Sed0020218 (gene) Chayote v1

Overview
NameSed0020218
Typegene
OrganismSechium edule (Chayote v1)
DescriptionMethyltransferase-related protein
LocationLG01: 9122019 .. 9122887 (-)
RNA-Seq ExpressionSed0020218
SyntenySed0020218
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
TCTTTTTTGAGTTTTTGTATAAAAAAGTTATGATTGTGGGCTAACCAAATGTGTAACCTTATCTGAAAATGAACAAAAATATAATGCGGTTTTAGTCATAAGAAATAATAGAAAAAGAAATGAGTGGTTAGGTTAGGGCAGGTGGAAAAGCTAAGCAAAGCTTTGCTTCCATGGCGTCCAAATCCTCCGTTGACAATTCCACAGCTTCAGTCCCTTGATTTGCCCTAATCAATCTCTCTTCCCAAATTTCTCCCTTTCAGATCCACAAGAAGCACCAACAAAAAAAAATGTGTCCTCTGAGATTTATCCTCATATTTCTCTCAGCGACTCTCGCCGGCTTCTTCGTTCTCCGCAACCTCAAATCTCAGCCGCAAGATTTCGAATCTGACGACATTTCCGACGATACCTCAACCGCCGATCTCTCTTCCGATTCCTCCAAGGTTCTCGCAATTCTTTCTCTGATCTGAAACCTTAGCTTTGCAATTTGTTGTTTGATTGGGGTTTTGTTGAACAGGTCTCTTCGGCTTTGCGATCGGGATTCTGGACGGTGGTGGACATGGCCAGCGGCCGCTACCTGTGGAGGCATTTGTCTCAGAAGAAGCGTTCCGATTGACGATGATTACGACGCGTCGGGCCTTGGGGGTTTTTGTTTAGGGTTCATTTGTAATTGTTCAGGTTTGATGATGTTGTTGTTGTGTTCATCATCTTCTTCTTCTTCTTCTTCTGTTGTAAATCGATCAATAATATCTCTCTGTTGTAAAACCCCTCTGTTTTCTTTCGATTTCTCGTCGTTGACTTCCGTCTCTGTAACAGAAATATTACAATGTTCATGAAATTGCTCATCGCAAACGCTTCTGATCTTGATTGGG

mRNA sequence

TCTTTTTTGAGTTTTTGTATAAAAAAGTTATGATTGTGGGCTAACCAAATGTGTAACCTTATCTGAAAATGAACAAAAATATAATGCGGTTTTAGTCATAAGAAATAATAGAAAAAGAAATGAGTGGTTAGGTTAGGGCAGGTGGAAAAGCTAAGCAAAGCTTTGCTTCCATGGCGTCCAAATCCTCCGTTGACAATTCCACAGCTTCAGTCCCTTGATTTGCCCTAATCAATCTCTCTTCCCAAATTTCTCCCTTTCAGATCCACAAGAAGCACCAACAAAAAAAAATGTGTCCTCTGAGATTTATCCTCATATTTCTCTCAGCGACTCTCGCCGGCTTCTTCGTTCTCCGCAACCTCAAATCTCAGCCGCAAGATTTCGAATCTGACGACATTTCCGACGATACCTCAACCGCCGATCTCTCTTCCGATTCCTCCAAGGTCTCTTCGGCTTTGCGATCGGGATTCTGGACGGTGGTGGACATGGCCAGCGGCCGCTACCTGTGGAGGCATTTGTCTCAGAAGAAGCGTTCCGATTGACGATGATTACGACGCGTCGGGCCTTGGGGGTTTTTGTTTAGGGTTCATTTGTAATTGTTCAGGTTTGATGATGTTGTTGTTGTGTTCATCATCTTCTTCTTCTTCTTCTTCTGTTGTAAATCGATCAATAATATCTCTCTGTTGTAAAACCCCTCTGTTTTCTTTCGATTTCTCGTCGTTGACTTCCGTCTCTGTAACAGAAATATTACAATGTTCATGAAATTGCTCATCGCAAACGCTTCTGATCTTGATTGGG

Coding sequence (CDS)

ATGTGTCCTCTGAGATTTATCCTCATATTTCTCTCAGCGACTCTCGCCGGCTTCTTCGTTCTCCGCAACCTCAAATCTCAGCCGCAAGATTTCGAATCTGACGACATTTCCGACGATACCTCAACCGCCGATCTCTCTTCCGATTCCTCCAAGGTCTCTTCGGCTTTGCGATCGGGATTCTGGACGGTGGTGGACATGGCCAGCGGCCGCTACCTGTGGAGGCATTTGTCTCAGAAGAAGCGTTCCGATTGA

Protein sequence

MCPLRFILIFLSATLAGFFVLRNLKSQPQDFESDDISDDTSTADLSSDSSKVSSALRSGFWTVVDMASGRYLWRHLSQKKRSD
Homology
[Close]
BLAST of Sed0020218 vs. NCBI nr
Match: XP_023525661.1 (uncharacterized protein LOC111789199 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 124.8 bits (312), Expect = 3.5e-25
Identity = 71/87 (81.61%), Postives = 77/87 (88.51%), Query Frame = 0 

Query: 1  MCPLRFILIFLSATLAGFFVLRNLKSQPQDFESDDISDDTSTADLSSD--SSKVSSALRS 60
          MCPLRFILIFLSATLAGFFVLRNLKSQPQDFE+DD SD  S  DLSS+  SSKV+SA++S
Sbjct: 1  MCPLRFILIFLSATLAGFFVLRNLKSQPQDFEADDNSDAHSN-DLSSNSTSSKVTSAMQS 60

Query: 61 GFWTVVDMASGRYLWRHL--SQKKRSD 84
          GFWTVVDMASGRYLWRHL  S +KRSD
Sbjct: 61 GFWTVVDMASGRYLWRHLFPSSQKRSD 86

[Close]
BLAST of Sed0020218 vs. NCBI nr
Match: XP_022997733.1 (uncharacterized protein LOC111492605 [Cucurbita maxima])

HSP 1 Score: 123.2 bits (308), Expect = 1.0e-24
Identity = 70/87 (80.46%), Postives = 77/87 (88.51%), Query Frame = 0 

Query: 1   MCPLRFILIFLSATLAGFFVLRNLKSQPQDFESDDISDDTSTADLSSD--SSKVSSALRS 60
           MCPLRFILIFLSATLAGFFVLRNLKSQPQDFE+D+ SD  S  DLSS+  SSKV+SA++S
Sbjct: 68  MCPLRFILIFLSATLAGFFVLRNLKSQPQDFEADENSDAHSN-DLSSNSTSSKVTSAMQS 127

Query: 61  GFWTVVDMASGRYLWRHL--SQKKRSD 84
           GFWTVVDMASGRYLWRHL  S +KRSD
Sbjct: 128 GFWTVVDMASGRYLWRHLFPSSQKRSD 153

[Close]
BLAST of Sed0020218 vs. NCBI nr
Match: XP_023519406.1 (uncharacterized protein LOC111782825 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 120.2 bits (300), Expect = 8.6e-24
Identity = 68/94 (72.34%), Postives = 75/94 (79.79%), Query Frame = 0 

Query: 1  MCPLRFILIFLSATLAGFFVLRNLKSQPQDFESDDISD---------DTSTADLSSDSSK 60
          MCPLRFILIFLSATLAGFFVLRNLKSQPQDFE+DD S+          TS++  SS  SK
Sbjct: 1  MCPLRFILIFLSATLAGFFVLRNLKSQPQDFEADDNSETHSNDVSTNSTSSSSSSSSFSK 60

Query: 61 VSSALRSGFWTVVDMASGRYLWRHL--SQKKRSD 84
          VSSA++SGFWTVVDMASGRYLWRHL  S KK S+
Sbjct: 61 VSSAMQSGFWTVVDMASGRYLWRHLMPSSKKPSN 94

[Close]
BLAST of Sed0020218 vs. NCBI nr
Match: XP_022949071.1 (uncharacterized protein LOC111452533 [Cucurbita moschata] >KAG6607364.1 hypothetical protein SDJN03_00706, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 119.8 bits (299), Expect = 1.1e-23
Identity = 68/87 (78.16%), Postives = 77/87 (88.51%), Query Frame = 0 

Query: 1  MCPLRFILIFLSATLAGFFVLRNLKSQPQDFESDDISDDTSTADLSSD--SSKVSSALRS 60
          MCPLRFILIFLSATLAGFFVLRN+KSQPQDFE++D SD  S  DLSS+  SSKV+SA++S
Sbjct: 1  MCPLRFILIFLSATLAGFFVLRNIKSQPQDFEAEDNSDAHSN-DLSSNSTSSKVTSAMQS 60

Query: 61 GFWTVVDMASGRYLWRHL--SQKKRSD 84
          GFWTVVDMASGRYLWR+L  S +KRSD
Sbjct: 61 GFWTVVDMASGRYLWRNLFPSSQKRSD 86

[Close]
BLAST of Sed0020218 vs. NCBI nr
Match: KAG7037036.1 (hypothetical protein SDJN02_00657 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 119.8 bits (299), Expect = 1.1e-23
Identity = 68/87 (78.16%), Postives = 77/87 (88.51%), Query Frame = 0 

Query: 1  MCPLRFILIFLSATLAGFFVLRNLKSQPQDFESDDISDDTSTADLSSD--SSKVSSALRS 60
          MCPLRFILIFLSATLAGFFVLRN+KSQPQDFE++D SD  S  DLSS+  SSKV+SA++S
Sbjct: 1  MCPLRFILIFLSATLAGFFVLRNIKSQPQDFETEDNSDAHSN-DLSSNSTSSKVTSAMQS 60

Query: 61 GFWTVVDMASGRYLWRHL--SQKKRSD 84
          GFWTVVDMASGRYLWR+L  S +KRSD
Sbjct: 61 GFWTVVDMASGRYLWRNLFPSSQKRSD 86

[Close]
BLAST of Sed0020218 vs. ExPASy TrEMBL
Match: A0A6J1KER9 (uncharacterized protein LOC111492605 OS=Cucurbita maxima OX=3661 GN=LOC111492605 PE=4 SV=1)

HSP 1 Score: 123.2 bits (308), Expect = 4.9e-25
Identity = 70/87 (80.46%), Postives = 77/87 (88.51%), Query Frame = 0 

Query: 1   MCPLRFILIFLSATLAGFFVLRNLKSQPQDFESDDISDDTSTADLSSD--SSKVSSALRS 60
           MCPLRFILIFLSATLAGFFVLRNLKSQPQDFE+D+ SD  S  DLSS+  SSKV+SA++S
Sbjct: 68  MCPLRFILIFLSATLAGFFVLRNLKSQPQDFEADENSDAHSN-DLSSNSTSSKVTSAMQS 127

Query: 61  GFWTVVDMASGRYLWRHL--SQKKRSD 84
           GFWTVVDMASGRYLWRHL  S +KRSD
Sbjct: 128 GFWTVVDMASGRYLWRHLFPSSQKRSD 153

[Close]
BLAST of Sed0020218 vs. ExPASy TrEMBL
Match: A0A6J1GAZ0 (uncharacterized protein LOC111452533 OS=Cucurbita moschata OX=3662 GN=LOC111452533 PE=4 SV=1)

HSP 1 Score: 119.8 bits (299), Expect = 5.5e-24
Identity = 68/87 (78.16%), Postives = 77/87 (88.51%), Query Frame = 0 

Query: 1  MCPLRFILIFLSATLAGFFVLRNLKSQPQDFESDDISDDTSTADLSSD--SSKVSSALRS 60
          MCPLRFILIFLSATLAGFFVLRN+KSQPQDFE++D SD  S  DLSS+  SSKV+SA++S
Sbjct: 1  MCPLRFILIFLSATLAGFFVLRNIKSQPQDFEAEDNSDAHSN-DLSSNSTSSKVTSAMQS 60

Query: 61 GFWTVVDMASGRYLWRHL--SQKKRSD 84
          GFWTVVDMASGRYLWR+L  S +KRSD
Sbjct: 61 GFWTVVDMASGRYLWRNLFPSSQKRSD 86

[Close]
BLAST of Sed0020218 vs. ExPASy TrEMBL
Match: A0A0A0LV42 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G025180 PE=4 SV=1)

HSP 1 Score: 114.0 bits (284), Expect = 3.0e-22
Identity = 65/85 (76.47%), Postives = 68/85 (80.00%), Query Frame = 0 

Query: 1  MCPLRFILIFLSATLAGFFVLRNLKSQPQDFESDDISDDTSTADLSSDSSKVSSALRSGF 60
          MCPLRFILIFLSATLAGFFVLRNLKSQPQDF + D SDD S    SSDSS  S  + SGF
Sbjct: 1  MCPLRFILIFLSATLAGFFVLRNLKSQPQDFVAGDNSDDNSNEFDSSDSSSCSK-VSSGF 60

Query: 61 WTVVDMASGRYLWRHL--SQKKRSD 84
          WT+VDMASGRYLWRHL  S KK SD
Sbjct: 61 WTLVDMASGRYLWRHLFPSSKKPSD 84

[Close]
BLAST of Sed0020218 vs. ExPASy TrEMBL
Match: A0A1S3BWD8 (uncharacterized protein LOC103494193 OS=Cucumis melo OX=3656 GN=LOC103494193 PE=4 SV=1)

HSP 1 Score: 114.0 bits (284), Expect = 3.0e-22
Identity = 64/85 (75.29%), Postives = 68/85 (80.00%), Query Frame = 0 

Query: 1  MCPLRFILIFLSATLAGFFVLRNLKSQPQDFESDDISDDTSTADLSSDSSKVSSALRSGF 60
          MCPLRFILIFLSATLAGFFVLRNLKSQPQDF + D SDD S+ +L S  S   S + SGF
Sbjct: 1  MCPLRFILIFLSATLAGFFVLRNLKSQPQDFVAGDNSDD-SSKELDSSDSTSCSKVSSGF 60

Query: 61 WTVVDMASGRYLWRHL--SQKKRSD 84
          WTVVDMASGRYLWRHL  S KK SD
Sbjct: 61 WTVVDMASGRYLWRHLFPSSKKPSD 84

[Close]
BLAST of Sed0020218 vs. ExPASy TrEMBL
Match: A0A6J1DPZ0 (uncharacterized protein LOC111022014 OS=Momordica charantia OX=3673 GN=LOC111022014 PE=4 SV=1)

HSP 1 Score: 112.5 bits (280), Expect = 8.7e-22
Identity = 64/88 (72.73%), Postives = 69/88 (78.41%), Query Frame = 0 

Query: 1  MCPLRFILIFLSATLAGFFVLRNLKSQPQDFE-SDDISDDTSTADLSSDSSKVSSALRSG 60
          MCPLRFILIFLSATLAGFFVLRNLKSQPQDFE +DD SD  S    ++ SS  +S + SG
Sbjct: 1  MCPLRFILIFLSATLAGFFVLRNLKSQPQDFEAADDNSDAHSNDSSAAHSSNSTSKVSSG 60

Query: 61 FWTVVDMASGRYLWRHL----SQKKRSD 84
          FWTVVDMASGRYLWRHL    S  KRSD
Sbjct: 61 FWTVVDMASGRYLWRHLFPSSSSPKRSD 88

[Close]
BLAST of Sed0020218 vs. TAIR 10
Match: AT5G58375.1 (Methyltransferase-related protein )

HSP 1 Score: 85.1 bits (209), Expect = 2.9e-17
Identity = 51/84 (60.71%), Postives = 58/84 (69.05%), Query Frame = 0 

Query: 1  MCPLRFILIFLSATLAGFFVLRNLKSQPQDFESDDISD-DTSTADLSSDSSKVSSALRSG 60
          MCPLR ILIFLSATLAGFFVL+ L S   D   D  +D + +  D  S  SKV  A++SG
Sbjct: 1  MCPLRLILIFLSATLAGFFVLQKLNSTSDDPLDDSFTDAEHADDDSVSGFSKVGMAMKSG 60

Query: 61 FWTVVDMASGRYLWRHL-SQKKRS 83
          FWT VDMASGRYLW +L S  KRS
Sbjct: 61 FWTCVDMASGRYLWNNLCSNAKRS 84

[Close]
BLAST of Sed0020218 vs. TAIR 10
Match: AT5G18150.1 (Methyltransferase-related protein )

HSP 1 Score: 67.4 bits (163), Expect = 6.2e-12
Identity = 34/80 (42.50%), Postives = 50/80 (62.50%), Query Frame = 0 

Query: 1  MCPLRFILIFLSATLAGFFVLRNLKSQPQDFESDDISDDTSTADLSSDSSKVSSALRSGF 60
          MCP+RF+L+F SA LAG+F  + + S P +F+S D  ++    +L          + +GF
Sbjct: 1  MCPMRFLLVFFSAVLAGYFAWKTVSSSP-EFDSPDELNEKQELNL-------KKKMENGF 60

Query: 61 WTVVDMASGRYLWRHLSQKK 81
          W  VDMASGRYLWR+L + +
Sbjct: 61 WVFVDMASGRYLWRNLKEMR 72

[Close]
BLAST of Sed0020218 vs. TAIR 10
Match: AT5G14602.1 (FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: Methyltransferase-related protein (TAIR:AT5G18150.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 64.3 bits (155), Expect = 5.2e-11
Identity = 35/81 (43.21%), Postives = 50/81 (61.73%), Query Frame = 0 

Query: 1  MCPLRFILIFLSATLAGFFVLRNLKSQPQDFESDDISDDTSTADLSSDSSKVSSALRSGF 60
          MCPLRF+L+F SA LAG+   R + S P+ F SD++    +      D  +    + +G 
Sbjct: 1  MCPLRFVLVFFSAVLAGYIAWRTVNSTPELF-SDELLQAEAKEKQGLDFKR---KMDNGL 60

Query: 61 WTVVDMASGRYLWRHLSQKKR 82
          WT VDMASGRYLWR+L + ++
Sbjct: 61 WTFVDMASGRYLWRNLKEMRQ 77

The following BLAST results are available for this feature:
BLAST of Sed0020218 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_023525661.13.5e-2581.61uncharacterized protein LOC111789199 [Cucurbita pepo subsp. pepo][more]
XP_022997733.11.0e-2480.46uncharacterized protein LOC111492605 [Cucurbita maxima][more]
XP_023519406.18.6e-2472.34uncharacterized protein LOC111782825 [Cucurbita pepo subsp. pepo][more]
XP_022949071.11.1e-2378.16uncharacterized protein LOC111452533 [Cucurbita moschata] >KAG6607364.1 hypothet... [more]
KAG7037036.11.1e-2378.16hypothetical protein SDJN02_00657 [Cucurbita argyrosperma subsp. argyrosperma][more]
BLAST of Sed0020218 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Sed0020218 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1KER94.9e-2580.46uncharacterized protein LOC111492605 OS=Cucurbita maxima OX=3661 GN=LOC111492605... [more]
A0A6J1GAZ05.5e-2478.16uncharacterized protein LOC111452533 OS=Cucurbita moschata OX=3662 GN=LOC1114525... [more]
A0A0A0LV423.0e-2276.47Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G025180 PE=4 SV=1[more]
A0A1S3BWD83.0e-2275.29uncharacterized protein LOC103494193 OS=Cucumis melo OX=3656 GN=LOC103494193 PE=... [more]
A0A6J1DPZ08.7e-2272.73uncharacterized protein LOC111022014 OS=Momordica charantia OX=3673 GN=LOC111022... [more]
BLAST of Sed0020218 vs. TAIR 10
Match NameE-valueIdentityDescription
AT5G58375.12.9e-1760.71Methyltransferase-related protein [more]
AT5G18150.16.2e-1242.50Methyltransferase-related protein [more]
AT5G14602.15.2e-1143.21FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknow... [more]
InterPro
Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 29..53
NoneNo IPR availablePANTHERPTHR34132:SF4EXPRESSED PROTEINcoord: 1..80
NoneNo IPR availablePANTHERPTHR34132EMB|CAB87627.1-RELATEDcoord: 1..80

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Sed0020218.1Sed0020218.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0016021 integral component of membrane
molecular_function GO:0016740 transferase activity