Sed0020171 (gene) Chayote v1

Overview
NameSed0020171
Typegene
OrganismSechium edule (Chayote v1)
Descriptionreplication protein A 70 kDa DNA-binding subunit A-like
LocationLG10: 9682411 .. 9682875 (-)
RNA-Seq ExpressionSed0020171
SyntenySed0020171
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGATAGTTTCAGATGGAGATTCAGAAGCCTACATTACCATGTTTGATGCTGCTGAGCATTTAACAAGTTGTAATGTGGTTGAGTATTTCAATGATCTATCTCAAGTAAGTTTTACATTTAAAACTAAGTTTTATAAACATTCAATTACGTAAATGTCATCCATTATATATTTGTATGCATAAATATTACATAATATGCTTTTTTTTTCTTATTAGGTTCAAAACAAGGAAAGTAGTGAATATTATCAAAACTTGGTTTTAGCTGAAGATAAGAAATACTACTTCTTGGTTAGATTGAACAAGGATGGAGAAAGAGATAGAGCACGCCGTCAAATTGTTGTTCAAGAGATATGCACAATCAATTTAATGGCAGAAAAGAAGTTTCCAATGAACAAAAATAAAGGAAAAAATGCCTTAGAAGAAGTCGAGAATGCCAATAATAAAAAGGCTAAAATTGAAGTTTAG

mRNA sequence

ATGATAGTTTCAGATGGAGATTCAGAAGCCTACATTACCATGTTTGATGCTGCTGAGCATTTAACAAGTTGTAATGTGGTTGAGTATTTCAATGATCTATCTCAAGTTCAAAACAAGGAAAGTAGTGAATATTATCAAAACTTGGTTTTAGCTGAAGATAAGAAATACTACTTCTTGGTTAGATTGAACAAGGATGGAGAAAGAGATAGAGCACGCCGTCAAATTGTTGTTCAAGAGATATGCACAATCAATTTAATGGCAGAAAAGAAGTTTCCAATGAACAAAAATAAAGGAAAAAATGCCTTAGAAGAAGTCGAGAATGCCAATAATAAAAAGGCTAAAATTGAAGTTTAG

Coding sequence (CDS)

ATGATAGTTTCAGATGGAGATTCAGAAGCCTACATTACCATGTTTGATGCTGCTGAGCATTTAACAAGTTGTAATGTGGTTGAGTATTTCAATGATCTATCTCAAGTTCAAAACAAGGAAAGTAGTGAATATTATCAAAACTTGGTTTTAGCTGAAGATAAGAAATACTACTTCTTGGTTAGATTGAACAAGGATGGAGAAAGAGATAGAGCACGCCGTCAAATTGTTGTTCAAGAGATATGCACAATCAATTTAATGGCAGAAAAGAAGTTTCCAATGAACAAAAATAAAGGAAAAAATGCCTTAGAAGAAGTCGAGAATGCCAATAATAAAAAGGCTAAAATTGAAGTTTAG

Protein sequence

MIVSDGDSEAYITMFDAAEHLTSCNVVEYFNDLSQVQNKESSEYYQNLVLAEDKKYYFLVRLNKDGERDRARRQIVVQEICTINLMAEKKFPMNKNKGKNALEEVENANNKKAKIEV
Homology
BLAST of Sed0020171 vs. NCBI nr
Match: KGN51395.1 (hypothetical protein Csa_008714 [Cucumis sativus])

HSP 1 Score: 71.2 bits (173), Expect = 6.5e-09
Identity = 34/58 (58.62%), Postives = 44/58 (75.86%), Query Frame = 0

Query: 1  MIVSDGDSEAYITMFDAAEHLTSCNVVEYFNDLSQVQNKESSEYYQNLVLAEDKKYYF 59
          + +SDGD + YIT+FDA+++L  C+V EY+ DL QV  KE S+ YQNLVL EDKKY F
Sbjct: 4  LTISDGDDKTYITIFDASKYLIGCSVTEYYKDL-QVYKKEKSKLYQNLVLCEDKKYCF 60

BLAST of Sed0020171 vs. NCBI nr
Match: OIT08014.1 (hypothetical protein A4A49_30234 [Nicotiana attenuata])

HSP 1 Score: 61.6 bits (148), Expect = 5.1e-06
Identity = 41/119 (34.45%), Postives = 68/119 (57.14%), Query Frame = 0

Query: 3   VSDGDSEAYITMFDAAEHLTSCNVVEYFNDLSQVQNKESSEYYQNLVLAEDKKYYFLVRL 62
           VS G+    + +FDAAE+L  C+V EY   +     KE S YY+ LVL++DK++ FLV++
Sbjct: 194 VSAGERRVRVILFDAAEYLFGCDVKEYIQSI--CTKKEESNYYRKLVLSKDKEFIFLVKI 253

Query: 63  ---NKDGERDRARRQI-VVQEICTINLMAE-KKFPMNKNKGKNALEEVENANNKKAKIE 117
              NK+  R    ++I   Q++ TI ++ E K   + + + K   E+    +NK+ K+E
Sbjct: 254 DNKNKNSGRILIAQEIHEFQDVATIKVLDEDKPAKIRRKRSKRNNEDQRPISNKRIKVE 310

BLAST of Sed0020171 vs. NCBI nr
Match: XP_020242412.1 (replication protein A 70 kDa DNA-binding subunit B-like [Asparagus officinalis])

HSP 1 Score: 61.6 bits (148), Expect = 5.1e-06
Identity = 42/126 (33.33%), Postives = 61/126 (48.41%), Query Frame = 0

Query: 3   VSDGDSEAYITMFDAAEHLTSCNVVEYFNDLSQVQNKESSEYYQNLVLAEDKKYYFLVRL 62
           V D   +AY+T+FD A  LT C+  EY +   +   +  S  YQ ++   DK+Y FLV++
Sbjct: 59  VKDHIDKAYVTLFDEARFLTGCSAEEYVDSFDEEGKEHLSPMYQKMMSCCDKEYLFLVKM 118

Query: 63  NKDGERDRARRQIVVQEICTINLM--------AEKKFPMNKNKGKNALEEVEN----ANN 117
           N+  E  R   +I  QEIC+ N           + K    K K   +L++  N     NN
Sbjct: 119 NRKDEEKRIEGRITAQEICSPNNFEPIKCDEDEDSKDISLKRKSMTSLKKDMNKRKFMNN 178

BLAST of Sed0020171 vs. NCBI nr
Match: XP_016476407.1 (PREDICTED: replication protein A 70 kDa DNA-binding subunit B-like [Nicotiana tabacum])

HSP 1 Score: 61.2 bits (147), Expect = 6.7e-06
Identity = 30/78 (38.46%), Postives = 49/78 (62.82%), Query Frame = 0

Query: 3   VSDGDSEAYITMFDAAEHLTSCNVVEYFNDLSQVQNKESSEYYQNLVLAEDKKYYFLVRL 62
           V D     Y+T+F++  +L  C+V  Y   +S  QNKE S++Y+ LVL+ +KK+ FLV++
Sbjct: 303 VFDKKERYYVTLFESTRYLLGCDVTTYIQSIS--QNKEESKFYRKLVLSLEKKFTFLVKI 362

Query: 63  NKDGERDRARRQIVVQEI 81
           +     DR  R+ +V+EI
Sbjct: 363 DSKNGGDRDGRRFIVEEI 378

BLAST of Sed0020171 vs. NCBI nr
Match: XP_020268430.1 (uncharacterized protein LOC109843879 [Asparagus officinalis])

HSP 1 Score: 60.1 bits (144), Expect = 1.5e-05
Identity = 41/126 (32.54%), Postives = 60/126 (47.62%), Query Frame = 0

Query: 3   VSDGDSEAYITMFDAAEHLTSCNVVEYFNDLSQVQNKESSEYYQNLVLAEDKKYYFLVRL 62
           V D   + Y+T+FD A  LT C+  EY +   +   +  S  YQ ++   DK+Y FLV++
Sbjct: 5   VKDHIDKTYVTLFDEARFLTGCSAEEYVDSFDEEGKEHLSPMYQKMMSCCDKEYLFLVKM 64

Query: 63  NKDGERDRARRQIVVQEICTINLM--------AEKKFPMNKNKGKNALEEVEN----ANN 117
           N+  E  R   +I  QEIC+ N           + K    K K   +L++  N     NN
Sbjct: 65  NRKDEEKRIEGRITAQEICSPNNFEPIECDEDEDSKDISLKRKSMTSLKKDMNKRKFMNN 124

BLAST of Sed0020171 vs. ExPASy TrEMBL
Match: A0A0A0KP46 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G526360 PE=4 SV=1)

HSP 1 Score: 71.2 bits (173), Expect = 3.1e-09
Identity = 34/58 (58.62%), Postives = 44/58 (75.86%), Query Frame = 0

Query: 1  MIVSDGDSEAYITMFDAAEHLTSCNVVEYFNDLSQVQNKESSEYYQNLVLAEDKKYYF 59
          + +SDGD + YIT+FDA+++L  C+V EY+ DL QV  KE S+ YQNLVL EDKKY F
Sbjct: 4  LTISDGDDKTYITIFDASKYLIGCSVTEYYKDL-QVYKKEKSKLYQNLVLCEDKKYCF 60

BLAST of Sed0020171 vs. ExPASy TrEMBL
Match: A0A1J6IT36 (Rep_fac-A_C domain-containing protein OS=Nicotiana attenuata OX=49451 GN=A4A49_30234 PE=4 SV=1)

HSP 1 Score: 61.6 bits (148), Expect = 2.5e-06
Identity = 41/119 (34.45%), Postives = 68/119 (57.14%), Query Frame = 0

Query: 3   VSDGDSEAYITMFDAAEHLTSCNVVEYFNDLSQVQNKESSEYYQNLVLAEDKKYYFLVRL 62
           VS G+    + +FDAAE+L  C+V EY   +     KE S YY+ LVL++DK++ FLV++
Sbjct: 194 VSAGERRVRVILFDAAEYLFGCDVKEYIQSI--CTKKEESNYYRKLVLSKDKEFIFLVKI 253

Query: 63  ---NKDGERDRARRQI-VVQEICTINLMAE-KKFPMNKNKGKNALEEVENANNKKAKIE 117
              NK+  R    ++I   Q++ TI ++ E K   + + + K   E+    +NK+ K+E
Sbjct: 254 DNKNKNSGRILIAQEIHEFQDVATIKVLDEDKPAKIRRKRSKRNNEDQRPISNKRIKVE 310

BLAST of Sed0020171 vs. ExPASy TrEMBL
Match: A0A1S4AI89 (replication protein A 70 kDa DNA-binding subunit B-like OS=Nicotiana tabacum OX=4097 GN=LOC107797997 PE=4 SV=1)

HSP 1 Score: 61.2 bits (147), Expect = 3.3e-06
Identity = 30/78 (38.46%), Postives = 49/78 (62.82%), Query Frame = 0

Query: 3   VSDGDSEAYITMFDAAEHLTSCNVVEYFNDLSQVQNKESSEYYQNLVLAEDKKYYFLVRL 62
           V D     Y+T+F++  +L  C+V  Y   +S  QNKE S++Y+ LVL+ +KK+ FLV++
Sbjct: 303 VFDKKERYYVTLFESTRYLLGCDVTTYIQSIS--QNKEESKFYRKLVLSLEKKFTFLVKI 362

Query: 63  NKDGERDRARRQIVVQEI 81
           +     DR  R+ +V+EI
Sbjct: 363 DSKNGGDRDGRRFIVEEI 378

BLAST of Sed0020171 vs. ExPASy TrEMBL
Match: A0A1S4CG46 (replication protein A 70 kDa DNA-binding subunit A-like OS=Nicotiana tabacum OX=4097 GN=LOC107818567 PE=4 SV=1)

HSP 1 Score: 59.3 bits (142), Expect = 1.2e-05
Identity = 28/85 (32.94%), Postives = 50/85 (58.82%), Query Frame = 0

Query: 3   VSDGDSEAYITMFDAAEHLTSCNVVEYFNDLSQVQNKESSEYYQNLVLAEDKKYYFLVRL 62
           V D     Y+T+F++  +L  C+V  Y   +S  Q KE S++Y+ LVL+ +K++ FLV++
Sbjct: 114 VFDKKERCYVTLFESTRYLLGCDVTTYIQSIS--QKKEESKFYRKLVLSREKEFTFLVKI 173

Query: 63  NKDGERDRARRQIVVQEICTINLMA 88
           +     DR  R+ + +EI  +  +A
Sbjct: 174 DSKNGGDRDGRRFIAEEIQEVEKIA 196

BLAST of Sed0020171 vs. ExPASy TrEMBL
Match: A0A5P1F312 (Uncharacterized protein OS=Asparagus officinalis OX=4686 GN=A4U43_C04F3900 PE=3 SV=1)

HSP 1 Score: 58.5 bits (140), Expect = 2.1e-05
Identity = 31/78 (39.74%), Postives = 46/78 (58.97%), Query Frame = 0

Query: 3   VSDGDSEAYITMFDAAEHLTSCNVVEYFNDLSQVQNKESSEYYQNLVLAEDKKYYFLVRL 62
           V+DG   AY+T+FD AE L  C  + Y     ++   ESSE YQ +    +K+Y FLV++
Sbjct: 561 VNDGTDTAYVTLFDEAEILICCTAIAYV----EMFEDESSECYQKMKSCLEKEYVFLVKI 620

Query: 63  NKDGERDRARRQIVVQEI 81
           N+  E +R  R I+ QE+
Sbjct: 621 NEKEESNRKARCIIAQEV 634

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KGN51395.16.5e-0958.62hypothetical protein Csa_008714 [Cucumis sativus][more]
OIT08014.15.1e-0634.45hypothetical protein A4A49_30234 [Nicotiana attenuata][more]
XP_020242412.15.1e-0633.33replication protein A 70 kDa DNA-binding subunit B-like [Asparagus officinalis][more]
XP_016476407.16.7e-0638.46PREDICTED: replication protein A 70 kDa DNA-binding subunit B-like [Nicotiana ta... [more]
XP_020268430.11.5e-0532.54uncharacterized protein LOC109843879 [Asparagus officinalis][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0KP463.1e-0958.62Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G526360 PE=4 SV=1[more]
A0A1J6IT362.5e-0634.45Rep_fac-A_C domain-containing protein OS=Nicotiana attenuata OX=49451 GN=A4A49_3... [more]
A0A1S4AI893.3e-0638.46replication protein A 70 kDa DNA-binding subunit B-like OS=Nicotiana tabacum OX=... [more]
A0A1S4CG461.2e-0532.94replication protein A 70 kDa DNA-binding subunit A-like OS=Nicotiana tabacum OX=... [more]
A0A5P1F3122.1e-0539.74Uncharacterized protein OS=Asparagus officinalis OX=4686 GN=A4U43_C04F3900 PE=3 ... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 98..117

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Sed0020171.1Sed0020171.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0009987 cellular process