Sed0020165 (gene) Chayote v1

Overview
NameSed0020165
Typegene
OrganismSechium edule (Chayote v1)
Descriptionarabinogalactan peptide 13-like
LocationLG12: 27789488 .. 27790157 (-)
RNA-Seq ExpressionSed0020165
SyntenySed0020165
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
TATATATTGTGTGTGTGGGGCTATAAATACCAGCAAACCCACCATCATTACCCTTGACAAAAGCCTCTGTTTCAAAAAAAAAAATCCAAGAGAAACCCATTTGAAAGCTCAAATCTTTTAGAAGAAAAAAAAAATCAAAGGTTTAAGCTAATTTGTTTGGTTTTGATTCATTCATCAATGGAGGCAATGAAGTTTCAAGTTTTGATATTGGTGACAATTGTTGTGGCTTTGTCATCCTCCATTGTTGCAGCTCAACAAGCTCCTGCTCCAAGCCCCCATTCTGATGCTCCAACTTCTTCTCTCCCAACTTTAATGGCTTCTCTTGCTCCTCTTCTTCTTCTTCCCTTTTTCCTCTAAATTTCATCTTCTCTTTTAATAAATTTCTCTCACCATTTATTATTGTAACTTTCTATGGATTATATATCTATTATTTGTCTTGTAAGTCTAAACCAATTTTCTTCATATTTTTTTTCTCTAGAAATTATGGAATATCTATGAAGGGAAAGATTGGAGAGATGGGTTGGTGTTCTTTTTTAAGGATTTATTAGGGCTTGTTGATTGTGAGGTGATGATTCAATTTGTTTTTGGTGTGATTTTGGATTATTAATTTTATGTATATTTTCAATGTTTCATGCCTATGTTTTTACTCTCTAATTATCTTTTGATATCA

mRNA sequence

TATATATTGTGTGTGTGGGGCTATAAATACCAGCAAACCCACCATCATTACCCTTGACAAAAGCCTCTGTTTCAAAAAAAAAAATCCAAGAGAAACCCATTTGAAAGCTCAAATCTTTTAGAAGAAAAAAAAAATCAAAGGTTTAAGCTAATTTGTTTGGTTTTGATTCATTCATCAATGGAGGCAATGAAGTTTCAAGTTTTGATATTGGTGACAATTGTTGTGGCTTTGTCATCCTCCATTGTTGCAGCTCAACAAGCTCCTGCTCCAAGCCCCCATTCTGATGCTCCAACTTCTTCTCTCCCAACTTTAATGGCTTCTCTTGCTCCTCTTCTTCTTCTTCCCTTTTTCCTCTAAATTTCATCTTCTCTTTTAATAAATTTCTCTCACCATTTATTATTGTAACTTTCTATGGATTATATATCTATTATTTGTCTTGTAAGTCTAAACCAATTTTCTTCATATTTTTTTTCTCTAGAAATTATGGAATATCTATGAAGGGAAAGATTGGAGAGATGGGTTGGTGTTCTTTTTTAAGGATTTATTAGGGCTTGTTGATTGTGAGGTGATGATTCAATTTGTTTTTGGTGTGATTTTGGATTATTAATTTTATGTATATTTTCAATGTTTCATGCCTATGTTTTTACTCTCTAATTATCTTTTGATATCA

Coding sequence (CDS)

ATGGAGGCAATGAAGTTTCAAGTTTTGATATTGGTGACAATTGTTGTGGCTTTGTCATCCTCCATTGTTGCAGCTCAACAAGCTCCTGCTCCAAGCCCCCATTCTGATGCTCCAACTTCTTCTCTCCCAACTTTAATGGCTTCTCTTGCTCCTCTTCTTCTTCTTCCCTTTTTCCTCTAA

Protein sequence

MEAMKFQVLILVTIVVALSSSIVAAQQAPAPSPHSDAPTSSLPTLMASLAPLLLLPFFL
Homology
[Close]
BLAST of Sed0020165 vs. NCBI nr
Match: XP_022988237.1 (arabinogalactan peptide 13-like [Cucurbita maxima])

HSP 1 Score: 62.4 bits (150), Expect = 1.5e-06
Identity = 45/61 (73.77%), Postives = 50/61 (81.97%), Query Frame = 0 

Query: 1  MEAMKFQVLILVTIV--VALSSSIVAAQQAPAPSPHSDAPTSSLPTLMASLAPLLLLPFF 60
          MEAMKFQ L+L  +V  +ALSS+IVAAQ+APAPSP SDAP  SLPTLMASLAP L L FF
Sbjct: 1  MEAMKFQALMLAMVVGAMALSSTIVAAQEAPAPSPASDAPL-SLPTLMASLAP-LALGFF 59

[Close]
BLAST of Sed0020165 vs. NCBI nr
Match: KAG7022018.1 (Arabinogalactan peptide 14, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 62.4 bits (150), Expect = 1.5e-06
Identity = 44/61 (72.13%), Postives = 50/61 (81.97%), Query Frame = 0 

Query: 1  MEAMKFQVLI--LVTIVVALSSSIVAAQQAPAPSPHSDAPTSSLPTLMASLAPLLLLPFF 60
          M AMKF+ L+  +V  V+A SSSIVAAQ+APAPSP SDAP  SLPTLMASLAP L+LPFF
Sbjct: 1  MAAMKFEALMVAMVVAVMAFSSSIVAAQEAPAPSPASDAPL-SLPTLMASLAP-LVLPFF 59

[Close]
BLAST of Sed0020165 vs. NCBI nr
Match: KAG7023913.1 (Arabinogalactan peptide 14, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 60.1 bits (144), Expect = 7.5e-06
Identity = 44/61 (72.13%), Postives = 50/61 (81.97%), Query Frame = 0 

Query: 1  MEAMKFQVLILVTIV--VALSSSIVAAQQAPAPSPHSDAPTSSLPTLMASLAPLLLLPFF 60
          MEAMKFQ L+L  +V  +ALSS+IVAAQ+APAPSP SDA + SLPTLMASLAP L L FF
Sbjct: 1  MEAMKFQALMLAMVVGAMALSSTIVAAQEAPAPSPASDA-SLSLPTLMASLAP-LALGFF 59

[Close]
BLAST of Sed0020165 vs. NCBI nr
Match: XP_038879727.1 (arabinogalactan protein 13-like [Benincasa hispida])

HSP 1 Score: 58.9 bits (141), Expect = 1.7e-05
Identity = 44/63 (69.84%), Postives = 50/63 (79.37%), Query Frame = 0 

Query: 1  MEAMKFQVLILVTIVVAL----SSSIVAAQQAPAPSPHSDAPTSSLPTLMASLAPLLLLP 60
          MEAMK Q L+++ +VV L    SSSIVAAQ+APAPSP SDAP  SLPTLMASLAP L+L 
Sbjct: 1  MEAMKSQALMMMIMVVVLMAFSSSSIVAAQEAPAPSPASDAPI-SLPTLMASLAP-LVLG 60

[Close]
BLAST of Sed0020165 vs. ExPASy TrEMBL
Match: A0A6J1JCI6 (arabinogalactan peptide 13-like OS=Cucurbita maxima OX=3661 GN=LOC111485538 PE=3 SV=1)

HSP 1 Score: 62.4 bits (150), Expect = 7.4e-07
Identity = 45/61 (73.77%), Postives = 50/61 (81.97%), Query Frame = 0 

Query: 1  MEAMKFQVLILVTIV--VALSSSIVAAQQAPAPSPHSDAPTSSLPTLMASLAPLLLLPFF 60
          MEAMKFQ L+L  +V  +ALSS+IVAAQ+APAPSP SDAP  SLPTLMASLAP L L FF
Sbjct: 1  MEAMKFQALMLAMVVGAMALSSTIVAAQEAPAPSPASDAPL-SLPTLMASLAP-LALGFF 59

The following BLAST results are available for this feature:
BLAST of Sed0020165 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022988237.11.5e-0673.77arabinogalactan peptide 13-like [Cucurbita maxima][more]
KAG7022018.11.5e-0672.13Arabinogalactan peptide 14, partial [Cucurbita argyrosperma subsp. argyrosperma][more]
KAG7023913.17.5e-0672.13Arabinogalactan peptide 14, partial [Cucurbita argyrosperma subsp. argyrosperma][more]
XP_038879727.11.7e-0569.84arabinogalactan protein 13-like [Benincasa hispida][more]
BLAST of Sed0020165 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Sed0020165 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1JCI67.4e-0773.77arabinogalactan peptide 13-like OS=Cucurbita maxima OX=3661 GN=LOC111485538 PE=3... [more]
BLAST of Sed0020165 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Sed0020165.1Sed0020165.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0031225 anchored component of membrane