Sed0020122 (gene) Chayote v1

Overview


Name	Sed0020122
Type	gene
Organism	Sechium edule (Chayote v1)
Description	RING-H2 finger protein ATL74-like
Location	LG02: 31663736 .. 31664675 (-)
RNA-Seq Expression	Sed0020122
Synteny	Sed0020122

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GGCCACTTGTGTGAAAATTACGTATCCATGAAAATTAATTCCTTTTGTTTTGTTACTCTGCTGAGTATGGAACTGTATTCATCCTGAAAGGTACCATATTGTTTTCAATTAAACAGTTAGGAAATCAGTTTTCGATGATCAGAGGTGGTGGAATTATGGATGAAAACTTGGCACGGCGAGTACTGGAAACCGAGGCGCTGCAAGGGAAGCGGAGGGAGATGAATCTGGACGCGCACATGGTGGTAATTCTGGGTGCCTTGTTGTGTGCAATTATTGTAGCGATTGGAGTGAGCTCCATGGTACGCTGCATTTTGCGATTTGGCTACCGGATTCGCGGGGAGCGTTCGGAGCACGCGACCGGGCTTAAGAAGCGAGAGCTGGGTCGGATTCCAGTCGGGGTGTATGGAAGTGATGTAAATATTAAGGGTGCGGATTGTGCGATTTGCCTTGGGGAATTTGAAGCGGGGGACAAGGTTAGAATGTTGCCTATTTGCAACCATGGATTCCACATAGGATGCATTGATACTTGGCTGCTATCTCACTCGTCTTGCCCCTACTGTCGCCATTCCTTACTGCACCCAACCGTTAAAGGGAAACCAGAGGCCGTCGATGTTTCGCTGCCGCCGCCCCCGGGTTCTGCATCGAGCCACTTCGTTGTGTTTATTGAGAGTAGCAATTAGCAAATAGCTTCTTTTGGGGTATTGAGTTGCGTACTGTAGATTTGGAAGAGTCTTTGTTTGTTGTTGGAACTTTGTGTACATACTCTTCCACAGGCAGAGATTCTTTTTTGCTTTTTGTTTTTTGTCTTTGTCTTTATGACAGGCTGTGGATAAGAGAATAACTAGGTTAGATCTACAAAAAATCGATCACATCATTATTTATTTTATTATTATTTCTTTTTTTTTGGTATTATCTTCTTTAAACAAAAGAAATGATTATT

mRNA sequence

GGCCACTTGTGTGAAAATTACGTATCCATGAAAATTAATTCCTTTTGTTTTGTTACTCTGCTGAGTATGGAACTGTATTCATCCTGAAAGGTACCATATTGTTTTCAATTAAACAGTTAGGAAATCAGTTTTCGATGATCAGAGGTGGTGGAATTATGGATGAAAACTTGGCACGGCGAGTACTGGAAACCGAGGCGCTGCAAGGGAAGCGGAGGGAGATGAATCTGGACGCGCACATGGTGGTAATTCTGGGTGCCTTGTTGTGTGCAATTATTGTAGCGATTGGAGTGAGCTCCATGGTACGCTGCATTTTGCGATTTGGCTACCGGATTCGCGGGGAGCGTTCGGAGCACGCGACCGGGCTTAAGAAGCGAGAGCTGGGTCGGATTCCAGTCGGGGTGTATGGAAGTGATGTAAATATTAAGGGTGCGGATTGTGCGATTTGCCTTGGGGAATTTGAAGCGGGGGACAAGGTTAGAATGTTGCCTATTTGCAACCATGGATTCCACATAGGATGCATTGATACTTGGCTGCTATCTCACTCGTCTTGCCCCTACTGTCGCCATTCCTTACTGCACCCAACCGTTAAAGGGAAACCAGAGGCCGTCGATGTTTCGCTGCCGCCGCCCCCGGGTTCTGCATCGAGCCACTTCGTTGTGTTTATTGAGAGTAGCAATTAGCAAATAGCTTCTTTTGGGGTATTGAGTTGCGTACTGTAGATTTGGAAGAGTCTTTGTTTGTTGTTGGAACTTTGTGTACATACTCTTCCACAGGCAGAGATTCTTTTTTGCTTTTTGTTTTTTGTCTTTGTCTTTATGACAGGCTGTGGATAAGAGAATAACTAGGTTAGATCTACAAAAAATCGATCACATCATTATTTATTTTATTATTATTTCTTTTTTTTTGGTATTATCTTCTTTAAACAAAAGAAATGATTATT

Coding sequence (CDS)

ATGATCAGAGGTGGTGGAATTATGGATGAAAACTTGGCACGGCGAGTACTGGAAACCGAGGCGCTGCAAGGGAAGCGGAGGGAGATGAATCTGGACGCGCACATGGTGGTAATTCTGGGTGCCTTGTTGTGTGCAATTATTGTAGCGATTGGAGTGAGCTCCATGGTACGCTGCATTTTGCGATTTGGCTACCGGATTCGCGGGGAGCGTTCGGAGCACGCGACCGGGCTTAAGAAGCGAGAGCTGGGTCGGATTCCAGTCGGGGTGTATGGAAGTGATGTAAATATTAAGGGTGCGGATTGTGCGATTTGCCTTGGGGAATTTGAAGCGGGGGACAAGGTTAGAATGTTGCCTATTTGCAACCATGGATTCCACATAGGATGCATTGATACTTGGCTGCTATCTCACTCGTCTTGCCCCTACTGTCGCCATTCCTTACTGCACCCAACCGTTAAAGGGAAACCAGAGGCCGTCGATGTTTCGCTGCCGCCGCCCCCGGGTTCTGCATCGAGCCACTTCGTTGTGTTTATTGAGAGTAGCAATTAG

Protein sequence

MIRGGGIMDENLARRVLETEALQGKRREMNLDAHMVVILGALLCAIIVAIGVSSMVRCILRFGYRIRGERSEHATGLKKRELGRIPVGVYGSDVNIKGADCAICLGEFEAGDKVRMLPICNHGFHIGCIDTWLLSHSSCPYCRHSLLHPTVKGKPEAVDVSLPPPPGSASSHFVVFIESSN

Homology

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BLAST of Sed0020122 vs. NCBI nr
Match: XP_022971293.1 (RING-H2 finger protein ATL74-like [Cucurbita maxima])

HSP 1 Score: 236.9 bits (603), Expect = 1.4e-58
Identity = 127/188 (67.55%), Postives = 140/188 (74.47%), Query Frame = 0


Query: 8   MDENLARRVLETEALQGKRR--------EMNLDAHMVVILGALLCAIIVAIGVSSMVRCI 67
           MD NL RR+L TEA+QG           EMNLDAHMVVIL ALL A+I A+GV+++VRC+
Sbjct: 1   MDPNLPRRLLATEAVQGNTTANSSYYVGEMNLDAHMVVILAALLFALIGALGVNALVRCV 60

Query: 68  LRFGYRIRGERSEH------ATGLKKRELGRIPVGVYGSD-VNIKGADCAICLGEFEAGD 127
           L  G+R R ER E       A GLKKREL +IPVGVYGSD   IKG DCAICLGEFE GD
Sbjct: 61  LSLGFRFRTERPEETAARLAAIGLKKRELSQIPVGVYGSDCAKIKGTDCAICLGEFEVGD 120

Query: 128 KVRMLPICNHGFHIGCIDTWLLSHSSCPYCRHSLLHPTVKGKPEAVDVSLPPPP--GSAS 179
           KVRMLPICNHGFH+ CIDTWLLSHSSCP CRHSLL P VKGK +AV VS  PPP  GSAS
Sbjct: 121 KVRMLPICNHGFHVRCIDTWLLSHSSCPNCRHSLLLPPVKGKRDAVTVSPAPPPPRGSAS 180

[Close]

BLAST of Sed0020122 vs. NCBI nr
Match: XP_023540727.1 (RING-H2 finger protein ATL74-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 229.6 bits (584), Expect = 2.2e-56
Identity = 123/186 (66.13%), Postives = 135/186 (72.58%), Query Frame = 0


Query: 8   MDENLARRVLETEALQGKRR--------EMNLDAHMVVILGALLCAIIVAIGVSSMVRCI 67
           MD NL RR+L TE + G           EMNLDAHMVVIL ALL A+I A+GV+S+VRC+
Sbjct: 1   MDPNLPRRLLATEPVPGNTTANSSYYVGEMNLDAHMVVILAALLFALIGALGVNSLVRCV 60

Query: 68  LRFGYRIRGERSEH------ATGLKKRELGRIPVGVYGSD-VNIKGADCAICLGEFEAGD 127
           L  G+R R ER E       A GLKKREL +IPVGVYGSD   IKG DCAICLGEFE GD
Sbjct: 61  LSLGFRFRTERPEETAARLAAIGLKKRELSQIPVGVYGSDCAKIKGTDCAICLGEFEVGD 120

Query: 128 KVRMLPICNHGFHIGCIDTWLLSHSSCPYCRHSLLHPTVKGKPEAVDVSLPPPPGSASSH 179
           KVRMLPICNHGFH+ CIDTWLLSHSSCP CRHSLL P VKGK +   VS  PP GSASSH
Sbjct: 121 KVRMLPICNHGFHVRCIDTWLLSHSSCPNCRHSLLLPPVKGKRDGATVS--PPQGSASSH 180

[Close]

BLAST of Sed0020122 vs. NCBI nr
Match: XP_022930638.1 (RING-H2 finger protein ATL74-like [Cucurbita moschata] >KAG6596310.1 RING-H2 finger protein ATL72, partial [Cucurbita argyrosperma subsp. sororia] >KAG7027864.1 RING-H2 finger protein ATL72, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 224.9 bits (572), Expect = 5.4e-55
Identity = 123/188 (65.43%), Postives = 135/188 (71.81%), Query Frame = 0


Query: 8   MDENLARRVLETEALQGKRR--------EMNLDAHMVVILGALLCAIIVAIGVSSMVRCI 67
           MD NL RR+L TE + G           EMNLDAHMVVIL ALL A+I A+GV+S+VRC+
Sbjct: 1   MDPNLPRRLLATEPVPGNTTANSSYYVGEMNLDAHMVVILAALLFALIGALGVNSLVRCV 60

Query: 68  LRFGYRIRGERSEH------ATGLKKRELGRIPVGVYGSD-VNIKGADCAICLGEFEAGD 127
           L  G+R R ER E       A GLKKREL +IPVGVYGSD   IKG DCAICLGEFE GD
Sbjct: 61  LSLGFRFR-ERPEETAARLAAIGLKKRELSQIPVGVYGSDCAKIKGTDCAICLGEFEVGD 120

Query: 128 KVRMLPICNHGFHIGCIDTWLLSHSSCPYCRHSLLHPTVKGKPEAVDVS--LPPPPGSAS 179
           KVRMLP CNHGFH+ CIDTWLLSHSSCP CRHSLL P VKGK +   VS   PPP GSAS
Sbjct: 121 KVRMLPNCNHGFHVRCIDTWLLSHSSCPNCRHSLLLPPVKGKRDGATVSPPQPPPQGSAS 180

[Close]

BLAST of Sed0020122 vs. NCBI nr
Match: XP_022157309.1 (RING-H2 finger protein ATL74-like [Momordica charantia])

HSP 1 Score: 202.6 bits (514), Expect = 2.9e-48
Identity = 108/192 (56.25%), Postives = 133/192 (69.27%), Query Frame = 0


Query: 8   MDENLARRVLETE----ALQGKRR-------EMNLDAHMVVILGALLCAIIVAIGVSSMV 67
           M++NLARR+L TE      +  R        EMNLDA+MVVIL AL CA+I A+G++S+V
Sbjct: 1   MEQNLARRLLATELGNTPSEANRTGDSAYVGEMNLDANMVVILAALSCALIGALGMNSIV 60

Query: 68  RCILRFGYRIRGERSEHATGLKKRELGRIPVGVY-------GSDVNIKGADCAICLGEFE 127
           RC+LR      G  +  ATGLKKR+LG+IPVGVY       G+ VNIKG DCAICLGEF+
Sbjct: 61  RCVLRCSQSPEGAAA--ATGLKKRDLGQIPVGVYGIGGGDGGNMVNIKGTDCAICLGEFQ 120

Query: 128 AGDKVRMLPICNHGFHIGCIDTWLLSHSSCPYCRHSLLHPTVKGKPEAVDVSLPPPPGSA 182
            GDK+RMLP+CNHGFH+ CIDTWLLSHSSCP CRHSLLHP +K K  A     PP   S 
Sbjct: 121 PGDKLRMLPVCNHGFHVRCIDTWLLSHSSCPNCRHSLLHPPLKVKEIAAVSQPPPASAST 180

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BLAST of Sed0020122 vs. NCBI nr
Match: KAG2691122.1 (hypothetical protein I3760_09G221900 [Carya illinoinensis] >KAG6697898.1 hypothetical protein I3842_09G224700 [Carya illinoinensis] >KAG7965310.1 hypothetical protein I3843_09G217000 [Carya illinoinensis])

HSP 1 Score: 172.2 bits (435), Expect = 4.2e-39
Identity = 86/149 (57.72%), Postives = 102/149 (68.46%), Query Frame = 0


Query: 28  EMNLDAHMVVILGALLCAIIVAIGVSSMVRCILRFGYRIRGERSEH------ATGLKKRE 87
           E N D +MV+IL ALLCA+I A+G++S+VRC LR   R   E  E       ATGLKKR+
Sbjct: 27  ETNFDTNMVIILAALLCALICALGLNSIVRCALRCSRRFALETPEQTAARLAATGLKKRD 86

Query: 88  LGRIPVGVYGSDVNIKGADCAICLGEFEAGDKVRMLPICNHGFHIGCIDTWLLSHSSCPY 147
           L +IPV +YGS VNIK  +CAICLGEFE G+ VR+LP CNHGFH+ CIDTWLLSHSSCP 
Sbjct: 87  LRQIPVAIYGSGVNIKATECAICLGEFEDGENVRVLPKCNHGFHVSCIDTWLLSHSSCPN 146

Query: 148 CRHSLLHPTVKGKPEAVDVSLPPPPGSAS 171
           CRHSL      G      VSL  P G+ +
Sbjct: 147 CRHSLWEHPTTGSGTNPQVSLAEPSGNGA 175

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BLAST of Sed0020122 vs. ExPASy Swiss-Prot
Match: Q9LZV8 (RING-H2 finger protein ATL74 OS=Arabidopsis thaliana OX=3702 GN=ATL74 PE=2 SV=1)

HSP 1 Score: 155.2 bits (391), Expect = 6.9e-37
Identity = 74/135 (54.81%), Postives = 97/135 (71.85%), Query Frame = 0


Query: 24  GKRREMNLDAHMVVILGALLCAIIVAIGVSSMVRCILRFGYRIRGERS----EHATGLKK 83
           G  R+MN DA+MV+IL ALLCA+I+A+G++S++RC +R G+ +    +        GLKK
Sbjct: 23  GYTRDMNFDANMVIILAALLCALILALGLNSILRCAMRCGFGLSSSAAAGTVADRAGLKK 82

Query: 84  RELGRIPVGVYGS-DVNIKGADCAICLGEFEAGDKVRMLPICNHGFHIGCIDTWLLSHSS 143
           REL + PV  YGS +V I   +CAICLGEF  G++VR+LP CNH FH+ CIDTWL+SHSS
Sbjct: 83  RELKKFPVAEYGSGEVKIAATECAICLGEFADGERVRVLPPCNHSFHMSCIDTWLVSHSS 142

Query: 144 CPYCRHSLLHPTVKG 154
           CP CRHSL+   V G
Sbjct: 143 CPNCRHSLIEVHVAG 157

[Close]

BLAST of Sed0020122 vs. ExPASy Swiss-Prot
Match: Q9SG96 (RING-H2 finger protein ATL72 OS=Arabidopsis thaliana OX=3702 GN=ATL72 PE=2 SV=1)

HSP 1 Score: 141.0 bits (354), Expect = 1.4e-32
Identity = 71/140 (50.71%), Postives = 93/140 (66.43%), Query Frame = 0


Query: 23  QGKRREMNLDAHMVVILGALLCAIIVAIGVSSMVRCILRFGYRIRGE------------- 82
           +G   +   D +MV+IL ALLCA+I A+ ++S +RC+LR   R   +             
Sbjct: 21  KGGINDTYFDTNMVIILAALLCALICALSLNSALRCVLRITRRFTSDDQVSNASNANANL 80

Query: 83  -RSEHATGLKKRELGRIPVGVYGSD-VNIKGADCAICLGEFEAGDKVRMLPICNHGFHIG 142
            R   ATGLKK+ L +IPVG+YGS  +++K  +C ICLG+FE G+KVR+LP CNHGFH+ 
Sbjct: 81  GRLAAATGLKKQALKQIPVGLYGSGIIDMKATECLICLGDFEDGEKVRVLPKCNHGFHVR 140

Query: 143 CIDTWLLSHSSCPYCRHSLL 148
           CIDTWLLS SSCP CR SLL
Sbjct: 141 CIDTWLLSRSSCPTCRQSLL 160

[Close]

BLAST of Sed0020122 vs. ExPASy Swiss-Prot
Match: Q9FLC6 (RING-H2 finger protein ATL73 OS=Arabidopsis thaliana OX=3702 GN=ATL73 PE=2 SV=1)

HSP 1 Score: 141.0 bits (354), Expect = 1.4e-32
Identity = 66/134 (49.25%), Postives = 90/134 (67.16%), Query Frame = 0


Query: 20  EALQGKRREMNLDAHMVVILGALLCAIIVAIGVSSMVRCILRFGYRIR------GERSEH 79
           +++   +   ++D HMV+IL ALLCA+I A+G++S++RC+LR   R           +  
Sbjct: 26  DSVSNNKNIASMDTHMVIILAALLCALICALGINSVLRCVLRCTRRFTPNEDPVDTNANV 85

Query: 80  ATGLKKRELGRIPVGVYGSDVNIKGADCAICLGEFEAGDKVRMLPICNHGFHIGCIDTWL 139
           A G+KKR L  IPV  Y  ++ +K  +C ICLG+F  G+ VR+LP CNHGFH+ CIDTWL
Sbjct: 86  AKGIKKRALKVIPVDSYSPELKMKATECLICLGDFVEGETVRVLPKCNHGFHVKCIDTWL 145

Query: 140 LSHSSCPYCRHSLL 148
           LSHSSCP CR SLL
Sbjct: 146 LSHSSCPTCRQSLL 159

[Close]

BLAST of Sed0020122 vs. ExPASy Swiss-Prot
Match: Q6NQG7 (RING-H2 finger protein ATL78 OS=Arabidopsis thaliana OX=3702 GN=ATL78 PE=2 SV=1)

HSP 1 Score: 119.0 bits (297), Expect = 5.5e-26
Identity = 56/132 (42.42%), Postives = 83/132 (62.88%), Query Frame = 0


Query: 30  NLDAHMVVILGALLCAIIVAIGVSSMVRCILRFGYRIRGERSEH-------ATGLKKREL 89
           N DA++V++L  LLCA++ ++G++S++RC LR    +  E            TG+K++ L
Sbjct: 51  NFDANVVMVLSVLLCALVCSLGLNSIIRCALRCSNLVPSEAGGDNYPVRLTNTGVKRKAL 110

Query: 90  GRIPVGVYGSDVNIKGAD--CAICLGEFEAGDKVRMLPICNHGFHIGCIDTWLLSHSSCP 149
                  Y +++N+ G D  CAICL EF A ++V++LP C+HGFH+ CID WL SHSSCP
Sbjct: 111 KSFQTVSYSTELNLPGLDTECAICLSEFVAEERVKLLPTCHHGFHVRCIDKWLSSHSSCP 170

Query: 150 YCRHSLLHPTVK 153
            CRH L+    K
Sbjct: 171 TCRHCLIQTCEK 182

[Close]

BLAST of Sed0020122 vs. ExPASy Swiss-Prot
Match: P0C034 (RING-H2 finger protein ATL10 OS=Arabidopsis thaliana OX=3702 GN=ATL10 PE=2 SV=1)

HSP 1 Score: 108.6 bits (270), Expect = 7.4e-23
Identity = 52/136 (38.24%), Postives = 78/136 (57.35%), Query Frame = 0


Query: 28  EMNLDAHMVVILGALLCAIIVAIGVSSMVRCILRFGYR---------IRGERSEHATGLK 87
           E NL  +++++L  L+C II  +G+  ++RC LR   R         +   R     G+K
Sbjct: 51  ENNLSGNVMMLLSILICGIICCLGLHYIIRCALRRSTRFMISEPVPSLSSTRGSSNKGIK 110

Query: 88  KRELGRIPVGVYGSDVNIKGAD--CAICLGEFEAGDKVRMLPICNHGFHIGCIDTWLLSH 147
           K+ L   PV  Y  ++N+ G D  C ICL +F +G+++R+LP CNHGFH+ CID WL  H
Sbjct: 111 KKALRMFPVVSYSPEMNLPGLDEECVICLSDFVSGEQLRLLPKCNHGFHVRCIDKWLQQH 170

Query: 148 SSCPYCRHSLLHPTVK 153
            +CP CR+ L+    K
Sbjct: 171 LTCPKCRNCLVETCQK 186

[Close]

BLAST of Sed0020122 vs. ExPASy TrEMBL
Match: A0A6J1I6E6 (RING-H2 finger protein ATL74-like OS=Cucurbita maxima OX=3661 GN=LOC111470053 PE=4 SV=1)

HSP 1 Score: 236.9 bits (603), Expect = 6.7e-59
Identity = 127/188 (67.55%), Postives = 140/188 (74.47%), Query Frame = 0


Query: 8   MDENLARRVLETEALQGKRR--------EMNLDAHMVVILGALLCAIIVAIGVSSMVRCI 67
           MD NL RR+L TEA+QG           EMNLDAHMVVIL ALL A+I A+GV+++VRC+
Sbjct: 1   MDPNLPRRLLATEAVQGNTTANSSYYVGEMNLDAHMVVILAALLFALIGALGVNALVRCV 60

Query: 68  LRFGYRIRGERSEH------ATGLKKRELGRIPVGVYGSD-VNIKGADCAICLGEFEAGD 127
           L  G+R R ER E       A GLKKREL +IPVGVYGSD   IKG DCAICLGEFE GD
Sbjct: 61  LSLGFRFRTERPEETAARLAAIGLKKRELSQIPVGVYGSDCAKIKGTDCAICLGEFEVGD 120

Query: 128 KVRMLPICNHGFHIGCIDTWLLSHSSCPYCRHSLLHPTVKGKPEAVDVSLPPPP--GSAS 179
           KVRMLPICNHGFH+ CIDTWLLSHSSCP CRHSLL P VKGK +AV VS  PPP  GSAS
Sbjct: 121 KVRMLPICNHGFHVRCIDTWLLSHSSCPNCRHSLLLPPVKGKRDAVTVSPAPPPPRGSAS 180

[Close]

BLAST of Sed0020122 vs. ExPASy TrEMBL
Match: A0A6J1EVU3 (RING-H2 finger protein ATL74-like OS=Cucurbita moschata OX=3662 GN=LOC111437007 PE=4 SV=1)

HSP 1 Score: 224.9 bits (572), Expect = 2.6e-55
Identity = 123/188 (65.43%), Postives = 135/188 (71.81%), Query Frame = 0


Query: 8   MDENLARRVLETEALQGKRR--------EMNLDAHMVVILGALLCAIIVAIGVSSMVRCI 67
           MD NL RR+L TE + G           EMNLDAHMVVIL ALL A+I A+GV+S+VRC+
Sbjct: 1   MDPNLPRRLLATEPVPGNTTANSSYYVGEMNLDAHMVVILAALLFALIGALGVNSLVRCV 60

Query: 68  LRFGYRIRGERSEH------ATGLKKRELGRIPVGVYGSD-VNIKGADCAICLGEFEAGD 127
           L  G+R R ER E       A GLKKREL +IPVGVYGSD   IKG DCAICLGEFE GD
Sbjct: 61  LSLGFRFR-ERPEETAARLAAIGLKKRELSQIPVGVYGSDCAKIKGTDCAICLGEFEVGD 120

Query: 128 KVRMLPICNHGFHIGCIDTWLLSHSSCPYCRHSLLHPTVKGKPEAVDVS--LPPPPGSAS 179
           KVRMLP CNHGFH+ CIDTWLLSHSSCP CRHSLL P VKGK +   VS   PPP GSAS
Sbjct: 121 KVRMLPNCNHGFHVRCIDTWLLSHSSCPNCRHSLLLPPVKGKRDGATVSPPQPPPQGSAS 180

[Close]

BLAST of Sed0020122 vs. ExPASy TrEMBL
Match: A0A6J1DW47 (RING-H2 finger protein ATL74-like OS=Momordica charantia OX=3673 GN=LOC111024041 PE=4 SV=1)

HSP 1 Score: 202.6 bits (514), Expect = 1.4e-48
Identity = 108/192 (56.25%), Postives = 133/192 (69.27%), Query Frame = 0


Query: 8   MDENLARRVLETE----ALQGKRR-------EMNLDAHMVVILGALLCAIIVAIGVSSMV 67
           M++NLARR+L TE      +  R        EMNLDA+MVVIL AL CA+I A+G++S+V
Sbjct: 1   MEQNLARRLLATELGNTPSEANRTGDSAYVGEMNLDANMVVILAALSCALIGALGMNSIV 60

Query: 68  RCILRFGYRIRGERSEHATGLKKRELGRIPVGVY-------GSDVNIKGADCAICLGEFE 127
           RC+LR      G  +  ATGLKKR+LG+IPVGVY       G+ VNIKG DCAICLGEF+
Sbjct: 61  RCVLRCSQSPEGAAA--ATGLKKRDLGQIPVGVYGIGGGDGGNMVNIKGTDCAICLGEFQ 120

Query: 128 AGDKVRMLPICNHGFHIGCIDTWLLSHSSCPYCRHSLLHPTVKGKPEAVDVSLPPPPGSA 182
            GDK+RMLP+CNHGFH+ CIDTWLLSHSSCP CRHSLLHP +K K  A     PP   S 
Sbjct: 121 PGDKLRMLPVCNHGFHVRCIDTWLLSHSSCPNCRHSLLHPPLKVKEIAAVSQPPPASAST 180

[Close]

BLAST of Sed0020122 vs. ExPASy TrEMBL
Match: A0A5N6RI02 (RING-type domain-containing protein OS=Carpinus fangiana OX=176857 GN=FH972_017037 PE=4 SV=1)

HSP 1 Score: 171.8 bits (434), Expect = 2.6e-39
Identity = 91/156 (58.33%), Postives = 109/156 (69.87%), Query Frame = 0


Query: 14  RRVLETEAL-----QGKR-------REMNLDAHMVVILGALLCAIIVAIGVSSMVRCILR 73
           RR+LET+ L      G R        E N D +MV+IL ALLCA+I A+G++S+VRC LR
Sbjct: 3   RRLLETDQLNLPPDNGNRTRDSSYISETNFDTNMVIILAALLCALICALGLNSIVRCALR 62

Query: 74  FGYRIRGERSEH------ATGLKKRELGRIPVGVYGSDVNIKGADCAICLGEFEAGDKVR 133
              R   E +E       ATGLKKR+L +IPV +YGS VNIK  +C ICLGEFE G+KVR
Sbjct: 63  CSRRFALETAEQTAARLAATGLKKRDLRQIPVAIYGSGVNIKATECPICLGEFEDGEKVR 122

Query: 134 MLPICNHGFHIGCIDTWLLSHSSCPYCRHSLL-HPT 151
           +LP CNHGFH+ CIDTWLLSHSSCP CRHSLL HP+
Sbjct: 123 VLPKCNHGFHVRCIDTWLLSHSSCPNCRHSLLDHPS 158

[Close]

BLAST of Sed0020122 vs. ExPASy TrEMBL
Match: A0A1S3B8C4 (RING-H2 finger protein ATL74-like OS=Cucumis melo OX=3656 GN=LOC103487125 PE=4 SV=1)

HSP 1 Score: 170.6 bits (431), Expect = 5.9e-39
Identity = 94/185 (50.81%), Postives = 111/185 (60.00%), Query Frame = 0


Query: 8   MDENLARRVLETEALQGKRR--------EMNLDAHMVVILGALLCAIIVAIGVSSMVRCI 67
           MD+ L R + E    QG R         E+N D HM + L ALLC +I A+GV+S+VRC 
Sbjct: 1   MDQKLRRGLTEA---QGNRTSNWSNYVGEINFDVHMTLTLAALLCLLIGAVGVNSIVRCF 60

Query: 68  LRFGYRIRGERSEH---ATGLKKRELGRIPVGVYGSDVNIKGADCAICLGEFEAGDKVRM 127
           LR  Y    ER+E    A GLKK+EL  IP+GVYGSD NIK  DCAICL +FE GDK+RM
Sbjct: 61  LRCRYSFETERAEEDASAQGLKKQELALIPIGVYGSDANIKSTDCAICLAQFEVGDKLRM 120

Query: 128 LPICNHGFHIGCIDTWLLSHSSCPYCRHSLLHPTVKGKPEAVDVSLPPPPGSASSHFVVF 182
           LPICNHGFH+ CIDTWLLS+ SCP CR S+                   P   S H VV 
Sbjct: 121 LPICNHGFHLTCIDTWLLSNFSCPNCRQSV------------------KPPHTSPHIVVI 164

[Close]

BLAST of Sed0020122 vs. TAIR 10
Match: AT5G01880.1 (RING/U-box superfamily protein )

HSP 1 Score: 155.2 bits (391), Expect = 4.9e-38
Identity = 74/135 (54.81%), Postives = 97/135 (71.85%), Query Frame = 0


Query: 24  GKRREMNLDAHMVVILGALLCAIIVAIGVSSMVRCILRFGYRIRGERS----EHATGLKK 83
           G  R+MN DA+MV+IL ALLCA+I+A+G++S++RC +R G+ +    +        GLKK
Sbjct: 23  GYTRDMNFDANMVIILAALLCALILALGLNSILRCAMRCGFGLSSSAAAGTVADRAGLKK 82

Query: 84  RELGRIPVGVYGS-DVNIKGADCAICLGEFEAGDKVRMLPICNHGFHIGCIDTWLLSHSS 143
           REL + PV  YGS +V I   +CAICLGEF  G++VR+LP CNH FH+ CIDTWL+SHSS
Sbjct: 83  RELKKFPVAEYGSGEVKIAATECAICLGEFADGERVRVLPPCNHSFHMSCIDTWLVSHSS 142

Query: 144 CPYCRHSLLHPTVKG 154
           CP CRHSL+   V G
Sbjct: 143 CPNCRHSLIEVHVAG 157

[Close]

BLAST of Sed0020122 vs. TAIR 10
Match: AT3G10910.1 (RING/U-box superfamily protein )

HSP 1 Score: 141.0 bits (354), Expect = 9.6e-34
Identity = 71/140 (50.71%), Postives = 93/140 (66.43%), Query Frame = 0


Query: 23  QGKRREMNLDAHMVVILGALLCAIIVAIGVSSMVRCILRFGYRIRGE------------- 82
           +G   +   D +MV+IL ALLCA+I A+ ++S +RC+LR   R   +             
Sbjct: 21  KGGINDTYFDTNMVIILAALLCALICALSLNSALRCVLRITRRFTSDDQVSNASNANANL 80

Query: 83  -RSEHATGLKKRELGRIPVGVYGSD-VNIKGADCAICLGEFEAGDKVRMLPICNHGFHIG 142
            R   ATGLKK+ L +IPVG+YGS  +++K  +C ICLG+FE G+KVR+LP CNHGFH+ 
Sbjct: 81  GRLAAATGLKKQALKQIPVGLYGSGIIDMKATECLICLGDFEDGEKVRVLPKCNHGFHVR 140

Query: 143 CIDTWLLSHSSCPYCRHSLL 148
           CIDTWLLS SSCP CR SLL
Sbjct: 141 CIDTWLLSRSSCPTCRQSLL 160

[Close]

BLAST of Sed0020122 vs. TAIR 10
Match: AT5G05280.1 (RING/U-box superfamily protein )

HSP 1 Score: 141.0 bits (354), Expect = 9.6e-34
Identity = 66/134 (49.25%), Postives = 90/134 (67.16%), Query Frame = 0


Query: 20  EALQGKRREMNLDAHMVVILGALLCAIIVAIGVSSMVRCILRFGYRIR------GERSEH 79
           +++   +   ++D HMV+IL ALLCA+I A+G++S++RC+LR   R           +  
Sbjct: 26  DSVSNNKNIASMDTHMVIILAALLCALICALGINSVLRCVLRCTRRFTPNEDPVDTNANV 85

Query: 80  ATGLKKRELGRIPVGVYGSDVNIKGADCAICLGEFEAGDKVRMLPICNHGFHIGCIDTWL 139
           A G+KKR L  IPV  Y  ++ +K  +C ICLG+F  G+ VR+LP CNHGFH+ CIDTWL
Sbjct: 86  AKGIKKRALKVIPVDSYSPELKMKATECLICLGDFVEGETVRVLPKCNHGFHVKCIDTWL 145

Query: 140 LSHSSCPYCRHSLL 148
           LSHSSCP CR SLL
Sbjct: 146 LSHSSCPTCRQSLL 159

[Close]

BLAST of Sed0020122 vs. TAIR 10
Match: AT1G49230.1 (RING/U-box superfamily protein )

HSP 1 Score: 119.0 bits (297), Expect = 3.9e-27
Identity = 56/132 (42.42%), Postives = 83/132 (62.88%), Query Frame = 0


Query: 30  NLDAHMVVILGALLCAIIVAIGVSSMVRCILRFGYRIRGERSEH-------ATGLKKREL 89
           N DA++V++L  LLCA++ ++G++S++RC LR    +  E            TG+K++ L
Sbjct: 51  NFDANVVMVLSVLLCALVCSLGLNSIIRCALRCSNLVPSEAGGDNYPVRLTNTGVKRKAL 110

Query: 90  GRIPVGVYGSDVNIKGAD--CAICLGEFEAGDKVRMLPICNHGFHIGCIDTWLLSHSSCP 149
                  Y +++N+ G D  CAICL EF A ++V++LP C+HGFH+ CID WL SHSSCP
Sbjct: 111 KSFQTVSYSTELNLPGLDTECAICLSEFVAEERVKLLPTCHHGFHVRCIDKWLSSHSSCP 170

Query: 150 YCRHSLLHPTVK 153
            CRH L+    K
Sbjct: 171 TCRHCLIQTCEK 182

[Close]

BLAST of Sed0020122 vs. TAIR 10
Match: AT1G49220.1 (RING/U-box superfamily protein )

HSP 1 Score: 108.6 bits (270), Expect = 5.3e-24
Identity = 52/136 (38.24%), Postives = 78/136 (57.35%), Query Frame = 0


Query: 28  EMNLDAHMVVILGALLCAIIVAIGVSSMVRCILRFGYR---------IRGERSEHATGLK 87
           E NL  +++++L  L+C II  +G+  ++RC LR   R         +   R     G+K
Sbjct: 51  ENNLSGNVMMLLSILICGIICCLGLHYIIRCALRRSTRFMISEPVPSLSSTRGSSNKGIK 110

Query: 88  KRELGRIPVGVYGSDVNIKGAD--CAICLGEFEAGDKVRMLPICNHGFHIGCIDTWLLSH 147
           K+ L   PV  Y  ++N+ G D  C ICL +F +G+++R+LP CNHGFH+ CID WL  H
Sbjct: 111 KKALRMFPVVSYSPEMNLPGLDEECVICLSDFVSGEQLRLLPKCNHGFHVRCIDKWLQQH 170

Query: 148 SSCPYCRHSLLHPTVK 153
            +CP CR+ L+    K
Sbjct: 171 LTCPKCRNCLVETCQK 186

The following BLAST results are available for this feature:

BLAST of Sed0020122 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022971293.1	1.4e-58	67.55	RING-H2 finger protein ATL74-like [Cucurbita maxima]	[more]
XP_023540727.1	2.2e-56	66.13	RING-H2 finger protein ATL74-like [Cucurbita pepo subsp. pepo]	[more]
XP_022930638.1	5.4e-55	65.43	RING-H2 finger protein ATL74-like [Cucurbita moschata] >KAG6596310.1 RING-H2 fin...	[more]
XP_022157309.1	2.9e-48	56.25	RING-H2 finger protein ATL74-like [Momordica charantia]	[more]
KAG2691122.1	4.2e-39	57.72	hypothetical protein I3760_09G221900 [Carya illinoinensis] >KAG6697898.1 hypothe...	[more]

BLAST of Sed0020122 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9LZV8	6.9e-37	54.81	RING-H2 finger protein ATL74 OS=Arabidopsis thaliana OX=3702 GN=ATL74 PE=2 SV=1	[more]
Q9SG96	1.4e-32	50.71	RING-H2 finger protein ATL72 OS=Arabidopsis thaliana OX=3702 GN=ATL72 PE=2 SV=1	[more]
Q9FLC6	1.4e-32	49.25	RING-H2 finger protein ATL73 OS=Arabidopsis thaliana OX=3702 GN=ATL73 PE=2 SV=1	[more]
Q6NQG7	5.5e-26	42.42	RING-H2 finger protein ATL78 OS=Arabidopsis thaliana OX=3702 GN=ATL78 PE=2 SV=1	[more]
P0C034	7.4e-23	38.24	RING-H2 finger protein ATL10 OS=Arabidopsis thaliana OX=3702 GN=ATL10 PE=2 SV=1	[more]

BLAST of Sed0020122 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1I6E6	6.7e-59	67.55	RING-H2 finger protein ATL74-like OS=Cucurbita maxima OX=3661 GN=LOC111470053 PE...	[more]
A0A6J1EVU3	2.6e-55	65.43	RING-H2 finger protein ATL74-like OS=Cucurbita moschata OX=3662 GN=LOC111437007 ...	[more]
A0A6J1DW47	1.4e-48	56.25	RING-H2 finger protein ATL74-like OS=Momordica charantia OX=3673 GN=LOC111024041...	[more]
A0A5N6RI02	2.6e-39	58.33	RING-type domain-containing protein OS=Carpinus fangiana OX=176857 GN=FH972_0170...	[more]
A0A1S3B8C4	5.9e-39	50.81	RING-H2 finger protein ATL74-like OS=Cucumis melo OX=3656 GN=LOC103487125 PE=4 S...	[more]

BLAST of Sed0020122 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G01880.1	4.9e-38	54.81	RING/U-box superfamily protein	[more]
AT3G10910.1	9.6e-34	50.71	RING/U-box superfamily protein	[more]
AT5G05280.1	9.6e-34	49.25	RING/U-box superfamily protein	[more]
AT1G49230.1	3.9e-27	42.42	RING/U-box superfamily protein	[more]
AT1G49220.1	5.3e-24	38.24	RING/U-box superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001841	Zinc finger, RING-type	SMART	SM00184	ring_2	coord: 101..142 e-value: 4.8E-7 score: 39.4
IPR001841	Zinc finger, RING-type	PFAM	PF13639	zf-RING_2	coord: 100..143 e-value: 1.4E-13 score: 50.9
IPR001841	Zinc finger, RING-type	PROSITE	PS50089	ZF_RING_2	coord: 101..143 score: 11.648357
IPR013083	Zinc finger, RING/FYVE/PHD-type	GENE3D	3.30.40.10	Zinc/RING finger domain, C3HC4 (zinc finger)	coord: 64..148 e-value: 2.1E-20 score: 74.2
None	No IPR available	PANTHER	PTHR45798:SF44	RING-H2 FINGER PROTEIN ATL74	coord: 23..152
None	No IPR available	PANTHER	PTHR45798	RING-H2 FINGER PROTEIN ATL61-RELATED-RELATED	coord: 23..152
None	No IPR available	CDD	cd16454	RING-H2_PA-TM-RING	coord: 100..143 e-value: 4.48575E-19 score: 74.2605
None	No IPR available	SUPERFAMILY	57850	RING/U-box	coord: 89..149

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0020122.1	Sed0020122.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016020	membrane