Sed0020163 (gene) Chayote v1

Overview


Name	Sed0020163
Type	gene
Organism	Sechium edule (Chayote v1)
Description	E3 ubiquitin-protein ligase
Location	LG03: 1669336 .. 1673717 (-)
RNA-Seq Expression	Sed0020163
Synteny	Sed0020163

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GATAAATGATATGATCAGAATATTTGAGCCCCGTTCTATCCTCCAACCAAACCCCAATTTCATTCATAGCAAAGAGAGGCACCGCAACGACAGATTCCTAAAAGAAAAAGGAAAAAAAAAAATTGCAGCTTTAATTTCGCGGGATTCGTAGCTTTCGATTCATCGCCTCCAATTCCCTTTTCCAATCCTAACGCCCCTTAAAACGCGTAATCTCGATTTAGCTTCAAATCCCAAATATCTGTGTTCGTGATTTTTTGTTTAAATCCCAAAACGCGCATGTTTATAATTTCCGCATATTCTCCCAATTTCCATCCCAAGATCACTTCACTGCTCTCTTAAGGTACTTCTATTGGAATCCTTTTTCGTGTAATCGGTTGAGGGGTACCCTGTTGATCGTCCCAATTTTGATTGTTCTGTACTGGGTTTCTTTGTTTTTTCATGATTTGTATGATTTTGCCGCCCGATCGCCTATTTGTTGTGTTTTTTCATATGGGGTTTTCGTTTTGTTTTGAATGGCGTTTTCTCTTGTTCTGTGCCGTTTGTTCTTTAATGGGTACACATTGGATGAGTTGTGTGTATGTTCTGGGTGATGATGATCAGCTTGGTTTGCTATTGATGTTTTTTTGGTATTTTGTTTCATTATCATTAAGTAAAGAATCCGTGTTCTCAGAGGTGACCCAGAAAAAAAAAAGTCAATTTGGTGAGATGAGTGGGTAACCCTTTGGATTGTTGACCGAAGATTGTGGCATTTGATTAACCCTTTTGTTTATTTTTGGCTGTTTCGACTTTTTTTTTGTCATTGTTGTTATCGTGGCTTTGGATTGCTGCCGACAGATTCTTGTTCCTTGGTTTAATACATGATCTTTGTAGGAATTGTTATTTACTTCCTTTCTAGGTGATTGCATTGACATTTATGTTACCATAGTTGCTTTGAGGATACCGCCTTTGGGACCTCATCTTATTGATAGTTTTACTGAACAGAGGCTGCTTATTTTACAGGTGAAAATTATCAGTGTAAGGAATCCAGTTAACTCGAATTGAAGAGGGAGAGTACTGGTTCGTGGAGGCATTGCTACTTCTGCGAGCTTATGTACTCTCGTCTCCATTTGCCAAGAACTCCCCATTTGAATGCAAGTAAATAGCTAAATTAGTCTATCTGTTGGATTGGGGTTTATAAAGAGATTGGTACTCGGTTGGAGTTGGCACAATGGGTGCTGTTTGCTGCTGTTTGAGTATGGAAGATTTTGAAGACTATGTCAATCCTAATAGTTCAGCATATAGGAATTGCGCCTGTCTTAGCTGCTTCATTCAAAATTTCTTAAATGCAGTAAGCCCCATATTCCTTGCATTATATTTCATGCTAGTTTGCGATTTGTCACTATGAAGGATGGAAATACAATATTCATTATATCAACAATGGGATTTTGTTTGAATGTTAATATTGGTGAAGATTTGAAGATTTTTTTTGATAGTTAGAAACAAAATATTTTTCAACAACCAAATGTGCATTACTTGGCCTTGATACCCACAGATATATTTGACTACTATACTCTTTCATATTTTGAAGTTTATATGGTATTCAAGTATAGAGTTTAAGTATGGCATATTATTGCATTGTTTGTGTGTCCTTCCATATTTCTACCTTTATAATGAGTGGGTAAAATAAGTCACTGACTTTATTCTTTAGATAATTGCATAACTCTGTCTGCCCTCTTATTTTCTTTTCTCAAGTACACATCGGTTTTTCGAAGAGGGGAAGTGCATCCTATCTCTTCATCAATTCAAGGGGCAACGTCTATGAATTCTGCAGCATCAATAGATAATTCTTTATCTGAAATATACCGCTCACCCCCAAGGCCATTGCCATATGATGCTGACCCCAGATACATTCGCTTGCAGCGGGATGGATTGATTTCTAGGCGAGAGAAGGGGTCAAGCCATTTACATGAGGAGTCAGAACCTCTCAGAAGTGAAGTAGATACAGATTCAGATTCTTTGGACTCGGCAGGCAAATGGAAGGGATCTTCTTGTCTTGAGGAATCTAAAGAAAATCTTGGCAAGTCATCTCTGAAGTTCCCAACAACTAAACCTCCCACCGGAACTTGGTATTCTTGTACATCCTCAGAAGAAGACGAGGATGTCTGCCCGACGTGTCTTGAAGGTTGATTATTTATTAGCTTCACTTTATTATAGTTTTTATTGCTTGTGAAATCTATGGTTTTGGCCCTCAACATTCTTGTTTTTTGAGCTTATGGGTGACAAACGTGTTACTGATCCACACATTTTTTAACAGCCAAATTTTCTTTCTGGTCGCTAAATTTTCTTATTTTCCTAGCAGAGTATACTTCAGAGAATCCCAAGATAGTGACAAAATGCTCTCATCACTTTCACCTTGGATGTATCTATGAGTGGATGGAGAGAAGTGATAACTGTCCAGTTTGTGGCAAGGTATGCTTCTTTTTCTTCATCATATCATATAAACTTAGTCAATCACTATCTCAAAGCCACCCTTTTGTTTGTGTAGATTGATGTTTGGATTTTTTAGGTTCTGCAAGTTCTGTGTTTCATAAGCGTTTCTATTACTTTACAAAGAAAAAAACAAGTGTTCCTATTATTTGGGAAGTTTAAGATTGTCTGACTATTGATTTGAATACAAATAGAATTTTTTTTTGTCATTTTAGTATGGGATGGGCACAAGGACCATTTCGAATTTGCACGATCATCGGGGTAACATATGGTGTAATAATGATCTATTCATTTATGCTATCTACTATTAGACTCTTAGTCATATTTGTTTGGGATCATTAGATTAAGTTATGCCGACTTCAGAATATTGCCTATCAGAAAACTTGTAGAATTAGAAGTTTAAGAGAACACGTTATCTTGTCCAATTTATCAATTCTAACCAGTTGAAAATCATATTCATCTTGTCCAATATTTCTTACTGTGAATATGATTTTCAACTGGTGTTTGAACTGATAAATAGGACAAGAAGCAATTGTCTAGAAACCCATATTGAAGCCACTGTGAAATGGAGGGTATTTTTTTGTTGTAGAATTATTAAGGTTTTTTTCTCCTGTAACGACCCTGCCTCATTTTCTGAATCTTTTATTTGGCATGAGGAGCGTATTTTTCTTGTCTGATAGTTTTCTTTCTTACATATTAGTTATGTTGTTTGGTGTTTGCTACCATATTTACAAGGATGCATTAAATAGTTAGCTGTTTTCTAAGGATCAAATTTGGTTTTATTAATTTTTTTTTTTGGCATGAGCCATTGTTTAGGTATCAATTCTTTTTCTGCTAAGGAAATTGTTCATAAGTTGAAGTAAATGATTAGCGTATGGAGAATCTTCGTTTACTTGTCATAAACTGTAATTAGACTAACCATTGGAGGTTCTAGATTATAAGTATTTATGTAGGTTTGTTAACTCATCATCACCTGTTCGAATTCAAGATCCATTCTGTTTTTAAGTTCTTTAGTATTTAGAAATTTCTAGTTTTTTTTTAAATAACTTTATTGCTAACTTAGCCCCCTATCATTTGAAGATAAAGGCTAGAGATTCTTGTTAATTTATCTTCCATAATGTAATGGTTTGGTTACTGTTTTCTAAAAAGCAAGAAGTCTGGAATCTTGTTGAAGTGGTCAAGAGGTTATGGGTCGATTCTTTTTTTCGTTTCAGCACCCACCTTGCAGAGTTAATAAATCCATGATGGTTATTTATTTAGAAATTAATTTCCTCCGAATTTTTTTTTATACTAAAAATGTTGTTGGGTCTAGTGGTTTGTGTCCTGAGAATAGTCGAAATATATTCTAAGGAGTTTAAGTTGCTCGAATTCTGCAGAGTTAACATGTATTTAATCTGAGTTCGAGTTCTGAGTTTTTTGATGAGCTGATTGACACTAGCATAGATTATTTGATTTTTTAACTGGGAAGGAAACTGGCTTGACATGTTTGGATGTGTTTCATTAACTTCTATTTCATACCACTATTTTAATGTCTTAGGTAATGGCATTCGACGAAACAACTTGATGTTCGCATCACGGACGAAGCCAGTAGACCGTGGGGGATAACCAACAGGAACGTGGTCATTTGTGAATATTTGCAGGATAAGATTTTTCAACCATAGTAAATATTATGGATGAAAGTGTAATATAAACCAAGGTTGGATCCATCTATTTCCTCTCTCTCTTTTCCTCATTTTGAAAGATTATTTTCTAAGTTATACAGTTGAAACTTTTGTTTCACCAAAATATCATCTTATAGGGGAAGAAAAATAGGTGTTGTGAATGACAGAAATCTTTTCATTTCATGTAATTGGTGTCTCTACTCTACCTGTATTCTTTCCTTTTCGTTAAGTGAAATATGGTCACACCTTTCAATC

mRNA sequence

GATAAATGATATGATCAGAATATTTGAGCCCCGTTCTATCCTCCAACCAAACCCCAATTTCATTCATAGCAAAGAGAGGCACCGCAACGACAGATTCCTAAAAGAAAAAGGAAAAAAAAAAATTGCAGCTTTAATTTCGCGGGATTCGTAGCTTTCGATTCATCGCCTCCAATTCCCTTTTCCAATCCTAACGCCCCTTAAAACGCGTAATCTCGATTTAGCTTCAAATCCCAAATATCTGTGTTCGTGATTTTTTGTTTAAATCCCAAAACGCGCATGTTTATAATTTCCGCATATTCTCCCAATTTCCATCCCAAGATCACTTCACTGCTCTCTTAAGGTGAAAATTATCAGTGTAAGGAATCCAGTTAACTCGAATTGAAGAGGGAGAGTACTGGTTCGTGGAGGCATTGCTACTTCTGCGAGCTTATGTACTCTCGTCTCCATTTGCCAAGAACTCCCCATTTGAATGCAAGTAAATAGCTAAATTAGTCTATCTGTTGGATTGGGGTTTATAAAGAGATTGGTACTCGGTTGGAGTTGGCACAATGGGTGCTGTTTGCTGCTGTTTGAGTATGGAAGATTTTGAAGACTATGTCAATCCTAATAGTTCAGCATATAGGAATTGCGCCTGTCTTAGCTGCTTCATTCAAAATTTCTTAAATGCATACACATCGGTTTTTCGAAGAGGGGAAGTGCATCCTATCTCTTCATCAATTCAAGGGGCAACGTCTATGAATTCTGCAGCATCAATAGATAATTCTTTATCTGAAATATACCGCTCACCCCCAAGGCCATTGCCATATGATGCTGACCCCAGATACATTCGCTTGCAGCGGGATGGATTGATTTCTAGGCGAGAGAAGGGGTCAAGCCATTTACATGAGGAGTCAGAACCTCTCAGAAGTGAAGTAGATACAGATTCAGATTCTTTGGACTCGGCAGGCAAATGGAAGGGATCTTCTTGTCTTGAGGAATCTAAAGAAAATCTTGGCAAGTCATCTCTGAAGTTCCCAACAACTAAACCTCCCACCGGAACTTGGTATTCTTGTACATCCTCAGAAGAAGACGAGGATGTCTGCCCGACGTGTCTTGAAGAGTATACTTCAGAGAATCCCAAGATAGTGACAAAATGCTCTCATCACTTTCACCTTGGATGTATCTATGAGTGGATGGAGAGAAGTGATAACTGTCCAGTTTGTGGCAAGGTAATGGCATTCGACGAAACAACTTGATGTTCGCATCACGGACGAAGCCAGTAGACCGTGGGGGATAACCAACAGGAACGTGGTCATTTGTGAATATTTGCAGGATAAGATTTTTCAACCATAGTAAATATTATGGATGAAAGTGTAATATAAACCAAGGTTGGATCCATCTATTTCCTCTCTCTCTTTTCCTCATTTTGAAAGATTATTTTCTAAGTTATACAGTTGAAACTTTTGTTTCACCAAAATATCATCTTATAGGGGAAGAAAAATAGGTGTTGTGAATGACAGAAATCTTTTCATTTCATGTAATTGGTGTCTCTACTCTACCTGTATTCTTTCCTTTTCGTTAAGTGAAATATGGTCACACCTTTCAATC

Coding sequence (CDS)

ATGGGTGCTGTTTGCTGCTGTTTGAGTATGGAAGATTTTGAAGACTATGTCAATCCTAATAGTTCAGCATATAGGAATTGCGCCTGTCTTAGCTGCTTCATTCAAAATTTCTTAAATGCATACACATCGGTTTTTCGAAGAGGGGAAGTGCATCCTATCTCTTCATCAATTCAAGGGGCAACGTCTATGAATTCTGCAGCATCAATAGATAATTCTTTATCTGAAATATACCGCTCACCCCCAAGGCCATTGCCATATGATGCTGACCCCAGATACATTCGCTTGCAGCGGGATGGATTGATTTCTAGGCGAGAGAAGGGGTCAAGCCATTTACATGAGGAGTCAGAACCTCTCAGAAGTGAAGTAGATACAGATTCAGATTCTTTGGACTCGGCAGGCAAATGGAAGGGATCTTCTTGTCTTGAGGAATCTAAAGAAAATCTTGGCAAGTCATCTCTGAAGTTCCCAACAACTAAACCTCCCACCGGAACTTGGTATTCTTGTACATCCTCAGAAGAAGACGAGGATGTCTGCCCGACGTGTCTTGAAGAGTATACTTCAGAGAATCCCAAGATAGTGACAAAATGCTCTCATCACTTTCACCTTGGATGTATCTATGAGTGGATGGAGAGAAGTGATAACTGTCCAGTTTGTGGCAAGGTAATGGCATTCGACGAAACAACTTGA

Protein sequence

MGAVCCCLSMEDFEDYVNPNSSAYRNCACLSCFIQNFLNAYTSVFRRGEVHPISSSIQGATSMNSAASIDNSLSEIYRSPPRPLPYDADPRYIRLQRDGLISRREKGSSHLHEESEPLRSEVDTDSDSLDSAGKWKGSSCLEESKENLGKSSLKFPTTKPPTGTWYSCTSSEEDEDVCPTCLEEYTSENPKIVTKCSHHFHLGCIYEWMERSDNCPVCGKVMAFDETT

Homology

[Close]

BLAST of Sed0020163 vs. NCBI nr
Match: XP_022954554.1 (E3 ubiquitin-protein ligase At3g02290 [Cucurbita moschata] >XP_022954561.1 E3 ubiquitin-protein ligase At3g02290 [Cucurbita moschata] >XP_022954569.1 E3 ubiquitin-protein ligase At3g02290 [Cucurbita moschata] >XP_023548844.1 E3 ubiquitin-protein ligase At3g02290 [Cucurbita pepo subsp. pepo] >XP_023548852.1 E3 ubiquitin-protein ligase At3g02290 [Cucurbita pepo subsp. pepo] >XP_023548861.1 E3 ubiquitin-protein ligase At3g02290 [Cucurbita pepo subsp. pepo] >XP_023548868.1 E3 ubiquitin-protein ligase At3g02290 [Cucurbita pepo subsp. pepo] >KAG6602542.1 E3 ubiquitin-protein ligase, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 426.0 bits (1094), Expect = 2.0e-115
Identity = 204/228 (89.47%), Postives = 213/228 (93.42%), Query Frame = 0


Query: 1   MGAVCCCLSMEDFEDYVNPNSSAYRNCACLSCFIQNFLNAYTSVFRRGEVHPISSSIQGA 60
           MGAVCCCLSM+DFEDYVNPNSS YRNC CLSCFIQNFLNAYT +FRRGEVHP+SSSIQGA
Sbjct: 1   MGAVCCCLSMDDFEDYVNPNSSVYRNCTCLSCFIQNFLNAYTLIFRRGEVHPVSSSIQGA 60

Query: 61  TSMNSAASIDNSLSEIYRSPPRPLPYDADPRYIRLQRDGLISRREKGSSHLHEESEPLRS 120
           TSM+SA+S DNSLSEIYRSPPRPLPYDADPRYIRLQRDGLISRREKGSSHLHEESEPLR 
Sbjct: 61  TSMSSASSTDNSLSEIYRSPPRPLPYDADPRYIRLQRDGLISRREKGSSHLHEESEPLRG 120

Query: 121 EVDTDSDSLDSAGKWKGSSCLEESKENLGKSSLKFPTTKPPTGTWYSCTSSEEDEDVCPT 180
           EVDTDSDSL SAGKW GS+CL+ESKENLGKSSLK P+TK  TG  Y+ TSS EDEDVCPT
Sbjct: 121 EVDTDSDSLGSAGKWNGSACLDESKENLGKSSLKIPSTKSTTGAGYAYTSS-EDEDVCPT 180

Query: 181 CLEEYTSENPKIVTKCSHHFHLGCIYEWMERSDNCPVCGKVMAFDETT 229
           CLEEYTSENPKIVTKC HHFHLGCIYEWMERSDNCPVCGKVMAFDETT
Sbjct: 181 CLEEYTSENPKIVTKCCHHFHLGCIYEWMERSDNCPVCGKVMAFDETT 227

[Close]

BLAST of Sed0020163 vs. NCBI nr
Match: XP_008459404.1 (PREDICTED: E3 ubiquitin-protein ligase At3g02290 [Cucumis melo])

HSP 1 Score: 424.5 bits (1090), Expect = 5.9e-115
Identity = 204/228 (89.47%), Postives = 213/228 (93.42%), Query Frame = 0


Query: 1   MGAVCCCLSMEDFEDYVNPNSSAYRNCACLSCFIQNFLNAYTSVFRRGEVHPISSSIQGA 60
           MGAVCCCLS+EDFEDYVNPNSS YRNC CLSCFIQ+FLNAYT +FRRGEVH +SSSIQGA
Sbjct: 1   MGAVCCCLSVEDFEDYVNPNSSVYRNCTCLSCFIQSFLNAYTLIFRRGEVHSVSSSIQGA 60

Query: 61  TSMNSAASIDNSLSEIYRSPPRPLPYDADPRYIRLQRDGLISRREKGSSHLHEESEPLRS 120
           TSMNS AS DNSLSE+YRSPPRPLPYDADPRYIRLQRDGLISRREKGSSHLHEESEPLRS
Sbjct: 61  TSMNSTASTDNSLSEMYRSPPRPLPYDADPRYIRLQRDGLISRREKGSSHLHEESEPLRS 120

Query: 121 EVDTDSDSLDSAGKWKGSSCLEESKENLGKSSLKFPTTKPPTGTWYSCTSSEEDEDVCPT 180
           EVDTDSDSL SAGKW GS+CLEESKENLGKSSLKFP+TK  +G  Y+ TSS EDEDVCPT
Sbjct: 121 EVDTDSDSLGSAGKWNGSACLEESKENLGKSSLKFPSTKSTSGLGYAYTSS-EDEDVCPT 180

Query: 181 CLEEYTSENPKIVTKCSHHFHLGCIYEWMERSDNCPVCGKVMAFDETT 229
           CLEEYTSENPKIVTKCSHHFHLGCIYEWMERSDNCPVCGK MAFDETT
Sbjct: 181 CLEEYTSENPKIVTKCSHHFHLGCIYEWMERSDNCPVCGKAMAFDETT 227

[Close]

BLAST of Sed0020163 vs. NCBI nr
Match: XP_022990150.1 (E3 ubiquitin-protein ligase At3g02290 isoform X1 [Cucurbita maxima] >XP_022990152.1 E3 ubiquitin-protein ligase At3g02290 isoform X1 [Cucurbita maxima] >XP_022990153.1 E3 ubiquitin-protein ligase At3g02290 isoform X1 [Cucurbita maxima] >XP_022990154.1 E3 ubiquitin-protein ligase At3g02290 isoform X1 [Cucurbita maxima])

HSP 1 Score: 423.3 bits (1087), Expect = 1.3e-114
Identity = 202/228 (88.60%), Postives = 213/228 (93.42%), Query Frame = 0


Query: 1   MGAVCCCLSMEDFEDYVNPNSSAYRNCACLSCFIQNFLNAYTSVFRRGEVHPISSSIQGA 60
           MGAVCCCLSM+DFEDYVNPNSS YRNC CLSCFIQNFLNAYT +FRRGEVHP+SSSIQGA
Sbjct: 1   MGAVCCCLSMDDFEDYVNPNSSVYRNCTCLSCFIQNFLNAYTLIFRRGEVHPVSSSIQGA 60

Query: 61  TSMNSAASIDNSLSEIYRSPPRPLPYDADPRYIRLQRDGLISRREKGSSHLHEESEPLRS 120
           TSM+SA+S DNSLSEIYRSPPRPLPYDADPRYIRLQRDGLISRREKGSSHLHEESEPLR 
Sbjct: 61  TSMSSASSTDNSLSEIYRSPPRPLPYDADPRYIRLQRDGLISRREKGSSHLHEESEPLRG 120

Query: 121 EVDTDSDSLDSAGKWKGSSCLEESKENLGKSSLKFPTTKPPTGTWYSCTSSEEDEDVCPT 180
           EVDTDS+SL SAGKW GS+CL+ESKENLGKSSLK P+TK  TG  Y+ TSS EDEDVCPT
Sbjct: 121 EVDTDSESLGSAGKWNGSACLDESKENLGKSSLKIPSTKSTTGAGYAYTSS-EDEDVCPT 180

Query: 181 CLEEYTSENPKIVTKCSHHFHLGCIYEWMERSDNCPVCGKVMAFDETT 229
           CLEEYTSENPKI+TKC HHFHLGCIYEWMERSDNCPVCGKVMAFDETT
Sbjct: 181 CLEEYTSENPKILTKCCHHFHLGCIYEWMERSDNCPVCGKVMAFDETT 227

[Close]

BLAST of Sed0020163 vs. NCBI nr
Match: XP_038889911.1 (E3 ubiquitin-protein ligase At3g02290 [Benincasa hispida])

HSP 1 Score: 422.9 bits (1086), Expect = 1.7e-114
Identity = 203/228 (89.04%), Postives = 213/228 (93.42%), Query Frame = 0


Query: 1   MGAVCCCLSMEDFEDYVNPNSSAYRNCACLSCFIQNFLNAYTSVFRRGEVHPISSSIQGA 60
           MGAVCCCLS+EDFEDYVNPNSS YRNC CLSCFIQ+FL+AYT +FRRGEVH +SSSIQG 
Sbjct: 1   MGAVCCCLSVEDFEDYVNPNSSVYRNCTCLSCFIQSFLSAYTLIFRRGEVHSVSSSIQGT 60

Query: 61  TSMNSAASIDNSLSEIYRSPPRPLPYDADPRYIRLQRDGLISRREKGSSHLHEESEPLRS 120
           TSMNS AS DNSLSE+YRSPPRPLPYDADPRYIRLQRDGLISRREKGSSHLHEESEPLRS
Sbjct: 61  TSMNSTASTDNSLSEMYRSPPRPLPYDADPRYIRLQRDGLISRREKGSSHLHEESEPLRS 120

Query: 121 EVDTDSDSLDSAGKWKGSSCLEESKENLGKSSLKFPTTKPPTGTWYSCTSSEEDEDVCPT 180
           +VDTDSDSL SAGKW GS+CLEESKENLGKSSLKFP+TK  TG  Y+ TSS EDEDVCPT
Sbjct: 121 DVDTDSDSLGSAGKWNGSACLEESKENLGKSSLKFPSTKSTTGLGYAYTSS-EDEDVCPT 180

Query: 181 CLEEYTSENPKIVTKCSHHFHLGCIYEWMERSDNCPVCGKVMAFDETT 229
           CLEEYTSENPKIVTKCSHHFHLGCIYEWMERSDNCPVCGKVMAFDETT
Sbjct: 181 CLEEYTSENPKIVTKCSHHFHLGCIYEWMERSDNCPVCGKVMAFDETT 227

[Close]

BLAST of Sed0020163 vs. NCBI nr
Match: XP_022134111.1 (E3 ubiquitin-protein ligase At3g02290 [Momordica charantia] >XP_022134112.1 E3 ubiquitin-protein ligase At3g02290 [Momordica charantia])

HSP 1 Score: 420.6 bits (1080), Expect = 8.5e-114
Identity = 200/228 (87.72%), Postives = 212/228 (92.98%), Query Frame = 0


Query: 1   MGAVCCCLSMEDFEDYVNPNSSAYRNCACLSCFIQNFLNAYTSVFRRGEVHPISSSIQGA 60
           MGAVCCCLS+ED+EDYVNPNSS YRNC CLSCFIQNFLNAYT +FRRGEVH +SSSIQG 
Sbjct: 1   MGAVCCCLSVEDYEDYVNPNSSLYRNCTCLSCFIQNFLNAYTLIFRRGEVHSVSSSIQGT 60

Query: 61  TSMNSAASIDNSLSEIYRSPPRPLPYDADPRYIRLQRDGLISRREKGSSHLHEESEPLRS 120
           TSMNS AS DNSLSE+YRSPPRPLPYDADPRYIRLQRDGLISRREKGSSHLHEESEPLRS
Sbjct: 61  TSMNSTASTDNSLSEMYRSPPRPLPYDADPRYIRLQRDGLISRREKGSSHLHEESEPLRS 120

Query: 121 EVDTDSDSLDSAGKWKGSSCLEESKENLGKSSLKFPTTKPPTGTWYSCTSSEEDEDVCPT 180
           EVD DSDSLD+ GKW GS+CL+ESKENLGKSSLKFP+TK  TG  Y+ TSS EDEDVCPT
Sbjct: 121 EVDADSDSLDTPGKWNGSACLDESKENLGKSSLKFPSTKSTTGVGYAYTSS-EDEDVCPT 180

Query: 181 CLEEYTSENPKIVTKCSHHFHLGCIYEWMERSDNCPVCGKVMAFDETT 229
           CLEEYTSENPKI+T+CSHHFHLGCIYEWMERSDNCPVCGKVMAFDETT
Sbjct: 181 CLEEYTSENPKIMTQCSHHFHLGCIYEWMERSDNCPVCGKVMAFDETT 227

[Close]

BLAST of Sed0020163 vs. ExPASy Swiss-Prot
Match: Q8LE94 (E3 ubiquitin-protein ligase At3g02290 OS=Arabidopsis thaliana OX=3702 GN=At3g02290 PE=2 SV=1)

HSP 1 Score: 270.4 bits (690), Expect = 1.9e-71
Identity = 141/234 (60.26%), Postives = 163/234 (69.66%), Query Frame = 0


Query: 1   MGAVCCCLSMEDFEDYVNPNSSAYRNCACLSCFIQNFLNAYTSVFRRGEVHPISSSIQGA 60
           MG V  C  +ED ++Y+NPNSS YRNC C+ C   NFLN Y SVFRRGE   + SS+Q  
Sbjct: 1   MGCVSSCFRVEDIDEYMNPNSSVYRNCPCIRCLAHNFLNLYISVFRRGETRSLPSSVQAT 60

Query: 61  TSMNSAASIDNSLSEIYRSPPRPLPYDADPRYIRLQRDGLISRREKGSSHLHEESEPLRS 120
            S+ S++S DN LSE +RS PRPLPYDADPRY R     L+SRREKGSSH HEE EPLRS
Sbjct: 61  ASITSSSSHDNFLSEAFRSTPRPLPYDADPRYFR----SLVSRREKGSSHSHEEVEPLRS 120

Query: 121 EVDTDSDSLDSAG-KW---KGSSCLEESKENL-GKSSLKF--PTTKPPTGTWYSCTSSEE 180
           + D DS+S    G KW   K +   ++SKE    KSSL+     +K       +     E
Sbjct: 121 DSDADSESFGVGGCKWANNKSTLSDKDSKEEYSSKSSLRILRSRSKSIMADSENMYILSE 180

Query: 181 DEDVCPTCLEEYTSENPKIVTKCSHHFHLGCIYEWMERSDNCPVCGKVMAFDET 228
           DEDVCPTCLEEYTSENPKIVTKCSHHFHL CIYEWMERS+NCPVCGKVM F+ET
Sbjct: 181 DEDVCPTCLEEYTSENPKIVTKCSHHFHLSCIYEWMERSENCPVCGKVMEFNET 230

[Close]

BLAST of Sed0020163 vs. ExPASy Swiss-Prot
Match: Q2HIJ8 (Probable E3 ubiquitin-protein ligase RHB1A OS=Arabidopsis thaliana OX=3702 GN=RHB1A PE=2 SV=1)

HSP 1 Score: 84.7 bits (208), Expect = 1.4e-15
Identity = 46/112 (41.07%), Postives = 65/112 (58.04%), Query Frame = 0


Query: 124 TDSDSLDSAGKWKGSSC-LEESKENLGKSSLKFPTTK---PPTGTWYSCTSS-----EED 183
           TDS+S+   G+  GSS     + E+LG+S  K   +     P  + +S         +E+
Sbjct: 78  TDSESI--KGRMSGSSFETLATCEDLGESDCKTLASSVILSPRKSDFSKHQGLKILVDEE 137

Query: 184 EDVCPTCLEEYTSENPKIVTKCSHHFHLGCIYEWMERSDNCPVCGKVMAFDE 227
           ED CP C E+Y  ENP++ TKC H FHL C+ EW+ERSD CP+C K + FD+
Sbjct: 138 EDCCPICFEDYDVENPRLTTKCEHEFHLSCLLEWIERSDRCPICDKEVVFDD 187

[Close]

BLAST of Sed0020163 vs. ExPASy Swiss-Prot
Match: Q93ZF6 (E3 ubiquitin-protein ligase AIRP1 OS=Arabidopsis thaliana OX=3702 GN=AIRP1 PE=1 SV=1)

HSP 1 Score: 78.6 bits (192), Expect = 1.0e-13
Identity = 40/95 (42.11%), Postives = 51/95 (53.68%), Query Frame = 0


Query: 141 LEESKENLGKSSLKFPTTKPPTGTWY--SCTSSE------EDEDVCPTCLEEYTSENPKI 200
           L  ++ N  ++S       P   TW+    T  E      E  D CP CLEEY  +NPK+
Sbjct: 59  LPRTQGNSSEASPGLTQVVPEKKTWHVDDLTDFELKKQYREAIDECPICLEEYEIDNPKL 118

Query: 201 VTKCSHHFHLGCIYEWMERSDNCPVCGKVMAFDET 228
           +TKC H FHL CI  WMERS+ CPVC K +   E+
Sbjct: 119 LTKCGHDFHLACILAWMERSEACPVCDKELVLTES 153

[Close]

BLAST of Sed0020163 vs. ExPASy Swiss-Prot
Match: Q4TU14 (E3 ubiquitin-protein ligase RHF1A OS=Arabidopsis thaliana OX=3702 GN=RHF1A PE=1 SV=1)

HSP 1 Score: 63.2 bits (152), Expect = 4.5e-09
Identity = 24/52 (46.15%), Postives = 34/52 (65.38%), Query Frame = 0


Query: 170 SSEED---EDVCPTCLEEYTSENPKIVTKCSHHFHLGCIYEWMERSDNCPVC 219
           +S++D   +D C  CLE +T ++P  VT C H +HL CI EW +RS  CP+C
Sbjct: 35  ASDDDNNTDDACSICLEPFTLQDPSTVTSCKHEYHLQCIIEWSQRSKECPIC 86

[Close]

BLAST of Sed0020163 vs. ExPASy Swiss-Prot
Match: Q9ZT42 (E3 ubiquitin-protein ligase RHF2A OS=Arabidopsis thaliana OX=3702 GN=RHF2A PE=2 SV=1)

HSP 1 Score: 62.4 bits (150), Expect = 7.7e-09
Identity = 21/54 (38.89%), Postives = 32/54 (59.26%), Query Frame = 0


Query: 175 EDVCPTCLEEYTSENPKIVTKCSHHFHLGCIYEWMERSDNCPVCGKVMAFDETT 229
           +D C  CLE +   +P  +T C H +HL CI EW +RS  CP+C + ++  + T
Sbjct: 30  DDACSICLESFCESDPSTLTSCKHEYHLQCILEWCQRSSQCPMCWQSISLKDPT 83

[Close]

BLAST of Sed0020163 vs. ExPASy TrEMBL
Match: A0A6J1GR85 (E3 ubiquitin-protein ligase At3g02290 OS=Cucurbita moschata OX=3662 GN=LOC111456789 PE=4 SV=1)

HSP 1 Score: 426.0 bits (1094), Expect = 9.8e-116
Identity = 204/228 (89.47%), Postives = 213/228 (93.42%), Query Frame = 0


Query: 1   MGAVCCCLSMEDFEDYVNPNSSAYRNCACLSCFIQNFLNAYTSVFRRGEVHPISSSIQGA 60
           MGAVCCCLSM+DFEDYVNPNSS YRNC CLSCFIQNFLNAYT +FRRGEVHP+SSSIQGA
Sbjct: 1   MGAVCCCLSMDDFEDYVNPNSSVYRNCTCLSCFIQNFLNAYTLIFRRGEVHPVSSSIQGA 60

Query: 61  TSMNSAASIDNSLSEIYRSPPRPLPYDADPRYIRLQRDGLISRREKGSSHLHEESEPLRS 120
           TSM+SA+S DNSLSEIYRSPPRPLPYDADPRYIRLQRDGLISRREKGSSHLHEESEPLR 
Sbjct: 61  TSMSSASSTDNSLSEIYRSPPRPLPYDADPRYIRLQRDGLISRREKGSSHLHEESEPLRG 120

Query: 121 EVDTDSDSLDSAGKWKGSSCLEESKENLGKSSLKFPTTKPPTGTWYSCTSSEEDEDVCPT 180
           EVDTDSDSL SAGKW GS+CL+ESKENLGKSSLK P+TK  TG  Y+ TSS EDEDVCPT
Sbjct: 121 EVDTDSDSLGSAGKWNGSACLDESKENLGKSSLKIPSTKSTTGAGYAYTSS-EDEDVCPT 180

Query: 181 CLEEYTSENPKIVTKCSHHFHLGCIYEWMERSDNCPVCGKVMAFDETT 229
           CLEEYTSENPKIVTKC HHFHLGCIYEWMERSDNCPVCGKVMAFDETT
Sbjct: 181 CLEEYTSENPKIVTKCCHHFHLGCIYEWMERSDNCPVCGKVMAFDETT 227

[Close]

BLAST of Sed0020163 vs. ExPASy TrEMBL
Match: A0A1S3CA28 (E3 ubiquitin-protein ligase At3g02290 OS=Cucumis melo OX=3656 GN=LOC103498549 PE=4 SV=1)

HSP 1 Score: 424.5 bits (1090), Expect = 2.8e-115
Identity = 204/228 (89.47%), Postives = 213/228 (93.42%), Query Frame = 0


Query: 1   MGAVCCCLSMEDFEDYVNPNSSAYRNCACLSCFIQNFLNAYTSVFRRGEVHPISSSIQGA 60
           MGAVCCCLS+EDFEDYVNPNSS YRNC CLSCFIQ+FLNAYT +FRRGEVH +SSSIQGA
Sbjct: 1   MGAVCCCLSVEDFEDYVNPNSSVYRNCTCLSCFIQSFLNAYTLIFRRGEVHSVSSSIQGA 60

Query: 61  TSMNSAASIDNSLSEIYRSPPRPLPYDADPRYIRLQRDGLISRREKGSSHLHEESEPLRS 120
           TSMNS AS DNSLSE+YRSPPRPLPYDADPRYIRLQRDGLISRREKGSSHLHEESEPLRS
Sbjct: 61  TSMNSTASTDNSLSEMYRSPPRPLPYDADPRYIRLQRDGLISRREKGSSHLHEESEPLRS 120

Query: 121 EVDTDSDSLDSAGKWKGSSCLEESKENLGKSSLKFPTTKPPTGTWYSCTSSEEDEDVCPT 180
           EVDTDSDSL SAGKW GS+CLEESKENLGKSSLKFP+TK  +G  Y+ TSS EDEDVCPT
Sbjct: 121 EVDTDSDSLGSAGKWNGSACLEESKENLGKSSLKFPSTKSTSGLGYAYTSS-EDEDVCPT 180

Query: 181 CLEEYTSENPKIVTKCSHHFHLGCIYEWMERSDNCPVCGKVMAFDETT 229
           CLEEYTSENPKIVTKCSHHFHLGCIYEWMERSDNCPVCGK MAFDETT
Sbjct: 181 CLEEYTSENPKIVTKCSHHFHLGCIYEWMERSDNCPVCGKAMAFDETT 227

[Close]

BLAST of Sed0020163 vs. ExPASy TrEMBL
Match: A0A6J1JPB8 (E3 ubiquitin-protein ligase At3g02290 isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111487128 PE=4 SV=1)

HSP 1 Score: 423.3 bits (1087), Expect = 6.3e-115
Identity = 202/228 (88.60%), Postives = 213/228 (93.42%), Query Frame = 0


Query: 1   MGAVCCCLSMEDFEDYVNPNSSAYRNCACLSCFIQNFLNAYTSVFRRGEVHPISSSIQGA 60
           MGAVCCCLSM+DFEDYVNPNSS YRNC CLSCFIQNFLNAYT +FRRGEVHP+SSSIQGA
Sbjct: 1   MGAVCCCLSMDDFEDYVNPNSSVYRNCTCLSCFIQNFLNAYTLIFRRGEVHPVSSSIQGA 60

Query: 61  TSMNSAASIDNSLSEIYRSPPRPLPYDADPRYIRLQRDGLISRREKGSSHLHEESEPLRS 120
           TSM+SA+S DNSLSEIYRSPPRPLPYDADPRYIRLQRDGLISRREKGSSHLHEESEPLR 
Sbjct: 61  TSMSSASSTDNSLSEIYRSPPRPLPYDADPRYIRLQRDGLISRREKGSSHLHEESEPLRG 120

Query: 121 EVDTDSDSLDSAGKWKGSSCLEESKENLGKSSLKFPTTKPPTGTWYSCTSSEEDEDVCPT 180
           EVDTDS+SL SAGKW GS+CL+ESKENLGKSSLK P+TK  TG  Y+ TSS EDEDVCPT
Sbjct: 121 EVDTDSESLGSAGKWNGSACLDESKENLGKSSLKIPSTKSTTGAGYAYTSS-EDEDVCPT 180

Query: 181 CLEEYTSENPKIVTKCSHHFHLGCIYEWMERSDNCPVCGKVMAFDETT 229
           CLEEYTSENPKI+TKC HHFHLGCIYEWMERSDNCPVCGKVMAFDETT
Sbjct: 181 CLEEYTSENPKILTKCCHHFHLGCIYEWMERSDNCPVCGKVMAFDETT 227

[Close]

BLAST of Sed0020163 vs. ExPASy TrEMBL
Match: A0A6J1BYQ7 (E3 ubiquitin-protein ligase At3g02290 OS=Momordica charantia OX=3673 GN=LOC111006466 PE=4 SV=1)

HSP 1 Score: 420.6 bits (1080), Expect = 4.1e-114
Identity = 200/228 (87.72%), Postives = 212/228 (92.98%), Query Frame = 0


Query: 1   MGAVCCCLSMEDFEDYVNPNSSAYRNCACLSCFIQNFLNAYTSVFRRGEVHPISSSIQGA 60
           MGAVCCCLS+ED+EDYVNPNSS YRNC CLSCFIQNFLNAYT +FRRGEVH +SSSIQG 
Sbjct: 1   MGAVCCCLSVEDYEDYVNPNSSLYRNCTCLSCFIQNFLNAYTLIFRRGEVHSVSSSIQGT 60

Query: 61  TSMNSAASIDNSLSEIYRSPPRPLPYDADPRYIRLQRDGLISRREKGSSHLHEESEPLRS 120
           TSMNS AS DNSLSE+YRSPPRPLPYDADPRYIRLQRDGLISRREKGSSHLHEESEPLRS
Sbjct: 61  TSMNSTASTDNSLSEMYRSPPRPLPYDADPRYIRLQRDGLISRREKGSSHLHEESEPLRS 120

Query: 121 EVDTDSDSLDSAGKWKGSSCLEESKENLGKSSLKFPTTKPPTGTWYSCTSSEEDEDVCPT 180
           EVD DSDSLD+ GKW GS+CL+ESKENLGKSSLKFP+TK  TG  Y+ TSS EDEDVCPT
Sbjct: 121 EVDADSDSLDTPGKWNGSACLDESKENLGKSSLKFPSTKSTTGVGYAYTSS-EDEDVCPT 180

Query: 181 CLEEYTSENPKIVTKCSHHFHLGCIYEWMERSDNCPVCGKVMAFDETT 229
           CLEEYTSENPKI+T+CSHHFHLGCIYEWMERSDNCPVCGKVMAFDETT
Sbjct: 181 CLEEYTSENPKIMTQCSHHFHLGCIYEWMERSDNCPVCGKVMAFDETT 227

[Close]

BLAST of Sed0020163 vs. ExPASy TrEMBL
Match: A0A0A0KSH8 (RING-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_5G642120 PE=4 SV=1)

HSP 1 Score: 417.5 bits (1072), Expect = 3.5e-113
Identity = 202/228 (88.60%), Postives = 211/228 (92.54%), Query Frame = 0


Query: 1   MGAVCCCLSMEDFEDYVNPNSSAYRNCACLSCFIQNFLNAYTSVFRRGEVHPISSSIQGA 60
           MGAVCCCLS+EDFEDYVNPNSS YRNC CLSCFIQ+FLNAYT +FRRGEVH +SSSIQGA
Sbjct: 1   MGAVCCCLSVEDFEDYVNPNSSVYRNCTCLSCFIQSFLNAYTLIFRRGEVHSVSSSIQGA 60

Query: 61  TSMNSAASIDNSLSEIYRSPPRPLPYDADPRYIRLQRDGLISRREKGSSHLHEESEPLRS 120
           TSMNS AS DNSLSE+YRSPPRPLPYDADPRYIRLQRDGLISRREKGSSHLHEESEPLRS
Sbjct: 61  TSMNSTASTDNSLSEMYRSPPRPLPYDADPRYIRLQRDGLISRREKGSSHLHEESEPLRS 120

Query: 121 EVDTDSDSLDSAGKWKGSSCLEESKENLGKSSLKFPTTKPPTGTWYSCTSSEEDEDVCPT 180
           EVDTDSDSL S GK  GS+CLEESKENLGKSSLKFP+TK  +G  Y+ TSS EDEDVCPT
Sbjct: 121 EVDTDSDSLGSGGKRNGSACLEESKENLGKSSLKFPSTKSTSGLGYAYTSS-EDEDVCPT 180

Query: 181 CLEEYTSENPKIVTKCSHHFHLGCIYEWMERSDNCPVCGKVMAFDETT 229
           CLEEYTSENPKIVTKCSHHFHLGCIYEWMERSDNCPVCGK MAFDETT
Sbjct: 181 CLEEYTSENPKIVTKCSHHFHLGCIYEWMERSDNCPVCGKAMAFDETT 227

[Close]

BLAST of Sed0020163 vs. TAIR 10
Match: AT3G02290.1 (RING/U-box superfamily protein )

HSP 1 Score: 270.4 bits (690), Expect = 1.3e-72
Identity = 141/234 (60.26%), Postives = 163/234 (69.66%), Query Frame = 0


Query: 1   MGAVCCCLSMEDFEDYVNPNSSAYRNCACLSCFIQNFLNAYTSVFRRGEVHPISSSIQGA 60
           MG V  C  +ED ++Y+NPNSS YRNC C+ C   NFLN Y SVFRRGE   + SS+Q  
Sbjct: 1   MGCVSSCFRVEDIDEYMNPNSSVYRNCPCIRCLAHNFLNLYISVFRRGETRSLPSSVQAT 60

Query: 61  TSMNSAASIDNSLSEIYRSPPRPLPYDADPRYIRLQRDGLISRREKGSSHLHEESEPLRS 120
            S+ S++S DN LSE +RS PRPLPYDADPRY R     L+SRREKGSSH HEE EPLRS
Sbjct: 61  ASITSSSSHDNFLSEAFRSTPRPLPYDADPRYFR----SLVSRREKGSSHSHEEVEPLRS 120

Query: 121 EVDTDSDSLDSAG-KW---KGSSCLEESKENL-GKSSLKF--PTTKPPTGTWYSCTSSEE 180
           + D DS+S    G KW   K +   ++SKE    KSSL+     +K       +     E
Sbjct: 121 DSDADSESFGVGGCKWANNKSTLSDKDSKEEYSSKSSLRILRSRSKSIMADSENMYILSE 180

Query: 181 DEDVCPTCLEEYTSENPKIVTKCSHHFHLGCIYEWMERSDNCPVCGKVMAFDET 228
           DEDVCPTCLEEYTSENPKIVTKCSHHFHL CIYEWMERS+NCPVCGKVM F+ET
Sbjct: 181 DEDVCPTCLEEYTSENPKIVTKCSHHFHLSCIYEWMERSENCPVCGKVMEFNET 230

[Close]

BLAST of Sed0020163 vs. TAIR 10
Match: AT5G15790.1 (RING/U-box superfamily protein )

HSP 1 Score: 267.3 bits (682), Expect = 1.1e-71
Identity = 131/231 (56.71%), Postives = 161/231 (69.70%), Query Frame = 0


Query: 1   MGAVCCCLSMEDFEDYVNPNSSAYRNCACLSCFIQNFLNAYTSVFRRGEVHPISSSIQGA 60
           MG V  C  ++DFEDY NP+SS  R+C C  C + NFLN Y S+FRRGE   + SS+Q  
Sbjct: 1   MGCVSSCFGVDDFEDYPNPSSSVNRSCPCPRCLVNNFLNLYISLFRRGETRSLPSSLQAT 60

Query: 61  -TSMNSAASIDNSLSEIYRSPPRPLPYDADPRYIRLQRDGLISRREKGSSHLHEESEPLR 120
             S+ ++ S DN +S  + S PRPLPYDADPRY R +RD L+SRR+KGSSH HEE+EPLR
Sbjct: 61  NVSIATSTSYDNFMSNTFHSTPRPLPYDADPRYFRSRRDSLVSRRDKGSSHSHEEAEPLR 120

Query: 121 SEVDTDSDSLDSAG-KWKGSSCL--EESKENLGKSSLKFPTTKPPTGTWYSCTSSEEDED 180
           S+ D DS+S    G KW     +  E+SKE   +SS +   ++  + +      + +DED
Sbjct: 121 SDADVDSESFSVEGSKWANKLIISGEDSKEEFSRSSRRILQSRTMSTSNEGLYITSDDED 180

Query: 181 VCPTCLEEYTSENPKIVTKCSHHFHLGCIYEWMERSDNCPVCGKVMAFDET 228
           VCPTCLEEY SENPKIVTKCSHHFHL CIYEWMERS+NCPVCGKVM F ET
Sbjct: 181 VCPTCLEEYISENPKIVTKCSHHFHLSCIYEWMERSENCPVCGKVMEFHET 231

[Close]

BLAST of Sed0020163 vs. TAIR 10
Match: AT5G15790.2 (RING/U-box superfamily protein )

HSP 1 Score: 267.3 bits (682), Expect = 1.1e-71
Identity = 131/231 (56.71%), Postives = 161/231 (69.70%), Query Frame = 0


Query: 1   MGAVCCCLSMEDFEDYVNPNSSAYRNCACLSCFIQNFLNAYTSVFRRGEVHPISSSIQGA 60
           MG V  C  ++DFEDY NP+SS  R+C C  C + NFLN Y S+FRRGE   + SS+Q  
Sbjct: 1   MGCVSSCFGVDDFEDYPNPSSSVNRSCPCPRCLVNNFLNLYISLFRRGETRSLPSSLQAT 60

Query: 61  -TSMNSAASIDNSLSEIYRSPPRPLPYDADPRYIRLQRDGLISRREKGSSHLHEESEPLR 120
             S+ ++ S DN +S  + S PRPLPYDADPRY R +RD L+SRR+KGSSH HEE+EPLR
Sbjct: 61  NVSIATSTSYDNFMSNTFHSTPRPLPYDADPRYFRSRRDSLVSRRDKGSSHSHEEAEPLR 120

Query: 121 SEVDTDSDSLDSAG-KWKGSSCL--EESKENLGKSSLKFPTTKPPTGTWYSCTSSEEDED 180
           S+ D DS+S    G KW     +  E+SKE   +SS +   ++  + +      + +DED
Sbjct: 121 SDADVDSESFSVEGSKWANKLIISGEDSKEEFSRSSRRILQSRTMSTSNEGLYITSDDED 180

Query: 181 VCPTCLEEYTSENPKIVTKCSHHFHLGCIYEWMERSDNCPVCGKVMAFDET 228
           VCPTCLEEY SENPKIVTKCSHHFHL CIYEWMERS+NCPVCGKVM F ET
Sbjct: 181 VCPTCLEEYISENPKIVTKCSHHFHLSCIYEWMERSENCPVCGKVMEFHET 231

[Close]

BLAST of Sed0020163 vs. TAIR 10
Match: AT5G38895.1 (RING/U-box superfamily protein )

HSP 1 Score: 263.5 bits (672), Expect = 1.6e-70
Identity = 128/229 (55.90%), Postives = 159/229 (69.43%), Query Frame = 0


Query: 1   MGAVCCCLSMEDFEDYVNPNSSAYRNCACLSCFIQNFLNAYTSVFRRGEVHPISSSIQGA 60
           MGA CCC  ++ FE YVNPN+S  RNC CL+CF+Q+F++ Y S+F RG +HPI S+++ A
Sbjct: 1   MGAFCCCFQVDLFESYVNPNTSITRNCPCLNCFLQSFMDLYASLFSRGGMHPIPSTVETA 60

Query: 61  TSMNSAASIDNSLSEIYRSPPRPLPYDADPRYIRLQRDGLISRREKGSSHLHEESEPLRS 120
           T MNS  ++D+SLS +Y SPP PLPYDADPRY R           KGSSH  EESEPLR 
Sbjct: 61  TVMNSTTALDDSLSSVYHSPPTPLPYDADPRYFRF---------VKGSSHSGEESEPLRG 120

Query: 121 EVDTDSDSL-DSAGKWKGSSCLEESKENLGKSSLKFPTTK--PPTGTWYSCTSSEEDEDV 180
           + +  S++L D   KW  S   + SKE   K S  F  +K  P    +Y   +  +DED+
Sbjct: 121 DTEMSSEALGDGGAKWSKSDSEDGSKEVYTKGSSTFTKSKTMPGIEVYY---ADSDDEDI 180

Query: 181 CPTCLEEYTSENPKIVTKCSHHFHLGCIYEWMERSDNCPVCGKVMAFDE 227
           CPTCL++YT ENPKI+TKCSHHFHL CIYEWMERS+ CPVCGKVMAFDE
Sbjct: 181 CPTCLDDYTLENPKIITKCSHHFHLSCIYEWMERSETCPVCGKVMAFDE 217

[Close]

BLAST of Sed0020163 vs. TAIR 10
Match: AT5G38895.3 (RING/U-box superfamily protein )

HSP 1 Score: 263.5 bits (672), Expect = 1.6e-70
Identity = 128/229 (55.90%), Postives = 159/229 (69.43%), Query Frame = 0


Query: 1   MGAVCCCLSMEDFEDYVNPNSSAYRNCACLSCFIQNFLNAYTSVFRRGEVHPISSSIQGA 60
           MGA CCC  ++ FE YVNPN+S  RNC CL+CF+Q+F++ Y S+F RG +HPI S+++ A
Sbjct: 106 MGAFCCCFQVDLFESYVNPNTSITRNCPCLNCFLQSFMDLYASLFSRGGMHPIPSTVETA 165

Query: 61  TSMNSAASIDNSLSEIYRSPPRPLPYDADPRYIRLQRDGLISRREKGSSHLHEESEPLRS 120
           T MNS  ++D+SLS +Y SPP PLPYDADPRY R           KGSSH  EESEPLR 
Sbjct: 166 TVMNSTTALDDSLSSVYHSPPTPLPYDADPRYFRF---------VKGSSHSGEESEPLRG 225

Query: 121 EVDTDSDSL-DSAGKWKGSSCLEESKENLGKSSLKFPTTK--PPTGTWYSCTSSEEDEDV 180
           + +  S++L D   KW  S   + SKE   K S  F  +K  P    +Y   +  +DED+
Sbjct: 226 DTEMSSEALGDGGAKWSKSDSEDGSKEVYTKGSSTFTKSKTMPGIEVYY---ADSDDEDI 285

Query: 181 CPTCLEEYTSENPKIVTKCSHHFHLGCIYEWMERSDNCPVCGKVMAFDE 227
           CPTCL++YT ENPKI+TKCSHHFHL CIYEWMERS+ CPVCGKVMAFDE
Sbjct: 286 CPTCLDDYTLENPKIITKCSHHFHLSCIYEWMERSETCPVCGKVMAFDE 322

The following BLAST results are available for this feature:

BLAST of Sed0020163 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022954554.1	2.0e-115	89.47	E3 ubiquitin-protein ligase At3g02290 [Cucurbita moschata] >XP_022954561.1 E3 ub...	[more]
XP_008459404.1	5.9e-115	89.47	PREDICTED: E3 ubiquitin-protein ligase At3g02290 [Cucumis melo]	[more]
XP_022990150.1	1.3e-114	88.60	E3 ubiquitin-protein ligase At3g02290 isoform X1 [Cucurbita maxima] >XP_02299015...	[more]
XP_038889911.1	1.7e-114	89.04	E3 ubiquitin-protein ligase At3g02290 [Benincasa hispida]	[more]
XP_022134111.1	8.5e-114	87.72	E3 ubiquitin-protein ligase At3g02290 [Momordica charantia] >XP_022134112.1 E3 u...	[more]

BLAST of Sed0020163 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8LE94	1.9e-71	60.26	E3 ubiquitin-protein ligase At3g02290 OS=Arabidopsis thaliana OX=3702 GN=At3g022...	[more]
Q2HIJ8	1.4e-15	41.07	Probable E3 ubiquitin-protein ligase RHB1A OS=Arabidopsis thaliana OX=3702 GN=RH...	[more]
Q93ZF6	1.0e-13	42.11	E3 ubiquitin-protein ligase AIRP1 OS=Arabidopsis thaliana OX=3702 GN=AIRP1 PE=1 ...	[more]
Q4TU14	4.5e-09	46.15	E3 ubiquitin-protein ligase RHF1A OS=Arabidopsis thaliana OX=3702 GN=RHF1A PE=1 ...	[more]
Q9ZT42	7.7e-09	38.89	E3 ubiquitin-protein ligase RHF2A OS=Arabidopsis thaliana OX=3702 GN=RHF2A PE=2 ...	[more]

BLAST of Sed0020163 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1GR85	9.8e-116	89.47	E3 ubiquitin-protein ligase At3g02290 OS=Cucurbita moschata OX=3662 GN=LOC111456...	[more]
A0A1S3CA28	2.8e-115	89.47	E3 ubiquitin-protein ligase At3g02290 OS=Cucumis melo OX=3656 GN=LOC103498549 PE...	[more]
A0A6J1JPB8	6.3e-115	88.60	E3 ubiquitin-protein ligase At3g02290 isoform X1 OS=Cucurbita maxima OX=3661 GN=...	[more]
A0A6J1BYQ7	4.1e-114	87.72	E3 ubiquitin-protein ligase At3g02290 OS=Momordica charantia OX=3673 GN=LOC11100...	[more]
A0A0A0KSH8	3.5e-113	88.60	RING-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_5G642120 P...	[more]

BLAST of Sed0020163 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G02290.1	1.3e-72	60.26	RING/U-box superfamily protein	[more]
AT5G15790.1	1.1e-71	56.71	RING/U-box superfamily protein	[more]
AT5G15790.2	1.1e-71	56.71	RING/U-box superfamily protein	[more]
AT5G38895.1	1.6e-70	55.90	RING/U-box superfamily protein	[more]
AT5G38895.3	1.6e-70	55.90	RING/U-box superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001841	Zinc finger, RING-type	SMART	SM00184	ring_2	coord: 122..162 e-value: 1.4E-6 score: 37.8
IPR001841	Zinc finger, RING-type	PFAM	PF13639	zf-RING_2	coord: 121..162 e-value: 2.8E-11 score: 43.6
IPR001841	Zinc finger, RING-type	PROSITE	PS50089	ZF_RING_2	coord: 122..162 score: 12.002429
IPR013083	Zinc finger, RING/FYVE/PHD-type	GENE3D	3.30.40.10	Zinc/RING finger domain, C3HC4 (zinc finger)	coord: 102..170 e-value: 3.1E-15 score: 57.1
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 51..74
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 51..82
None	No IPR available	PANTHER	PTHR46463:SF43	TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED	coord: 37..171
None	No IPR available	PANTHER	PTHR46463:SF43	TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED	coord: 1..33
None	No IPR available	PANTHER	PTHR46463	ZINC FINGER, RING/FYVE/PHD-TYPE	coord: 1..33
None	No IPR available	PANTHER	PTHR46463	ZINC FINGER, RING/FYVE/PHD-TYPE	coord: 37..171
None	No IPR available	SUPERFAMILY	57850	RING/U-box	coord: 115..168

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0020163.1	Sed0020163.1	mRNA
Sed0020163.2	Sed0020163.2	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0016567	protein ubiquitination
molecular_function	GO:0004842	ubiquitin-protein transferase activity
molecular_function	GO:0008270	zinc ion binding