Sed0019961 (gene) Chayote v1

Overview
NameSed0019961
Typegene
OrganismSechium edule (Chayote v1)
DescriptionCACTA en-spm transposon protein
LocationLG07: 15269871 .. 15272373 (+)
RNA-Seq ExpressionSed0019961
SyntenySed0019961
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCATTAGGGTTTTTTAGAGGTTTTAAAAAAACAAGAGAATTTACCATCAGCAGCACATTCTACCTGTTGTATTATATTTGTAGCAGAATTTTTAAAATAATTCATCTAAAACATATTTGTTTCTATCACTCAATTAGTGATATAACTCAATTAGGATTTCTATCACTAATAAAAAACTCAAGTAGTAATAGAATGAGTCTACCATTGATTGAATTCTATCACTAATAAAATTCAATAAATGATAGAAATCAATTTGAATTTTCTATTGCAAATGAATTATTTTATATTTTGTGCTATAAATAAAAATATTTTGCCATTATTATAGATGCAAAATCTCCTTTAAAACGGTATATTAAAATGGAAATAACCCATTTATATAAATATAACATTTAAAATACTCTTCTTTTACAATCCCAAAGCAGCAGCCTCAACCCCTTACCCCTTAATTCTCAGCCATCAAATCAGCCTTGCTCCATTGGTGTCGGATCCCCCATCGCGCTCAGGATCATGCCAGGTGGCGTTTTCTTGTTGTACGAGGAGGCTTCACGCGAATCCCTTTAGCCACATGTGGATCAGCGGTAGCAGTGCGTCCGTCACTACTGTGCGCAACAGTGTTGTCGAAGTGACACGCTTGCTCCACGTCAAGCTGTCGTCTCGTGTTCGTTCGACATTGCTCAGTCGCGTTCGCCTGACAGCTCGTGTCTGACATACCCCATTGCCAAGCTTATTCGTAGCTGCTTTGTCCCGAGTTTCCCAGTGAGCAAGCTCGTCCCATCCAGCAAGCGTGTCATTCGTCTTAGTCTTTTATTTGTTGATCTTTGGTAATCCCTCTTTCTTACTCGAGTTTGGTTGCGAGCTCCAATCACCATTTTTTCCACAATGCAAGCTTCAAAACCCGTTTATTCTCTTGTAGATATAAAAAGTTCGAGAGCACTGTACACGAATACGAGATCAGATCCACAATCAGGGCGTCGAGATGAAGAGAAAGAGGTATGATTAGCATATTCCCGTAGAGACATGCCGCCGCTGGCCGACCACACGCCATTACACTCCAATGACACGTCGTTAGCTTGGTTTCTTGCTCTCGTTCGTGTAGTGAGCTTTGTTTGGACTCGTTCATCCCCATTTGTGCGTTCATTTGACTTCTATATGTAATTTCATGTTTATGCGACCCTTGGGATTTGTCGTTTGATTCGTAGTTTATCTTGGCTAGTTTGGTCGAGTCGTCAGGAAGATAAAGAGTTGTATGAAACCCCTAGTATTCTTCTCAAACTAGAGAGGTGTGTGAAACCCCTAACATCCTTCTCAAGCTAAGAAGCTGTGTGACACACCTAGTATCCTTTTAAAAAGCGAAATTAAATATAGACTAACATTTCTATGTATTCGGTAGTAGCAACCGAGCTTATCGAGGCTACAACACTGGGAAACAATTGGACAAGCGCGTGACCAATCACGGTAAGGTAATTGTGGAGTTTAGTGAGGAATACGTAAAGCTCGTATGCGAGGAGGCCATAACATTGAGTTATCAGATTGGCGTGTTGGTTCGAAAAACATTTCCACTTTGTATTCATGGGTGGAAAAAGGTTCCTAAGGAGACCAAGGATCTCGTAAAGTTGTCGTTGTTGGTTAGTTGATTAACATTTTATTAAACTTAAATTTAATTGTTTTGACATAGTCTTATATGCGTAAATTTTTTAACTTTGTAGACACATTTTATTTTGGATTTAAAAGATCCAGCTGTTGTTAGGACAACAGAGAACACTATGAAAGTAGTGTTCAAAGAGCAAAGACATGAGATGTACAAGCATTATTGGTAAGAATTATTCATAAACATTATCGTTACATTTTTGTTCATTATTATTGATGCTAATATTGTTTCTCCAACAGCATGATGCCCCTAGAGCTTAGACGAGTGACACCGCATAACAGAGTGACTGAGCTCGAAGATTGAGAATATCTAAGCAACTACTGGGAATCACCAAAATGGCTGGAAAAGAGTAGAAAAGCGAAAAATTGTCGTTCGGGGCTCCAATACCATCATCGAACAGGAAATAAGTCGTTCCTGTACCATAGTGAGAAGGTTAGTAATATTTTTGGTTCATTGTGTTATTAAATGATTTAATGCATATTCTTATTCTTGAAGGATTTTGATGAATATTCTTTTTTAACTATAGAAAAGGAAAGAAACTGGTACTCAACTAGACGCAGTGGAACTGTGGCATGATGTTCGAAACCATTCAGTGAAGGGATGGCCAGGTCCTAAAGCCGTTGAGCTTCACGTGAGTATTGCTTATAATATGTTAATCTTTTTTGTATTTCATATGTTAAAAAATAATAAATGTATTTCATGTATTTGTAGGAAAAGATGATAGCCCTGCAAGAAGCACCAACTCCTGAGGGGTCCCAACCTATGACTCAGTCAGAAATTTGTGCAACTGTGTTAGGGCATCGTTCTGACATAGTTAAGGGTATGGGTTATCTCCCTTATGGAAGGAGATAA

mRNA sequence

ATGGCATTAGGTAGCAACCGAGCTTATCGAGGCTACAACACTGGGAAACAATTGGACAAGCGCGTGACCAATCACGGTAAGAAAAGGAAAGAAACTGGTACTCAACTAGACGCAGTGGAACTGTGGCATGATGTTCGAAACCATTCAGTGAAGGGATGGCCAGGTCCTAAAGCCGTTGAGCTTCACGAAAAGATGATAGCCCTGCAAGAAGCACCAACTCCTGAGGGGTCCCAACCTATGACTCAGTCAGAAATTTGTGCAACTGTGTTAGGGCATCGTTCTGACATAGTTAAGGGTATGGGTTATCTCCCTTATGGAAGGAGATAA

Coding sequence (CDS)

ATGGCATTAGGTAGCAACCGAGCTTATCGAGGCTACAACACTGGGAAACAATTGGACAAGCGCGTGACCAATCACGGTAAGAAAAGGAAAGAAACTGGTACTCAACTAGACGCAGTGGAACTGTGGCATGATGTTCGAAACCATTCAGTGAAGGGATGGCCAGGTCCTAAAGCCGTTGAGCTTCACGAAAAGATGATAGCCCTGCAAGAAGCACCAACTCCTGAGGGGTCCCAACCTATGACTCAGTCAGAAATTTGTGCAACTGTGTTAGGGCATCGTTCTGACATAGTTAAGGGTATGGGTTATCTCCCTTATGGAAGGAGATAA

Protein sequence

MALGSNRAYRGYNTGKQLDKRVTNHGKKRKETGTQLDAVELWHDVRNHSVKGWPGPKAVELHEKMIALQEAPTPEGSQPMTQSEICATVLGHRSDIVKGMGYLPYGRR
Homology
BLAST of Sed0019961 vs. NCBI nr
Match: RWR86313.1 (Transposase, Ptta/En/Spm, plant [Cinnamomum micranthum f. kanehirae])

HSP 1 Score: 68.6 bits (166), Expect = 3.9e-08
Identity = 30/67 (44.78%), Postives = 39/67 (58.21%), Query Frame = 0

Query: 36  LDAVELWHDVRNHSVKGWPGPKAVELHEKMIALQEAPTPEGSQPMTQSEICATVLGHRSD 95
           +  +ELWH       KGW  P+   L+EKMI LQ  PT + S P+T  EIC  VLG R  
Sbjct: 212 ISRIELWHKTHYSQDKGWSTPECQMLYEKMITLQSQPTEDDSPPLTDDEICRQVLGTRPG 271

Query: 96  IVKGMGY 103
            V+G+G+
Sbjct: 272 YVRGLGH 278

BLAST of Sed0019961 vs. NCBI nr
Match: KAA8538994.1 (hypothetical protein F0562_025686 [Nyssa sinensis])

HSP 1 Score: 65.9 bits (159), Expect = 2.5e-07
Identity = 29/76 (38.16%), Postives = 45/76 (59.21%), Query Frame = 0

Query: 27  KKRKETGTQLDAVELWHDVRNHSVKGWPGPKAVELHEKMIALQEAPTPEGSQPMTQSEIC 86
           ++  ET  Q   +++W     + VKGW    A E++++MIALQ  PTPEGS P+   +IC
Sbjct: 36  QRDSETQQQPSRIQVWQKTHYNPVKGWSCSLAKEMYDEMIALQSQPTPEGSTPLMDDDIC 95

Query: 87  ATVLGHRSDIVKGMGY 103
             VLG     ++G+G+
Sbjct: 96  DRVLGTGRGYIRGLGH 111

BLAST of Sed0019961 vs. NCBI nr
Match: RVW71840.1 (hypothetical protein CK203_061113 [Vitis vinifera])

HSP 1 Score: 65.5 bits (158), Expect = 3.3e-07
Identity = 37/107 (34.58%), Postives = 56/107 (52.34%), Query Frame = 0

Query: 1   MALGSNRAYRGYNTGKQLD---KRVTNHGKKRKETGTQLDAVELWHDVRNHSVKGWPGPK 60
           +AL     Y+  +  KQ D    R  +   + + TG     +EL+  +   S  GW   +
Sbjct: 77  IALAKQNPYKHVSDQKQWDWLCDRFASEKFQARHTGQAPGQIELFKLMHWTSQNGWINQE 136

Query: 61  AVELHEKMIALQEAPTPEGSQPMTQSEICATVLGHRSDIVKGMGYLP 105
           A   +EKM+ LQ+ P PEG Q + ++EIC  VLG RS  +KG+G+ P
Sbjct: 137 AEASYEKMLELQKQPVPEGGQALKEAEICVQVLGSRSGYIKGLGHGP 183

BLAST of Sed0019961 vs. NCBI nr
Match: RVW69898.1 (hypothetical protein CK203_059139 [Vitis vinifera])

HSP 1 Score: 65.5 bits (158), Expect = 3.3e-07
Identity = 37/107 (34.58%), Postives = 56/107 (52.34%), Query Frame = 0

Query: 1   MALGSNRAYRGYNTGKQLD---KRVTNHGKKRKETGTQLDAVELWHDVRNHSVKGWPGPK 60
           +AL     Y+  +  KQ D    R  +   + + TG  L  +EL+  +   S  GW   +
Sbjct: 77  IALAKQNPYKHVSDQKQWDWLCDRFASEKFQARHTGQALGQIELFKLMHWTSQNGWINQE 136

Query: 61  AVELHEKMIALQEAPTPEGSQPMTQSEICATVLGHRSDIVKGMGYLP 105
           A   + KM+ LQ+ P PEG Q + ++EIC  VLG RS  +KG+G+ P
Sbjct: 137 AEASYGKMLELQKQPVPEGGQALKEAEICVQVLGSRSGYIKGLGHGP 183

BLAST of Sed0019961 vs. NCBI nr
Match: RVW93403.1 (hypothetical protein CK203_035135 [Vitis vinifera])

HSP 1 Score: 65.5 bits (158), Expect = 3.3e-07
Identity = 37/107 (34.58%), Postives = 56/107 (52.34%), Query Frame = 0

Query: 1   MALGSNRAYRGYNTGKQLD---KRVTNHGKKRKETGTQLDAVELWHDVRNHSVKGWPGPK 60
           +AL     Y+  +  KQ D    R  +   + + TG     +EL+  +   S  GW   +
Sbjct: 344 IALAKQNPYKHVSDQKQWDWLCDRFASEKFQARHTGQAPGQIELFKLMHWTSQNGWINQE 403

Query: 61  AVELHEKMIALQEAPTPEGSQPMTQSEICATVLGHRSDIVKGMGYLP 105
           A   +EKM+ LQ+ P PEG Q + ++EIC  VLG RS  +KG+G+ P
Sbjct: 404 AEASYEKMLELQKQPVPEGGQALKEAEICVQVLGSRSGYIKGLGHGP 450

BLAST of Sed0019961 vs. ExPASy TrEMBL
Match: A0A5B6ZAY8 (Uncharacterized protein OS=Davidia involucrata OX=16924 GN=Din_010731 PE=4 SV=1)

HSP 1 Score: 70.9 bits (172), Expect = 3.8e-09
Identity = 32/78 (41.03%), Postives = 44/78 (56.41%), Query Frame = 0

Query: 25  HGKKRKETGTQLDAVELWHDVRNHSVKGWPGPKAVELHEKMIALQEAPTPEGSQPMTQSE 84
           H  + KET    D +++WH       KGW      E + +M+A Q  PTPEGS+P+T  E
Sbjct: 31  HEMRDKETNVPPDRIQVWHQTHYKPDKGWANSFVEEKYNEMLAFQSEPTPEGSKPLTVDE 90

Query: 85  ICATVLGHRSDIVKGMGY 103
           IC  VLG R+  + GMG+
Sbjct: 91  ICNRVLGTRAGYICGMGH 108

BLAST of Sed0019961 vs. ExPASy TrEMBL
Match: A0A5B6ZBJ5 (Uncharacterized protein OS=Davidia involucrata OX=16924 GN=Din_010732 PE=4 SV=1)

HSP 1 Score: 70.9 bits (172), Expect = 3.8e-09
Identity = 32/78 (41.03%), Postives = 44/78 (56.41%), Query Frame = 0

Query: 25  HGKKRKETGTQLDAVELWHDVRNHSVKGWPGPKAVELHEKMIALQEAPTPEGSQPMTQSE 84
           H  + KET    D +++WH       KGW      E + +M+A Q  PTPEGS+P+T  E
Sbjct: 143 HEMRDKETNVPPDRIQVWHQTHYKPDKGWANSFVEEKYNEMLAFQSEPTPEGSKPLTVDE 202

Query: 85  ICATVLGHRSDIVKGMGY 103
           IC  VLG R+  + GMG+
Sbjct: 203 ICNRVLGTRAGYICGMGH 220

BLAST of Sed0019961 vs. ExPASy TrEMBL
Match: A0A5B6ZBC3 (Uncharacterized protein OS=Davidia involucrata OX=16924 GN=Din_010730 PE=4 SV=1)

HSP 1 Score: 70.1 bits (170), Expect = 6.5e-09
Identity = 31/73 (42.47%), Postives = 42/73 (57.53%), Query Frame = 0

Query: 30  KETGTQLDAVELWHDVRNHSVKGWPGPKAVELHEKMIALQEAPTPEGSQPMTQSEICATV 89
           KET    D +++WH       KGW      E + +M+A Q  PTPEGS+P+T  EIC  V
Sbjct: 4   KETNVPPDRIQVWHQTHYKPDKGWANSFVEEKYNEMLAFQSEPTPEGSKPLTVDEICNRV 63

Query: 90  LGHRSDIVKGMGY 103
           LG R+  + GMG+
Sbjct: 64  LGTRAGYICGMGH 76

BLAST of Sed0019961 vs. ExPASy TrEMBL
Match: A0A443P6A9 (Transposase, Ptta/En/Spm, plant OS=Cinnamomum micranthum f. kanehirae OX=337451 GN=CKAN_01520500 PE=4 SV=1)

HSP 1 Score: 68.6 bits (166), Expect = 1.9e-08
Identity = 30/67 (44.78%), Postives = 39/67 (58.21%), Query Frame = 0

Query: 36  LDAVELWHDVRNHSVKGWPGPKAVELHEKMIALQEAPTPEGSQPMTQSEICATVLGHRSD 95
           +  +ELWH       KGW  P+   L+EKMI LQ  PT + S P+T  EIC  VLG R  
Sbjct: 212 ISRIELWHKTHYSQDKGWSTPECQMLYEKMITLQSQPTEDDSPPLTDDEICRQVLGTRPG 271

Query: 96  IVKGMGY 103
            V+G+G+
Sbjct: 272 YVRGLGH 278

BLAST of Sed0019961 vs. ExPASy TrEMBL
Match: A0A5J5B8Q0 (Uncharacterized protein OS=Nyssa sinensis OX=561372 GN=F0562_025686 PE=4 SV=1)

HSP 1 Score: 65.9 bits (159), Expect = 1.2e-07
Identity = 29/76 (38.16%), Postives = 45/76 (59.21%), Query Frame = 0

Query: 27  KKRKETGTQLDAVELWHDVRNHSVKGWPGPKAVELHEKMIALQEAPTPEGSQPMTQSEIC 86
           ++  ET  Q   +++W     + VKGW    A E++++MIALQ  PTPEGS P+   +IC
Sbjct: 36  QRDSETQQQPSRIQVWQKTHYNPVKGWSCSLAKEMYDEMIALQSQPTPEGSTPLMDDDIC 95

Query: 87  ATVLGHRSDIVKGMGY 103
             VLG     ++G+G+
Sbjct: 96  DRVLGTGRGYIRGLGH 111

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
RWR86313.13.9e-0844.78Transposase, Ptta/En/Spm, plant [Cinnamomum micranthum f. kanehirae][more]
KAA8538994.12.5e-0738.16hypothetical protein F0562_025686 [Nyssa sinensis][more]
RVW71840.13.3e-0734.58hypothetical protein CK203_061113 [Vitis vinifera][more]
RVW69898.13.3e-0734.58hypothetical protein CK203_059139 [Vitis vinifera][more]
RVW93403.13.3e-0734.58hypothetical protein CK203_035135 [Vitis vinifera][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5B6ZAY83.8e-0941.03Uncharacterized protein OS=Davidia involucrata OX=16924 GN=Din_010731 PE=4 SV=1[more]
A0A5B6ZBJ53.8e-0941.03Uncharacterized protein OS=Davidia involucrata OX=16924 GN=Din_010732 PE=4 SV=1[more]
A0A5B6ZBC36.5e-0942.47Uncharacterized protein OS=Davidia involucrata OX=16924 GN=Din_010730 PE=4 SV=1[more]
A0A443P6A91.9e-0844.78Transposase, Ptta/En/Spm, plant OS=Cinnamomum micranthum f. kanehirae OX=337451 ... [more]
A0A5J5B8Q01.2e-0738.16Uncharacterized protein OS=Nyssa sinensis OX=561372 GN=F0562_025686 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..35
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 20..35

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Sed0019961.1Sed0019961.1mRNA