Sed0020097 (gene) Chayote v1

Overview


Name	Sed0020097
Type	gene
Organism	Sechium edule (Chayote v1)
Description	S1-like domain-containing protein
Location	LG04: 2581758 .. 2585804 (-)
RNA-Seq Expression	Sed0020097
Synteny	Sed0020097

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GAAACAAAACCCTAGCCCTTGCATCAAACCCTCACTCCGACGACCTACACTCCACGCCACTTCTTTTCCTGCGCAGCGTCTCCCAATCCGTCCCAGGAGCTCATCGCCGCCGCCGCCGCCGCCGACTTTCTTCCGGCCACTTCAAGCTCCCTCGGTAGATATTCTCTTGTTGTTACTGGTATTCTCCCGATTTTCATCCATGTATTCATTATCACTATGAAAACACCAATTACGACATTCTAATGGAACAATGGAGTAGTTGTTTGACTATTACTTTTCAGTAGAATTTGCGTCGAAAAAAACAAAGCATTTCATCAAATTGTAGTCTGATTCGTAACTGGATGCACCGCATTTTGATTTGTTTCTGCGATCATGAATTTTCGAGCATCGCCGTCAGTGAATCATTCATCCAATTATGTTCTGATTGACTGAACAATTTCAGCTATATTCGTATTTGTAGCCAGCTCCGATTTCATTGAAGAACCCTAGTTGAAGCCGAATCACGGATAGAGATGAAGGGTGGAAGAAAAAACTTGCAGAGGGCATCGGAGCAACATATCGCAAGCCTCGAAAACGGTCATAGCATCATGCAGGTTGTCTCAATTCGTGGTTCCAATCTAATCGAGGTATTTTCCTATTTCATCGTTGCACATTCTGATTTCTATTTCTTTTTTTGTTTTGTTTTGAGAAACCTGATTTCTATTTCTTTGCCTATTAATTACTTCACGATCTAGCGCTTCTGCTATTGCCTATTGCGTTGCATCAATTGAACTGAATGAATAAGTGCTTTAGTTGCTGTTAGTTAATGGCGTTGCATCAATTTTATTAGTTATGTTTCCAACCATGACAACAAGAGTATTCAATCAAAGCCTTAAGAACCAATGGTTATGGTTTCAATTCACGGTAGCTGTCGTCCCAAAGGGGTGACACAGTGGTTGAAGACTTGGGTTTTGAGGGTATGCTCTCCTCAAGGTCTCAGGTTTGAGACTCACATGTGACATTACTTATTCGATGTCTCCGGTGCCACACCTAGAGACGGGCATGGTTACCTTGTTTAAAAAAAAAAATCATGGTAGCTATCTACTTAGAATTTAATTTTCTATGGGTTTTTTCACATCCAAATGCTATAGGATCAGATTGTAAGTTGGCTAGAACACTCACAAATCTAAAGAAAAAACAACAAGAGCATAGCTCGAGTGAGTGACATGATATATAACCCAACAAGTAAGAGGTTACGTGGTCAAACCCTCACCACCAAATATTTTTCAAATATTCTTGAATTATAAAAATATATATTTCCAACCACCATGAGTCGACCTAGTAATCTAGTGAGCTTTGAGAAACTAAGATGTTAAAGGGTTTTTTGACAATTAAATGTGTAACATCTTTGTAGAAATTTTACTTCTGTGGGAACTTATGTCATTCATTCTGATTAATTGAGTATTGATACGAACCATAATTTGTGCAGTTTCTCAGCTTGGAAAGCAATTTTCGCCAATTATTATTATTGAATTGAAAACAGAGATCATTTGTCATTATTTTTAGTAGCATGCTGTTATATTTTGGAAAATCTTTGATACAATATTGTATTCCTATTATCATCATCTCTAGGTAATGGATGCACTGGGCGAGAAATCACTGGCATTATTTCCTGCCAAGTTTCAAAAGAGTATGTGGATAAAGCGAGGTACGATCATACCCATTCTACTCATAATAAAACTGAGAAATCCCATTGCACATTACCTCACTCTTTTATCGAGGTTTTATTTAATAATTAATAAGCTTCTGTGAACTTCAGTGTTCATGAAATTCATGCATTGCAACTTTCGACCACTGGTTATGGCGCCATTTTTCCCTTTCACTTAGTAGCTCTTTGATCATTTTCATTGAAATATGGAGAAACTTTTAGATTATTTTGGATAATTTGTTTGGATTCCAATCTTAAGATAGCGAATTGAAATTCTATTATGGTCTAAAAGGGGATTTACACTGGTAAACTTTTGTATCCTCTTATTTGTTATCAATGGAAAGTCATTTTTTTATTCTCTTTTCATTTTTGTAAAATTGCTAATATAACTCATTACTGATTGCTTTTTTTTGTTGTTGCGTACACATTACTGATTGCTTTAGAATTATTGGAAAAGAGTATTTGAAAGAGTTGCTATCGTTGCAGGGAGTTTTGTTGTAGTTGATGAAAGTGGAAAGAAGACTGCTCTTGAATCTGGAAGCAAGGTTGCATGTATTGTTTCTCGAGTTCTTTATTTTGAACAAGTACGCGAGCTTCAAAAATCACCAGAATGGTATGTCATATCGAATATCTACGTACTCATTAAAATGGCTCTGGCATTGCTTAGTAAATGTACTAATCTTCATCATTATGGTTAGTTAGGGTAAATTCTTTTGGGTGGTGCTTAGGCCAAGGTGAATGAGAACGATTATAGAAAGGATGAGAATTAGGAGGAGAATGATGATGAGGAGAACTATTACTTGTGTTTGGGGTGAACAAAATAATTATTTTTTTAGATGAAGCGGGCAAAATAATTATGGGAAGAATAAAATAGTGAATTAAGTAGTATTTTTTCATGGTTTTTTATTCTTCCAAAAGATACATATTCATTATTGGTTATTGCATTGATGGACCATCCTTTCATGGAGAAAAAGAAGAAAGCATTACAGGAGAATTTTATTAAAGCAAGCACCTAGTTAAGATTGGATTCGTAGAATCTTCAAAGATGATGTTACTTCTTTTGAGCGATTCATGGATAATATCACTTATTTGGTGGTATCCTGGTGTAAAATTTCACCGCTTTTTTATGATTATAGTTTTGATTCCCTTACTAATAGCTGGAGATCCTTAGTATAATATGGATTGTTCTTATTTTGTAACTCTGTAATTTCATATCTCTAACGATATTGTCTCTTATCCAAAAAAAAAAATGAAGAGATAATGAAAAGTGGTTATGGGGAGGATAAAAATATAATATAATGTCATCATCTCATCCTTTCATTTTAGTATAATATGGATTGTCCTGATGTGGCATCATCTCATCCTTTCATTTTTCCTTTTTTTAAAAAAAAAAAATTAAAATTTTCCAAATTAAAAATAAAATCAATGGATGAAATGATGCCACATGGGGGCTGCATGGTGAGGCATGCAAACTTTTCTCAAATTATAATTATGGGGAGAATTAAAAGTGGTTAGAAAGAAATACAATTATAAGGAAAATAATTTTCAATACTCAAATGTCATCATCCTTTGTCTCGTCCCCAAGGGGTGGCATAGTGGTTGAAGACTTGGGCTTTGAGGGTATGCTCTCCCTCAAGTGTCCCAGGTTCGAGACTCGGCTGTGACATTACTCCTTCGATGTCTCCCGGTGATTGGCCTAGGGATGGACGTGGTTACCCTTGATTCAAAAAAAAATTCTCATCCTTTGTCTCAAATCAGCATTCACCCTCTGAGTTTGTTGATCATTAAAAAAAAAAAATAGTCTTATGCCAACAATAACAATAACTTAGGGGCATAAGTGTATACCAAGAGGTCAACCCTTTCAACTGATGTAGATAAATTTGATGTTGATTTTACCGTTCCACTTACCTCTTGTACCAATCTATTGCAGGCCTGAAATCTTCAAGAATGCTATTGTTGGAGATCAAAACGACAATATGCAAGCACAGGATAATCGACGAGAAGAGGACGAGGTTGACTCGAGCGATGATGATGACCTTCCCCCTCTAGAAGCCAACACGAACAGAGATAAACCCTTATTCTTACAACCACATGCAGATTCAGAGTCTGATTCAGACTCTTAACTTATAAATTAATTTCAAGGCCATCATTTTTTTTTATTTCATACTAAACTTGTATGAATATTCATCCTGATCGTTTGTCCCTCAATTATAATTTTGTGAAATCTCAGACCGCCTATTCTCAAACCCTTATGTGTGATCTGTAAAAATTAGTGGAGAATAAGAATTTCTGAAATAAGGCAAAATACCAATTTGAAAGTTGAAAAACATTTTTTAGGTACAACATTTATGGCTGGGGAG

mRNA sequence

GAAACAAAACCCTAGCCCTTGCATCAAACCCTCACTCCGACGACCTACACTCCACGCCACTTCTTTTCCTGCGCAGCGTCTCCCAATCCGTCCCAGGAGCTCATCGCCGCCGCCGCCGCCGCCGACTTTCTTCCGGCCACTTCAAGCTCCCTCGCCAGCTCCGATTTCATTGAAGAACCCTAGTTGAAGCCGAATCACGGATAGAGATGAAGGGTGGAAGAAAAAACTTGCAGAGGGCATCGGAGCAACATATCGCAAGCCTCGAAAACGGTCATAGCATCATGCAGGTTGTCTCAATTCGTGGTTCCAATCTAATCGAGGTAATGGATGCACTGGGCGAGAAATCACTGGCATTATTTCCTGCCAAGTTTCAAAAGAGTATGTGGATAAAGCGAGGGAGTTTTGTTGTAGTTGATGAAAGTGGAAAGAAGACTGCTCTTGAATCTGGAAGCAAGGTTGCATGTATTGTTTCTCGAGTTCTTTATTTTGAACAAGTACGCGAGCTTCAAAAATCACCAGAATGGCCTGAAATCTTCAAGAATGCTATTGTTGGAGATCAAAACGACAATATGCAAGCACAGGATAATCGACGAGAAGAGGACGAGGTTGACTCGAGCGATGATGATGACCTTCCCCCTCTAGAAGCCAACACGAACAGAGATAAACCCTTATTCTTACAACCACATGCAGATTCAGAGTCTGATTCAGACTCTTAACTTATAAATTAATTTCAAGGCCATCATTTTTTTTTATTTCATACTAAACTTGTATGAATATTCATCCTGATCGTTTGTCCCTCAATTATAATTTTGTGAAATCTCAGACCGCCTATTCTCAAACCCTTATGTGTGATCTGTAAAAATTAGTGGAGAATAAGAATTTCTGAAATAAGGCAAAATACCAATTTGAAAGTTGAAAAACATTTTTTAGGTACAACATTTATGGCTGGGGAG

Coding sequence (CDS)

ATGAAGGGTGGAAGAAAAAACTTGCAGAGGGCATCGGAGCAACATATCGCAAGCCTCGAAAACGGTCATAGCATCATGCAGGTTGTCTCAATTCGTGGTTCCAATCTAATCGAGGTAATGGATGCACTGGGCGAGAAATCACTGGCATTATTTCCTGCCAAGTTTCAAAAGAGTATGTGGATAAAGCGAGGGAGTTTTGTTGTAGTTGATGAAAGTGGAAAGAAGACTGCTCTTGAATCTGGAAGCAAGGTTGCATGTATTGTTTCTCGAGTTCTTTATTTTGAACAAGTACGCGAGCTTCAAAAATCACCAGAATGGCCTGAAATCTTCAAGAATGCTATTGTTGGAGATCAAAACGACAATATGCAAGCACAGGATAATCGACGAGAAGAGGACGAGGTTGACTCGAGCGATGATGATGACCTTCCCCCTCTAGAAGCCAACACGAACAGAGATAAACCCTTATTCTTACAACCACATGCAGATTCAGAGTCTGATTCAGACTCTTAA

Protein sequence

MKGGRKNLQRASEQHIASLENGHSIMQVVSIRGSNLIEVMDALGEKSLALFPAKFQKSMWIKRGSFVVVDESGKKTALESGSKVACIVSRVLYFEQVRELQKSPEWPEIFKNAIVGDQNDNMQAQDNRREEDEVDSSDDDDLPPLEANTNRDKPLFLQPHADSESDSDS

Homology

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BLAST of Sed0020097 vs. NCBI nr
Match: XP_038891512.1 (probable RNA-binding protein EIF1AD isoform X1 [Benincasa hispida])

HSP 1 Score: 291.2 bits (744), Expect = 5.8e-75
Identity = 154/172 (89.53%), Postives = 161/172 (93.60%), Query Frame = 0


Query: 1   MKGGRKNLQRASEQHIASLENGHSIMQVVSIRGSNLIEVMDALGEKSLALFPAKFQKSMW 60
           MKGGRKNLQRASEQHI+S+E+GHSIMQVVSIRGSNLIEVMDA GEKSLALFPAKFQKSMW
Sbjct: 1   MKGGRKNLQRASEQHISSIEDGHSIMQVVSIRGSNLIEVMDAQGEKSLALFPAKFQKSMW 60

Query: 61  IKRGSFVVVDESGKKTALESGSKVACIVSRVLYFEQVRELQKSPEWPEIFKNAIVGDQND 120
           IKRGSFVVVDESGKK ALESGSKVACIVSRVLYFEQVRELQKSPEWPEIFKNAIVGDQN+
Sbjct: 61  IKRGSFVVVDESGKKNALESGSKVACIVSRVLYFEQVRELQKSPEWPEIFKNAIVGDQNE 120

Query: 121 NMQAQDNRREED---EVDSSDDDDLPPLEANTNRDKPLFLQPHADSESDSDS 170
           N+QAQ+NR EED   EVDSSDDD LPPLEANTNR KPL LQP  +SESDSDS
Sbjct: 121 NLQAQNNRPEEDEVTEVDSSDDDGLPPLEANTNRTKPLILQPDTESESDSDS 172

[Close]

BLAST of Sed0020097 vs. NCBI nr
Match: XP_023547328.1 (probable RNA-binding protein EIF1AD [Cucurbita pepo subsp. pepo] >KAG7031527.1 putative RNA-binding protein EIF1AD [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 290.0 bits (741), Expect = 1.3e-74
Identity = 149/169 (88.17%), Postives = 158/169 (93.49%), Query Frame = 0


Query: 1   MKGGRKNLQRASEQHIASLENGHSIMQVVSIRGSNLIEVMDALGEKSLALFPAKFQKSMW 60
           MKGGRKNLQRAS QHI  LE+GHSIMQVVSIRGSNLIEVMDA GEKSLALFPAKFQKSMW
Sbjct: 1   MKGGRKNLQRASNQHIVGLEDGHSIMQVVSIRGSNLIEVMDAQGEKSLALFPAKFQKSMW 60

Query: 61  IKRGSFVVVDESGKKTALESGSKVACIVSRVLYFEQVRELQKSPEWPEIFKNAIVGDQND 120
           IKRGSFVVVDESGKK ALESGSKVACIVSRVLYFEQVRELQKSPEWPEIFKNAI GDQN+
Sbjct: 61  IKRGSFVVVDESGKKNALESGSKVACIVSRVLYFEQVRELQKSPEWPEIFKNAITGDQNE 120

Query: 121 NMQAQDNRREEDEVDSSDDDDLPPLEANTNRDKPLFLQPHADSESDSDS 170
           N+QA++NR+EEDE+DSSDDD LPPLEANTNR KPL LQP  ++ESDSDS
Sbjct: 121 NLQAENNRQEEDEIDSSDDDGLPPLEANTNRAKPLILQPEEETESDSDS 169

[Close]

BLAST of Sed0020097 vs. NCBI nr
Match: XP_004146450.1 (probable RNA-binding protein EIF1AD [Cucumis sativus] >KGN50715.1 hypothetical protein Csa_005860 [Cucumis sativus])

HSP 1 Score: 289.7 bits (740), Expect = 1.7e-74
Identity = 151/169 (89.35%), Postives = 160/169 (94.67%), Query Frame = 0


Query: 1   MKGGRKNLQRASEQHIASLENGHSIMQVVSIRGSNLIEVMDALGEKSLALFPAKFQKSMW 60
           MKGGRKNLQRASE HIASLE+GHSIMQVVSIRGSNLIEVMDA GEKSLALFPAKFQKSMW
Sbjct: 1   MKGGRKNLQRASEHHIASLEDGHSIMQVVSIRGSNLIEVMDAQGEKSLALFPAKFQKSMW 60

Query: 61  IKRGSFVVVDESGKKTALESGSKVACIVSRVLYFEQVRELQKSPEWPEIFKNAIVGDQND 120
           IKRGSFVVVDESGKK ALESGSKVACIVSRVLYFEQ+RELQKSPEWPEIFKNAIVGD+N+
Sbjct: 61  IKRGSFVVVDESGKKNALESGSKVACIVSRVLYFEQIRELQKSPEWPEIFKNAIVGDRNE 120

Query: 121 NMQAQDNRREEDEVDSSDDDDLPPLEANTNRDKPLFLQPHADSESDSDS 170
           N+QAQ+N+  EDEV+SSDDD LPPLEANTNR KPL LQP A+SESDSDS
Sbjct: 121 NLQAQNNQPGEDEVNSSDDDGLPPLEANTNRAKPLILQPDAESESDSDS 169

[Close]

BLAST of Sed0020097 vs. NCBI nr
Match: XP_022991942.1 (probable RNA-binding protein EIF1AD [Cucurbita maxima])

HSP 1 Score: 289.7 bits (740), Expect = 1.7e-74
Identity = 148/169 (87.57%), Postives = 158/169 (93.49%), Query Frame = 0


Query: 1   MKGGRKNLQRASEQHIASLENGHSIMQVVSIRGSNLIEVMDALGEKSLALFPAKFQKSMW 60
           MKGGRKNLQRAS QHI  LE+GHSIMQVVS+RGSNLIEVMDA GEKSLALFPAKFQKSMW
Sbjct: 1   MKGGRKNLQRASNQHIVGLEDGHSIMQVVSVRGSNLIEVMDAQGEKSLALFPAKFQKSMW 60

Query: 61  IKRGSFVVVDESGKKTALESGSKVACIVSRVLYFEQVRELQKSPEWPEIFKNAIVGDQND 120
           IKRGSFVVVDESGKK ALESGSKVACIVSRVLYFEQVRELQKSPEWPEIFKNAI GDQN+
Sbjct: 61  IKRGSFVVVDESGKKNALESGSKVACIVSRVLYFEQVRELQKSPEWPEIFKNAITGDQNE 120

Query: 121 NMQAQDNRREEDEVDSSDDDDLPPLEANTNRDKPLFLQPHADSESDSDS 170
           N+QA++NR+EEDE+DSSDDD LPPLEANTNR KPL LQP  ++ESDSDS
Sbjct: 121 NLQAENNRQEEDEIDSSDDDGLPPLEANTNRAKPLILQPEEETESDSDS 169

[Close]

BLAST of Sed0020097 vs. NCBI nr
Match: XP_022942753.1 (probable RNA-binding protein EIF1AD [Cucurbita moschata])

HSP 1 Score: 287.3 bits (734), Expect = 8.3e-74
Identity = 147/169 (86.98%), Postives = 157/169 (92.90%), Query Frame = 0


Query: 1   MKGGRKNLQRASEQHIASLENGHSIMQVVSIRGSNLIEVMDALGEKSLALFPAKFQKSMW 60
           MKGGRKNLQRAS QHI  LE+GHSIMQVVSIRGSNLIEVMDA GEKSLALFPAKFQKSMW
Sbjct: 1   MKGGRKNLQRASNQHIVGLEDGHSIMQVVSIRGSNLIEVMDAQGEKSLALFPAKFQKSMW 60

Query: 61  IKRGSFVVVDESGKKTALESGSKVACIVSRVLYFEQVRELQKSPEWPEIFKNAIVGDQND 120
           IKRGSFVVVDESGKK ALESGSKVACIVSRVLYFEQVR+LQKSPEWPEIFKNAI GDQN+
Sbjct: 61  IKRGSFVVVDESGKKNALESGSKVACIVSRVLYFEQVRQLQKSPEWPEIFKNAITGDQNE 120

Query: 121 NMQAQDNRREEDEVDSSDDDDLPPLEANTNRDKPLFLQPHADSESDSDS 170
           N+Q ++NR+EEDE+DSSDDD LPPLEANTNR KPL LQP  ++ESDSDS
Sbjct: 121 NLQTENNRQEEDEIDSSDDDGLPPLEANTNRAKPLILQPEEETESDSDS 169

[Close]

BLAST of Sed0020097 vs. ExPASy Swiss-Prot
Match: Q7SY07 (Probable RNA-binding protein EIF1AD OS=Danio rerio OX=7955 GN=eif1ad PE=2 SV=1)

HSP 1 Score: 84.7 bits (208), Expect = 1.1e-15
Identity = 54/166 (32.53%), Postives = 91/166 (54.82%), Query Frame = 0


Query: 5   RKNLQRASEQHIASLENGHSIMQVVSIRGSNLIEVMDALGEKSLALFPAKFQKSMWIKRG 64
           RK++ +   +   +      IM+V+   G+NL E +   GE+ L   P KF+K++WIKRG
Sbjct: 7   RKHVVKEVLEDYVTPTEDQQIMRVLGSNGNNLHEAVTGSGERFLLSMPTKFRKNIWIKRG 66

Query: 65  SFVVVDESGKKTALESGSKVACIVSRVLYFEQVRELQKSPEWPEIF-KNAIVGDQNDNMQ 124
            FV+VD       ++ G KV   +S +LY + ++ L+K   WPE F ++   G++N+  Q
Sbjct: 67  DFVIVD------PIKEGGKVKGEISFILYRDHIQHLRKLGVWPEGFQEDRTSGERNEGTQ 126

Query: 125 AQ-DNRREEDEVDSSDDDDLPPLEANTNRDKPLFLQPHADSESDSD 169
            +    +EE+E DS  +DD   L  NTNR   L+ +   +++ D +
Sbjct: 127 KERSEEKEEEEGDSESEDDDSDLFVNTNRATVLYSESEEETDEDEE 166

[Close]

BLAST of Sed0020097 vs. ExPASy Swiss-Prot
Match: Q58CY2 (Probable RNA-binding protein EIF1AD OS=Bos taurus OX=9913 GN=EIF1AD PE=2 SV=1)

HSP 1 Score: 76.3 bits (186), Expect = 3.8e-13
Identity = 57/150 (38.00%), Postives = 79/150 (52.67%), Query Frame = 0


Query: 25  IMQVVSIRGSNLIEVMDALGEKSLALFPAKFQKSMWIKRGSFVVVDESGKKTALESGSKV 84
           I++V+   G+NL EV  A G++ L   P+K++K++WIKRG F++VD       +E G KV
Sbjct: 27  IVRVLRTPGNNLHEVETAQGQRFLVSMPSKYRKNIWIKRGDFLIVD------PIEEGEKV 86

Query: 85  ACIVSRVLYFEQVRELQKSPEWPEIFKNAIVGDQND-NMQAQDNRREE-----DEVDSSD 144
              +S VL  + VR LQK   WPE F      D ND N Q Q     E     +E  S D
Sbjct: 87  KAEISFVLCKDHVRSLQKDGHWPEAFSQVTEKDNNDRNRQTQPELPAEPQSSGEESSSED 146

Query: 145 DDDLPPLEANTNRDKPLFLQPHADSESDSD 169
           D D   L  NTNR      + + +SE +S+
Sbjct: 147 DSD---LFVNTNR------RQYHESEEESE 161

[Close]

BLAST of Sed0020097 vs. ExPASy Swiss-Prot
Match: Q0V9J5 (Probable RNA-binding protein EIF1AD OS=Xenopus tropicalis OX=8364 GN=eif1ad PE=2 SV=1)

HSP 1 Score: 74.7 bits (182), Expect = 1.1e-12
Identity = 53/153 (34.64%), Postives = 84/153 (54.90%), Query Frame = 0


Query: 25  IMQVVSIRGSNLIEVMDALGEKSLALFPAKFQKSMWIKRGSFVVVDESGKKTALESGSKV 84
           I++V+   G+NL EV  + GE+ LA  P KF+K++WIKRG F++VD       +  G KV
Sbjct: 27  IVKVLGSPGNNLHEVETSEGERFLASMPTKFRKNIWIKRGDFLIVD------PIAEGEKV 86

Query: 85  ACIVSRVLYFEQVRELQKSPEWPEIF---KNAIVGDQNDN-----MQAQDNRREEDEVDS 144
              ++ +LY +  R LQK   WPE F   K  +V  +N+N      +A    + +++ + 
Sbjct: 87  KAEIAFILYKDHQRLLQKEGLWPEGFTQDKTGVVTKENENNGIQSTEALSTAQAKEQGED 146

Query: 145 SDDDDLPPLEANTNRDKPLFLQPHADSESDSDS 170
           S+ DD   L  NTNR      +  ++SE +S+S
Sbjct: 147 SETDDDSGLFVNTNRVHYEDSEEESESEEESES 173

[Close]

BLAST of Sed0020097 vs. ExPASy Swiss-Prot
Match: Q8N9N8 (Probable RNA-binding protein EIF1AD OS=Homo sapiens OX=9606 GN=EIF1AD PE=1 SV=1)

HSP 1 Score: 73.9 bits (180), Expect = 1.9e-12
Identity = 56/158 (35.44%), Postives = 83/158 (52.53%), Query Frame = 0


Query: 14  QHIASLENGHSIMQVVSIRGSNLIEVMDALGEKSLALFPAKFQKSMWIKRGSFVVVDESG 73
           +HI   +    I++V+   G+NL EV  A G++ L   P+K++K++WIKRG F++VD   
Sbjct: 17  EHIVPSDQ-QQIVRVLRTPGNNLHEVETAQGQRFLVSMPSKYRKNIWIKRGDFLIVD--- 76

Query: 74  KKTALESGSKVACIVSRVLYFEQVRELQKSPEWPEIFKNAIVGDQNDNMQAQDNRREEDE 133
               +E G KV   +S VL  + VR LQK   WPE F        N N Q Q     E +
Sbjct: 77  ---PIEEGEKVKAEISFVLCKDHVRSLQKEGFWPEAFSEVAEKHNNRNRQTQPELPAEPQ 136

Query: 134 V---DSSDDDDLPPLEANTNRDKPLFLQPHADSESDSD 169
           +   +SS +DD   L  NTNR      + + +SE +S+
Sbjct: 137 LSGEESSSEDD-SDLFVNTNR------RQYHESEEESE 160

[Close]

BLAST of Sed0020097 vs. ExPASy Swiss-Prot
Match: Q4R354 (Probable RNA-binding protein EIF1AD OS=Macaca fascicularis OX=9541 GN=EIF1AD PE=2 SV=1)

HSP 1 Score: 73.9 bits (180), Expect = 1.9e-12
Identity = 56/158 (35.44%), Postives = 83/158 (52.53%), Query Frame = 0


Query: 14  QHIASLENGHSIMQVVSIRGSNLIEVMDALGEKSLALFPAKFQKSMWIKRGSFVVVDESG 73
           +HI   +    I++V+   G+NL EV  A G++ L   P+K++K++WIKRG F++VD   
Sbjct: 17  EHIVPSDQ-QQIVRVLRTPGNNLHEVETAQGQRFLVSMPSKYRKNIWIKRGDFLIVD--- 76

Query: 74  KKTALESGSKVACIVSRVLYFEQVRELQKSPEWPEIFKNAIVGDQNDNMQAQDNRREEDE 133
               +E G KV   +S VL  + VR LQK   WPE F        N N Q Q     E +
Sbjct: 77  ---PIEEGEKVKAEISFVLCKDHVRSLQKEGFWPEAFSEVAEKHNNRNRQTQPELPAEPQ 136

Query: 134 V---DSSDDDDLPPLEANTNRDKPLFLQPHADSESDSD 169
           +   +SS +DD   L  NTNR      + + +SE +S+
Sbjct: 137 LSGEESSSEDD-SDLFVNTNR------RQYHESEEESE 160

[Close]

BLAST of Sed0020097 vs. ExPASy TrEMBL
Match: A0A6J1JNB5 (probable RNA-binding protein EIF1AD OS=Cucurbita maxima OX=3661 GN=LOC111488431 PE=3 SV=1)

HSP 1 Score: 289.7 bits (740), Expect = 8.1e-75
Identity = 148/169 (87.57%), Postives = 158/169 (93.49%), Query Frame = 0


Query: 1   MKGGRKNLQRASEQHIASLENGHSIMQVVSIRGSNLIEVMDALGEKSLALFPAKFQKSMW 60
           MKGGRKNLQRAS QHI  LE+GHSIMQVVS+RGSNLIEVMDA GEKSLALFPAKFQKSMW
Sbjct: 1   MKGGRKNLQRASNQHIVGLEDGHSIMQVVSVRGSNLIEVMDAQGEKSLALFPAKFQKSMW 60

Query: 61  IKRGSFVVVDESGKKTALESGSKVACIVSRVLYFEQVRELQKSPEWPEIFKNAIVGDQND 120
           IKRGSFVVVDESGKK ALESGSKVACIVSRVLYFEQVRELQKSPEWPEIFKNAI GDQN+
Sbjct: 61  IKRGSFVVVDESGKKNALESGSKVACIVSRVLYFEQVRELQKSPEWPEIFKNAITGDQNE 120

Query: 121 NMQAQDNRREEDEVDSSDDDDLPPLEANTNRDKPLFLQPHADSESDSDS 170
           N+QA++NR+EEDE+DSSDDD LPPLEANTNR KPL LQP  ++ESDSDS
Sbjct: 121 NLQAENNRQEEDEIDSSDDDGLPPLEANTNRAKPLILQPEEETESDSDS 169

[Close]

BLAST of Sed0020097 vs. ExPASy TrEMBL
Match: A0A0A0KM30 (S1-like domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_5G218810 PE=3 SV=1)

HSP 1 Score: 289.7 bits (740), Expect = 8.1e-75
Identity = 151/169 (89.35%), Postives = 160/169 (94.67%), Query Frame = 0


Query: 1   MKGGRKNLQRASEQHIASLENGHSIMQVVSIRGSNLIEVMDALGEKSLALFPAKFQKSMW 60
           MKGGRKNLQRASE HIASLE+GHSIMQVVSIRGSNLIEVMDA GEKSLALFPAKFQKSMW
Sbjct: 1   MKGGRKNLQRASEHHIASLEDGHSIMQVVSIRGSNLIEVMDAQGEKSLALFPAKFQKSMW 60

Query: 61  IKRGSFVVVDESGKKTALESGSKVACIVSRVLYFEQVRELQKSPEWPEIFKNAIVGDQND 120
           IKRGSFVVVDESGKK ALESGSKVACIVSRVLYFEQ+RELQKSPEWPEIFKNAIVGD+N+
Sbjct: 61  IKRGSFVVVDESGKKNALESGSKVACIVSRVLYFEQIRELQKSPEWPEIFKNAIVGDRNE 120

Query: 121 NMQAQDNRREEDEVDSSDDDDLPPLEANTNRDKPLFLQPHADSESDSDS 170
           N+QAQ+N+  EDEV+SSDDD LPPLEANTNR KPL LQP A+SESDSDS
Sbjct: 121 NLQAQNNQPGEDEVNSSDDDGLPPLEANTNRAKPLILQPDAESESDSDS 169

[Close]

BLAST of Sed0020097 vs. ExPASy TrEMBL
Match: A0A6J1FVM0 (probable RNA-binding protein EIF1AD OS=Cucurbita moschata OX=3662 GN=LOC111447695 PE=3 SV=1)

HSP 1 Score: 287.3 bits (734), Expect = 4.0e-74
Identity = 147/169 (86.98%), Postives = 157/169 (92.90%), Query Frame = 0


Query: 1   MKGGRKNLQRASEQHIASLENGHSIMQVVSIRGSNLIEVMDALGEKSLALFPAKFQKSMW 60
           MKGGRKNLQRAS QHI  LE+GHSIMQVVSIRGSNLIEVMDA GEKSLALFPAKFQKSMW
Sbjct: 1   MKGGRKNLQRASNQHIVGLEDGHSIMQVVSIRGSNLIEVMDAQGEKSLALFPAKFQKSMW 60

Query: 61  IKRGSFVVVDESGKKTALESGSKVACIVSRVLYFEQVRELQKSPEWPEIFKNAIVGDQND 120
           IKRGSFVVVDESGKK ALESGSKVACIVSRVLYFEQVR+LQKSPEWPEIFKNAI GDQN+
Sbjct: 61  IKRGSFVVVDESGKKNALESGSKVACIVSRVLYFEQVRQLQKSPEWPEIFKNAITGDQNE 120

Query: 121 NMQAQDNRREEDEVDSSDDDDLPPLEANTNRDKPLFLQPHADSESDSDS 170
           N+Q ++NR+EEDE+DSSDDD LPPLEANTNR KPL LQP  ++ESDSDS
Sbjct: 121 NLQTENNRQEEDEIDSSDDDGLPPLEANTNRAKPLILQPEEETESDSDS 169

[Close]

BLAST of Sed0020097 vs. ExPASy TrEMBL
Match: A0A1S3C3W3 (probable RNA-binding protein EIF1AD OS=Cucumis melo OX=3656 GN=LOC103496721 PE=3 SV=1)

HSP 1 Score: 282.0 bits (720), Expect = 1.7e-72
Identity = 148/169 (87.57%), Postives = 157/169 (92.90%), Query Frame = 0


Query: 1   MKGGRKNLQRASEQHIASLENGHSIMQVVSIRGSNLIEVMDALGEKSLALFPAKFQKSMW 60
           MKGGRKNLQRASE HIASLE+GHSIM VVSIRGSNLIEVMDA G KSLALFPAKFQKSMW
Sbjct: 1   MKGGRKNLQRASEHHIASLEDGHSIMLVVSIRGSNLIEVMDAQGGKSLALFPAKFQKSMW 60

Query: 61  IKRGSFVVVDESGKKTALESGSKVACIVSRVLYFEQVRELQKSPEWPEIFKNAIVGDQND 120
           IKRGSFVVVDESGKK ALESGSKVACIVSRVLYFEQVRELQKSP WPEIFKNAIVGD+N+
Sbjct: 61  IKRGSFVVVDESGKKNALESGSKVACIVSRVLYFEQVRELQKSPGWPEIFKNAIVGDRNE 120

Query: 121 NMQAQDNRREEDEVDSSDDDDLPPLEANTNRDKPLFLQPHADSESDSDS 170
           N++AQ+N+ EEDEV+SSDDD LPPLEANTNR KPL LQP  +SESDSDS
Sbjct: 121 NLRAQNNQSEEDEVNSSDDDGLPPLEANTNRAKPLILQPDGESESDSDS 169

[Close]

BLAST of Sed0020097 vs. ExPASy TrEMBL
Match: A0A5D3DQ84 (Putative RNA-binding protein EIF1AD OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold436G00330 PE=3 SV=1)

HSP 1 Score: 282.0 bits (720), Expect = 1.7e-72
Identity = 148/169 (87.57%), Postives = 157/169 (92.90%), Query Frame = 0


Query: 1   MKGGRKNLQRASEQHIASLENGHSIMQVVSIRGSNLIEVMDALGEKSLALFPAKFQKSMW 60
           MKGGRKNLQRASE HIASLE+GHSIM VVSIRGSNLIEVMDA G KSLALFPAKFQKSMW
Sbjct: 1   MKGGRKNLQRASEHHIASLEDGHSIMLVVSIRGSNLIEVMDAQGGKSLALFPAKFQKSMW 60

Query: 61  IKRGSFVVVDESGKKTALESGSKVACIVSRVLYFEQVRELQKSPEWPEIFKNAIVGDQND 120
           IKRGSFVVVDESGKK ALESGSKVACIVSRVLYFEQVRELQKSP WPEIFKNAIVGD+N+
Sbjct: 61  IKRGSFVVVDESGKKNALESGSKVACIVSRVLYFEQVRELQKSPGWPEIFKNAIVGDRNE 120

Query: 121 NMQAQDNRREEDEVDSSDDDDLPPLEANTNRDKPLFLQPHADSESDSDS 170
           N++AQ+N+ EEDEV+SSDDD LPPLEANTNR KPL LQP  +SESDSDS
Sbjct: 121 NLRAQNNQSEEDEVNSSDDDGLPPLEANTNRAKPLILQPDGESESDSDS 169

[Close]

BLAST of Sed0020097 vs. TAIR 10
Match: AT2G40780.1 (Nucleic acid-binding, OB-fold-like protein )

HSP 1 Score: 176.0 bits (445), Expect = 2.5e-44
Identity = 99/172 (57.56%), Postives = 131/172 (76.16%), Query Frame = 0


Query: 1   MKGGRKNLQRASEQHIASLENGHSIMQVVSIRGSNLIEVMDALGEKSLALFPAKFQKSMW 60
           M  GR+NL++A+     +LE   SI QVVS+RGSN IE+MDA GE SLALFPAKF++SMW
Sbjct: 1   MNRGRRNLKQAASDQDFTLEECQSIAQVVSLRGSNQIEIMDAKGENSLALFPAKFRESMW 60

Query: 61  IKRGSFVVVDESGKKTALESGSKVACIVSRVLYFEQVRELQKSPEWPEIFKNA--IVGDQ 120
           I+RGSFVV+D +GK+ A ESGSKV  IV +VL+FEQVR LQKSPEWPEIFK+   I  ++
Sbjct: 61  IRRGSFVVIDHTGKEKAQESGSKVTSIVCKVLFFEQVRLLQKSPEWPEIFKDTRPIPAEK 120

Query: 121 NDNMQAQDNRREEDEVDSSDDDD-LPPLEANTNRDKPLFLQPHADSESDSDS 170
           +  ++  +   ++ EVDSSDDDD +PPL+ANTNR +P  ++  A+++S SDS
Sbjct: 121 SSPIEQHE---DDGEVDSSDDDDGMPPLQANTNRLRPFGVKCDAETDSGSDS 169

[Close]

BLAST of Sed0020097 vs. TAIR 10
Match: AT2G40780.2 (Nucleic acid-binding, OB-fold-like protein )

HSP 1 Score: 142.1 bits (357), Expect = 4.0e-34
Identity = 79/133 (59.40%), Postives = 104/133 (78.20%), Query Frame = 0


Query: 40  MDALGEKSLALFPAKFQKSMWIKRGSFVVVDESGKKTALESGSKVACIVSRVLYFEQVRE 99
           MDA GE SLALFPAKF++SMWI+RGSFVV+D +GK+ A ESGSKV  IV +VL+FEQVR 
Sbjct: 1   MDAKGENSLALFPAKFRESMWIRRGSFVVIDHTGKEKAQESGSKVTSIVCKVLFFEQVRL 60

Query: 100 LQKSPEWPEIFKNA--IVGDQNDNMQAQDNRREEDEVDSSDDDD-LPPLEANTNRDKPLF 159
           LQKSPEWPEIFK+   I  +++  ++  +   ++ EVDSSDDDD +PPL+ANTNR +P  
Sbjct: 61  LQKSPEWPEIFKDTRPIPAEKSSPIEQHE---DDGEVDSSDDDDGMPPLQANTNRLRPFG 120

Query: 160 LQPHADSESDSDS 170
           ++  A+++S SDS
Sbjct: 121 VKCDAETDSGSDS 130

[Close]

BLAST of Sed0020097 vs. TAIR 10
Match: AT2G40910.1 (F-box and associated interaction domains-containing protein )

HSP 1 Score: 43.5 bits (101), Expect = 1.9e-04
Identity = 25/59 (42.37%), Postives = 38/59 (64.41%), Query Frame = 0


Query: 1  MKGGRKNLQRASEQHIASLENGHSIMQVVSIRGSNLIEVMDALGEKSLALFPAKFQKSM 60
          MK  R++L++A+E   +  E   S+ QVVS+R S+ +++MD  G+ SLAL PAK    M
Sbjct: 1  MKRRRRDLKQAAE---SEQEECQSVPQVVSLRDSDQLQIMDEKGDNSLALLPAKLPMRM 56

The following BLAST results are available for this feature:

BLAST of Sed0020097 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038891512.1	5.8e-75	89.53	probable RNA-binding protein EIF1AD isoform X1 [Benincasa hispida]	[more]
XP_023547328.1	1.3e-74	88.17	probable RNA-binding protein EIF1AD [Cucurbita pepo subsp. pepo] >KAG7031527.1 p...	[more]
XP_004146450.1	1.7e-74	89.35	probable RNA-binding protein EIF1AD [Cucumis sativus] >KGN50715.1 hypothetical p...	[more]
XP_022991942.1	1.7e-74	87.57	probable RNA-binding protein EIF1AD [Cucurbita maxima]	[more]
XP_022942753.1	8.3e-74	86.98	probable RNA-binding protein EIF1AD [Cucurbita moschata]	[more]

BLAST of Sed0020097 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q7SY07	1.1e-15	32.53	Probable RNA-binding protein EIF1AD OS=Danio rerio OX=7955 GN=eif1ad PE=2 SV=1	[more]
Q58CY2	3.8e-13	38.00	Probable RNA-binding protein EIF1AD OS=Bos taurus OX=9913 GN=EIF1AD PE=2 SV=1	[more]
Q0V9J5	1.1e-12	34.64	Probable RNA-binding protein EIF1AD OS=Xenopus tropicalis OX=8364 GN=eif1ad PE=2...	[more]
Q8N9N8	1.9e-12	35.44	Probable RNA-binding protein EIF1AD OS=Homo sapiens OX=9606 GN=EIF1AD PE=1 SV=1	[more]
Q4R354	1.9e-12	35.44	Probable RNA-binding protein EIF1AD OS=Macaca fascicularis OX=9541 GN=EIF1AD PE=...	[more]

BLAST of Sed0020097 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1JNB5	8.1e-75	87.57	probable RNA-binding protein EIF1AD OS=Cucurbita maxima OX=3661 GN=LOC111488431 ...	[more]
A0A0A0KM30	8.1e-75	89.35	S1-like domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_5G218810 PE=...	[more]
A0A6J1FVM0	4.0e-74	86.98	probable RNA-binding protein EIF1AD OS=Cucurbita moschata OX=3662 GN=LOC11144769...	[more]
A0A1S3C3W3	1.7e-72	87.57	probable RNA-binding protein EIF1AD OS=Cucumis melo OX=3656 GN=LOC103496721 PE=3...	[more]
A0A5D3DQ84	1.7e-72	87.57	Putative RNA-binding protein EIF1AD OS=Cucumis melo var. makuwa OX=1194695 GN=E5...	[more]

BLAST of Sed0020097 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G40780.1	2.5e-44	57.56	Nucleic acid-binding, OB-fold-like protein	[more]
AT2G40780.2	4.0e-34	59.40	Nucleic acid-binding, OB-fold-like protein	[more]
AT2G40910.1	1.9e-04	42.37	F-box and associated interaction domains-containing protein	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001253	Translation initiation factor 1A (eIF-1A)	SMART	SM00652	eIF1neu4	coord: 18..107 e-value: 5.9E-26 score: 102.2
IPR006196	RNA-binding domain, S1, IF1 type	PFAM	PF01176	eIF-1a	coord: 23..72 e-value: 1.7E-9 score: 37.4
IPR006196	RNA-binding domain, S1, IF1 type	PROSITE	PS50832	S1_IF1_TYPE	coord: 12..92 score: 9.157246
None	No IPR available	GENE3D	2.40.50.140		coord: 1..142 e-value: 5.0E-28 score: 99.3
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 116..169
IPR039294	Probable RNA-binding protein EIF1AD	PANTHER	PTHR21641	TRANSLATION INITIATION FACTOR-RELATED	coord: 1..168
IPR012340	Nucleic acid-binding, OB-fold	SUPERFAMILY	50249	Nucleic acid-binding proteins	coord: 13..141

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0020097.1	Sed0020097.1	mRNA
Sed0020097.2	Sed0020097.2	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006413	translational initiation
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003743	translation initiation factor activity
molecular_function	GO:0003723	RNA binding