Sed0020022 (gene) Chayote v1

Overview


Name	Sed0020022
Type	gene
Organism	Sechium edule (Chayote v1)
Description	Prolamin_like domain-containing protein
Location	LG09: 4525248 .. 4525649 (+)
RNA-Seq Expression	Sed0020022
Synteny	Sed0020022

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACAAAGAAAACCAGCACAGTGGTGACATTAATGGGGATTCTCTCATGGACAATAATTTTGGCAACCTTAGCTCCACGCTCGATGGCCGCCGACGATTACAATTCACCTATATGGAATGGATGGGTAGACGAGGATAGAGGATACACCTTACGACCATGTTTGGATATGATAAGGAATGCAAAATGTCAGGTGGAACTTTACAAGTACTACTTCAATATAAGTAAGAAAGAATTGGATCTAAATTGTTGCGTTTTCGTTAAATTCATGGGGAAGAGTTGTGCTGAAGCTTTTACTTTTTGGTTTGACTTTCCAAATTTGGAAGCCTTGAAACCTAATCCCATGATGGCATATACAAATTGTGTTAGAAGACTTGATGCTCCCCCACCTTCGAAATTTTAA

mRNA sequence

ATGACAAAGAAAACCAGCACAGTGGTGACATTAATGGGGATTCTCTCATGGACAATAATTTTGGCAACCTTAGCTCCACGCTCGATGGCCGCCGACGATTACAATTCACCTATATGGAATGGATGGGTAGACGAGGATAGAGGATACACCTTACGACCATGTTTGGATATGATAAGGAATGCAAAATGTCAGGTGGAACTTTACAAGTACTACTTCAATATAAGTAAGAAAGAATTGGATCTAAATTGTTGCGTTTTCGTTAAATTCATGGGGAAGAGTTGTGCTGAAGCTTTTACTTTTTGGTTTGACTTTCCAAATTTGGAAGCCTTGAAACCTAATCCCATGATGGCATATACAAATTGTGTTAGAAGACTTGATGCTCCCCCACCTTCGAAATTTTAA

Coding sequence (CDS)

ATGACAAAGAAAACCAGCACAGTGGTGACATTAATGGGGATTCTCTCATGGACAATAATTTTGGCAACCTTAGCTCCACGCTCGATGGCCGCCGACGATTACAATTCACCTATATGGAATGGATGGGTAGACGAGGATAGAGGATACACCTTACGACCATGTTTGGATATGATAAGGAATGCAAAATGTCAGGTGGAACTTTACAAGTACTACTTCAATATAAGTAAGAAAGAATTGGATCTAAATTGTTGCGTTTTCGTTAAATTCATGGGGAAGAGTTGTGCTGAAGCTTTTACTTTTTGGTTTGACTTTCCAAATTTGGAAGCCTTGAAACCTAATCCCATGATGGCATATACAAATTGTGTTAGAAGACTTGATGCTCCCCCACCTTCGAAATTTTAA

Protein sequence

MTKKTSTVVTLMGILSWTIILATLAPRSMAADDYNSPIWNGWVDEDRGYTLRPCLDMIRNAKCQVELYKYYFNISKKELDLNCCVFVKFMGKSCAEAFTFWFDFPNLEALKPNPMMAYTNCVRRLDAPPPSKF

Homology

[Close]

BLAST of Sed0020022 vs. NCBI nr
Match: KAA0046835.1 (hypothetical protein E6C27_scaffold216G001330 [Cucumis melo var. makuwa] >KAA0046840.1 hypothetical protein E6C27_scaffold216G001400 [Cucumis melo var. makuwa] >KAA0065932.1 hypothetical protein E6C27_scaffold10942G00010 [Cucumis melo var. makuwa] >TYK04499.1 hypothetical protein E5676_scaffold409G001130 [Cucumis melo var. makuwa] >TYK14838.1 hypothetical protein E5676_scaffold6575G00010 [Cucumis melo var. makuwa])

HSP 1 Score: 195.7 bits (496), Expect = 2.6e-46
Identity = 86/120 (71.67%), Postives = 97/120 (80.83%), Query Frame = 0


Query: 14  ILSWTIILATLAPRSMAADDYNSPIWNGWVDEDRGYTLRPCLDMIRNAKCQVELYKYYFN 73
           IL + I L+ L   S   +DYNSPIW+GWVDEDRGYTLRPCLD +R+AKCQVELY YYFN
Sbjct: 6   ILLFAINLSKLVQSSGVDEDYNSPIWDGWVDEDRGYTLRPCLDRMRSAKCQVELYNYYFN 65

Query: 74  ISKKELDLNCCVFVKFMGKSCAEAFTFWFDFPNLEALKPNPMMAYTNCVRRLDAPPPSKF 133
           ISKKELDLNCCVFVK MGK CA+AFTFW+ FP LE  +PNPM  Y NC+ RLDAPPP+ F
Sbjct: 66  ISKKELDLNCCVFVKVMGKKCAQAFTFWYQFPGLEIYEPNPMKVYNNCITRLDAPPPAPF 125

[Close]

BLAST of Sed0020022 vs. NCBI nr
Match: KAA0046841.1 (hypothetical protein E6C27_scaffold216G001410 [Cucumis melo var. makuwa] >TYK04493.1 hypothetical protein E5676_scaffold409G001070 [Cucumis melo var. makuwa])

HSP 1 Score: 181.0 bits (458), Expect = 6.6e-42
Identity = 86/135 (63.70%), Postives = 99/135 (73.33%), Query Frame = 0


Query: 1   MTKKTSTVVTLMGILSWTIILATLAPRSMA--ADDYNSPIWNGWVDEDRGYTLRPCLDMI 60
           M   T+TV  ++ IL   + LA L   SMA   DDYNSPIWNGWVDEDR   LRPCLDM+
Sbjct: 1   MANGTNTVGGILTILLLAVNLAILVHPSMADVDDDYNSPIWNGWVDEDRASNLRPCLDMM 60

Query: 61  RNAKCQVELYKYYFNISKKELDLNCCVFVKFMGKSCAEAFTFWFDFPNLEALKPNPMMAY 120
           ++AKCQV+LY YYFNISKKELDL CCVFVK MGK CA AF  W++FP LE  +PNPM+ Y
Sbjct: 61  KSAKCQVQLYNYYFNISKKELDLQCCVFVKIMGKYCAHAFAGWYEFPGLEVYEPNPMIVY 120

Query: 121 TNCVRRLDAPPPSKF 134
            NCV RL A PP+ F
Sbjct: 121 NNCVGRLQALPPTPF 135

[Close]

BLAST of Sed0020022 vs. NCBI nr
Match: KAG6578867.1 (hypothetical protein SDJN03_23315, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 179.1 bits (453), Expect = 2.5e-41
Identity = 85/122 (69.67%), Postives = 91/122 (74.59%), Query Frame = 0


Query: 12  MGILSWTIILATLAPRSMAADDYNSPIWNGWVDEDRGYTLRPCLDMIRNAKCQVELYKYY 71
           M IL   I LA LA  S A DDYNSPIW+ WVDEDRG  LRPCLDM+++AKCQVELY YY
Sbjct: 4   MVILLLAINLAFLAQPSTADDDYNSPIWDRWVDEDRGINLRPCLDMMKSAKCQVELYNYY 63

Query: 72  FNISKKELDLNCCVFVKFMGKSCAEAFTFWFDFPNLEALKPNPMMAYTNCVRRLDAPPPS 131
           FNISKKELDLNCCVFVK MGK CA AF  WF FP  E  + NPM  Y NCV RLDA PP+
Sbjct: 64  FNISKKELDLNCCVFVKVMGKRCARAFAGWFRFPEFEVFELNPMKVYKNCVGRLDALPPA 123

Query: 132 KF 134
            F
Sbjct: 124 PF 125

[Close]

BLAST of Sed0020022 vs. NCBI nr
Match: KAE8646662.1 (hypothetical protein Csa_004797, partial [Cucumis sativus])

HSP 1 Score: 157.5 bits (397), Expect = 7.8e-35
Identity = 73/112 (65.18%), Postives = 87/112 (77.68%), Query Frame = 0


Query: 4   KTSTVVTLMGILSWTIILATLAPRSMAADDYNSPIWNGWVDEDRGYTLRPCLDMIRNAKC 63
           KT+ +  ++ +LS TI LA L       +DYNS IWN W+DEDR +TLRPCLD +R+AKC
Sbjct: 30  KTNAMRAMLILLS-TINLAKLVQPYGVDEDYNSSIWNDWLDEDRAFTLRPCLDRMRSAKC 89

Query: 64  QVELYKYYFNISKKELDLNCCVFVKFMGKSCAEAFTFWFDFPNLEALKPNPM 116
           QVELY YYFNISK+ELDLNCCVFVK MGK CA+AFTFW+ FP LE  +PNPM
Sbjct: 90  QVELYNYYFNISKEELDLNCCVFVKVMGKKCAQAFTFWYQFPGLEIYEPNPM 140

[Close]

BLAST of Sed0020022 vs. NCBI nr
Match: KGN50979.1 (hypothetical protein Csa_008880 [Cucumis sativus])

HSP 1 Score: 156.4 bits (394), Expect = 1.7e-34
Identity = 74/128 (57.81%), Postives = 92/128 (71.88%), Query Frame = 0


Query: 6   STVVTLMGILSWTIILATLA--PRSMAADDYNSPIWNGWVDEDRGYTLRPCLDMIRNAKC 65
           ST V L+ ++   +++ +LA    S   D+  S IW+ W+DEDR  TL PCL M+R+ KC
Sbjct: 4   STRVLLVVVMLSLLVVDSLALVQPSTVDDNGISSIWSDWLDEDRAPTLAPCLHMMRSEKC 63

Query: 66  QVELYKYYFNISKKELDLNCCVFVKFMGKSCAEAFTFWFDFPNLEALKPNPMMAYTNCVR 125
           QVELY YYFNISKKELDL+CCV+V +MGK CA AF FWF FP+LEALKPNPM  Y NC +
Sbjct: 64  QVELYNYYFNISKKELDLSCCVYVNYMGKKCAAAFEFWFSFPSLEALKPNPMKVYNNCFK 123

Query: 126 RLDAPPPS 132
           RL  P P+
Sbjct: 124 RLTFPAPT 131

[Close]

BLAST of Sed0020022 vs. ExPASy TrEMBL
Match: A0A5D3C280 (Prolamin_like domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold409G001130 PE=4 SV=1)

HSP 1 Score: 195.7 bits (496), Expect = 1.3e-46
Identity = 86/120 (71.67%), Postives = 97/120 (80.83%), Query Frame = 0


Query: 14  ILSWTIILATLAPRSMAADDYNSPIWNGWVDEDRGYTLRPCLDMIRNAKCQVELYKYYFN 73
           IL + I L+ L   S   +DYNSPIW+GWVDEDRGYTLRPCLD +R+AKCQVELY YYFN
Sbjct: 6   ILLFAINLSKLVQSSGVDEDYNSPIWDGWVDEDRGYTLRPCLDRMRSAKCQVELYNYYFN 65

Query: 74  ISKKELDLNCCVFVKFMGKSCAEAFTFWFDFPNLEALKPNPMMAYTNCVRRLDAPPPSKF 133
           ISKKELDLNCCVFVK MGK CA+AFTFW+ FP LE  +PNPM  Y NC+ RLDAPPP+ F
Sbjct: 66  ISKKELDLNCCVFVKVMGKKCAQAFTFWYQFPGLEIYEPNPMKVYNNCITRLDAPPPAPF 125

[Close]

BLAST of Sed0020022 vs. ExPASy TrEMBL
Match: A0A0A0KEB8 (Prolamin_like domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G054340 PE=4 SV=1)

HSP 1 Score: 182.2 bits (461), Expect = 1.4e-42
Identity = 84/131 (64.12%), Postives = 98/131 (74.81%), Query Frame = 0


Query: 1   MTKKTSTVVTLMGILSWTIILATLAPRSMAADDYNSPIWNGWVDEDRGYTLRPCLDMIRN 60
           M  KT+ +  ++ +LS  I LA L   S   +DYNS IWN W+DEDR +TLRPCLD +R+
Sbjct: 1   MANKTNAMRAMVILLS-AINLAKLVQSSGVDEDYNSSIWNDWLDEDRAFTLRPCLDRMRS 60

Query: 61  AKCQVELYKYYFNISKKELDLNCCVFVKFMGKSCAEAFTFWFDFPNLEALKPNPMMAYTN 120
           AKCQVELY YYFNISKKELDLNCCVFVK MGK CA+AFTFW+ FP LE  +PNPM  Y N
Sbjct: 61  AKCQVELYNYYFNISKKELDLNCCVFVKVMGKKCAQAFTFWYQFPGLEIYEPNPMKVYNN 120

Query: 121 CVRRLDAPPPS 132
           C  RL APPP+
Sbjct: 121 CATRLSAPPPT 130

[Close]

BLAST of Sed0020022 vs. ExPASy TrEMBL
Match: A0A5A7TZR1 (Prolamin_like domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold409G001070 PE=4 SV=1)

HSP 1 Score: 181.0 bits (458), Expect = 3.2e-42
Identity = 86/135 (63.70%), Postives = 99/135 (73.33%), Query Frame = 0


Query: 1   MTKKTSTVVTLMGILSWTIILATLAPRSMA--ADDYNSPIWNGWVDEDRGYTLRPCLDMI 60
           M   T+TV  ++ IL   + LA L   SMA   DDYNSPIWNGWVDEDR   LRPCLDM+
Sbjct: 1   MANGTNTVGGILTILLLAVNLAILVHPSMADVDDDYNSPIWNGWVDEDRASNLRPCLDMM 60

Query: 61  RNAKCQVELYKYYFNISKKELDLNCCVFVKFMGKSCAEAFTFWFDFPNLEALKPNPMMAY 120
           ++AKCQV+LY YYFNISKKELDL CCVFVK MGK CA AF  W++FP LE  +PNPM+ Y
Sbjct: 61  KSAKCQVQLYNYYFNISKKELDLQCCVFVKIMGKYCAHAFAGWYEFPGLEVYEPNPMIVY 120

Query: 121 TNCVRRLDAPPPSKF 134
            NCV RL A PP+ F
Sbjct: 121 NNCVGRLQALPPTPF 135

[Close]

BLAST of Sed0020022 vs. ExPASy TrEMBL
Match: A0A0A0KQ41 (Prolamin_like domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_5G381840 PE=4 SV=1)

HSP 1 Score: 156.4 bits (394), Expect = 8.4e-35
Identity = 74/128 (57.81%), Postives = 92/128 (71.88%), Query Frame = 0


Query: 6   STVVTLMGILSWTIILATLA--PRSMAADDYNSPIWNGWVDEDRGYTLRPCLDMIRNAKC 65
           ST V L+ ++   +++ +LA    S   D+  S IW+ W+DEDR  TL PCL M+R+ KC
Sbjct: 4   STRVLLVVVMLSLLVVDSLALVQPSTVDDNGISSIWSDWLDEDRAPTLAPCLHMMRSEKC 63

Query: 66  QVELYKYYFNISKKELDLNCCVFVKFMGKSCAEAFTFWFDFPNLEALKPNPMMAYTNCVR 125
           QVELY YYFNISKKELDL+CCV+V +MGK CA AF FWF FP+LEALKPNPM  Y NC +
Sbjct: 64  QVELYNYYFNISKKELDLSCCVYVNYMGKKCAAAFEFWFSFPSLEALKPNPMKVYNNCFK 123

Query: 126 RLDAPPPS 132
           RL  P P+
Sbjct: 124 RLTFPAPT 131

[Close]

BLAST of Sed0020022 vs. ExPASy TrEMBL
Match: A0A0A0L535 (Prolamin_like domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G008300 PE=4 SV=1)

HSP 1 Score: 127.9 bits (320), Expect = 3.2e-26
Identity = 61/131 (46.56%), Postives = 87/131 (66.41%), Query Frame = 0


Query: 2   TKKTSTVVTLMGILSWTII--LATLAPRSMAADDYNSPIWNGWVDEDRGYTLRPCLDMIR 61
           T  ++  + L+ +LS  ++  LA + P S+  D+  S IW+GW+D+DR   L  CL +++
Sbjct: 4   TSNSTGALLLVVMLSLLVVDSLALVHP-SIIDDNGISSIWSGWIDKDRAPILASCLYLMK 63

Query: 62  NAKCQVELYKYYFNISKKELDLNCCVFVKFMGKSCAEAFTFWFDFPNLEALKPNPMMAYT 121
           + KCQVELY YYFN SKKE+DL+CCV+V ++G+ CA +F  WF     +ALKPNPM  Y 
Sbjct: 64  SDKCQVELYNYYFNKSKKEVDLSCCVYVNYIGEECAASFESWFSSLGFKALKPNPMKLYN 123

Query: 122 NCVRRLDAPPP 131
           NC +RL  P P
Sbjct: 124 NCFKRLTVPAP 133

The following BLAST results are available for this feature:

BLAST of Sed0020022 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0046835.1	2.6e-46	71.67	hypothetical protein E6C27_scaffold216G001330 [Cucumis melo var. makuwa] >KAA004...	[more]
KAA0046841.1	6.6e-42	63.70	hypothetical protein E6C27_scaffold216G001410 [Cucumis melo var. makuwa] >TYK044...	[more]
KAG6578867.1	2.5e-41	69.67	hypothetical protein SDJN03_23315, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAE8646662.1	7.8e-35	65.18	hypothetical protein Csa_004797, partial [Cucumis sativus]	[more]
KGN50979.1	1.7e-34	57.81	hypothetical protein Csa_008880 [Cucumis sativus]	[more]

BLAST of Sed0020022 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Sed0020022 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3C280	1.3e-46	71.67	Prolamin_like domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 G...	[more]
A0A0A0KEB8	1.4e-42	64.12	Prolamin_like domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G0543...	[more]
A0A5A7TZR1	3.2e-42	63.70	Prolamin_like domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 G...	[more]
A0A0A0KQ41	8.4e-35	57.81	Prolamin_like domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_5G3818...	[more]
A0A0A0L535	3.2e-26	46.56	Prolamin_like domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G0083...	[more]

BLAST of Sed0020022 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR008502	Prolamin-like domain	PFAM	PF05617	Prolamin_like	coord: 54..105 e-value: 8.6E-5 score: 22.6

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0020022.1	Sed0020022.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0110165	cellular anatomical entity