Sed0020219 (gene) Chayote v1

Overview


Name	Sed0020219
Type	gene
Organism	Sechium edule (Chayote v1)
Description	Transmembrane protein
Location	LG11: 2904752 .. 2905399 (-)
RNA-Seq Expression	Sed0020219
Synteny	Sed0020219

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexonpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCACATCAATTTGTTGAACCCACTTCTCAATTTCGCCATTTCAAACCCCATAATCAAACCCAAATCACCAATCCTCTCGACCCACACAGCAATTTTCCACACATTTCCAGTCCAAACACCGATCATTTGCGCCAGGAAGAAGAAGAGGCGTACTGGGTTTCAAAGATCAACCAAATTGGCGCTTCAATTGGCGTCCCTCTTAGCCGTCAATCTCAAGATCTTACCCCCGCCGCTGGATTTGGTCGTCGCGGAATTGAGCGGCGGAGATGGAAACGGTGGTGGCTCGCGGCTGTGGAGGAGACTCGGCGGAGGCGGCGGAGATGGATGGAGAGGTAACAGGAAGATTATGCCATTTTTTGTTGGATTTTTGGCTGTGTCTGGTATTGCTTTGTTGTTTTTGACTGATTTTGAGATCGATGAGATTTGTGGAGTTGTTGGTTTTTCTGTATTTAGTGTTGCATTCATTCAGTTGTTGCTGAAAAGTGGTATTTCGAAGGGTTTCTTTTGGGGATTTGGCCTTTTTGCCATTTTAATTGCCCTTGGATTGAGAGAATTTGATGTGCAAAAATGGGTTGGAAAATTGGGGTTTTACAGTCCAAAGATGAAGAGTTTAAGAAGGAAAATTAAATGTAAGAAGATTTTCTGA

mRNA sequence

ATGCACATCAATTTGTTGAACCCACTTCTCAATTTCGCCATTTCAAACCCCATAATCAAACCCAAATCACCAATCCTCTCGACCCACACAGCAATTTTCCACACATTTCCAGTCCAAACACCGATCATTTGCGCCAGGAAGAAGAAGAGGCGTACTGGGTTTCAAAGATCAACCAAATTGGCGCTTCAATTGGCGTCCCTCTTAGCCGTCAATCTCAAGATCTTACCCCCGCCGCTGGATTTGGTCGTCGCGGAATTGAGCGGCGGAGATGGAAACGGTGGTGGCTCGCGGCTGTGGAGGAGACTCGGCGGAGGCGGCGGAGATGGATGGAGAGGTAACAGGAAGATTATGCCATTTTTTGTTGGATTTTTGGCTGTGTCTGGTATTGCTTTGTTGTTTTTGACTGATTTTGAGATCGATGAGATTTGTGGAGTTGTTGGTTTTTCTGTATTTAGTGTTGCATTCATTCAGTTGTTGCTGAAAAGTGGTATTTCGAAGGGTTTCTTTTGGGGATTTGGCCTTTTTGCCATTTTAATTGCCCTTGGATTGAGAGAATTTGATGTGCAAAAATGGGTTGGAAAATTGGGGTTTTACAGTCCAAAGATGAAGAGTTTAAGAAGGAAAATTAAATGTAAGAAGATTTTCTGA

Coding sequence (CDS)

ATGCACATCAATTTGTTGAACCCACTTCTCAATTTCGCCATTTCAAACCCCATAATCAAACCCAAATCACCAATCCTCTCGACCCACACAGCAATTTTCCACACATTTCCAGTCCAAACACCGATCATTTGCGCCAGGAAGAAGAAGAGGCGTACTGGGTTTCAAAGATCAACCAAATTGGCGCTTCAATTGGCGTCCCTCTTAGCCGTCAATCTCAAGATCTTACCCCCGCCGCTGGATTTGGTCGTCGCGGAATTGAGCGGCGGAGATGGAAACGGTGGTGGCTCGCGGCTGTGGAGGAGACTCGGCGGAGGCGGCGGAGATGGATGGAGAGGTAACAGGAAGATTATGCCATTTTTTGTTGGATTTTTGGCTGTGTCTGGTATTGCTTTGTTGTTTTTGACTGATTTTGAGATCGATGAGATTTGTGGAGTTGTTGGTTTTTCTGTATTTAGTGTTGCATTCATTCAGTTGTTGCTGAAAAGTGGTATTTCGAAGGGTTTCTTTTGGGGATTTGGCCTTTTTGCCATTTTAATTGCCCTTGGATTGAGAGAATTTGATGTGCAAAAATGGGTTGGAAAATTGGGGTTTTACAGTCCAAAGATGAAGAGTTTAAGAAGGAAAATTAAATGTAAGAAGATTTTCTGA

Protein sequence

MHINLLNPLLNFAISNPIIKPKSPILSTHTAIFHTFPVQTPIICARKKKRRTGFQRSTKLALQLASLLAVNLKILPPPLDLVVAELSGGDGNGGGSRLWRRLGGGGGDGWRGNRKIMPFFVGFLAVSGIALLFLTDFEIDEICGVVGFSVFSVAFIQLLLKSGISKGFFWGFGLFAILIALGLREFDVQKWVGKLGFYSPKMKSLRRKIKCKKIF

Homology

[Close]

BLAST of Sed0020219 vs. NCBI nr
Match: XP_038886968.1 (uncharacterized protein LOC120077138 [Benincasa hispida])

HSP 1 Score: 300.8 bits (769), Expect = 9.3e-78
Identity = 155/209 (74.16%), Postives = 170/209 (81.34%), Query Frame = 0


Query: 7   NPLLNFAISNPIIKPKSPILSTHTAIFHTFPVQTPIICARKKKRRTGFQRSTKLALQLAS 66
           NPLLNF +SNPII P+SP LST  A+      QT IICARKKK+  GFQRSTKL L+LAS
Sbjct: 17  NPLLNFTLSNPIIPPRSPFLSTLVAVSDGLQAQTSIICARKKKKSPGFQRSTKLMLELAS 76

Query: 67  LLAVNLKILPPPLDLVVAELSGGDGNGGGSRLWRRLGGGGGDGWRGNRKIMPFFVGFLAV 126
           LL  NLKILPPPLDLVV ELSGGDGNGGGSRLWR  GGGG DGWRG RK  P  +GFL V
Sbjct: 77  LLVSNLKILPPPLDLVVTELSGGDGNGGGSRLWRGFGGGGYDGWRGKRKKKPLLIGFLIV 136

Query: 127 SGIALLFLTDFEIDEICGVVGFSVFSVAFIQLLLKSGISKGFFWGFGLFAILIALGLREF 186
            G+ LLF+TDFEID +CGV+GF++FSVA IQL LKSGISK F WGFGLF ILIALGLR  
Sbjct: 137 CGLVLLFMTDFEIDTVCGVLGFALFSVALIQLWLKSGISKDFVWGFGLFGILIALGLRRS 196

Query: 187 DVQKWVGKLGFYSPKMKSLRRKIKCKKIF 216
           ++QKWVGKLG YSPKMKSLRRKI+ KKIF
Sbjct: 197 EMQKWVGKLGIYSPKMKSLRRKIRGKKIF 225

[Close]

BLAST of Sed0020219 vs. NCBI nr
Match: XP_008454859.1 (PREDICTED: uncharacterized protein LOC103495165 [Cucumis melo] >KAA0047954.1 hypothetical protein E6C27_scaffold385G00140 [Cucumis melo var. makuwa] >TYK18321.1 hypothetical protein E5676_scaffold456G00320 [Cucumis melo var. makuwa])

HSP 1 Score: 288.5 bits (737), Expect = 4.8e-74
Identity = 151/209 (72.25%), Postives = 168/209 (80.38%), Query Frame = 0


Query: 7   NPLLNFAISNPIIKPKSPILSTHTAIFHTFPVQTPIICARKKKRRTGFQRSTKLALQLAS 66
           NPLLNF +SNPI  PKSP +ST  A+      QT  ICARKKKR  GFQRSTKL L+LAS
Sbjct: 17  NPLLNFTLSNPITPPKSPFISTLVAVSDGLQPQTLTICARKKKRSPGFQRSTKLVLELAS 76

Query: 67  LLAVNLKILPPPLDLVVAELSGGDGNGGGSRLWRRLGGGGGDGWRGNRKIMPFFVGFLAV 126
           LLA N+KILPPPLDLVVAELSGGDGNGGGSRLWR  GGG  DGWRG RK  P F+GFL V
Sbjct: 77  LLASNIKILPPPLDLVVAELSGGDGNGGGSRLWRGFGGGDYDGWRGKRKKTPLFIGFLMV 136

Query: 127 SGIALLFLTDFEIDEICGVVGFSVFSVAFIQLLLKSGISKGFFWGFGLFAILIALGLREF 186
            G+ LLF+TDFEI+E+CG++GF+VFSVA IQL  K GISK F  GFGLF ILIALGLR  
Sbjct: 137 CGLVLLFVTDFEINEVCGILGFAVFSVALIQLWQKIGISKHFVLGFGLFGILIALGLRRS 196

Query: 187 DVQKWVGKLGFYSPKMKSLRRKIKCKKIF 216
           +VQKWV KLGFYSPKMKSLRRK+K ++IF
Sbjct: 197 EVQKWVRKLGFYSPKMKSLRRKLKGRRIF 225

[Close]

BLAST of Sed0020219 vs. NCBI nr
Match: AAO45758.1 (hypothetical protein [Cucumis melo subsp. melo])

HSP 1 Score: 285.4 bits (729), Expect = 4.0e-73
Identity = 150/209 (71.77%), Postives = 167/209 (79.90%), Query Frame = 0


Query: 7   NPLLNFAISNPIIKPKSPILSTHTAIFHTFPVQTPIICARKKKRRTGFQRSTKLALQLAS 66
           NPLLNF +SNPI  PKSP +ST  A+      QT  ICARKKKR  GFQRSTKL L+LAS
Sbjct: 17  NPLLNFTLSNPITPPKSPFISTLVAVSDGLQPQTLTICARKKKRSPGFQRSTKLVLELAS 76

Query: 67  LLAVNLKILPPPLDLVVAELSGGDGNGGGSRLWRRLGGGGGDGWRGNRKIMPFFVGFLAV 126
           LLA N+KILPPPLDLVVAELSGGDGNGGGSRLWR  G G  DGWRG RK  P F+GFL V
Sbjct: 77  LLASNIKILPPPLDLVVAELSGGDGNGGGSRLWRGFGEGDYDGWRGKRKKTPLFIGFLMV 136

Query: 127 SGIALLFLTDFEIDEICGVVGFSVFSVAFIQLLLKSGISKGFFWGFGLFAILIALGLREF 186
            G+ LLF+TDFEI+E+CG++GF+VFSVA IQL  K GISK F  GFGLF ILIALGLR  
Sbjct: 137 CGLVLLFVTDFEINEVCGILGFAVFSVALIQLWQKIGISKHFVLGFGLFGILIALGLRRS 196

Query: 187 DVQKWVGKLGFYSPKMKSLRRKIKCKKIF 216
           +VQKWV KLGFYSPKMKSLRRK+K ++IF
Sbjct: 197 EVQKWVRKLGFYSPKMKSLRRKLKGRRIF 225

[Close]

BLAST of Sed0020219 vs. NCBI nr
Match: KAG7030256.1 (hypothetical protein SDJN02_08603, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 284.3 bits (726), Expect = 9.0e-73
Identity = 149/209 (71.29%), Postives = 165/209 (78.95%), Query Frame = 0


Query: 7   NPLLNFAISNPIIKPKSPILSTHTAIFHTFPVQTPIICARKKKRRTGFQRSTKLALQLAS 66
           NPLLNF ISNP+I   S  LST  A+   F  QT IICARKK+RR  F RSTK+ L+LAS
Sbjct: 17  NPLLNFTISNPLIPSNSTFLSTLVAVSDGFRAQTSIICARKKRRRPVFLRSTKIVLELAS 76

Query: 67  LLAVNLKILPPPLDLVVAELSGGDGNGGGSRLWRRLGGGGGDGWRGNRKIMPFFVGFLAV 126
           LLA NLKILPPPLDLVVAELSGG+GNGGGSRLWRR GGGG DGWRG RK  P  +GFL +
Sbjct: 77  LLASNLKILPPPLDLVVAELSGGNGNGGGSRLWRRFGGGGYDGWRGKRKKTPLLIGFLIL 136

Query: 127 SGIALLFLTDFEIDEICGVVGFSVFSVAFIQLLLKSGISKGFFWGFGLFAILIALGLREF 186
            G+AL   TDFE+D ICG +GF++FSVA IQL  +SGISK F WGFGLF ILIALGLR  
Sbjct: 137 CGLALCVFTDFELDAICGALGFALFSVALIQLWQRSGISKHFVWGFGLFGILIALGLRRS 196

Query: 187 DVQKWVGKLGFYSPKMKSLRRKIKCKKIF 216
           +VQKW GKLGFY PKMKSLRRKI+ KKIF
Sbjct: 197 EVQKWAGKLGFYRPKMKSLRRKIEGKKIF 225

[Close]

BLAST of Sed0020219 vs. NCBI nr
Match: XP_022999122.1 (uncharacterized protein LOC111493602 isoform X2 [Cucurbita maxima])

HSP 1 Score: 280.8 bits (717), Expect = 9.9e-72
Identity = 147/204 (72.06%), Postives = 160/204 (78.43%), Query Frame = 0


Query: 7   NPLLNFAISNPIIKPKSPILSTHTAIFHTFPVQTPIICARKKKRRTGFQRSTKLALQLAS 66
           NPLLNF ISNP+I   S  LST  A+   F  QT IICARKK+RR  F RSTKL L+LAS
Sbjct: 17  NPLLNFTISNPLIPSNSTFLSTLVAVSDGFRAQTSIICARKKRRRPVFLRSTKLVLELAS 76

Query: 67  LLAVNLKILPPPLDLVVAELSGGDGNGGGSRLWRRLGGGGGDGWRGNRKIMPFFVGFLAV 126
           L A NLKILPPPLDLVVAELSGGDGNGGGSRLWRR GGGG DGWRG RK  P  +GFL +
Sbjct: 77  LFASNLKILPPPLDLVVAELSGGDGNGGGSRLWRRFGGGGYDGWRGKRKKTPLLIGFLVL 136

Query: 127 SGIALLFLTDFEIDEICGVVGFSVFSVAFIQLLLKSGISKGFFWGFGLFAILIALGLREF 186
            G+AL   TDFE+D ICG +GF+VFSVA IQL  +SGISK F WGFGLF ILIALGLR  
Sbjct: 137 CGLALCVFTDFELDAICGALGFAVFSVALIQLWERSGISKHFVWGFGLFGILIALGLRRS 196

Query: 187 DVQKWVGKLGFYSPKMKSLRRKIK 211
           +VQKW GKLGFY PK+KSLRRKIK
Sbjct: 197 EVQKWAGKLGFYRPKIKSLRRKIK 220

[Close]

BLAST of Sed0020219 vs. ExPASy TrEMBL
Match: A0A5D3D456 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold456G00320 PE=4 SV=1)

HSP 1 Score: 288.5 bits (737), Expect = 2.3e-74
Identity = 151/209 (72.25%), Postives = 168/209 (80.38%), Query Frame = 0


Query: 7   NPLLNFAISNPIIKPKSPILSTHTAIFHTFPVQTPIICARKKKRRTGFQRSTKLALQLAS 66
           NPLLNF +SNPI  PKSP +ST  A+      QT  ICARKKKR  GFQRSTKL L+LAS
Sbjct: 17  NPLLNFTLSNPITPPKSPFISTLVAVSDGLQPQTLTICARKKKRSPGFQRSTKLVLELAS 76

Query: 67  LLAVNLKILPPPLDLVVAELSGGDGNGGGSRLWRRLGGGGGDGWRGNRKIMPFFVGFLAV 126
           LLA N+KILPPPLDLVVAELSGGDGNGGGSRLWR  GGG  DGWRG RK  P F+GFL V
Sbjct: 77  LLASNIKILPPPLDLVVAELSGGDGNGGGSRLWRGFGGGDYDGWRGKRKKTPLFIGFLMV 136

Query: 127 SGIALLFLTDFEIDEICGVVGFSVFSVAFIQLLLKSGISKGFFWGFGLFAILIALGLREF 186
            G+ LLF+TDFEI+E+CG++GF+VFSVA IQL  K GISK F  GFGLF ILIALGLR  
Sbjct: 137 CGLVLLFVTDFEINEVCGILGFAVFSVALIQLWQKIGISKHFVLGFGLFGILIALGLRRS 196

Query: 187 DVQKWVGKLGFYSPKMKSLRRKIKCKKIF 216
           +VQKWV KLGFYSPKMKSLRRK+K ++IF
Sbjct: 197 EVQKWVRKLGFYSPKMKSLRRKLKGRRIF 225

[Close]

BLAST of Sed0020219 vs. ExPASy TrEMBL
Match: A0A1S3C0R6 (uncharacterized protein LOC103495165 OS=Cucumis melo OX=3656 GN=LOC103495165 PE=4 SV=1)

HSP 1 Score: 288.5 bits (737), Expect = 2.3e-74
Identity = 151/209 (72.25%), Postives = 168/209 (80.38%), Query Frame = 0


Query: 7   NPLLNFAISNPIIKPKSPILSTHTAIFHTFPVQTPIICARKKKRRTGFQRSTKLALQLAS 66
           NPLLNF +SNPI  PKSP +ST  A+      QT  ICARKKKR  GFQRSTKL L+LAS
Sbjct: 17  NPLLNFTLSNPITPPKSPFISTLVAVSDGLQPQTLTICARKKKRSPGFQRSTKLVLELAS 76

Query: 67  LLAVNLKILPPPLDLVVAELSGGDGNGGGSRLWRRLGGGGGDGWRGNRKIMPFFVGFLAV 126
           LLA N+KILPPPLDLVVAELSGGDGNGGGSRLWR  GGG  DGWRG RK  P F+GFL V
Sbjct: 77  LLASNIKILPPPLDLVVAELSGGDGNGGGSRLWRGFGGGDYDGWRGKRKKTPLFIGFLMV 136

Query: 127 SGIALLFLTDFEIDEICGVVGFSVFSVAFIQLLLKSGISKGFFWGFGLFAILIALGLREF 186
            G+ LLF+TDFEI+E+CG++GF+VFSVA IQL  K GISK F  GFGLF ILIALGLR  
Sbjct: 137 CGLVLLFVTDFEINEVCGILGFAVFSVALIQLWQKIGISKHFVLGFGLFGILIALGLRRS 196

Query: 187 DVQKWVGKLGFYSPKMKSLRRKIKCKKIF 216
           +VQKWV KLGFYSPKMKSLRRK+K ++IF
Sbjct: 197 EVQKWVRKLGFYSPKMKSLRRKLKGRRIF 225

[Close]

BLAST of Sed0020219 vs. ExPASy TrEMBL
Match: Q84KA4 (Uncharacterized protein OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1)

HSP 1 Score: 285.4 bits (729), Expect = 1.9e-73
Identity = 150/209 (71.77%), Postives = 167/209 (79.90%), Query Frame = 0


Query: 7   NPLLNFAISNPIIKPKSPILSTHTAIFHTFPVQTPIICARKKKRRTGFQRSTKLALQLAS 66
           NPLLNF +SNPI  PKSP +ST  A+      QT  ICARKKKR  GFQRSTKL L+LAS
Sbjct: 17  NPLLNFTLSNPITPPKSPFISTLVAVSDGLQPQTLTICARKKKRSPGFQRSTKLVLELAS 76

Query: 67  LLAVNLKILPPPLDLVVAELSGGDGNGGGSRLWRRLGGGGGDGWRGNRKIMPFFVGFLAV 126
           LLA N+KILPPPLDLVVAELSGGDGNGGGSRLWR  G G  DGWRG RK  P F+GFL V
Sbjct: 77  LLASNIKILPPPLDLVVAELSGGDGNGGGSRLWRGFGEGDYDGWRGKRKKTPLFIGFLMV 136

Query: 127 SGIALLFLTDFEIDEICGVVGFSVFSVAFIQLLLKSGISKGFFWGFGLFAILIALGLREF 186
            G+ LLF+TDFEI+E+CG++GF+VFSVA IQL  K GISK F  GFGLF ILIALGLR  
Sbjct: 137 CGLVLLFVTDFEINEVCGILGFAVFSVALIQLWQKIGISKHFVLGFGLFGILIALGLRRS 196

Query: 187 DVQKWVGKLGFYSPKMKSLRRKIKCKKIF 216
           +VQKWV KLGFYSPKMKSLRRK+K ++IF
Sbjct: 197 EVQKWVRKLGFYSPKMKSLRRKLKGRRIF 225

[Close]

BLAST of Sed0020219 vs. ExPASy TrEMBL
Match: A0A6J1KC74 (uncharacterized protein LOC111493602 isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111493602 PE=4 SV=1)

HSP 1 Score: 280.8 bits (717), Expect = 4.8e-72
Identity = 147/204 (72.06%), Postives = 160/204 (78.43%), Query Frame = 0


Query: 7   NPLLNFAISNPIIKPKSPILSTHTAIFHTFPVQTPIICARKKKRRTGFQRSTKLALQLAS 66
           NPLLNF ISNP+I   S  LST  A+   F  QT IICARKK+RR  F RSTKL L+LAS
Sbjct: 17  NPLLNFTISNPLIPSNSTFLSTLVAVSDGFRAQTSIICARKKRRRPVFLRSTKLVLELAS 76

Query: 67  LLAVNLKILPPPLDLVVAELSGGDGNGGGSRLWRRLGGGGGDGWRGNRKIMPFFVGFLAV 126
           L A NLKILPPPLDLVVAELSGGDGNGGGSRLWRR GGGG DGWRG RK  P  +GFL +
Sbjct: 77  LFASNLKILPPPLDLVVAELSGGDGNGGGSRLWRRFGGGGYDGWRGKRKKTPLLIGFLVL 136

Query: 127 SGIALLFLTDFEIDEICGVVGFSVFSVAFIQLLLKSGISKGFFWGFGLFAILIALGLREF 186
            G+AL   TDFE+D ICG +GF+VFSVA IQL  +SGISK F WGFGLF ILIALGLR  
Sbjct: 137 CGLALCVFTDFELDAICGALGFAVFSVALIQLWERSGISKHFVWGFGLFGILIALGLRRS 196

Query: 187 DVQKWVGKLGFYSPKMKSLRRKIK 211
           +VQKW GKLGFY PK+KSLRRKIK
Sbjct: 197 EVQKWAGKLGFYRPKIKSLRRKIK 220

[Close]

BLAST of Sed0020219 vs. ExPASy TrEMBL
Match: A0A6J1K9Z1 (uncharacterized protein LOC111493602 isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111493602 PE=4 SV=1)

HSP 1 Score: 280.8 bits (717), Expect = 4.8e-72
Identity = 147/204 (72.06%), Postives = 160/204 (78.43%), Query Frame = 0


Query: 7   NPLLNFAISNPIIKPKSPILSTHTAIFHTFPVQTPIICARKKKRRTGFQRSTKLALQLAS 66
           NPLLNF ISNP+I   S  LST  A+   F  QT IICARKK+RR  F RSTKL L+LAS
Sbjct: 17  NPLLNFTISNPLIPSNSTFLSTLVAVSDGFRAQTSIICARKKRRRPVFLRSTKLVLELAS 76

Query: 67  LLAVNLKILPPPLDLVVAELSGGDGNGGGSRLWRRLGGGGGDGWRGNRKIMPFFVGFLAV 126
           L A NLKILPPPLDLVVAELSGGDGNGGGSRLWRR GGGG DGWRG RK  P  +GFL +
Sbjct: 77  LFASNLKILPPPLDLVVAELSGGDGNGGGSRLWRRFGGGGYDGWRGKRKKTPLLIGFLVL 136

Query: 127 SGIALLFLTDFEIDEICGVVGFSVFSVAFIQLLLKSGISKGFFWGFGLFAILIALGLREF 186
            G+AL   TDFE+D ICG +GF+VFSVA IQL  +SGISK F WGFGLF ILIALGLR  
Sbjct: 137 CGLALCVFTDFELDAICGALGFAVFSVALIQLWERSGISKHFVWGFGLFGILIALGLRRS 196

Query: 187 DVQKWVGKLGFYSPKMKSLRRKIK 211
           +VQKW GKLGFY PK+KSLRRKIK
Sbjct: 197 EVQKWAGKLGFYRPKIKSLRRKIK 220

[Close]

BLAST of Sed0020219 vs. TAIR 10
Match: AT5G27440.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: shoot apex, shoot, flower, seed; EXPRESSED DURING: petal differentiation and expansion stage, E expanded cotyledon stage; Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). )

HSP 1 Score: 79.0 bits (193), Expect = 5.3e-15
Identity = 64/192 (33.33%), Postives = 98/192 (51.04%), Query Frame = 0


Query: 3   INLLNPLLNFAISNPIIKPK-SPILSTHTAIFHTFPVQTPIICARKKKRRTGFQRSTKLA 62
           ++L + L  F   NP    + S I    ++I H    Q+ ++CA+K+K+R G++R T+  
Sbjct: 4   LHLTSHLSRFHFLNPQKSLRLSSISRVSSSISHRTQFQSLVLCAKKRKQRVGYRRITRFL 63

Query: 63  LQLASLLAVNLKILPPPLDLVVAELSGGDGNGGGS---RLWRRLGGGGGDGWRGNRKIMP 122
               SLLA NL+ILP PLDLV+A+L G DG GGG      WR  G G  DGWR  +  +P
Sbjct: 64  FNSLSLLAPNLQILPQPLDLVIADLGGVDGGGGGRGGLGFWR--GWGRFDGWRRKKNKVP 123

Query: 123 FFV---------GFLAVSGIALLFLTDFEIDEICGVVGFSVFSVAFIQLLLKSGISKGFF 182
             V         GF  +SGI      + + + +  V+G  +F V  ++ L +    +  F
Sbjct: 124 ILVFVCVILWIYGFCKISGI------EIKSELVLKVLGLCLFGVTVVKELKR----EARF 183

The following BLAST results are available for this feature:

BLAST of Sed0020219 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038886968.1	9.3e-78	74.16	uncharacterized protein LOC120077138 [Benincasa hispida]	[more]
XP_008454859.1	4.8e-74	72.25	PREDICTED: uncharacterized protein LOC103495165 [Cucumis melo] >KAA0047954.1 hyp...	[more]
AAO45758.1	4.0e-73	71.77	hypothetical protein [Cucumis melo subsp. melo]	[more]
KAG7030256.1	9.0e-73	71.29	hypothetical protein SDJN02_08603, partial [Cucurbita argyrosperma subsp. argyro...	[more]
XP_022999122.1	9.9e-72	72.06	uncharacterized protein LOC111493602 isoform X2 [Cucurbita maxima]	[more]

BLAST of Sed0020219 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Sed0020219 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3D456	2.3e-74	72.25	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A1S3C0R6	2.3e-74	72.25	uncharacterized protein LOC103495165 OS=Cucumis melo OX=3656 GN=LOC103495165 PE=...	[more]
Q84KA4	1.9e-73	71.77	Uncharacterized protein OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1	[more]
A0A6J1KC74	4.8e-72	72.06	uncharacterized protein LOC111493602 isoform X1 OS=Cucurbita maxima OX=3661 GN=L...	[more]
A0A6J1K9Z1	4.8e-72	72.06	uncharacterized protein LOC111493602 isoform X2 OS=Cucurbita maxima OX=3661 GN=L...	[more]

BLAST of Sed0020219 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G27440.1	5.3e-15	33.33	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0020219.1	Sed0020219.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane