Sed0019985 (gene) Chayote v1
Overview
Sequences
The following sequences are available for this feature:
Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.AAAGAAACATTTTTTTGGACAATACCCTTATATTGCTTACACTTTTAAACCATTTCCCATTCCTTTCTTCTTCAACTTCTTTCAATTTTCTTTCTTCTTTTTTGGGCATGAACATGGGAGGCAAAGAAAAGATTGAAGCGTTTGAAGCTATAGAGTTGAGGGAACTTAGTTGGGTAATCATGGAAACAAGAGGAAATAAAGTTTATGAAACTTCTACTTTGACCATTGATTCTTCTCCAGAAAATTCGATCAACTCAAGTGAATCTTCATCGTCGGAATTTGTAGAAGATGCATCATCTACTTCAACCTCGAACCTTTCATTATCGTCGTTTTCACCATCATCGTCGAGTGGACCTCTCTATGAACTTTCAGAGCTCATGGCCAATCTCCCAATCAAGTAAGAAGATATGAAAAACCCTAGAGAAATAGTTAGCAAAAACTTTTTTTTTTATCAAACAATAACCCCTTTTGATTTTCTTTGGATTTTTTAGGAGAGGGCTATCAAAATTCTACAATGGAAAATCACAATCCTTTACATCTCTAGCAAGTGCAAAGAGCTTGGAAGATCTAGCAAAGAGAGTGAATAGTATTTCTCAAAGAAAAAAGATGAAGACTTGTAAGAGCTATGGAGGTGGCTTAGATGCTCAAAGATCTTACTCTCCAAAGGCTTTGATTGCCAAAAAGGCTTCCAAGAGAAATAGTAGGGTGGGTTTATTTGATAGCCATTGATGTTTTCAACCAATCATTGGAGGGATGCTAATTTAACTCTTTAATCTCTTTTTTTTTTCCTCTTGTTTATTGTGTATGATTTAGAGATAAAGAGTTGAGGTTGGTTGCTTTTTGAGAAAATGTTTTTTGTAATGCTACAATGACTAAATTATATTTATTTCAAAAGTTTTATTGGA AAAGAAACATTTTTTTGGACAATACCCTTATATTGCTTACACTTTTAAACCATTTCCCATTCCTTTCTTCTTCAACTTCTTTCAATTTTCTTTCTTCTTTTTTGGGCATGAACATGGGAGGCAAAGAAAAGATTGAAGCGTTTGAAGCTATAGAGTTGAGGGAACTTAGTTGGGTAATCATGGAAACAAGAGGAAATAAAGTTTATGAAACTTCTACTTTGACCATTGATTCTTCTCCAGAAAATTCGATCAACTCAAGTGAATCTTCATCGTCGGAATTTGTAGAAGATGCATCATCTACTTCAACCTCGAACCTTTCATTATCGTCGTTTTCACCATCATCGTCGAGTGGACCTCTCTATGAACTTTCAGAGCTCATGGCCAATCTCCCAATCAAGAGAGGGCTATCAAAATTCTACAATGGAAAATCACAATCCTTTACATCTCTAGCAAGTGCAAAGAGCTTGGAAGATCTAGCAAAGAGAGTGAATAGTATTTCTCAAAGAAAAAAGATGAAGACTTGTAAGAGCTATGGAGGTGGCTTAGATGCTCAAAGATCTTACTCTCCAAAGGCTTTGATTGCCAAAAAGGCTTCCAAGAGAAATAGTAGGGTGGGTTTATTTGATAGCCATTGATGTTTTCAACCAATCATTGGAGGGATGCTAATTTAACTCTTTAATCTCTTTTTTTTTTCCTCTTGTTTATTGTGTATGATTTAGAGATAAAGAGTTGAGGTTGGTTGCTTTTTGAGAAAATGTTTTTTGTAATGCTACAATGACTAAATTATATTTATTTCAAAAGTTTTATTGGA ATGAACATGGGAGGCAAAGAAAAGATTGAAGCGTTTGAAGCTATAGAGTTGAGGGAACTTAGTTGGGTAATCATGGAAACAAGAGGAAATAAAGTTTATGAAACTTCTACTTTGACCATTGATTCTTCTCCAGAAAATTCGATCAACTCAAGTGAATCTTCATCGTCGGAATTTGTAGAAGATGCATCATCTACTTCAACCTCGAACCTTTCATTATCGTCGTTTTCACCATCATCGTCGAGTGGACCTCTCTATGAACTTTCAGAGCTCATGGCCAATCTCCCAATCAAGAGAGGGCTATCAAAATTCTACAATGGAAAATCACAATCCTTTACATCTCTAGCAAGTGCAAAGAGCTTGGAAGATCTAGCAAAGAGAGTGAATAGTATTTCTCAAAGAAAAAAGATGAAGACTTGTAAGAGCTATGGAGGTGGCTTAGATGCTCAAAGATCTTACTCTCCAAAGGCTTTGATTGCCAAAAAGGCTTCCAAGAGAAATAGTAGGGTGGGTTTATTTGATAGCCATTGA MNMGGKEKIEAFEAIELRELSWVIMETRGNKVYETSTLTIDSSPENSINSSESSSSEFVEDASSTSTSNLSLSSFSPSSSSGPLYELSELMANLPIKRGLSKFYNGKSQSFTSLASAKSLEDLAKRVNSISQRKKMKTCKSYGGGLDAQRSYSPKALIAKKASKRNSRVGLFDSH Homology
BLAST of Sed0019985 vs. NCBI nr
Match: XP_022154740.1 (uncharacterized protein LOC111021921 [Momordica charantia]) HSP 1 Score: 235.7 bits (600), Expect = 3.0e-58 Identity = 144/183 (78.69%), Postives = 157/183 (85.79%), Query Frame = 0
BLAST of Sed0019985 vs. NCBI nr
Match: XP_022965955.1 (uncharacterized protein LOC111465679 [Cucurbita maxima]) HSP 1 Score: 216.5 bits (550), Expect = 1.9e-52 Identity = 136/181 (75.14%), Postives = 150/181 (82.87%), Query Frame = 0
BLAST of Sed0019985 vs. NCBI nr
Match: XP_038890684.1 (uncharacterized protein LOC120080185 [Benincasa hispida]) HSP 1 Score: 215.7 bits (548), Expect = 3.2e-52 Identity = 134/184 (72.83%), Postives = 150/184 (81.52%), Query Frame = 0
BLAST of Sed0019985 vs. NCBI nr
Match: KAG6586456.1 (hypothetical protein SDJN03_19189, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 215.7 bits (548), Expect = 3.2e-52 Identity = 136/182 (74.73%), Postives = 150/182 (82.42%), Query Frame = 0
BLAST of Sed0019985 vs. NCBI nr
Match: XP_022937494.1 (uncharacterized protein LOC111443888 isoform X1 [Cucurbita moschata] >XP_022937495.1 uncharacterized protein LOC111443888 isoform X1 [Cucurbita moschata]) HSP 1 Score: 214.5 bits (545), Expect = 7.1e-52 Identity = 136/182 (74.73%), Postives = 148/182 (81.32%), Query Frame = 0
BLAST of Sed0019985 vs. ExPASy TrEMBL
Match: A0A6J1DKH4 (uncharacterized protein LOC111021921 OS=Momordica charantia OX=3673 GN=LOC111021921 PE=4 SV=1) HSP 1 Score: 235.7 bits (600), Expect = 1.4e-58 Identity = 144/183 (78.69%), Postives = 157/183 (85.79%), Query Frame = 0
BLAST of Sed0019985 vs. ExPASy TrEMBL
Match: A0A6J1HQ75 (uncharacterized protein LOC111465679 OS=Cucurbita maxima OX=3661 GN=LOC111465679 PE=4 SV=1) HSP 1 Score: 216.5 bits (550), Expect = 9.0e-53 Identity = 136/181 (75.14%), Postives = 150/181 (82.87%), Query Frame = 0
BLAST of Sed0019985 vs. ExPASy TrEMBL
Match: A0A6J1FBB9 (uncharacterized protein LOC111443888 isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111443888 PE=4 SV=1) HSP 1 Score: 214.5 bits (545), Expect = 3.4e-52 Identity = 136/182 (74.73%), Postives = 148/182 (81.32%), Query Frame = 0
BLAST of Sed0019985 vs. ExPASy TrEMBL
Match: A0A6J1FAH9 (uncharacterized protein LOC111443888 isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111443888 PE=4 SV=1) HSP 1 Score: 208.0 bits (528), Expect = 3.2e-50 Identity = 133/178 (74.72%), Postives = 143/178 (80.34%), Query Frame = 0
BLAST of Sed0019985 vs. ExPASy TrEMBL
Match: A0A1S3C929 (uncharacterized protein LOC103498213 OS=Cucumis melo OX=3656 GN=LOC103498213 PE=4 SV=1) HSP 1 Score: 184.5 bits (467), Expect = 3.8e-43 Identity = 125/181 (69.06%), Postives = 140/181 (77.35%), Query Frame = 0
BLAST of Sed0019985 vs. TAIR 10
Match: AT5G56550.1 (oxidative stress 3 ) HSP 1 Score: 88.2 bits (217), Expect = 7.1e-18 Identity = 70/157 (44.59%), Postives = 96/157 (61.15%), Query Frame = 0
BLAST of Sed0019985 vs. TAIR 10
Match: AT4G26288.1 (FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: oxidative stress 3 (TAIR:AT5G56550.1); Has 289 Blast hits to 232 proteins in 41 species: Archae - 0; Bacteria - 12; Metazoa - 36; Fungi - 21; Plants - 151; Viruses - 2; Other Eukaryotes - 67 (source: NCBI BLink). ) HSP 1 Score: 66.2 bits (160), Expect = 2.9e-11 Identity = 57/131 (43.51%), Postives = 77/131 (58.78%), Query Frame = 0
BLAST of Sed0019985 vs. TAIR 10
Match: AT5G21940.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G43850.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). ) HSP 1 Score: 44.3 bits (103), Expect = 1.2e-04 Identity = 44/138 (31.88%), Postives = 71/138 (51.45%), Query Frame = 0
BLAST of Sed0019985 vs. TAIR 10
Match: AT4G31510.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G24550.1); Has 205 Blast hits to 205 proteins in 31 species: Archae - 0; Bacteria - 0; Metazoa - 5; Fungi - 3; Plants - 187; Viruses - 0; Other Eukaryotes - 10 (source: NCBI BLink). ) HSP 1 Score: 42.4 bits (98), Expect = 4.5e-04 Identity = 35/93 (37.63%), Postives = 54/93 (58.06%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25
Relationships
The following mRNA feature(s) are a part of this gene:
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