVVEENETERVTASASSTVRGVNNDSVCCVCMGRKKGAAFIPCGH 208

Query: 181 TFCRVCSRELWLNRGSCPLCNRPILEILDIF 200
           TFCRVCSRE+WLNRGSCPLCNRPI+EILDI+
Sbjct: 209 TFCRVCSREVWLNRGSCPLCNRPIIEILDIY 209

BLAST of Sed0020262 vs. TAIR 10
Match: AT4G22250.1 (RING/U-box superfamily protein )

HSP 1 Score: 172.6 bits (436), Expect = 3.3e-43
Identity = 105/212 (49.53%), Postives = 123/212 (58.02%), Query Frame = 0

Query: 1   MDGVDGGRRRRSLKQRLGFKVMGCCGASWGFRPAGGGDGDADSAADD----IRLPDGEVM 60
           M G D  RR+R+LK+RL FK +GCCG +W  R        + ++ DD    +++  G V+
Sbjct: 31  MSGHDLTRRKRTLKERLRFKCIGCCGPTWNLRLTNNTTLHSPTSRDDEIEELQIETGLVL 90

Query: 61  NTRHLPEEDRSCLSPVSSPAPSPSGMNLATALAAERRLRASPRGPERDFVETNNEFESPA 120
            + H                 S +GMNLATAL AER  R      E D            
Sbjct: 91  ESDH----------------GSGTGMNLATALEAERYNRGESTEAEADM----------- 150

Query: 121 GTPLRVSLMRLLEETHGGGGGGGG--------DLG-VAGNESVCCVCMGRKKGAAFIPCG 180
            TP RVSLMRLLEET        G         +G + GN+SVCCVCMGRKKGAAFIPCG
Sbjct: 151 -TPRRVSLMRLLEETAEKIVDDDGKETEILTASIGTLTGNDSVCCVCMGRKKGAAFIPCG 210

Query: 181 HTFCRVCSRELWLNRGSCPLCNRPILEILDIF 200
           HTFCRVCSRELWLNRGSCPLCNRPI+EILDIF
Sbjct: 211 HTFCRVCSRELWLNRGSCPLCNRPIIEILDIF 214

BLAST of Sed0020262 vs. TAIR 10
Match: AT1G62370.1 (RING/U-box superfamily protein )

HSP 1 Score: 117.5 bits (293), Expect = 1.3e-26
Identity = 84/210 (40.00%), Postives = 105/210 (50.00%), Query Frame = 0

Query: 2   DGVDGGRRRRS----LKQRLGFKVMGCCGASWGFRPAGGGDGDADSAADDIRLPDGEVMN 61
           D ++GG R  S    LKQRL F  +GCCG     R       +     DD    D E   
Sbjct: 29  DQINGGDRTMSKWTTLKQRLRFDWVGCCGKPLTLRLR---QAETPIVVDD---DDDE--- 88

Query: 62  TRHLPEEDRSCLSPVSSPAPSP--------SGMNLATALAAERRLRASPRGPERDFVETN 121
                EE ++ +   S P            S  NLA ALA ER    +            
Sbjct: 89  -----EESQNQVVDFSDPGTGTELDCLTRGSTRNLAEALAEERLAHVTE----------- 148

Query: 122 NEFESPAGTPLRVSLMRLLEETHGGGGGGGGDLGVAGNESVCCVCMGRKKGAAFIPCGHT 181
              E  A T  +V LMRLL E+     G        GN+ +CCVCMGR+KGAAFIPCGHT
Sbjct: 149 ---EETAVT--KVPLMRLLAES----DGCDSTTTWLGNDPLCCVCMGREKGAAFIPCGHT 204

Query: 182 FCRVCSRELWLNRGSCPLCNRPILEILDIF 200
           +CRVCSRE+W+NRG+CPLCNR I ++LD++
Sbjct: 209 YCRVCSREIWMNRGTCPLCNRSIFDVLDLY 204

BLAST of Sed0020262 vs. TAIR 10
Match: AT3G25030.1 (RING/U-box superfamily protein )

HSP 1 Score: 108.6 bits (270), Expect = 5.8e-24
Identity = 67/139 (48.20%), Postives = 76/139 (54.68%), Query Frame = 0

Query: 72  VSSPAPSPSG-MNLATALAAERRLRASPRGPERDFVETNNEFESPAG---TPLRVSLMRL 131
           V+  A S  G + L   LA ER L A              E E+PA     P R+SLM L
Sbjct: 125 VTEEASSVEGRIRLGAVLAEERALSA-------------REEETPAEREVEPARMSLMEL 184

Query: 132 LEETHG-------GGGGGGGDLGVAGNESVCCVCMGRKKGAAFIPCGHTFCRVCSRELWL 191
           LEE  G        G        V   E  CCVCM R KGAAFIPCGHTFCR+CSRELW+
Sbjct: 185 LEENEGQMSFVSVDGEAEEEVAAVTAAEISCCVCMVRSKGAAFIPCGHTFCRLCSRELWV 244

Query: 192 NRGSCPLCNRPILEILDIF 200
            RG+CPLCN  ILE+LD+F
Sbjct: 245 QRGNCPLCNTTILEVLDLF 250

BLAST of Sed0020262 vs. TAIR 10
Match: AT3G25030.2 (RING/U-box superfamily protein )

HSP 1 Score: 108.6 bits (270), Expect = 5.8e-24
Identity = 67/139 (48.20%), Postives = 76/139 (54.68%), Query Frame = 0

Query: 72  VSSPAPSPSG-MNLATALAAERRLRASPRGPERDFVETNNEFESPAG---TPLRVSLMRL 131
           V+  A S  G + L   LA ER L A              E E+PA     P R+SLM L
Sbjct: 125 VTEEASSVEGRIRLGAVLAEERALSA-------------REEETPAEREVEPARMSLMEL 184

Query: 132 LEETHG-------GGGGGGGDLGVAGNESVCCVCMGRKKGAAFIPCGHTFCRVCSRELWL 191
           LEE  G        G        V   E  CCVCM R KGAAFIPCGHTFCR+CSRELW+
Sbjct: 185 LEENEGQMSFVSVDGEAEEEVAAVTAAEISCCVCMVRSKGAAFIPCGHTFCRLCSRELWV 244

Query: 192 NRGSCPLCNRPILEILDIF 200
            RG+CPLCN  ILE+LD+F
Sbjct: 245 QRGNCPLCNTTILEVLDLF 250

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_004134982.29.8e-7471.63uncharacterized protein LOC101211804 [Cucumis sativus] >XP_031742563.1 uncharact... [more]
XP_008440052.19.8e-7472.90PREDICTED: uncharacterized protein LOC103484644 [Cucumis melo] >XP_008440053.1 P... [more]
XP_023518592.11.7e-7372.40E3 ubiquitin-protein ligase CIP8-like [Cucurbita pepo subsp. pepo][more]
XP_023003446.12.2e-7372.85E3 ubiquitin-protein ligase CIP8-like [Cucurbita maxima][more]
XP_022132493.12.9e-7374.30E3 ubiquitin-protein ligase RFWD2 isoform X2 [Momordica charantia] >XP_022132495... [more]
Match NameE-valueIdentityDescription
Q8LA326.3e-0736.25Probable E3 ubiquitin-protein ligase LUL4 OS=Arabidopsis thaliana OX=3702 GN=LUL... [more]
Q8BFW41.0e-0440.00Tripartite motif-containing protein 65 OS=Mus musculus OX=10090 GN=Trim65 PE=1 S... [more]
Match NameE-valueIdentityDescription
A0A1S3AZT04.7e-7472.90uncharacterized protein LOC103484644 OS=Cucumis melo OX=3656 GN=LOC103484644 PE=... [more]
A0A0A0KMY74.7e-7471.63RING-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G512860 P... [more]
A0A6J1KPA21.1e-7372.85E3 ubiquitin-protein ligase CIP8-like OS=Cucurbita maxima OX=3661 GN=LOC11149705... [more]
A0A6J1BWE51.4e-7374.30E3 ubiquitin-protein ligase RFWD2 isoform X2 OS=Momordica charantia OX=3673 GN=L... [more]
A0A6J1BTZ31.4e-7374.30E3 ubiquitin-protein ligase RFWD2 isoform X1 OS=Momordica charantia OX=3673 GN=L... [more]
Match NameE-valueIdentityDescription
AT4G03965.11.1e-4349.76RING/U-box superfamily protein [more]
AT4G22250.13.3e-4349.53RING/U-box superfamily protein [more]
AT1G62370.11.3e-2640.00RING/U-box superfamily protein [more]
AT3G25030.15.8e-2448.20RING/U-box superfamily protein [more]
AT3G25030.25.8e-2448.20RING/U-box superfamily protein [more]
InterPro
Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001841Zinc finger, RING-typeSMARTSM00184ring_2coord: 151..188
e-value: 2.8E-6
score: 36.9
IPR001841Zinc finger, RING-typePROSITEPS50089ZF_RING_2coord: 151..189
score: 10.895954
NoneNo IPR availablePFAMPF13920zf-C3HC4_3coord: 148..193
e-value: 1.0E-11
score: 44.5
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 62..81
NoneNo IPR availablePANTHERPTHR46629:SF22RING/U-BOX SUPERFAMILY PROTEINcoord: 1..199
NoneNo IPR availablePANTHERPTHR46629OS01G0917900 PROTEINcoord: 1..199
NoneNo IPR availableCDDcd16449RING-HCcoord: 151..188
e-value: 9.84857E-8
score: 44.7657
NoneNo IPR availableSUPERFAMILY57850RING/U-boxcoord: 147..196
IPR013083Zinc finger, RING/FYVE/PHD-typeGENE3D3.30.40.10Zinc/RING finger domain, C3HC4 (zinc finger)coord: 145..198
e-value: 3.2E-13
score: 50.9

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Sed0020262.1Sed0020262.1mRNA