Sed0020064 (gene) Chayote v1

Overview
NameSed0020064
Typegene
OrganismSechium edule (Chayote v1)
DescriptionCytochrome c-type biogenesis protein
LocationLG07: 11247664 .. 11248084 (-)
RNA-Seq ExpressionSed0020064
SyntenySed0020064
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAACTTGCTTGATATTGGGTTGTATTTTGTAATATCACTGCAGTTGATTCGCGATGAGATTCGGTCGGGGAAAACAGACATCCATAAAAAGCTTGAGAATGAACATGGAGAGTCACTCCTATACACCCCAAAGTTTGACCTTCAAACTGCAGCATTATGGCTATCACAGGTCAGTTAATATCAGTAAGAAATACAATGTTAAGAAACATATCTGATATCTCCCTTTTTATTCTAATTTTAGTTTTGAATTTGATACTTTGGATTAGGATTATGTGTTAGTGGCTGGTGCTGCTGCAGGAGTATGGGCTTATAATAAGCACAAACAAAAATCTAACATTCACATCATGGCTTTAAATCTAGTCAGGGGTGTTCCATTGATCCCTAAAGAGAACCAAACCATGTTAGATCTGCTAGCTTGA

mRNA sequence

ATGAACTTGCTTGATATTGGGTTGTATTTTGTAATATCACTGCAGTTGATTCGCGATGAGATTCGGTCGGGGAAAACAGACATCCATAAAAAGCTTGAGAATGAACATGGAGAGTCACTCCTATACACCCCAAAGTTTGACCTTCAAACTGCAGCATTATGGCTATCACAGGATTATGTGTTAGTGGCTGGTGCTGCTGCAGGAGTATGGGCTTATAATAAGCACAAACAAAAATCTAACATTCACATCATGGCTTTAAATCTAGTCAGGGGTGTTCCATTGATCCCTAAAGAGAACCAAACCATGTTAGATCTGCTAGCTTGA

Coding sequence (CDS)

ATGAACTTGCTTGATATTGGGTTGTATTTTGTAATATCACTGCAGTTGATTCGCGATGAGATTCGGTCGGGGAAAACAGACATCCATAAAAAGCTTGAGAATGAACATGGAGAGTCACTCCTATACACCCCAAAGTTTGACCTTCAAACTGCAGCATTATGGCTATCACAGGATTATGTGTTAGTGGCTGGTGCTGCTGCAGGAGTATGGGCTTATAATAAGCACAAACAAAAATCTAACATTCACATCATGGCTTTAAATCTAGTCAGGGGTGTTCCATTGATCCCTAAAGAGAACCAAACCATGTTAGATCTGCTAGCTTGA

Protein sequence

MNLLDIGLYFVISLQLIRDEIRSGKTDIHKKLENEHGESLLYTPKFDLQTAALWLSQDYVLVAGAAAGVWAYNKHKQKSNIHIMALNLVRGVPLIPKENQTMLDLLA
Homology
BLAST of Sed0020064 vs. NCBI nr
Match: XP_038904619.1 (cytochrome c-type biogenesis CcmH-like mitochondrial protein [Benincasa hispida] >XP_038904620.1 cytochrome c-type biogenesis CcmH-like mitochondrial protein [Benincasa hispida] >XP_038904621.1 cytochrome c-type biogenesis CcmH-like mitochondrial protein [Benincasa hispida])

HSP 1 Score: 153.7 bits (387), Expect = 9.1e-34
Identity = 78/99 (78.79%), Postives = 90/99 (90.91%), Query Frame = 0

Query: 11  VISLQLIRDEIRSGKTD--IHKKLENEHGESLLYTPKFDLQTAALWLSQDYVLVAGAAAG 70
           ++  +LIRDEIRSGKTD  I+KKLEN++GE++LYTPKFDLQTAALWLS   VLVAGAAAG
Sbjct: 44  ILLRKLIRDEIRSGKTDKEIYKKLENDYGETVLYTPKFDLQTAALWLSP--VLVAGAAAG 103

Query: 71  VWAYNKHKQKSNIHIMALNLVRGVPLIPKENQTMLDLLA 108
           VWAY+KHKQ+SN+HIMALNLVRGVPL PKE QTMLDLL+
Sbjct: 104 VWAYSKHKQRSNVHIMALNLVRGVPLTPKEKQTMLDLLS 140

BLAST of Sed0020064 vs. NCBI nr
Match: XP_008452301.1 (PREDICTED: cytochrome c-type biogenesis CcmH-like mitochondrial protein [Cucumis melo] >XP_008452302.1 PREDICTED: cytochrome c-type biogenesis CcmH-like mitochondrial protein [Cucumis melo] >XP_016901245.1 PREDICTED: cytochrome c-type biogenesis CcmH-like mitochondrial protein [Cucumis melo] >KAA0046887.1 cytochrome c-type biogenesis CcmH-like mitochondrial protein [Cucumis melo var. makuwa] >TYK03260.1 cytochrome c-type biogenesis CcmH-like mitochondrial protein [Cucumis melo var. makuwa])

HSP 1 Score: 151.0 bits (380), Expect = 5.9e-33
Identity = 76/99 (76.77%), Postives = 88/99 (88.89%), Query Frame = 0

Query: 11  VISLQLIRDEIRSGKTD--IHKKLENEHGESLLYTPKFDLQTAALWLSQDYVLVAGAAAG 70
           ++  +LIRDEIRSGKTD  I+KKLEN++GE++LYTPKFDLQTA LWLS   VLVAGAA G
Sbjct: 44  ILLRKLIRDEIRSGKTDKEIYKKLENDYGETILYTPKFDLQTAGLWLSP--VLVAGAAVG 103

Query: 71  VWAYNKHKQKSNIHIMALNLVRGVPLIPKENQTMLDLLA 108
           VWAY+KHKQ+SN+HIMALNLVRGVPL PKE QTMLDLL+
Sbjct: 104 VWAYSKHKQRSNVHIMALNLVRGVPLTPKEKQTMLDLLS 140

BLAST of Sed0020064 vs. NCBI nr
Match: XP_022152937.1 (cytochrome c-type biogenesis CcmH-like mitochondrial protein [Momordica charantia])

HSP 1 Score: 150.6 bits (379), Expect = 7.7e-33
Identity = 76/98 (77.55%), Postives = 89/98 (90.82%), Query Frame = 0

Query: 11  VISLQLIRDEIRSGKTD--IHKKLENEHGESLLYTPKFDLQTAALWLSQDYVLVAGAAAG 70
           ++  +LIRDEIRSGK+D  I++KLE+++GE++LYTPKFDLQTAALWLS   VLVAGAAAG
Sbjct: 44  ILLRKLIRDEIRSGKSDKEIYRKLEDDYGETVLYTPKFDLQTAALWLSP--VLVAGAAAG 103

Query: 71  VWAYNKHKQKSNIHIMALNLVRGVPLIPKENQTMLDLL 107
           VWAYNKHKQK+N+HIMALNLVRGVPL PKE QTMLDLL
Sbjct: 104 VWAYNKHKQKTNVHIMALNLVRGVPLTPKEKQTMLDLL 139

BLAST of Sed0020064 vs. NCBI nr
Match: XP_004149299.1 (cytochrome c-type biogenesis CcmH-like mitochondrial protein [Cucumis sativus] >KGN56203.1 hypothetical protein Csa_010849 [Cucumis sativus])

HSP 1 Score: 148.7 bits (374), Expect = 2.9e-32
Identity = 74/99 (74.75%), Postives = 88/99 (88.89%), Query Frame = 0

Query: 11  VISLQLIRDEIRSGKT--DIHKKLENEHGESLLYTPKFDLQTAALWLSQDYVLVAGAAAG 70
           ++  +LIRDEIRSGK+  DI+KKLEN++GE++LYTPKFDLQTA LWLS   V+VAGAA G
Sbjct: 44  ILLRKLIRDEIRSGKSDKDIYKKLENDYGETILYTPKFDLQTAGLWLSP--VIVAGAAVG 103

Query: 71  VWAYNKHKQKSNIHIMALNLVRGVPLIPKENQTMLDLLA 108
           VWAY+KHKQ+SN+HIMALNLVRGVPL PKE QTMLDLL+
Sbjct: 104 VWAYSKHKQRSNVHIMALNLVRGVPLTPKEKQTMLDLLS 140

BLAST of Sed0020064 vs. NCBI nr
Match: XP_022992426.1 (cytochrome c-type biogenesis CcmH-like mitochondrial protein isoform X2 [Cucurbita maxima])

HSP 1 Score: 148.3 bits (373), Expect = 3.8e-32
Identity = 78/102 (76.47%), Postives = 91/102 (89.22%), Query Frame = 0

Query: 9   YFVISLQ-LIRDEIRSGKTD--IHKKLENEHGESLLYTPKFDLQTAALWLSQDYVLVAGA 68
           Y +IS + LIRDEIRSGK+D  I KKLEN++GE++LYTPKFDLQTAALWLS   VLVAGA
Sbjct: 17  YMMISHRFLIRDEIRSGKSDKEIFKKLENDYGETILYTPKFDLQTAALWLSP--VLVAGA 76

Query: 69  AAGVWAYNKHKQKSNIHIMALNLVRGVPLIPKENQTMLDLLA 108
           AAGVWAY+K+KQKSN+HIMALN+VRGVPL P+E QTMLDLL+
Sbjct: 77  AAGVWAYSKYKQKSNVHIMALNIVRGVPLTPREKQTMLDLLS 116

BLAST of Sed0020064 vs. ExPASy Swiss-Prot
Match: B8AFK5 (Cytochrome c-type biogenesis CcmH-like mitochondrial protein OS=Oryza sativa subsp. indica OX=39946 GN=CCMH PE=3 SV=1)

HSP 1 Score: 136.0 bits (341), Expect = 2.6e-31
Identity = 65/98 (66.33%), Postives = 85/98 (86.73%), Query Frame = 0

Query: 11  VISLQLIRDEIRSGKTD--IHKKLENEHGESLLYTPKFDLQTAALWLSQDYVLVAGAAAG 70
           ++  +LIRDEI+SGK+D  I+KKL+ ++GE++LYTPKFDLQTAA+WLS   V+V G AAG
Sbjct: 43  ILLRKLIRDEIKSGKSDKEIYKKLQADYGETILYTPKFDLQTAAIWLSP--VIVGGVAAG 102

Query: 71  VWAYNKHKQKSNIHIMALNLVRGVPLIPKENQTMLDLL 107
           VWAY KH+Q++N+HIMALNLVRGVPL P+E +TMLD+L
Sbjct: 103 VWAYKKHRQRTNVHIMALNLVRGVPLTPREKETMLDVL 138

BLAST of Sed0020064 vs. ExPASy Swiss-Prot
Match: Q6K7S7 (Cytochrome c-type biogenesis CcmH-like mitochondrial protein OS=Oryza sativa subsp. japonica OX=39947 GN=CCMH PE=2 SV=1)

HSP 1 Score: 136.0 bits (341), Expect = 2.6e-31
Identity = 65/98 (66.33%), Postives = 85/98 (86.73%), Query Frame = 0

Query: 11  VISLQLIRDEIRSGKTD--IHKKLENEHGESLLYTPKFDLQTAALWLSQDYVLVAGAAAG 70
           ++  +LIRDEI+SGK+D  I+KKL+ ++GE++LYTPKFDLQTAA+WLS   V+V G AAG
Sbjct: 43  ILLRKLIRDEIKSGKSDKEIYKKLQADYGETILYTPKFDLQTAAIWLSP--VIVGGVAAG 102

Query: 71  VWAYNKHKQKSNIHIMALNLVRGVPLIPKENQTMLDLL 107
           VWAY KH+Q++N+HIMALNLVRGVPL P+E +TMLD+L
Sbjct: 103 VWAYQKHRQRTNVHIMALNLVRGVPLTPREKETMLDVL 138

BLAST of Sed0020064 vs. ExPASy Swiss-Prot
Match: Q9XI46 (Cytochrome c-type biogenesis CcmH-like mitochondrial protein OS=Arabidopsis thaliana OX=3702 GN=CCMH PE=1 SV=1)

HSP 1 Score: 110.9 bits (276), Expect = 8.9e-24
Identity = 57/98 (58.16%), Postives = 74/98 (75.51%), Query Frame = 0

Query: 11  VISLQLIRDEIRSGKTD--IHKKLENEHGESLLYTPKFDLQTAALWLSQDYVLVAGAAAG 70
           ++  QLIR+EI +GKTD  I+ KLE+E GE++LY PKFDLQTAALWL+   V++AG  A 
Sbjct: 44  ILLRQLIRNEIGAGKTDKEIYSKLEDEFGETVLYAPKFDLQTAALWLTP--VIIAGGTAA 103

Query: 71  VWAYNKHKQKSNIHIMALNLVRGVPLIPKENQTMLDLL 107
              Y KH+ + N+ IMALNL+RGVPL PKE  T+LD+L
Sbjct: 104 GIVYQKHRLRKNVDIMALNLIRGVPLTPKERVTILDVL 139

BLAST of Sed0020064 vs. ExPASy TrEMBL
Match: A0A1S4DZT6 (Cytochrome c-type biogenesis protein OS=Cucumis melo OX=3656 GN=LOC103493367 PE=3 SV=1)

HSP 1 Score: 151.0 bits (380), Expect = 2.9e-33
Identity = 76/99 (76.77%), Postives = 88/99 (88.89%), Query Frame = 0

Query: 11  VISLQLIRDEIRSGKTD--IHKKLENEHGESLLYTPKFDLQTAALWLSQDYVLVAGAAAG 70
           ++  +LIRDEIRSGKTD  I+KKLEN++GE++LYTPKFDLQTA LWLS   VLVAGAA G
Sbjct: 44  ILLRKLIRDEIRSGKTDKEIYKKLENDYGETILYTPKFDLQTAGLWLSP--VLVAGAAVG 103

Query: 71  VWAYNKHKQKSNIHIMALNLVRGVPLIPKENQTMLDLLA 108
           VWAY+KHKQ+SN+HIMALNLVRGVPL PKE QTMLDLL+
Sbjct: 104 VWAYSKHKQRSNVHIMALNLVRGVPLTPKEKQTMLDLLS 140

BLAST of Sed0020064 vs. ExPASy TrEMBL
Match: A0A5A7TY95 (Cytochrome c-type biogenesis protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold298G00810 PE=3 SV=1)

HSP 1 Score: 151.0 bits (380), Expect = 2.9e-33
Identity = 76/99 (76.77%), Postives = 88/99 (88.89%), Query Frame = 0

Query: 11  VISLQLIRDEIRSGKTD--IHKKLENEHGESLLYTPKFDLQTAALWLSQDYVLVAGAAAG 70
           ++  +LIRDEIRSGKTD  I+KKLEN++GE++LYTPKFDLQTA LWLS   VLVAGAA G
Sbjct: 44  ILLRKLIRDEIRSGKTDKEIYKKLENDYGETILYTPKFDLQTAGLWLSP--VLVAGAAVG 103

Query: 71  VWAYNKHKQKSNIHIMALNLVRGVPLIPKENQTMLDLLA 108
           VWAY+KHKQ+SN+HIMALNLVRGVPL PKE QTMLDLL+
Sbjct: 104 VWAYSKHKQRSNVHIMALNLVRGVPLTPKEKQTMLDLLS 140

BLAST of Sed0020064 vs. ExPASy TrEMBL
Match: A0A6J1DHL6 (Cytochrome c-type biogenesis protein OS=Momordica charantia OX=3673 GN=LOC111020546 PE=3 SV=1)

HSP 1 Score: 150.6 bits (379), Expect = 3.7e-33
Identity = 76/98 (77.55%), Postives = 89/98 (90.82%), Query Frame = 0

Query: 11  VISLQLIRDEIRSGKTD--IHKKLENEHGESLLYTPKFDLQTAALWLSQDYVLVAGAAAG 70
           ++  +LIRDEIRSGK+D  I++KLE+++GE++LYTPKFDLQTAALWLS   VLVAGAAAG
Sbjct: 44  ILLRKLIRDEIRSGKSDKEIYRKLEDDYGETVLYTPKFDLQTAALWLSP--VLVAGAAAG 103

Query: 71  VWAYNKHKQKSNIHIMALNLVRGVPLIPKENQTMLDLL 107
           VWAYNKHKQK+N+HIMALNLVRGVPL PKE QTMLDLL
Sbjct: 104 VWAYNKHKQKTNVHIMALNLVRGVPLTPKEKQTMLDLL 139

BLAST of Sed0020064 vs. ExPASy TrEMBL
Match: A0A0A0L351 (Cytochrome c-type biogenesis protein OS=Cucumis sativus OX=3659 GN=Csa_3G099640 PE=3 SV=1)

HSP 1 Score: 148.7 bits (374), Expect = 1.4e-32
Identity = 74/99 (74.75%), Postives = 88/99 (88.89%), Query Frame = 0

Query: 11  VISLQLIRDEIRSGKT--DIHKKLENEHGESLLYTPKFDLQTAALWLSQDYVLVAGAAAG 70
           ++  +LIRDEIRSGK+  DI+KKLEN++GE++LYTPKFDLQTA LWLS   V+VAGAA G
Sbjct: 44  ILLRKLIRDEIRSGKSDKDIYKKLENDYGETILYTPKFDLQTAGLWLSP--VIVAGAAVG 103

Query: 71  VWAYNKHKQKSNIHIMALNLVRGVPLIPKENQTMLDLLA 108
           VWAY+KHKQ+SN+HIMALNLVRGVPL PKE QTMLDLL+
Sbjct: 104 VWAYSKHKQRSNVHIMALNLVRGVPLTPKEKQTMLDLLS 140

BLAST of Sed0020064 vs. ExPASy TrEMBL
Match: A0A6J1JTI4 (Cytochrome c-type biogenesis protein OS=Cucurbita maxima OX=3661 GN=LOC111488733 PE=3 SV=1)

HSP 1 Score: 148.3 bits (373), Expect = 1.8e-32
Identity = 75/99 (75.76%), Postives = 89/99 (89.90%), Query Frame = 0

Query: 11  VISLQLIRDEIRSGKTD--IHKKLENEHGESLLYTPKFDLQTAALWLSQDYVLVAGAAAG 70
           ++  +LIRDEIRSGK+D  I KKLEN++GE++LYTPKFDLQTAALWLS   VLVAGAAAG
Sbjct: 44  ILLRKLIRDEIRSGKSDKEIFKKLENDYGETILYTPKFDLQTAALWLSP--VLVAGAAAG 103

Query: 71  VWAYNKHKQKSNIHIMALNLVRGVPLIPKENQTMLDLLA 108
           VWAY+K+KQKSN+HIMALN+VRGVPL P+E QTMLDLL+
Sbjct: 104 VWAYSKYKQKSNVHIMALNIVRGVPLTPREKQTMLDLLS 140

BLAST of Sed0020064 vs. TAIR 10
Match: AT1G15220.1 (cytochrome c biogenesis protein family )

HSP 1 Score: 110.9 bits (276), Expect = 6.3e-25
Identity = 57/98 (58.16%), Postives = 74/98 (75.51%), Query Frame = 0

Query: 11  VISLQLIRDEIRSGKTD--IHKKLENEHGESLLYTPKFDLQTAALWLSQDYVLVAGAAAG 70
           ++  QLIR+EI +GKTD  I+ KLE+E GE++LY PKFDLQTAALWL+   V++AG  A 
Sbjct: 44  ILLRQLIRNEIGAGKTDKEIYSKLEDEFGETVLYAPKFDLQTAALWLTP--VIIAGGTAA 103

Query: 71  VWAYNKHKQKSNIHIMALNLVRGVPLIPKENQTMLDLL 107
              Y KH+ + N+ IMALNL+RGVPL PKE  T+LD+L
Sbjct: 104 GIVYQKHRLRKNVDIMALNLIRGVPLTPKERVTILDVL 139

BLAST of Sed0020064 vs. TAIR 10
Match: AT1G15220.2 (cytochrome c biogenesis protein family )

HSP 1 Score: 110.9 bits (276), Expect = 6.3e-25
Identity = 57/98 (58.16%), Postives = 74/98 (75.51%), Query Frame = 0

Query: 11  VISLQLIRDEIRSGKTD--IHKKLENEHGESLLYTPKFDLQTAALWLSQDYVLVAGAAAG 70
           ++  QLIR+EI +GKTD  I+ KLE+E GE++LY PKFDLQTAALWL+   V++AG  A 
Sbjct: 44  ILLRQLIRNEIGAGKTDKEIYSKLEDEFGETVLYAPKFDLQTAALWLTP--VIIAGGTAA 103

Query: 71  VWAYNKHKQKSNIHIMALNLVRGVPLIPKENQTMLDLL 107
              Y KH+ + N+ IMALNL+RGVPL PKE  T+LD+L
Sbjct: 104 GIVYQKHRLRKNVDIMALNLIRGVPLTPKERVTILDVL 139

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_038904619.19.1e-3478.79cytochrome c-type biogenesis CcmH-like mitochondrial protein [Benincasa hispida]... [more]
XP_008452301.15.9e-3376.77PREDICTED: cytochrome c-type biogenesis CcmH-like mitochondrial protein [Cucumis... [more]
XP_022152937.17.7e-3377.55cytochrome c-type biogenesis CcmH-like mitochondrial protein [Momordica charanti... [more]
XP_004149299.12.9e-3274.75cytochrome c-type biogenesis CcmH-like mitochondrial protein [Cucumis sativus] >... [more]
XP_022992426.13.8e-3276.47cytochrome c-type biogenesis CcmH-like mitochondrial protein isoform X2 [Cucurbi... [more]
Match NameE-valueIdentityDescription
B8AFK52.6e-3166.33Cytochrome c-type biogenesis CcmH-like mitochondrial protein OS=Oryza sativa sub... [more]
Q6K7S72.6e-3166.33Cytochrome c-type biogenesis CcmH-like mitochondrial protein OS=Oryza sativa sub... [more]
Q9XI468.9e-2458.16Cytochrome c-type biogenesis CcmH-like mitochondrial protein OS=Arabidopsis thal... [more]
Match NameE-valueIdentityDescription
A0A1S4DZT62.9e-3376.77Cytochrome c-type biogenesis protein OS=Cucumis melo OX=3656 GN=LOC103493367 PE=... [more]
A0A5A7TY952.9e-3376.77Cytochrome c-type biogenesis protein OS=Cucumis melo var. makuwa OX=1194695 GN=E... [more]
A0A6J1DHL63.7e-3377.55Cytochrome c-type biogenesis protein OS=Momordica charantia OX=3673 GN=LOC111020... [more]
A0A0A0L3511.4e-3274.75Cytochrome c-type biogenesis protein OS=Cucumis sativus OX=3659 GN=Csa_3G099640 ... [more]
A0A6J1JTI41.8e-3275.76Cytochrome c-type biogenesis protein OS=Cucurbita maxima OX=3661 GN=LOC111488733... [more]
Match NameE-valueIdentityDescription
AT1G15220.16.3e-2558.16cytochrome c biogenesis protein family [more]
AT1G15220.26.3e-2558.16cytochrome c biogenesis protein family [more]
InterPro
Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR005616CcmH/CycL/Ccl2/NrfF familyPFAMPF03918CcmHcoord: 16..80
e-value: 3.5E-8
score: 32.8
NoneNo IPR availablePANTHERPTHR47601FAMILY NOT NAMEDcoord: 12..106
NoneNo IPR availablePANTHERPTHR47601:SF3CYTOCHROME C-TYPE BIOGENESIS PROTEINcoord: 12..106

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Sed0020064.1Sed0020064.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0009793 embryo development ending in seed dormancy
cellular_component GO:0016021 integral component of membrane
cellular_component GO:0005743 mitochondrial inner membrane
cellular_component GO:0032991 protein-containing complex
molecular_function GO:0046872 metal ion binding
molecular_function GO:0016491 oxidoreductase activity