Sed0019903 (gene) Chayote v1

Overview


Name	Sed0019903
Type	gene
Organism	Sechium edule (Chayote v1)
Description	Pentatricopeptide repeat-containing protein
Location	LG01: 13633996 .. 13642061 (-)
RNA-Seq Expression	Sed0019903
Synteny	Sed0019903

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CAGCTCTCATCTTCTCCGATTGTTCTTCGCTGCTGCAACTTCGCCGGAGAAATCAGTTCTCAAATTCCCACTGGTTTTCATCTCAATCTGTTCTTCATCTCGAACGAAATCGATAACTATTGGGAAATTCCATTTCGATAATCTTCATGTTCTTAGCTGCTGAAACGATTACTCGTTTCCTCTAATGGCGCTCTCACCGTACTTGTCCGTGCCAAATCCTTTTCAACCGCCGACGACGTTTCAGAAACGGTATTTAGAGCCTCACAATCTTCCACTTCTCATTAAACCCTCCAATTTCACTCTTCGCCGTCGATTTCTCTCCGATGACCGGCGCCTGTTTTCCGACGCCGGGAAGTGCAGAGCGAAGCCGAAGGATCTCGTTCTCGGAAATCCATCGGTGATTGTCGAGAAGGGAAAGTACAGCTACGATGTCGAAACCCTAATAAACAAGCTTAGCAGCCTCCCGCCGCGAGGTAGCATAGCTCGTTGTCTCGATATCTTTAAGAACAGGCTTTCGCTCAATGATTTCAGCTTGGTTTTCAAGGAATTTGCGGCCCGTGGGGACTGGCAACGCTCGTTGCGCCTCTTCAAGTATATGCAGCGGCAGATATGGTGTAAGCCGAACGAGCATATCTATACCATCATGATTAGTTTGCTTGGTCGCGAAGGATTGCTGGAGAAATGCAGCGAGGTGTTTGACGAAATGTCGAGCCAGGGCGTGGTACGTAGCGTGTTTTCTTATACTGCTTTGATTAATGCCTATGGACGCAATGGTCGGTATGAAACTTCGCTTGAACTTCTTGAGAGGATGAAGAGAGACCGAGTGTCGCCTAATATATTGACTTACAATACTGTGATAAATGCTTGTGCTAGAGGTGATTTAGATTGGGAGGGATTGTTGGGGTTGTTTGCTGAAATGAGGCATGAAGGGGTTCAGCCTGATTTGGTTACTTATAATACTTTGCTTAGTGCTTGCGCCGCTCGAGGTTTAGGCGACGAGGCAGAGATGGTCTTTAAGACTATGATAGAGGGAGGGATAGTCCCGGAGATAACAACATACAGTTCTGTTGTTGAAACATTTGGAAAATTGGGTAAGCTTGAGAAAGTTGCTATACTGCTAAAAGAAATGGAATCCGAAGGGTATTTGCCTGATATATCATCCTACAATGTGTTAATAGAGGCACATGCGAAATCAGGATCGATTAAGGAGGCAATGGATGTGTTTAAGCAGATGCAAGCAGCAGGGTGTGTGCCAAATGCATCCACTTACAGTATTCTGTTGAATTTATATGGAAAGCATGGGAGGTATAATGATGTTCGAGAGCTTTTCCTTGAAATGAAAGAGAGTAGTGCGGAGCCAGATGCAACTACTTACAACATTCTCATACGAGTCTTCGGAGAGGGTGGATACTTTAAGGAGGTTGTAACTCTGTTTCATGATTTGGTGGAGGAGAAGATTGACCCCAATATGGAGACATATGAGGGGTTAGTATTTGCTTGTGGAAAGGGAGGGTTGCACGAGGATGCCAAGAAAATATTTCTTCACATGAATGAGAAAGGCATAGTTCCAAGTTCTAATGCATACAGTGGTCTGATTGAAGCATATGGACAGGCTGCATTGTATGACGAAGCTCTTGTTGCCTTCAACACAATGAACGAAATAGGAAGTAAGTCAACTGTTGATACCTACAACTCACTAATTCACACATTTGCTAGAGGTGGACTCTACAAGGAGTTTGAGGCAACCTTGTTGAGAATGAGAGAATTTGGCATTTCAAGGAATGTGAAGTCGTTTAGTGGTATTATTGATGGTTATAGACAAGGTGGTCAGTTTGAGGAAGCTATAAAGTCCTTTGTTGAGATGGAAAAGATGAGATGTGAACCTGATGAACAGACACTCGAGGCAGTTTTAGGTGTTTATTGCTTTGCAGGTCTTGTTGATGAGAGCAAGGAGCAGTTTCAAGAAATTAAAGCTTCAGGAATATTGCCTAGTGTATTGTGCTACTGTATGATGCTGGCAGTTTATGCCAAGAACGGCAGGTACTAATTAAATTACTATGTTCATGTATTCTATGAGAGTAATATTCATTATCAACTTATGTTTTCTTAATTTTGTTTCATTGATGTATACTGTACATGTTAGTTTTCTCTTGAACATATTTTGTGCTCAAGATTCAGTCTAGTTAGAATTTTATTCCATCTAGAAATCTGTCAGGCAATGGATTTTGGTTAGTTAGAATGTGCAGTTATATGAGATGACTGGAGCTTGTTAGAGATTTATAGGAGAAATTGTCAATGGACGACAGTTATAAATAAGAGAAGAGGGCAGTAACTAGTAAGGGGAGGGGAGGGGAGGTGGATTCAAGAGAGAGGTATTCAAGTTTCTCAACTTACACGCCAACAAGAGCAGTTGCTTAGCGGCATTAGTGTACACCCAATGACTAAGAGGTCTTGGATTTGAATCCTCCCACCCCCAACCGTTGTAATCTCAAAAAAAAAAAAAAAAGTTTCTCAACTTACACATTTATTTGAATTGTGACATAGATGATATTGATTATTCTATTCTCTCTCTCAGCTCTATAAATTATTTTCGTAGTCTTATTATGATCTTGAGAACTTGGAGATTGGCCTACAACAAGCCACAAGCAGACTTGAATATGACATGTAAAGTTACCATACTAGACTACCGATTTTAGGATGTGATTCATTATGGAAATGAAAAACGAGCTAATTTATTAACATGGTGTAGTGTCTTGTCAACTTGTAAGATAAAGGAGGTCATGTTTAAGATCTTCGTTCTCTTTTTTAGCTGTCAAGTGTCAACTTAGTTGACAGGATTGCAGATCATAAGAAGATCGGCAGGAGCTGCTTGAAGTTGGATAACTTCATCTAACTTTTAAATTGCATTCTTCCTTTGCTGAGCCATAACATTTTTCGGCTGACTGCCTTAGTAGAATGCTAATAAGAGGTTAATGAAGACATCTTGGATGGTTCCGAATCGGGAAGAAGCTCATTATCAGTACTCTCTGATTTGTGGATAGAATATAGATTATCCTCTTCTCCTCCATAGAGAAAATCAGCAATCTTCTCAAAATCATATATCTTCTTCAGACCATTGTATCGGATGCAGTCTCTTAAAATCAATATTGCCGAGAATCAACTATACTATTGATGTACAAGAATTGGCAGATGCACGGAGCTATATAGTAGATAAATGGCCCATGCTTTATTCGGTCTTCCTTTGAATGGATATGAAAGAATCAACTTCAAGAAACCATCACAGGTTGTCTTAATGGTCAAATAAGGGCCATAGAAAGACGTTTTTACTCTAAAATAGCAATTGGCCTCAAGAGTAAAAATTATGGTGGGGAACGAAGAAAATACCAAATTTTGAGAAGACAATTGGAAGGATACTGATAAGGTTGGGCCTAGGGCTCGATTGGGCCTAGGGCTCTATTTAGCCATTACTTGGAGAATAAGTTAGTATTTTGTTATAAATAGAGTGGGTTAGGTTAGAGTTTAGGCATCCAATTGTTAAATGAGTTATTGAGTGATTTATTGTAAGGGCTCAAGAGATTCTCTTGAGAAGGGAGGTTCCAAGTTCCTATCAAAACTTGGTTTATCTTTATTCTTTTATCTTTTGATATAATCTAGATCCTGGATCATATCAATTGGTATCAGAGCCGTTCGATTCTTGGTTGTAGAGATGGATCAAGAGGTTCTTCGTTTCATTCAAGAAAAGTTGCAAAGTTTGATGGTGGACTTGAAAAAGACCTCGGAGAAAGAGGTAGCTTCTCTAAAAAAGAAATTAGAGAAGACCTAAAGGAGAGTTTCAATGACCTAAAACGATGTTTTAGGGAGGAAATTAGGTTGGAAAAAACAATGACGGCTAGGGTTTTGACCCGCCACCACCGCCTCCTCCGTTGCCGCCTCCGCCTTCCCCACCGTCGTTGCTGCCGCCGCTGCCCTACCTCCGCCACCATCACCAACCCCACCTGCGGCGCTGCTGCCGCCGCCGTCACCACCTCCGCCACCACCATCGCCGCCACCACTTCTAACATCGCCGCCGCCATCTCCACCGTCACCACCTCCGACACTGCCGCCGCCACCACCACCAGTGTTGCCGCTACTGTCATCACCACCACCTCTGTCACTGCTGCCTCCACCACCGACTCGCCGCTGCTGCCGCCGGAAAAAAAAAAAAAAAAAAAAAAAATCTATTTTTGTTTATGCCCACCTTGAGGACAAGGTGCTTTAAAGGGGCGGGTATTGATAAGGTTGGGCCTAGGGCTCGATTGGGCCTAGGGCTCTATTTAGCCATTACTTGGAGAATAAGTTAGTATTTTGTTATAAATAGAGTGGGTTAGGTTAGAGTTTAGGCATCCAATTGTTAAATGAGTTATTGAGTGATTTATTGTAAGGGCTCAAGAGATTCTCTTGAGAAGGGAGGTTCCAAGTTCCTATCAAAACTTGGTTTATCTTTATTCTTTTATCTTTTGATATAATCTAGATCCTGGATCATATCAGATACATAAATTCTCTCTATAGTACAGGCTACATCAATGACCTCTACATCAGTCTAATGTGGAATTCCTTAAGTTAGACTCGGGTTTAAATTTGAGTAGGATGCTGATGACTTGGAAGTCAGAGAATGGATATTCCTCCTAAACACCCACTGTGACCTTTATTTAGGCTGGTGGAATACAAATGTAGATGGCTTTGTGATTTCACCTATTCTTTCACTTTGCAAATGTCGTCATGAAGACTTCACTAGTGTTTTTTATTTTTTATTTTTTAATAGAAGAGAGTCAAAAAACTCGTGTGGAATAGGTGCAGGCACATTGCAACCAAATCAATCAGCTGCTTTGCTCTCAAGACCTCATCATTTTCTCTTCAACAAGTTAATTGAAGCTCTAACCCTAACCGTGAAACAAATGAATTTGACTTCACTACTGTTATAACCAGAACCTTGGGAAATAGGTATGGATGGATAAATACCCAAGGTAAAATTTAAAGGAAGAGTCCAAACCTCAGGATTTTATTAAGTTTTATATGGAAAGCCAACAGGGTGACACAAAAATCTAATTGTTCTTGCCCCATGGCCTTCCGATTATGCAATTACATTTTGGTAATTTTGTCCGGCCTGCTCCTTTTCTCGGCAACCAATCTGCTGTACTTCCTCTTTCGAGGGCATCTGTTTAAAGATATATAACTACGTTCCTCTAGTTAAACCTTTCTCCTTTCTGATGTGGATGAGATAATTGTCATGCTTGCTACTAGGTGTAAACTTTACAATTCTTGTTGTAATTATAGTTCAACCTCTGTTTATGCTAGTTGAAAGTTCCTTTTGCAACTTCTTTAACTTGGATTGGGGGTTTCCTCTCTCTTCTAATAATAATTCACTTCATCAATAAAATACTTCGTTGAAAAAGGAAAAGTTTAAACTTTCTGCATTATGTCATTTGTATTAGTGAAGTCAATAGTCATTTATGTGCTCACCAAATTAGAGTTCTAGGGAAGAGTTTGTCAGTTGTCATAGGTTGCTTACTTTTACCTTCCAAGAGCATTACGTTTTCCTGGGTGAATTAACTATTAGAGTTGGACCATTTGAAGAAACATATGGTTTGGAATCTTACAGTCCTAAAGTCATCACTGCACTAAATTTGATTTTTAAACCTCCGATCTTCTGGTTGATAGAATTCACTAACACGTTATTGTAATGGTCTCACTTACATCTCCGGGTGCATCCTTTCCAGGTGGGATGAGGCCTACGAGTTACTCGATGAGATGATTACAAACAGAGTATCTAGTATTCATCAAGTCATTGGCCAGATGATCAAGGGAGATTACGATGATGAGTCTAATTGGCAGATGGTCGAGTATGTTTTTGACAAACTTAACGCCGAAGGGTGTGGATTGGGAATGAGATTTTACAATACACTGTTGGAAGCACTTTGGTGGCTTGGCCAGAAAGGGCGTGCTGCAAGGGTTCTCACCGAAGCAACAAAACGAGGCCTTTTCCCCGAACTTTTCCGTGAAAGCAAACTTGTGTGGTCTGTGGATGTGCACAGGTAAAATAGGAATTGTTTTTTTCTTCCGTGCTTAAGTTTATATACTAATTCGTATGCCTGGCATTTCGGCAGAATGTGGGAAGGAGGTGCATATACAGCAATATCACTATGGGTTAACAAAATGAACGAAATGCTTATGGATGGGGAGAATCTCCCTCAGCTTGCAGCTGTTGTAGTTGGGTAAGCTTCATTTACCTTGCAATCAATTTAATCAAAATTAACGTATTTTTTTAACCTTTTAAACTGAAGTGCATGCATGGTGGAGGCATATATATAAGAGGGTTTCATAATCCAGCTGAAGCTAAACTTGTCGTTTTGGGATCATTGGACTTGACTAACTTTGTGAAAACTACCATGAATTGGCCTAGTTGTGAAATAAAGAGTCTTGTGAATCTAAAGGTTATGGTTCAAACCACGAAGACTACCTACCGAAGATTTATTTCATTGTGATAAGGTCAGACAGTTGTCTAGAATAGTTGAAATAACATGTAAGTTGGCCCGGACACATGGTATAAAAAAAACTAATTTTTTGAAGCTAAAAAAGTGTACGTTGCTACTAGGCTGGTTAAAAATGTTCTTAAAATTTTTAGTTACTCACAAGACGCTCTGTATATGCTTTGATTTTAAGGAAGGAGTGAATGGAGTATCTGAAATGCTACTAGGCTGGTCAACCATGAATTTCTGACCATTGGTTAGCAGCTATAAATTGTGAAATAGCACTGTCCGGGTTAATCATCTCTACTAATTAGAGTATCTGAAATGCCCTTGTTTGATTAGATAGGAAAGCTAGTTGCCATATCGGAAAAAATCAACTCTTTTCTCACATCGTGAAATTCAACTTGCCTTGTCTAACTGTTAAAAGGGTTCATTGATAGTTTGTCAACCGTTTATTTTTAAAATTTCAGAAGGGGCTGGTTAGAGAAAGACTCAACAGCACAAAACTTGCCAATTGCAAAGGCCGTCTATTCATTCCTGCAGGATAACGTGTCATCGTCCTTCTCTTTTCCGAGGTGGAACAACGGTCGAATTGTCTGCCAACAGTCTCAACTGAAGCAACTCCTCTCCAACGCAGAAGCATCATCTGGTGAAATTATTATTCTAAAAAATTCCCCTTTAACTTTTCCAGAAGTAAAGGTATCCAGATCTGGTATAAACAATGATAAATACAAAGATGTTGATTCTAAATCGAGTAATCGGACGGGAACTGAGCTTCTGACCACAACTGTTTGAAGGAAATACATAGCTGATCTAGTTTCCAAGTTTTGAAACTCATCCCTCCGATTCTTAAGAGAAGGATGTTGATCCATAGTGCTCAACATATCAAATACCAGCTCTGGAAAGAACTTGCCAAGTGATAGCATCAGAGCCTTCAGGCGATGGCAGCGTTTTCTTGCAACATTGCTTGGGATGACTACTTATAAAGCCATTTTGATCTCGATCCAAGGAAGAAGATGCATGCCCATGGAACAGGTCAGTGTTTTTTGTAGCTGTAGAATTAAAATTATTCACTGGAAAATGCTTGGTAATTATTAGAACAGCGGTTAAAGTATCTGTGAACTAATCAGGGAGATGTAAAATCACTTAGATTTGGAATTCCACAGCTATGCCGAAAAAGATATGAGGATTAGCAAAGTTTTTCACTTATTTGCAGTCTCTTCTTCTACATTTTAGGCCTGTTTGTTTTCGAAGTTTTGTTTTTAATAATTACATAACTCATGGGGTGAATCAATGGAGAGATTACTTTGTTGTAGTTCTTTTGCACCTTTTTAAGGCGGAGTTTGTTTGAGTCTGGTTTATAGGTGGGTTAGGTTAAGTTATTATAATTTAACCCGAGTTTGGGCCACCGGTTATAATTGGTGGATTAGCTTGTAACACTTCATCCCAATTATAATAACTCTTAACCTTGTTATAAATAATCCATTGTTATAATAATATGTGCTTCAAACGTCTCTAAAAGATTGCGCGGTGGTCGATAGCTTAGATTTTGAAAGTGTG

mRNA sequence

CAGCTCTCATCTTCTCCGATTGTTCTTCGCTGCTGCAACTTCGCCGGAGAAATCAGTTCTCAAATTCCCACTGGTTTTCATCTCAATCTGTTCTTCATCTCGAACGAAATCGATAACTATTGGGAAATTCCATTTCGATAATCTTCATGTTCTTAGCTGCTGAAACGATTACTCGTTTCCTCTAATGGCGCTCTCACCGTACTTGTCCGTGCCAAATCCTTTTCAACCGCCGACGACGTTTCAGAAACGGTATTTAGAGCCTCACAATCTTCCACTTCTCATTAAACCCTCCAATTTCACTCTTCGCCGTCGATTTCTCTCCGATGACCGGCGCCTGTTTTCCGACGCCGGGAAGTGCAGAGCGAAGCCGAAGGATCTCGTTCTCGGAAATCCATCGGTGATTGTCGAGAAGGGAAAGTACAGCTACGATGTCGAAACCCTAATAAACAAGCTTAGCAGCCTCCCGCCGCGAGGTAGCATAGCTCGTTGTCTCGATATCTTTAAGAACAGGCTTTCGCTCAATGATTTCAGCTTGGTTTTCAAGGAATTTGCGGCCCGTGGGGACTGGCAACGCTCGTTGCGCCTCTTCAAGTATATGCAGCGGCAGATATGGTGTAAGCCGAACGAGCATATCTATACCATCATGATTAGTTTGCTTGGTCGCGAAGGATTGCTGGAGAAATGCAGCGAGGTGTTTGACGAAATGTCGAGCCAGGGCGTGGTACGTAGCGTGTTTTCTTATACTGCTTTGATTAATGCCTATGGACGCAATGGTCGGTATGAAACTTCGCTTGAACTTCTTGAGAGGATGAAGAGAGACCGAGTGTCGCCTAATATATTGACTTACAATACTGTGATAAATGCTTGTGCTAGAGGTGATTTAGATTGGGAGGGATTGTTGGGGTTGTTTGCTGAAATGAGGCATGAAGGGGTTCAGCCTGATTTGGTTACTTATAATACTTTGCTTAGTGCTTGCGCCGCTCGAGGTTTAGGCGACGAGGCAGAGATGGTCTTTAAGACTATGATAGAGGGAGGGATAGTCCCGGAGATAACAACATACAGTTCTGTTGTTGAAACATTTGGAAAATTGGGTAAGCTTGAGAAAGTTGCTATACTGCTAAAAGAAATGGAATCCGAAGGGTATTTGCCTGATATATCATCCTACAATGTGTTAATAGAGGCACATGCGAAATCAGGATCGATTAAGGAGGCAATGGATGTGTTTAAGCAGATGCAAGCAGCAGGGTGTGTGCCAAATGCATCCACTTACAGTATTCTGTTGAATTTATATGGAAAGCATGGGAGGTATAATGATGTTCGAGAGCTTTTCCTTGAAATGAAAGAGAGTAGTGCGGAGCCAGATGCAACTACTTACAACATTCTCATACGAGTCTTCGGAGAGGGTGGATACTTTAAGGAGGTTGTAACTCTGTTTCATGATTTGGTGGAGGAGAAGATTGACCCCAATATGGAGACATATGAGGGGTTAGTATTTGCTTGTGGAAAGGGAGGGTTGCACGAGGATGCCAAGAAAATATTTCTTCACATGAATGAGAAAGGCATAGTTCCAAGTTCTAATGCATACAGTGGTCTGATTGAAGCATATGGACAGGCTGCATTGTATGACGAAGCTCTTGTTGCCTTCAACACAATGAACGAAATAGGAAGTAAGTCAACTGTTGATACCTACAACTCACTAATTCACACATTTGCTAGAGGTGGACTCTACAAGGAGTTTGAGGCAACCTTGTTGAGAATGAGAGAATTTGGCATTTCAAGGAATGTGAAGTCGTTTAGTGGTATTATTGATGGTTATAGACAAGGTGGTCAGTTTGAGGAAGCTATAAAGTCCTTTGTTGAGATGGAAAAGATGAGATGTGAACCTGATGAACAGACACTCGAGGCAGTTTTAGGTGTTTATTGCTTTGCAGGTCTTGTTGATGAGAGCAAGGAGCAGTTTCAAGAAATTAAAGCTTCAGGAATATTGCCTAGTGTATTGTGCTACTGTATGATGCTGGCAGTTTATGCCAAGAACGGCAGGTGGGATGAGGCCTACGAGTTACTCGATGAGATGATTACAAACAGAGTATCTAGTATTCATCAAGTCATTGGCCAGATGATCAAGGGAGATTACGATGATGAGTCTAATTGGCAGATGGTCGAGTATGTTTTTGACAAACTTAACGCCGAAGGGTGTGGATTGGGAATGAGATTTTACAATACACTGTTGGAAGCACTTTGGTGGCTTGGCCAGAAAGGGCGTGCTGCAAGGGTTCTCACCGAAGCAACAAAACGAGGCCTTTTCCCCGAACTTTTCCGTGAAAGCAAACTTGTGTGGTCTGTGGATGTGCACAGAATGTGGGAAGGAGGTGCATATACAGCAATATCACTATGGGTTAACAAAATGAACGAAATGCTTATGGATGGGGAGAATCTCCCTCAGCTTGCAGCTGTTGTAGTTGGAAGGGGCTGGTTAGAGAAAGACTCAACAGCACAAAACTTGCCAATTGCAAAGGCCGTCTATTCATTCCTGCAGGATAACGTGTCATCGTCCTTCTCTTTTCCGAGGTGGAACAACGGTCGAATTGTCTGCCAACAGTCTCAACTGAAGCAACTCCTCTCCAACGCAGAAGCATCATCTGGTGAAATTATTATTCTAAAAAATTCCCCTTTAACTTTTCCAGAAGTAAAGGTATCCAGATCTGGTATAAACAATGATAAATACAAAGATGTTGATTCTAAATCGAGTAATCGGACGGGAACTGAGCTTCTGACCACAACTGTTTGAAGGAAATACATAGCTGATCTAGTTTCCAAGTTTTGAAACTCATCCCTCCGATTCTTAAGAGAAGGATGTTGATCCATAGTGCTCAACATATCAAATACCAGCTCTGGAAAGAACTTGCCAAGTGATAGCATCAGAGCCTTCAGGCGATGGCAGCGTTTTCTTGCAACATTGCTTGGGATGACTACTTATAAAGCCATTTTGATCTCGATCCAAGGAAGAAGATGCATGCCCATGGAACAGGTCAGTGTTTTTTGTAGCTGTAGAATTAAAATTATTCACTGGAAAATGCTTGGTAATTATTAGAACAGCGGTTAAAGTATCTGTGAACTAATCAGGGAGATGTAAAATCACTTAGATTTGGAATTCCACAGCTATGCCGAAAAAGATATGAGGATTAGCAAAGTTTTTCACTTATTTGCAGTCTCTTCTTCTACATTTTAGGCCTGTTTGTTTTCGAAGTTTTGTTTTTAATAATTACATAACTCATGGGGTGAATCAATGGAGAGATTACTTTGTTGTAGTTCTTTTGCACCTTTTTAAGGCGGAGTTTGTTTGAGTCTGGTTTATAGGTGGGTTAGGTTAAGTTATTATAATTTAACCCGAGTTTGGGCCACCGGTTATAATTGGTGGATTAGCTTGTAACACTTCATCCCAATTATAATAACTCTTAACCTTGTTATAAATAATCCATTGTTATAATAATATGTGCTTCAAACGTCTCTAAAAGATTGCGCGGTGGTCGATAGCTTAGATTTTGAAAGTGTG

Coding sequence (CDS)

ATGGCGCTCTCACCGTACTTGTCCGTGCCAAATCCTTTTCAACCGCCGACGACGTTTCAGAAACGGTATTTAGAGCCTCACAATCTTCCACTTCTCATTAAACCCTCCAATTTCACTCTTCGCCGTCGATTTCTCTCCGATGACCGGCGCCTGTTTTCCGACGCCGGGAAGTGCAGAGCGAAGCCGAAGGATCTCGTTCTCGGAAATCCATCGGTGATTGTCGAGAAGGGAAAGTACAGCTACGATGTCGAAACCCTAATAAACAAGCTTAGCAGCCTCCCGCCGCGAGGTAGCATAGCTCGTTGTCTCGATATCTTTAAGAACAGGCTTTCGCTCAATGATTTCAGCTTGGTTTTCAAGGAATTTGCGGCCCGTGGGGACTGGCAACGCTCGTTGCGCCTCTTCAAGTATATGCAGCGGCAGATATGGTGTAAGCCGAACGAGCATATCTATACCATCATGATTAGTTTGCTTGGTCGCGAAGGATTGCTGGAGAAATGCAGCGAGGTGTTTGACGAAATGTCGAGCCAGGGCGTGGTACGTAGCGTGTTTTCTTATACTGCTTTGATTAATGCCTATGGACGCAATGGTCGGTATGAAACTTCGCTTGAACTTCTTGAGAGGATGAAGAGAGACCGAGTGTCGCCTAATATATTGACTTACAATACTGTGATAAATGCTTGTGCTAGAGGTGATTTAGATTGGGAGGGATTGTTGGGGTTGTTTGCTGAAATGAGGCATGAAGGGGTTCAGCCTGATTTGGTTACTTATAATACTTTGCTTAGTGCTTGCGCCGCTCGAGGTTTAGGCGACGAGGCAGAGATGGTCTTTAAGACTATGATAGAGGGAGGGATAGTCCCGGAGATAACAACATACAGTTCTGTTGTTGAAACATTTGGAAAATTGGGTAAGCTTGAGAAAGTTGCTATACTGCTAAAAGAAATGGAATCCGAAGGGTATTTGCCTGATATATCATCCTACAATGTGTTAATAGAGGCACATGCGAAATCAGGATCGATTAAGGAGGCAATGGATGTGTTTAAGCAGATGCAAGCAGCAGGGTGTGTGCCAAATGCATCCACTTACAGTATTCTGTTGAATTTATATGGAAAGCATGGGAGGTATAATGATGTTCGAGAGCTTTTCCTTGAAATGAAAGAGAGTAGTGCGGAGCCAGATGCAACTACTTACAACATTCTCATACGAGTCTTCGGAGAGGGTGGATACTTTAAGGAGGTTGTAACTCTGTTTCATGATTTGGTGGAGGAGAAGATTGACCCCAATATGGAGACATATGAGGGGTTAGTATTTGCTTGTGGAAAGGGAGGGTTGCACGAGGATGCCAAGAAAATATTTCTTCACATGAATGAGAAAGGCATAGTTCCAAGTTCTAATGCATACAGTGGTCTGATTGAAGCATATGGACAGGCTGCATTGTATGACGAAGCTCTTGTTGCCTTCAACACAATGAACGAAATAGGAAGTAAGTCAACTGTTGATACCTACAACTCACTAATTCACACATTTGCTAGAGGTGGACTCTACAAGGAGTTTGAGGCAACCTTGTTGAGAATGAGAGAATTTGGCATTTCAAGGAATGTGAAGTCGTTTAGTGGTATTATTGATGGTTATAGACAAGGTGGTCAGTTTGAGGAAGCTATAAAGTCCTTTGTTGAGATGGAAAAGATGAGATGTGAACCTGATGAACAGACACTCGAGGCAGTTTTAGGTGTTTATTGCTTTGCAGGTCTTGTTGATGAGAGCAAGGAGCAGTTTCAAGAAATTAAAGCTTCAGGAATATTGCCTAGTGTATTGTGCTACTGTATGATGCTGGCAGTTTATGCCAAGAACGGCAGGTGGGATGAGGCCTACGAGTTACTCGATGAGATGATTACAAACAGAGTATCTAGTATTCATCAAGTCATTGGCCAGATGATCAAGGGAGATTACGATGATGAGTCTAATTGGCAGATGGTCGAGTATGTTTTTGACAAACTTAACGCCGAAGGGTGTGGATTGGGAATGAGATTTTACAATACACTGTTGGAAGCACTTTGGTGGCTTGGCCAGAAAGGGCGTGCTGCAAGGGTTCTCACCGAAGCAACAAAACGAGGCCTTTTCCCCGAACTTTTCCGTGAAAGCAAACTTGTGTGGTCTGTGGATGTGCACAGAATGTGGGAAGGAGGTGCATATACAGCAATATCACTATGGGTTAACAAAATGAACGAAATGCTTATGGATGGGGAGAATCTCCCTCAGCTTGCAGCTGTTGTAGTTGGAAGGGGCTGGTTAGAGAAAGACTCAACAGCACAAAACTTGCCAATTGCAAAGGCCGTCTATTCATTCCTGCAGGATAACGTGTCATCGTCCTTCTCTTTTCCGAGGTGGAACAACGGTCGAATTGTCTGCCAACAGTCTCAACTGAAGCAACTCCTCTCCAACGCAGAAGCATCATCTGGTGAAATTATTATTCTAAAAAATTCCCCTTTAACTTTTCCAGAAGTAAAGGTATCCAGATCTGGTATAAACAATGATAAATACAAAGATGTTGATTCTAAATCGAGTAATCGGACGGGAACTGAGCTTCTGACCACAACTGTTTGA

Protein sequence

MALSPYLSVPNPFQPPTTFQKRYLEPHNLPLLIKPSNFTLRRRFLSDDRRLFSDAGKCRAKPKDLVLGNPSVIVEKGKYSYDVETLINKLSSLPPRGSIARCLDIFKNRLSLNDFSLVFKEFAARGDWQRSLRLFKYMQRQIWCKPNEHIYTIMISLLGREGLLEKCSEVFDEMSSQGVVRSVFSYTALINAYGRNGRYETSLELLERMKRDRVSPNILTYNTVINACARGDLDWEGLLGLFAEMRHEGVQPDLVTYNTLLSACAARGLGDEAEMVFKTMIEGGIVPEITTYSSVVETFGKLGKLEKVAILLKEMESEGYLPDISSYNVLIEAHAKSGSIKEAMDVFKQMQAAGCVPNASTYSILLNLYGKHGRYNDVRELFLEMKESSAEPDATTYNILIRVFGEGGYFKEVVTLFHDLVEEKIDPNMETYEGLVFACGKGGLHEDAKKIFLHMNEKGIVPSSNAYSGLIEAYGQAALYDEALVAFNTMNEIGSKSTVDTYNSLIHTFARGGLYKEFEATLLRMREFGISRNVKSFSGIIDGYRQGGQFEEAIKSFVEMEKMRCEPDEQTLEAVLGVYCFAGLVDESKEQFQEIKASGILPSVLCYCMMLAVYAKNGRWDEAYELLDEMITNRVSSIHQVIGQMIKGDYDDESNWQMVEYVFDKLNAEGCGLGMRFYNTLLEALWWLGQKGRAARVLTEATKRGLFPELFRESKLVWSVDVHRMWEGGAYTAISLWVNKMNEMLMDGENLPQLAAVVVGRGWLEKDSTAQNLPIAKAVYSFLQDNVSSSFSFPRWNNGRIVCQQSQLKQLLSNAEASSGEIIILKNSPLTFPEVKVSRSGINNDKYKDVDSKSSNRTGTELLTTTV

Homology

[Close]

BLAST of Sed0019903 vs. NCBI nr
Match: XP_038894203.1 (pentatricopeptide repeat-containing protein At1g74850, chloroplastic isoform X1 [Benincasa hispida])

HSP 1 Score: 1635.5 bits (4234), Expect = 0.0e+00
Identity = 807/867 (93.08%), Postives = 833/867 (96.08%), Query Frame = 0


Query: 1   MALSPYLSVPNPFQPPTTFQKRYLEPHNLPLLIKPSNFTLRRRFLSDDRRLFSDAGKCRA 60
           MALSPYLSVPNPF+  TTFQKRYLE   LP L K SNF++RRRF SDD  L SD  KCRA
Sbjct: 1   MALSPYLSVPNPFKTSTTFQKRYLECQQLPFLSKLSNFSVRRRFFSDDWSLSSDVAKCRA 60

Query: 61  KPKDLVLGNPSVIVEKGKYSYDVETLINKLSSLPPRGSIARCLDIFKNRLSLNDFSLVFK 120
           KPKDLVLGNPSVIVEKGKYSYDVETLINKLSSLPPRGSIARCLDIFKNRLSLNDFSLVFK
Sbjct: 61  KPKDLVLGNPSVIVEKGKYSYDVETLINKLSSLPPRGSIARCLDIFKNRLSLNDFSLVFK 120

Query: 121 EFAARGDWQRSLRLFKYMQRQIWCKPNEHIYTIMISLLGREGLLEKCSEVFDEMSSQGVV 180
           EFAARGDWQRSLRLFKYMQRQIWCKPNEHIYTIMISLLGREGLLEKCSE+FDEM+SQGV+
Sbjct: 121 EFAARGDWQRSLRLFKYMQRQIWCKPNEHIYTIMISLLGREGLLEKCSEIFDEMASQGVI 180

Query: 181 RSVFSYTALINAYGRNGRYETSLELLERMKRDRVSPNILTYNTVINACARGDLDWEGLLG 240
           RSVFSYTALINAYGRNG+YETSLELLERMKR+RVSPNILTYNTVINACARGDLDWEGLLG
Sbjct: 181 RSVFSYTALINAYGRNGQYETSLELLERMKRERVSPNILTYNTVINACARGDLDWEGLLG 240

Query: 241 LFAEMRHEGVQPDLVTYNTLLSACAARGLGDEAEMVFKTMIEGGIVPEITTYSSVVETFG 300
           LFAEMRHEGVQPDLVTYNTLLSACAARGLGDEAEMVFKTM+EGGIVPEITTYS +VETFG
Sbjct: 241 LFAEMRHEGVQPDLVTYNTLLSACAARGLGDEAEMVFKTMVEGGIVPEITTYSYIVETFG 300

Query: 301 KLGKLEKVAILLKEMESEGYLPDISSYNVLIEAHAKSGSIKEAMDVFKQMQAAGCVPNAS 360
           KLGKLEKVA+LLKEMESEGYLPDISSYNVLIEAHAKSGSIKEAMDVFKQMQAAGCVPNAS
Sbjct: 301 KLGKLEKVAMLLKEMESEGYLPDISSYNVLIEAHAKSGSIKEAMDVFKQMQAAGCVPNAS 360

Query: 361 TYSILLNLYGKHGRYNDVRELFLEMKESSAEPDATTYNILIRVFGEGGYFKEVVTLFHDL 420
           TYSILLNLYGKHGRY+DVRELFLEMKESSAEPDATTYNILIRVFGEGGYFKEVVTLFHDL
Sbjct: 361 TYSILLNLYGKHGRYDDVRELFLEMKESSAEPDATTYNILIRVFGEGGYFKEVVTLFHDL 420

Query: 421 VEEKIDPNMETYEGLVFACGKGGLHEDAKKIFLHMNEKGIVPSSNAYSGLIEAYGQAALY 480
           VEEKIDPNMETYEGLV+ACGKGGLHEDAKKI  HMNEKG+VPSS AYSGLIEAYGQAALY
Sbjct: 421 VEEKIDPNMETYEGLVYACGKGGLHEDAKKIIRHMNEKGMVPSSKAYSGLIEAYGQAALY 480

Query: 481 DEALVAFNTMNEIGSKSTVDTYNSLIHTFARGGLYKEFEATLLRMREFGISRNVKSFSGI 540
           DEALVAFNTMNE+GSKSTVDTYNSLIHTFARGGLYKEFEA LLRMRE GISRN KSFSGI
Sbjct: 481 DEALVAFNTMNEVGSKSTVDTYNSLIHTFARGGLYKEFEAILLRMREHGISRNAKSFSGI 540

Query: 541 IDGYRQGGQFEEAIKSFVEMEKMRCEPDEQTLEAVLGVYCFAGLVDESKEQFQEIKASGI 600
           I+GYRQ GQFEEAIK+FVEMEKMR EPDEQTLEAVLGVYCFAGLVDESKEQF EIKASGI
Sbjct: 541 IEGYRQSGQFEEAIKAFVEMEKMRFEPDEQTLEAVLGVYCFAGLVDESKEQFHEIKASGI 600

Query: 601 LPSVLCYCMMLAVYAKNGRWDEAYELLDEMITNRVSSIHQVIGQMIKGDYDDESNWQMVE 660
           LP+VLCYCMMLAVYAKNGRWD+AYELLDEMI NRVSSIHQVIGQMIKGDYDD+SNWQMVE
Sbjct: 601 LPNVLCYCMMLAVYAKNGRWDDAYELLDEMIKNRVSSIHQVIGQMIKGDYDDDSNWQMVE 660

Query: 661 YVFDKLNAEGCGLGMRFYNTLLEALWWLGQKGRAARVLTEATKRGLFPELFRESKLVWSV 720
           YVFDKLNAEGCGLGMRFYNTLLEALWWLGQKGRAARVLTEATKRGLFPELFR+ KLVWSV
Sbjct: 661 YVFDKLNAEGCGLGMRFYNTLLEALWWLGQKGRAARVLTEATKRGLFPELFRKRKLVWSV 720

Query: 721 DVHRMWEGGAYTAISLWVNKMNEMLMDGENLPQLAAVVVGRGWLEKDSTAQNLPIAKAVY 780
           DVHRMWEG AYTA+SLWVNKMNEMLMDGE+LPQLAAVVVGRGWLEKDSTAQNLPIA+AVY
Sbjct: 721 DVHRMWEGSAYTALSLWVNKMNEMLMDGEDLPQLAAVVVGRGWLEKDSTAQNLPIARAVY 780

Query: 781 SFLQDNVSSSFSFPRWNNGRIVCQQSQLKQLLSNAEASSGEIIILKNSPLTFPEVKVSRS 840
           SFLQDNVSSSFSFP WNNGRIVCQQSQLKQLLSNAEASS EII L NSPL  PE K+SRS
Sbjct: 781 SFLQDNVSSSFSFPGWNNGRIVCQQSQLKQLLSNAEASSSEIITLNNSPLNLPEAKISRS 840

Query: 841 GINNDKYKDVDSKSSNRTGTELLTTTV 868
           GINNDKYKDVDSKSSNRTGTELLTTT+
Sbjct: 841 GINNDKYKDVDSKSSNRTGTELLTTTI 867

[Close]

BLAST of Sed0019903 vs. NCBI nr
Match: XP_038894204.1 (pentatricopeptide repeat-containing protein At1g74850, chloroplastic isoform X2 [Benincasa hispida])

HSP 1 Score: 1628.6 bits (4216), Expect = 0.0e+00
Identity = 806/867 (92.96%), Postives = 832/867 (95.96%), Query Frame = 0


Query: 1   MALSPYLSVPNPFQPPTTFQKRYLEPHNLPLLIKPSNFTLRRRFLSDDRRLFSDAGKCRA 60
           MALSPYLSVPNPF+  TTFQKRYLE   LP L K SNF++RRRF SDD  L SD  KCRA
Sbjct: 1   MALSPYLSVPNPFKTSTTFQKRYLECQQLPFLSKLSNFSVRRRFFSDDWSLSSDVAKCRA 60

Query: 61  KPKDLVLGNPSVIVEKGKYSYDVETLINKLSSLPPRGSIARCLDIFKNRLSLNDFSLVFK 120
           KPKDLVLGNPSVIVEKGKYSYDVETLINKLSSLPPRGSIARCLDIFKNRLSLNDFSLVFK
Sbjct: 61  KPKDLVLGNPSVIVEKGKYSYDVETLINKLSSLPPRGSIARCLDIFKNRLSLNDFSLVFK 120

Query: 121 EFAARGDWQRSLRLFKYMQRQIWCKPNEHIYTIMISLLGREGLLEKCSEVFDEMSSQGVV 180
           EFAARGDWQRSLRLFKYMQRQIWCKPNEHIYTIMISLLGREGLLEKCSE+FDEM+SQGV+
Sbjct: 121 EFAARGDWQRSLRLFKYMQRQIWCKPNEHIYTIMISLLGREGLLEKCSEIFDEMASQGVI 180

Query: 181 RSVFSYTALINAYGRNGRYETSLELLERMKRDRVSPNILTYNTVINACARGDLDWEGLLG 240
           RSVFSYTALINAYGRNG+YETSLELLERMKR+RVSPNILTYNTVINACARGDLDWEGLLG
Sbjct: 181 RSVFSYTALINAYGRNGQYETSLELLERMKRERVSPNILTYNTVINACARGDLDWEGLLG 240

Query: 241 LFAEMRHEGVQPDLVTYNTLLSACAARGLGDEAEMVFKTMIEGGIVPEITTYSSVVETFG 300
           LFAEMRHEGVQPDLVTYNTLLSACAARGLGDEAEMVFKTM+EGGIVPEITTYS +VETFG
Sbjct: 241 LFAEMRHEGVQPDLVTYNTLLSACAARGLGDEAEMVFKTMVEGGIVPEITTYSYIVETFG 300

Query: 301 KLGKLEKVAILLKEMESEGYLPDISSYNVLIEAHAKSGSIKEAMDVFKQMQAAGCVPNAS 360
           KLGKLEKVA+LLKEMESEGYLPDISSYNVLIEAHAKSGSIKEAMDVFKQMQAAGCVPNAS
Sbjct: 301 KLGKLEKVAMLLKEMESEGYLPDISSYNVLIEAHAKSGSIKEAMDVFKQMQAAGCVPNAS 360

Query: 361 TYSILLNLYGKHGRYNDVRELFLEMKESSAEPDATTYNILIRVFGEGGYFKEVVTLFHDL 420
           TYSILLNLYGKHGRY+DVRELFLEMKESSAEPDATTYNILIRVFGEGGYFKEVVTLFHDL
Sbjct: 361 TYSILLNLYGKHGRYDDVRELFLEMKESSAEPDATTYNILIRVFGEGGYFKEVVTLFHDL 420

Query: 421 VEEKIDPNMETYEGLVFACGKGGLHEDAKKIFLHMNEKGIVPSSNAYSGLIEAYGQAALY 480
           VEEKIDPNMETYEGLV+ACGKGGLHEDAKKI  HMNEKG+VPSS AYSGLIEAYGQAALY
Sbjct: 421 VEEKIDPNMETYEGLVYACGKGGLHEDAKKIIRHMNEKGMVPSSKAYSGLIEAYGQAALY 480

Query: 481 DEALVAFNTMNEIGSKSTVDTYNSLIHTFARGGLYKEFEATLLRMREFGISRNVKSFSGI 540
           DEALVAFNTMNE+GSKSTVDTYNSLIHTFARGGLYKEFEA LLRMRE GISRN KSFSGI
Sbjct: 481 DEALVAFNTMNEVGSKSTVDTYNSLIHTFARGGLYKEFEAILLRMREHGISRNAKSFSGI 540

Query: 541 IDGYRQGGQFEEAIKSFVEMEKMRCEPDEQTLEAVLGVYCFAGLVDESKEQFQEIKASGI 600
           I+GYRQ GQFEEAIK+FVEMEKMR EPDEQTLEAVLGVYCFAGLVDESKEQF EIKASGI
Sbjct: 541 IEGYRQSGQFEEAIKAFVEMEKMRFEPDEQTLEAVLGVYCFAGLVDESKEQFHEIKASGI 600

Query: 601 LPSVLCYCMMLAVYAKNGRWDEAYELLDEMITNRVSSIHQVIGQMIKGDYDDESNWQMVE 660
           LP+VLCYCMMLAVYAKNGRWD+AYELLDEMI NRVSSIHQVIGQMIKGDYDD+SNWQMVE
Sbjct: 601 LPNVLCYCMMLAVYAKNGRWDDAYELLDEMIKNRVSSIHQVIGQMIKGDYDDDSNWQMVE 660

Query: 661 YVFDKLNAEGCGLGMRFYNTLLEALWWLGQKGRAARVLTEATKRGLFPELFRESKLVWSV 720
           YVFDKLNAEGCGLGMRFYNTLLEALWWLGQKGRAARVLTEATKRGLFPELFR+ KLVWSV
Sbjct: 661 YVFDKLNAEGCGLGMRFYNTLLEALWWLGQKGRAARVLTEATKRGLFPELFRKRKLVWSV 720

Query: 721 DVHRMWEGGAYTAISLWVNKMNEMLMDGENLPQLAAVVVGRGWLEKDSTAQNLPIAKAVY 780
           DVHRMWEG AYTA+SLWVNKMNEMLMDGE+LPQLAAVVVG GWLEKDSTAQNLPIA+AVY
Sbjct: 721 DVHRMWEGSAYTALSLWVNKMNEMLMDGEDLPQLAAVVVG-GWLEKDSTAQNLPIARAVY 780

Query: 781 SFLQDNVSSSFSFPRWNNGRIVCQQSQLKQLLSNAEASSGEIIILKNSPLTFPEVKVSRS 840
           SFLQDNVSSSFSFP WNNGRIVCQQSQLKQLLSNAEASS EII L NSPL  PE K+SRS
Sbjct: 781 SFLQDNVSSSFSFPGWNNGRIVCQQSQLKQLLSNAEASSSEIITLNNSPLNLPEAKISRS 840

Query: 841 GINNDKYKDVDSKSSNRTGTELLTTTV 868
           GINNDKYKDVDSKSSNRTGTELLTTT+
Sbjct: 841 GINNDKYKDVDSKSSNRTGTELLTTTI 866

[Close]

BLAST of Sed0019903 vs. NCBI nr
Match: XP_008437850.1 (PREDICTED: pentatricopeptide repeat-containing protein At1g74850, chloroplastic isoform X1 [Cucumis melo])

HSP 1 Score: 1604.0 bits (4152), Expect = 0.0e+00
Identity = 793/867 (91.46%), Postives = 825/867 (95.16%), Query Frame = 0


Query: 1   MALSPYLSVPNPFQPPTTFQKRYLEPHNLPLLIKPSNFTLRRRFLSDDRRLFSDAGKCRA 60
           MALSPY SV NPF+  +TFQKRYLE   LP L K SNF++RRRF SDD RL SD GK RA
Sbjct: 1   MALSPYFSVSNPFRTSSTFQKRYLECQQLPFLSKLSNFSVRRRFFSDDWRLSSDVGKARA 60

Query: 61  KPKDLVLGNPSVIVEKGKYSYDVETLINKLSSLPPRGSIARCLDIFKNRLSLNDFSLVFK 120
           K KDLVLGNPSVIVEKGKYSYDVETLINKLSSLPPRGSIARCLDIFKNRLSLNDFSLVFK
Sbjct: 61  KAKDLVLGNPSVIVEKGKYSYDVETLINKLSSLPPRGSIARCLDIFKNRLSLNDFSLVFK 120

Query: 121 EFAARGDWQRSLRLFKYMQRQIWCKPNEHIYTIMISLLGREGLLEKCSEVFDEMSSQGVV 180
           EFAARGDWQRSLRLFKYMQRQIWCKPNEHIYTI+ISLLGREGLLEKCSE+FDEM+SQGV+
Sbjct: 121 EFAARGDWQRSLRLFKYMQRQIWCKPNEHIYTIIISLLGREGLLEKCSEIFDEMASQGVI 180

Query: 181 RSVFSYTALINAYGRNGRYETSLELLERMKRDRVSPNILTYNTVINACARGDLDWEGLLG 240
           RSVFSYTALINAYGRNG+YETSLELLERMKR+RVSPNILTYNTVINACARGDLDWEGLLG
Sbjct: 181 RSVFSYTALINAYGRNGQYETSLELLERMKRERVSPNILTYNTVINACARGDLDWEGLLG 240

Query: 241 LFAEMRHEGVQPDLVTYNTLLSACAARGLGDEAEMVFKTMIEGGIVPEITTYSSVVETFG 300
           LFAEMRHEGVQPDLVTYNTLLSACAARGLGDEAEMVFKTMIEGGIVPEITTYS +VETFG
Sbjct: 241 LFAEMRHEGVQPDLVTYNTLLSACAARGLGDEAEMVFKTMIEGGIVPEITTYSYIVETFG 300

Query: 301 KLGKLEKVAILLKEMESEGYLPDISSYNVLIEAHAKSGSIKEAMDVFKQMQAAGCVPNAS 360
           KLGKLEKVA+LLKEMESEGYLPDISSYNVLIEAHAK GSIKEAMDVFKQMQAAGCVPNAS
Sbjct: 301 KLGKLEKVAMLLKEMESEGYLPDISSYNVLIEAHAKLGSIKEAMDVFKQMQAAGCVPNAS 360

Query: 361 TYSILLNLYGKHGRYNDVRELFLEMKESSAEPDATTYNILIRVFGEGGYFKEVVTLFHDL 420
           TYSILLNLYGKHGRY+DVRELFL+MKESSAEPDATTYNILIRVFGEGGYFKEVVTLFHDL
Sbjct: 361 TYSILLNLYGKHGRYDDVRELFLQMKESSAEPDATTYNILIRVFGEGGYFKEVVTLFHDL 420

Query: 421 VEEKIDPNMETYEGLVFACGKGGLHEDAKKIFLHMNEKGIVPSSNAYSGLIEAYGQAALY 480
           VEE IDPNMETYEGLVFACGKGGLHEDAKKI  HMNEKGIVPSS AY+GLIEAYGQAALY
Sbjct: 421 VEENIDPNMETYEGLVFACGKGGLHEDAKKILFHMNEKGIVPSSKAYTGLIEAYGQAALY 480

Query: 481 DEALVAFNTMNEIGSKSTVDTYNSLIHTFARGGLYKEFEATLLRMREFGISRNVKSFSGI 540
           DEA+VAFNTMNE+GSKST+DTYNSLIHTFARGGLYKEFEA L RMRE+GISRN KSFSGI
Sbjct: 481 DEAVVAFNTMNEVGSKSTIDTYNSLIHTFARGGLYKEFEAILSRMREYGISRNAKSFSGI 540

Query: 541 IDGYRQGGQFEEAIKSFVEMEKMRCEPDEQTLEAVLGVYCFAGLVDESKEQFQEIKASGI 600
           I+GYRQ GQ+EEAIK+FVEMEKMRCE DEQTLEAVLGVYCFAGLVDESKEQF EIKASGI
Sbjct: 541 IEGYRQSGQYEEAIKAFVEMEKMRCELDEQTLEAVLGVYCFAGLVDESKEQFVEIKASGI 600

Query: 601 LPSVLCYCMMLAVYAKNGRWDEAYELLDEMITNRVSSIHQVIGQMIKGDYDDESNWQMVE 660
           LPSVLCYCMMLAVYAKNGRWD+AYELLDEMI NRVSSIHQVIGQMIKGDYDD+SNWQMVE
Sbjct: 601 LPSVLCYCMMLAVYAKNGRWDDAYELLDEMIKNRVSSIHQVIGQMIKGDYDDDSNWQMVE 660

Query: 661 YVFDKLNAEGCGLGMRFYNTLLEALWWLGQKGRAARVLTEATKRGLFPELFRESKLVWSV 720
           YVFDKLNAEGCG GMRFYNTLLEALWWLGQKGRA RVLTEATKRGLFPELFR+SKLVWSV
Sbjct: 661 YVFDKLNAEGCGFGMRFYNTLLEALWWLGQKGRAGRVLTEATKRGLFPELFRQSKLVWSV 720

Query: 721 DVHRMWEGGAYTAISLWVNKMNEMLMDGENLPQLAAVVVGRGWLEKDSTAQNLPIAKAVY 780
           DVHRMWEGGAYTAISLWVNKMNEMLMDGE++PQLAAVVVGRGWLEKDSTA+NLPIA+AV 
Sbjct: 721 DVHRMWEGGAYTAISLWVNKMNEMLMDGEDIPQLAAVVVGRGWLEKDSTARNLPIARAVN 780

Query: 781 SFLQDNVSSSFSFPRWNNGRIVCQQSQLKQLLSNAEASSGEIIILKNSPLTFPEVKVSRS 840
           SFLQDNVSSSFSFP WNNGRIVCQQSQLKQLL+   ASS EII L NSPL  PE K+SRS
Sbjct: 781 SFLQDNVSSSFSFPGWNNGRIVCQQSQLKQLLT---ASSSEIIALNNSPLNLPEAKISRS 840

Query: 841 GINNDKYKDVDSKSSNRTGTELLTTTV 868
           GINNDKYKD+DSKSSNRTGTELLTTTV
Sbjct: 841 GINNDKYKDIDSKSSNRTGTELLTTTV 864

[Close]

BLAST of Sed0019903 vs. NCBI nr
Match: XP_008437858.1 (PREDICTED: pentatricopeptide repeat-containing protein At1g74850, chloroplastic isoform X2 [Cucumis melo])

HSP 1 Score: 1597.4 bits (4135), Expect = 0.0e+00
Identity = 792/867 (91.35%), Postives = 824/867 (95.04%), Query Frame = 0


Query: 1   MALSPYLSVPNPFQPPTTFQKRYLEPHNLPLLIKPSNFTLRRRFLSDDRRLFSDAGKCRA 60
           MALSPY SV NPF+  +TFQKRYLE   LP L K SNF++RRRF SDD RL SD GK RA
Sbjct: 1   MALSPYFSVSNPFRTSSTFQKRYLECQQLPFLSKLSNFSVRRRFFSDDWRLSSDVGKARA 60

Query: 61  KPKDLVLGNPSVIVEKGKYSYDVETLINKLSSLPPRGSIARCLDIFKNRLSLNDFSLVFK 120
           K KDLVLGNPSVIVEKGKYSYDVETLINKLSSLPPRGSIARCLDIFKNRLSLNDFSLVFK
Sbjct: 61  KAKDLVLGNPSVIVEKGKYSYDVETLINKLSSLPPRGSIARCLDIFKNRLSLNDFSLVFK 120

Query: 121 EFAARGDWQRSLRLFKYMQRQIWCKPNEHIYTIMISLLGREGLLEKCSEVFDEMSSQGVV 180
           EFAARGDWQRSLRLFKYMQRQIWCKPNEHIYTI+ISLLGREGLLEKCSE+FDEM+SQGV+
Sbjct: 121 EFAARGDWQRSLRLFKYMQRQIWCKPNEHIYTIIISLLGREGLLEKCSEIFDEMASQGVI 180

Query: 181 RSVFSYTALINAYGRNGRYETSLELLERMKRDRVSPNILTYNTVINACARGDLDWEGLLG 240
           RSVFSYTALINAYGRNG+YETSLELLERMKR+RVSPNILTYNTVINACARGDLDWEGLLG
Sbjct: 181 RSVFSYTALINAYGRNGQYETSLELLERMKRERVSPNILTYNTVINACARGDLDWEGLLG 240

Query: 241 LFAEMRHEGVQPDLVTYNTLLSACAARGLGDEAEMVFKTMIEGGIVPEITTYSSVVETFG 300
           LFAEMRHEGVQPDLVTYNTLLSACAARGLGDEAEMVFKTMIEGGIVPEITTYS +VETFG
Sbjct: 241 LFAEMRHEGVQPDLVTYNTLLSACAARGLGDEAEMVFKTMIEGGIVPEITTYSYIVETFG 300

Query: 301 KLGKLEKVAILLKEMESEGYLPDISSYNVLIEAHAKSGSIKEAMDVFKQMQAAGCVPNAS 360
           KLGKLEKVA+LLKEMESEGYLPDISSYNVLIEAHAK GSIKEAMDVFKQMQAAGCVPNAS
Sbjct: 301 KLGKLEKVAMLLKEMESEGYLPDISSYNVLIEAHAKLGSIKEAMDVFKQMQAAGCVPNAS 360

Query: 361 TYSILLNLYGKHGRYNDVRELFLEMKESSAEPDATTYNILIRVFGEGGYFKEVVTLFHDL 420
           TYSILLNLYGKHGRY+DVRELFL+MKESSAEPDATTYNILIRVFGEGGYFKEVVTLFHDL
Sbjct: 361 TYSILLNLYGKHGRYDDVRELFLQMKESSAEPDATTYNILIRVFGEGGYFKEVVTLFHDL 420

Query: 421 VEEKIDPNMETYEGLVFACGKGGLHEDAKKIFLHMNEKGIVPSSNAYSGLIEAYGQAALY 480
           VEE IDPNMETYEGLVFACGKGGLHEDAKKI  HMNEKGIVPSS AY+GLIEAYGQAALY
Sbjct: 421 VEENIDPNMETYEGLVFACGKGGLHEDAKKILFHMNEKGIVPSSKAYTGLIEAYGQAALY 480

Query: 481 DEALVAFNTMNEIGSKSTVDTYNSLIHTFARGGLYKEFEATLLRMREFGISRNVKSFSGI 540
           DEA+VAFNTMNE+GSKST+DTYNSLIHTFARGGLYKEFEA L RMRE+GISRN KSFSGI
Sbjct: 481 DEAVVAFNTMNEVGSKSTIDTYNSLIHTFARGGLYKEFEAILSRMREYGISRNAKSFSGI 540

Query: 541 IDGYRQGGQFEEAIKSFVEMEKMRCEPDEQTLEAVLGVYCFAGLVDESKEQFQEIKASGI 600
           I+GYRQ GQ+EEAIK+FVEMEKMRCE DEQTLEAVLGVYCFAGLVDESKEQF EIKASGI
Sbjct: 541 IEGYRQSGQYEEAIKAFVEMEKMRCELDEQTLEAVLGVYCFAGLVDESKEQFVEIKASGI 600

Query: 601 LPSVLCYCMMLAVYAKNGRWDEAYELLDEMITNRVSSIHQVIGQMIKGDYDDESNWQMVE 660
           LPSVLCYCMMLAVYAKNGRWD+AYELLDEMI NRVSSIHQVIGQMIKGDYDD+SNWQMVE
Sbjct: 601 LPSVLCYCMMLAVYAKNGRWDDAYELLDEMIKNRVSSIHQVIGQMIKGDYDDDSNWQMVE 660

Query: 661 YVFDKLNAEGCGLGMRFYNTLLEALWWLGQKGRAARVLTEATKRGLFPELFRESKLVWSV 720
           YVFDKLNAEGCG GMRFYNTLLEALWWLGQKGRA RVLTEATKRGLFPELFR+SKLVWSV
Sbjct: 661 YVFDKLNAEGCGFGMRFYNTLLEALWWLGQKGRAGRVLTEATKRGLFPELFRQSKLVWSV 720

Query: 721 DVHRMWEGGAYTAISLWVNKMNEMLMDGENLPQLAAVVVGRGWLEKDSTAQNLPIAKAVY 780
           DVHRMWEGGAYTAISLWVNKMNEMLMDGE++PQLAAVVVG GWLEKDSTA+NLPIA+AV 
Sbjct: 721 DVHRMWEGGAYTAISLWVNKMNEMLMDGEDIPQLAAVVVG-GWLEKDSTARNLPIARAVN 780

Query: 781 SFLQDNVSSSFSFPRWNNGRIVCQQSQLKQLLSNAEASSGEIIILKNSPLTFPEVKVSRS 840
           SFLQDNVSSSFSFP WNNGRIVCQQSQLKQLL+   ASS EII L NSPL  PE K+SRS
Sbjct: 781 SFLQDNVSSSFSFPGWNNGRIVCQQSQLKQLLT---ASSSEIIALNNSPLNLPEAKISRS 840

Query: 841 GINNDKYKDVDSKSSNRTGTELLTTTV 868
           GINNDKYKD+DSKSSNRTGTELLTTTV
Sbjct: 841 GINNDKYKDIDSKSSNRTGTELLTTTV 863

[Close]

BLAST of Sed0019903 vs. NCBI nr
Match: XP_022137367.1 (pentatricopeptide repeat-containing protein At1g74850, chloroplastic [Momordica charantia])

HSP 1 Score: 1596.3 bits (4132), Expect = 0.0e+00
Identity = 794/873 (90.95%), Postives = 825/873 (94.50%), Query Frame = 0


Query: 1   MALSPYLSVPNPFQPPTTFQKRYLEPHNLPLLIKPSNFTLRRRFLSDDRRLFSDAGKCRA 60
           MALSP+LS+PN F+  + FQKR+LE H  P L K S+F +RRRFLSDD    S+ GKCRA
Sbjct: 1   MALSPHLSLPNHFRTSSAFQKRFLESHQFPFLSKLSSFHVRRRFLSDDWSFSSNVGKCRA 60

Query: 61  KPKDLVLGNPSVIVEKGKYSYDVETLINKLSSLPPRGSIARCLDIFKNRLSLNDFSLVFK 120
           KPKDLVLGNPSVIVEKGKYSYDVETLINKLSSLPPRGSIARCLDIFKNRLSLNDFS VFK
Sbjct: 61  KPKDLVLGNPSVIVEKGKYSYDVETLINKLSSLPPRGSIARCLDIFKNRLSLNDFSFVFK 120

Query: 121 EFAARGDWQRSLRLFKYMQRQIWCKPNEHIYTIMISLLGREGLLEKCSEVFDEMSSQGVV 180
           EFAARGDWQRSLRLFKYMQRQIWCKPNEHIYTIMISLLGREGLLEKCSE+FDEM+SQGV+
Sbjct: 121 EFAARGDWQRSLRLFKYMQRQIWCKPNEHIYTIMISLLGREGLLEKCSEIFDEMASQGVI 180

Query: 181 RSVFSYTALINAYGRNGRYETSLELLERMKRDRVSPNILTYNTVINACARGDLDWEGLLG 240
           RSVFSYTALINAYGRNG+YETSLEL+ERMKR+RVSPNILTYNTVINACARGDLDWEGLLG
Sbjct: 181 RSVFSYTALINAYGRNGQYETSLELIERMKRERVSPNILTYNTVINACARGDLDWEGLLG 240

Query: 241 LFAEMRHEGVQPDLVTYNTLLSACAARGLGDEAEMVFKTMIEGGIVPEITTYSSVVETFG 300
           LFAEMRHEGVQPDLVTYNTLLSACAARGLGDEAEMVFKTMIEGGIVPEITTYS +VETFG
Sbjct: 241 LFAEMRHEGVQPDLVTYNTLLSACAARGLGDEAEMVFKTMIEGGIVPEITTYSYIVETFG 300

Query: 301 KLGKLEKVAILLKEMESEGYLPDISSYNVLIEAHAKSGSIKEAMDVFKQMQAAGCVPNAS 360
           KLGKLEKVA+LLKEMESEGYLPDISSYNVLIEAHAK GSIKEAMDVFKQMQAAGCVPNAS
Sbjct: 301 KLGKLEKVAMLLKEMESEGYLPDISSYNVLIEAHAKLGSIKEAMDVFKQMQAAGCVPNAS 360

Query: 361 TYSILLNLYGKHGRYNDVRELFLEMKESSAEPDATTYNILIRVFGEGGYFKEVVTLFHDL 420
           TYSILLNLYGKHGRY+DVRELFLEMKESSAEPDATTYNILIRVFGEGGYFKEVVTLFHDL
Sbjct: 361 TYSILLNLYGKHGRYDDVRELFLEMKESSAEPDATTYNILIRVFGEGGYFKEVVTLFHDL 420

Query: 421 VEEKIDPNMETYEGLVFACGKGGLHEDAKKIFLHMNEKGIVPSSNAYSGLIEAYGQAALY 480
           VEEKIDPNMETYEGLVFACGKGGLHEDAKKI LHMNEKGIVPSS AYSGLIEAYG AALY
Sbjct: 421 VEEKIDPNMETYEGLVFACGKGGLHEDAKKILLHMNEKGIVPSSKAYSGLIEAYGLAALY 480

Query: 481 DEALVAFNTMNEIGSKSTVDTYNSLIHTFARGGLYKEFEATLLRMREFGISRNVKSFSGI 540
           DEA+VAFNTMNE+GSKSTVDTYNSLIHTFARGGLYKEFEA LLRMRE GISRNVKSFSGI
Sbjct: 481 DEAVVAFNTMNEVGSKSTVDTYNSLIHTFARGGLYKEFEAILLRMRESGISRNVKSFSGI 540

Query: 541 IDGYRQGGQFEEAIKSFVEMEKMRCEPDEQTLEAVLGVYCFAGLVDESKEQFQEIKASGI 600
           I+GYRQ GQFEEAIK+FVEMEKMRCEPDEQTLEAVLGVYCFAGLVDESKEQF EIKA+GI
Sbjct: 541 IEGYRQSGQFEEAIKAFVEMEKMRCEPDEQTLEAVLGVYCFAGLVDESKEQFHEIKATGI 600

Query: 601 LPSVLCYCMMLAVYAKNGRWDEAYELLDEMITNRVSSIHQVIGQMIKGDYDDESNWQMVE 660
           LPSVLCYCMMLAVYAKNGRWD AYELLDEMITNRVSSIHQVIGQMIKGDYDD+SNWQMVE
Sbjct: 601 LPSVLCYCMMLAVYAKNGRWDNAYELLDEMITNRVSSIHQVIGQMIKGDYDDDSNWQMVE 660

Query: 661 YVFDKLNAEGCGLGMRFYNTLLEALWWLGQKGRAARVLTEATKRGLFPELFRESKLVWSV 720
           YVFDKLNAEGCGLG RFYNTLL+ALWWLGQKGRAARVL EATKRGLFPELFR+SKLVWSV
Sbjct: 661 YVFDKLNAEGCGLGTRFYNTLLDALWWLGQKGRAARVLIEATKRGLFPELFRKSKLVWSV 720

Query: 721 DVHRMWEGGAYTAISLWVNKMNEMLMDGENLPQLAAVVVGRGWLEKDSTAQNLPIAKAVY 780
           DVHRMWEGGAYTAISLWVN MN+M+ D E+LPQLAAVVVGRGWLEKDS AQNLPIAKAVY
Sbjct: 721 DVHRMWEGGAYTAISLWVNTMNKMIKDEEDLPQLAAVVVGRGWLEKDSKAQNLPIAKAVY 780

Query: 781 SFLQDNVSSSFSFPRWNNGRIVCQQSQLKQLLSNAEASS-----GEIIILKNSPLTFPE- 840
           SFLQDNVSSSF FPRWNN RIVCQQSQLKQLLS+AE+SS      EII L NSPL  P  
Sbjct: 781 SFLQDNVSSSFDFPRWNNCRIVCQQSQLKQLLSDAESSSKGPKTNEIITLNNSPLNLPAG 840

Query: 841 VKVSRSGINNDKYKDVDSKSSNRTGTELLTTTV 868
            K+SRSGINNDKYKDVDSKSSNRTGTELLTTTV
Sbjct: 841 SKISRSGINNDKYKDVDSKSSNRTGTELLTTTV 873

[Close]

BLAST of Sed0019903 vs. ExPASy Swiss-Prot
Match: Q9S7Q2 (Pentatricopeptide repeat-containing protein At1g74850, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PTAC2 PE=2 SV=1)

HSP 1 Score: 1237.2 bits (3200), Expect = 0.0e+00
Identity = 616/874 (70.48%), Postives = 724/874 (82.84%), Query Frame = 0


Query: 7   LSVPNPFQPPTTFQKRYLEPHNLPLLIKPSNFTLRRRFLSDDRRLF---------SDAGK 66
           L++PNP              H+L  LI+ S+F   RRF   +R  F         S +GK
Sbjct: 3   LAIPNP------------NSHHLSFLIQNSSFIGNRRFADGNRLRFLSGGNRKPCSFSGK 62

Query: 67  CRAKPKDLVLGNPSVIVEKGKYSYDVETLINKLSSLPPRGSIARCLDIFKNRLSLNDFSL 126
            +AK KDLVLGNPSV VEKGKYSYDVE+LINKLSSLPPRGSIARCLDIFKN+LSLNDF+L
Sbjct: 63  IKAKTKDLVLGNPSVSVEKGKYSYDVESLINKLSSLPPRGSIARCLDIFKNKLSLNDFAL 122

Query: 127 VFKEFAARGDWQRSLRLFKYMQRQIWCKPNEHIYTIMISLLGREGLLEKCSEVFDEMSSQ 186
           VFKEFA RGDWQRSLRLFKYMQRQIWCKPNEHIYTIMISLLGREGLL+KC EVFDEM SQ
Sbjct: 123 VFKEFAGRGDWQRSLRLFKYMQRQIWCKPNEHIYTIMISLLGREGLLDKCLEVFDEMPSQ 182

Query: 187 GVVRSVFSYTALINAYGRNGRYETSLELLERMKRDRVSPNILTYNTVINACARGDLDWEG 246
           GV RSVFSYTALINAYGRNGRYETSLELL+RMK +++SP+ILTYNTVINACARG LDWEG
Sbjct: 183 GVSRSVFSYTALINAYGRNGRYETSLELLDRMKNEKISPSILTYNTVINACARGGLDWEG 242

Query: 247 LLGLFAEMRHEGVQPDLVTYNTLLSACAARGLGDEAEMVFKTMIEGGIVPEITTYSSVVE 306
           LLGLFAEMRHEG+QPD+VTYNTLLSACA RGLGDEAEMVF+TM +GGIVP++TTYS +VE
Sbjct: 243 LLGLFAEMRHEGIQPDIVTYNTLLSACAIRGLGDEAEMVFRTMNDGGIVPDLTTYSHLVE 302

Query: 307 TFGKLGKLEKVAILLKEMESEGYLPDISSYNVLIEAHAKSGSIKEAMDVFKQMQAAGCVP 366
           TFGKL +LEKV  LL EM S G LPDI+SYNVL+EA+AKSGSIKEAM VF QMQAAGC P
Sbjct: 303 TFGKLRRLEKVCDLLGEMASGGSLPDITSYNVLLEAYAKSGSIKEAMGVFHQMQAAGCTP 362

Query: 367 NASTYSILLNLYGKHGRYNDVRELFLEMKESSAEPDATTYNILIRVFGEGGYFKEVVTLF 426
           NA+TYS+LLNL+G+ GRY+DVR+LFLEMK S+ +PDA TYNILI VFGEGGYFKEVVTLF
Sbjct: 363 NANTYSVLLNLFGQSGRYDDVRQLFLEMKSSNTDPDAATYNILIEVFGEGGYFKEVVTLF 422

Query: 427 HDLVEEKIDPNMETYEGLVFACGKGGLHEDAKKIFLHMNEKGIVPSSNAYSGLIEAYGQA 486
           HD+VEE I+P+METYEG++FACGKGGLHEDA+KI  +M    IVPSS AY+G+IEA+GQA
Sbjct: 423 HDMVEENIEPDMETYEGIIFACGKGGLHEDARKILQYMTANDIVPSSKAYTGVIEAFGQA 482

Query: 487 ALYDEALVAFNTMNEIGSKSTVDTYNSLIHTFARGGLYKEFEATLLRMREFGISRNVKSF 546
           ALY+EALVAFNTM+E+GS  +++T++SL+++FARGGL KE EA L R+ + GI RN  +F
Sbjct: 483 ALYEEALVAFNTMHEVGSNPSIETFHSLLYSFARGGLVKESEAILSRLVDSGIPRNRDTF 542

Query: 547 SGIIDGYRQGGQFEEAIKSFVEMEKMRCEPDEQTLEAVLGVYCFAGLVDESKEQFQEIKA 606
           +  I+ Y+QGG+FEEA+K++V+MEK RC+PDE+TLEAVL VY FA LVDE +EQF+E+KA
Sbjct: 543 NAQIEAYKQGGKFEEAVKTYVDMEKSRCDPDERTLEAVLSVYSFARLVDECREQFEEMKA 602

Query: 607 SGILPSVLCYCMMLAVYAKNGRWDEAYELLDEMITNRVSSIHQVIGQMIKGDYDDESNWQ 666
           S ILPS++CYCMMLAVY K  RWD+  ELL+EM++NRVS+IHQVIGQMIKGDYDD+SNWQ
Sbjct: 603 SDILPSIMCYCMMLAVYGKTERWDDVNELLEEMLSNRVSNIHQVIGQMIKGDYDDDSNWQ 662

Query: 667 MVEYVFDKLNAEGCGLGMRFYNTLLEALWWLGQKGRAARVLTEATKRGLFPELFRESKLV 726
           +VEYV DKLN+EGCGLG+RFYN LL+ALWWLGQK RAARVL EATKRGLFPELFR++KLV
Sbjct: 663 IVEYVLDKLNSEGCGLGIRFYNALLDALWWLGQKERAARVLNEATKRGLFPELFRKNKLV 722

Query: 727 WSVDVHRMWEGGAYTAISLWVNKMNEMLMDGENLPQLAAVVVGRGWLEKDSTAQNLPIAK 786
           WSVDVHRM EGG YTA+S+W+N +N+ML+ G+ LPQLA VV  RG LEK S A+  PIAK
Sbjct: 723 WSVDVHRMSEGGMYTALSVWLNDINDMLLKGD-LPQLAVVVSVRGQLEKSSAARESPIAK 782

Query: 787 AVYSFLQDNVSSSFSFPRWNNGRIVCQQSQLKQLLSNAEASSGE-----IIILKNSPLTF 846
           A +SFLQD+VSSSFSF  WN GRI+CQ+SQLKQLLS  E +S E     ++ L NSP+  
Sbjct: 783 AAFSFLQDHVSSSFSFTGWNGGRIMCQRSQLKQLLSTKEPTSEESENKNLVALANSPIFA 842

Query: 847 PEVKVSRSGINNDKYKDVDSKSSNRTGTELLTTT 867
              + S S   N  +    ++   RT  EL  +T
Sbjct: 843 AGTRASTSSDTN--HSGNPTQRRTRTKKELAGST 861

[Close]

BLAST of Sed0019903 vs. ExPASy Swiss-Prot
Match: Q9SIC9 (Pentatricopeptide repeat-containing protein At2g31400, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=At2g31400 PE=2 SV=1)

HSP 1 Score: 300.4 bits (768), Expect = 6.4e-80
Identity = 191/722 (26.45%), Postives = 361/722 (50.00%), Query Frame = 0


Query: 113 NDFSLVFKEFAARGDWQRSLRLFKY-MQRQIWCKPNEHIYTIMISLLGREGLLEKCSEVF 172
           +D + + +E   R +  +++  +++ ++R+        + + MIS LGR G +     +F
Sbjct: 197 DDCTYIIRELGNRNECDKAVGFYEFAVKRERRKNEQGKLASAMISTLGRYGKVTIAKRIF 256

Query: 173 DEMSSQGVVRSVFSYTALINAYGRNGRYETSLELLERMKRDRVSPNILTYNTVINACARG 232
           +   + G   +V++++ALI+AYGR+G +E ++ +   MK   + PN++TYN VI+AC +G
Sbjct: 257 ETAFAGGYGNTVYAFSALISAYGRSGLHEEAISVFNSMKEYGLRPNLVTYNAVIDACGKG 316

Query: 233 DLDWEGLLGLFAEMRHEGVQPDLVTYNTLLSACAARGLGDEAEMVFKTMIEGGIVPEITT 292
            ++++ +   F EM+  GVQPD +T+N+LL+ C+  GL + A  +F  M    I  ++ +
Sbjct: 317 GMEFKQVAKFFDEMQRNGVQPDRITFNSLLAVCSRGGLWEAARNLFDEMTNRRIEQDVFS 376

Query: 293 YSSVVETFGKLGKLEKVAILLKEMESEGYLPDISSYNVLIEAHAKSGSIKEAMDVFKQMQ 352
           Y+++++   K G+++    +L +M  +  +P++ SY+ +I+  AK+G   EA+++F +M+
Sbjct: 377 YNTLLDAICKGGQMDLAFEILAQMPVKRIMPNVVSYSTVIDGFAKAGRFDEALNLFGEMR 436

Query: 353 AAGCVPNASTYSILLNLYGKHGRYNDVRELFLEMKESSAEPDATTYNILIRVFGEGGYFK 412
             G   +  +Y+ LL++Y K GR  +  ++  EM     + D  TYN L+  +G+ G + 
Sbjct: 437 YLGIALDRVSYNTLLSIYTKVGRSEEALDILREMASVGIKKDVVTYNALLGGYGKQGKYD 496

Query: 413 EVVTLFHDLVEEKIDPNMETYEGLVFACGKGGLHEDAKKIFLHMNEKGIVPSSNAYSGLI 472
           EV  +F ++  E + PN+ TY  L+    KGGL+++A +IF      G+      YS LI
Sbjct: 497 EVKKVFTEMKREHVLPNLLTYSTLIDGYSKGGLYKEAMEIFREFKSAGLRADVVLYSALI 556

Query: 473 EAYGQAALYDEALVAFNTMNEIGSKSTVDTYNSLIHTFARGGLYKEFEATLLRMREFGIS 532
           +A  +  L   A+   + M + G    V TYNS+I  F R        AT+ R  ++   
Sbjct: 557 DALCKNGLVGSAVSLIDEMTKEGISPNVVTYNSIIDAFGR-------SATMDRSADYSNG 616

Query: 533 RNVKSFSGII------DGYRQGGQFEEAIKSFVEMEKMRCEPDEQTLEAVLGVYCFAGLV 592
            ++   S  +      +G R    F +            CE   Q L  +L         
Sbjct: 617 GSLPFSSSALSALTETEGNRVIQLFGQLTTESNNRTTKDCEEGMQELSCIL--------- 676

Query: 593 DESKEQFQEIKASGILPSVLCYCMMLAVYAKNGRWDEAYELLDE--MITNRVSSIHQVIG 652
               E F+++    I P+V+ +  +L   ++   +++A  LL+E  +  N+V   + V+ 
Sbjct: 677 ----EVFRKMHQLEIKPNVVTFSAILNACSRCNSFEDASMLLEELRLFDNKV---YGVVH 736

Query: 653 QMIKGDYDDESNWQMVEYVFDKLNAEGCGLGMRFYNTLLEALWWLGQKGRAARVLTEATK 712
            ++ G    E+ W   + +FDK+N         FYN L + LW  GQK  A  V  E   
Sbjct: 737 GLLMG--QRENVWLQAQSLFDKVNEMDGSTASAFYNALTDMLWHFGQKRGAELVALEGRS 796

Query: 713 RGLFPELFRESKLVWSVDVHRMWEGGAYTAISLWVNKMNEMLMDGENLPQLAAVVVGRGW 772
           R ++  ++ +S L    D+H M  G A   +  W+  +  ++ +G  LP++ +++   GW
Sbjct: 797 RQVWENVWSDSCL----DLHLMSSGAARAMVHAWLLNIRSIVYEGHELPKVLSILT--GW 856

Query: 773 LEKDSTAQNLPIAKAVYSFLQDNVSSSFSFPRWNNGRIVCQQSQLKQLLSNAEASSGEII 826
            +      +  + +AV   L+  + + F   + N GR     S +   L   E+++ +++
Sbjct: 857 GKHSKVVGDGALRRAVEVLLR-GMDAPFHLSKCNMGRFTSSGSVVATWL--RESATLKLL 884

[Close]

BLAST of Sed0019903 vs. ExPASy Swiss-Prot
Match: O64624 (Pentatricopeptide repeat-containing protein At2g18940, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=At2g18940 PE=2 SV=1)

HSP 1 Score: 298.9 bits (764), Expect = 1.9e-79
Identity = 175/635 (27.56%), Postives = 312/635 (49.13%), Query Frame = 0


Query: 86  LINKLSSLPPRGSIARCLDIFKNRLSLNDFSLVFKEFAARGDWQRSLRLFKYM---QRQI 145
           L+N +   P  G ++R  D  K+ L   D   + K     G W+R++ LF+++       
Sbjct: 111 LVNSIVEQPLTG-LSRFFDSVKSELLRTDLVSLVKGLDDSGHWERAVFLFEWLVLSSNSG 170

Query: 146 WCKPNEHIYTIMISLLGREGLLEKCSEVFDEMSSQGVVRSVFSYTALINAYGRNGRYETS 205
             K +  +  I + +LGRE      +++ D++  Q  +  V +YT +++AY R G+YE +
Sbjct: 171 ALKLDHQVIEIFVRILGRESQYSVAAKLLDKIPLQEYLLDVRAYTTILHAYSRTGKYEKA 230

Query: 206 LELLERMKRDRVSPNILTYNTVINACARGDLDWEGLLGLFAEMRHEGVQPDLVTYNTLLS 265
           ++L ERMK    SP ++TYN +++   +    W  +LG+  EMR +G++ D  T +T+LS
Sbjct: 231 IDLFERMKEMGPSPTLVTYNVILDVFGKMGRSWRKILGVLDEMRSKGLKFDEFTCSTVLS 290

Query: 266 ACAARGLGDEAEMVFKTMIEGGIVPEITTYSSVVETFGKLGKLEKVAILLKEMESEGYLP 325
           ACA  GL  EA+  F  +   G  P   TY+++++ FGK G   +   +LKEME      
Sbjct: 291 ACAREGLLREAKEFFAELKSCGYEPGTVTYNALLQVFGKAGVYTEALSVLKEMEENSCPA 350

Query: 326 DISSYNVLIEAHAKSGSIKEAMDVFKQMQAAGCVPNASTYSILLNLYGKHGRYNDVRELF 385
           D  +YN L+ A+ ++G  KEA  V + M   G +PNA TY+ +++ YGK G+ ++  +LF
Sbjct: 351 DSVTYNELVAAYVRAGFSKEAAGVIEMMTKKGVMPNAITYTTVIDAYGKAGKEDEALKLF 410

Query: 386 LEMKESSAEPDATTYNILIRVFGEGGYFKEVVTLFHDLVEEKIDPNMETYEGLVFACGKG 445
             MKE+   P+  TYN ++ + G+     E++ +  D+      PN  T+  ++  CG  
Sbjct: 411 YSMKEAGCVPNTCTYNAVLSLLGKKSRSNEMIKMLCDMKSNGCSPNRATWNTMLALCGNK 470

Query: 446 GLHEDAKKIFLHMNEKGIVPSSNAYSGLIEAYGQAALYDEALVAFNTMNEIGSKSTVDTY 505
           G+ +   ++F  M   G  P  + ++ LI AYG+     +A   +  M   G  + V TY
Sbjct: 471 GMDKFVNRVFREMKSCGFEPDRDTFNTLISAYGRCGSEVDASKMYGEMTRAGFNACVTTY 530

Query: 506 NSLIHTFARGGLYKEFEATLLRMREFGISRNVKSFSGIIDGYRQGGQFEEAIKSFVEMEK 565
           N+L++  AR G ++  E  +  M+  G      S+S ++  Y +GG +    +    +++
Sbjct: 531 NALLNALARKGDWRSGENVISDMKSKGFKPTETSYSLMLQCYAKGGNYLGIERIENRIKE 590

Query: 566 MRCEPDEQTLEAVLGVYCFAGLVDESKEQFQEIKASGILPSVLCYCMMLAVYAKNGRWDE 625
            +  P    L  +L        +  S+  F   K  G  P ++ +  ML+++ +N  +D+
Sbjct: 591 GQIFPSWMLLRTLLLANFKCRALAGSERAFTLFKKHGYKPDMVIFNSMLSIFTRNNMYDQ 650

Query: 626 AYELLDEMITNRVSSIHQVIGQMIKGDYDDESNWQMVEYVFDKLNAEGCGLGMRFYNTLL 685
           A  +L+ +  + +S    V    +   Y         E +   L        +  YNT++
Sbjct: 651 AEGILESIREDGLSP-DLVTYNSLMDMYVRRGECWKAEEILKTLEKSQLKPDLVSYNTVI 710

Query: 686 EALWWLGQKGRAARVLTEATKRGLFPELFRESKLV 718
           +     G    A R+L+E T+RG+ P +F  +  V
Sbjct: 711 KGFCRRGLMQEAVRMLSEMTERGIRPCIFTYNTFV 743

[Close]

BLAST of Sed0019903 vs. ExPASy Swiss-Prot
Match: Q9LYZ9 (Pentatricopeptide repeat-containing protein At5g02860 OS=Arabidopsis thaliana OX=3702 GN=At5g02860 PE=2 SV=1)

HSP 1 Score: 287.3 bits (734), Expect = 5.6e-76
Identity = 154/599 (25.71%), Postives = 299/599 (49.92%), Query Frame = 0


Query: 131 SLRLFKYM--QRQIWCKPNEHIYTIMISLLGREGLLEKCSEVFDEMSSQGVVRSVFSYTA 190
           +LR F +   Q+      +  +  I+IS+LG+EG +   + +F+ +   G    V+SYT+
Sbjct: 154 ALRAFDWFMKQKDYQSMLDNSVVAIIISMLGKEGRVSSAANMFNGLQEDGFSLDVYSYTS 213

Query: 191 LINAYGRNGRYETSLELLERMKRDRVSPNILTYNTVINACARGDLDWEGLLGLFAEMRHE 250
           LI+A+  +GRY  ++ + ++M+ D   P ++TYN ++N   +    W  +  L  +M+ +
Sbjct: 214 LISAFANSGRYREAVNVFKKMEEDGCKPTLITYNVILNVFGKMGTPWNKITSLVEKMKSD 273

Query: 251 GVQPDLVTYNTLLSACAARGLGDEAEMVFKTMIEGGIVPEITTYSSVVETFGKLGKLEKV 310
           G+ PD  TYNTL++ C    L  EA  VF+ M   G   +  TY+++++ +GK  + ++ 
Sbjct: 274 GIAPDAYTYNTLITCCKRGSLHQEAAQVFEEMKAAGFSYDKVTYNALLDVYGKSHRPKEA 333

Query: 311 AILLKEMESEGYLPDISSYNVLIEAHAKSGSIKEAMDVFKQMQAAGCVPNASTYSILLNL 370
             +L EM   G+ P I +YN LI A+A+ G + EAM++  QM   G  P+  TY+ LL+ 
Sbjct: 334 MKVLNEMVLNGFSPSIVTYNSLISAYARDGMLDEAMELKNQMAEKGTKPDVFTYTTLLSG 393

Query: 371 YGKHGRYNDVRELFLEMKESSAEPDATTYNILIRVFGEGGYFKEVVTLFHDLVEEKIDPN 430
           + + G+      +F EM+ +  +P+  T+N  I+++G  G F E++ +F ++    + P+
Sbjct: 394 FERAGKVESAMSIFEEMRNAGCKPNICTFNAFIKMYGNRGKFTEMMKIFDEINVCGLSPD 453

Query: 431 METYEGLVFACGKGGLHEDAKKIFLHMNEKGIVPSSNAYSGLIEAYGQAALYDEALVAFN 490
           + T+  L+   G+ G+  +   +F  M   G VP    ++ LI AY +   +++A+  + 
Sbjct: 454 IVTWNTLLAVFGQNGMDSEVSGVFKEMKRAGFVPERETFNTLISAYSRCGSFEQAMTVYR 513

Query: 491 TMNEIGSKSTVDTYNSLIHTFARGGLYKEFEATLLRMREFGISRNVKSFSGIIDGYRQGG 550
            M + G    + TYN+++   ARGG++++ E  L  M +     N  ++  ++  Y  G 
Sbjct: 514 RMLDAGVTPDLSTYNTVLAALARGGMWEQSEKVLAEMEDGRCKPNELTYCSLLHAYANGK 573

Query: 551 QFEEAIKSFVEMEKMRCEPDEQTLEAVLGVYCFAGLVDESKEQFQEIKASGILPSVLCYC 610
           +         E+     EP    L+ ++ V     L+ E++  F E+K  G  P +    
Sbjct: 574 EIGLMHSLAEEVYSGVIEPRAVLLKTLVLVCSKCDLLPEAERAFSELKERGFSPDITTLN 633

Query: 611 MMLAVYAKNGRWDEAYELLDEMITNRVSSIHQVIGQMIKGDYDDESNWQMVEYVFDKLNA 670
            M+++Y +     +A  +LD M   R  +        +   +   +++   E +  ++ A
Sbjct: 634 SMVSIYGRRQMVAKANGVLDYM-KERGFTPSMATYNSLMYMHSRSADFGKSEEILREILA 693

Query: 671 EGCGLGMRFYNTLLEALWWLGQKGRAARVLTEATKRGLFPELFRESKLVWSVDVHRMWE 728
           +G    +  YNT++ A     +   A+R+ +E    G+ P++   +  + S     M+E
Sbjct: 694 KGIKPDIISYNTVIYAYCRNTRMRDASRIFSEMRNSGIVPDVITYNTFIGSYAADSMFE 751

[Close]

BLAST of Sed0019903 vs. ExPASy Swiss-Prot
Match: B8Y6I0 (Pentatricopeptide repeat-containing protein 10, chloroplastic OS=Zea mays OX=4577 GN=PPR10 PE=1 SV=1)

HSP 1 Score: 283.5 bits (724), Expect = 8.1e-75
Identity = 179/636 (28.14%), Postives = 311/636 (48.90%), Query Frame = 0


Query: 80  SYDVETLINKLSSLPPRGSIARCLDIFKNRLSLNDFSLVFKEFAARGDWQRSLRLFKYMQ 139
           S D + L+  +SS  P  ++A  L   ++ L   D + + K     G W+ +L L ++  
Sbjct: 73  SPDAQVLVLAISS-HPLPTLAAFLASRRDELLRADITSLLKALELSGHWEWALALLRWAG 132

Query: 140 RQIWCKPNEHIYTIMISLLGREGLLEKCSEVFDEMS-SQGVVRSVFSYTALINAYGRNGR 199
           ++     +     +++  LGREG  +    + DE     G    V +YT +++A  R GR
Sbjct: 133 KE--GAADASALEMVVRALGREGQHDAVCALLDETPLPPGSRLDVRAYTTVLHALSRAGR 192

Query: 200 YETSLELLERMKRDRVSPNILTYNTVINACARGDLDWEGLLGLFAEMRHEGVQPDLVTYN 259
           YE +LEL   ++R  V+P ++TYN V++   R    W  ++ L  EMR  GV+PD  T +
Sbjct: 193 YERALELFAELRRQGVAPTLVTYNVVLDVYGRMGRSWPRIVALLDEMRAAGVEPDGFTAS 252

Query: 260 TLLSACAARGLGDEAEMVFKTMIEGGIVPEITTYSSVVETFGKLGKLEKVAILLKEMESE 319
           T+++AC   GL DEA   F+ +   G  P + TY+++++ FGK G   +   +L EME  
Sbjct: 253 TVIAACCRDGLVDEAVAFFEDLKARGHAPCVVTYNALLQVFGKAGNYTEALRVLGEMEQN 312

Query: 320 GYLPDISSYNVLIEAHAKSGSIKEAMDVFKQMQAAGCVPNASTYSILLNLYGKHGRYNDV 379
           G  PD  +YN L   +A++G  +EA      M + G +PNA TY+ ++  YG  G+ ++ 
Sbjct: 313 GCQPDAVTYNELAGTYARAGFFEEAARCLDTMASKGLLPNAFTYNTVMTAYGNVGKVDEA 372

Query: 380 RELFLEMKESSAEPDATTYNILIRVFGEGGYFKEVVTLFHDLVEEKIDPNMETYEGLVFA 439
             LF +MK++   P+  TYN+++ + G+   F  ++ +  ++      PN  T+  ++  
Sbjct: 373 LALFDQMKKTGFVPNVNTYNLVLGMLGKKSRFTVMLEMLGEMSRSGCTPNRVTWNTMLAV 432

Query: 440 CGKGGLHEDAKKIFLHMNEKGIVPSSNAYSGLIEAYGQAALYDEALVAFNTMNEIGSKST 499
           CGK G+ +   ++   M   G+  S + Y+ LI AYG+      A   +N M   G    
Sbjct: 433 CGKRGMEDYVTRVLEGMRSCGVELSRDTYNTLIAAYGRCGSRTNAFKMYNEMTSAGFTPC 492

Query: 500 VDTYNSLIHTFARGGLYKEFEATLLRMREFGISRNVKSFSGIIDGYRQGGQFE--EAIKS 559
           + TYN+L++  +R G +   ++ + +MR  G   N +S+S ++  Y +GG      AI++
Sbjct: 493 ITTYNALLNVLSRQGDWSTAQSIVSKMRTKGFKPNEQSYSLLLQCYAKGGNVAGIAAIEN 552

Query: 560 FVEMEKMRCEPDEQTLEAVLGVYCFAGLVDESKEQFQEIKASGILPSVLCYCMMLAVYAK 619
            V        P    L  ++        +D  +  FQE+KA G  P ++ +  ML++YAK
Sbjct: 553 EV-YGSGAVFPSWVILRTLVIANFKCRRLDGMETAFQEVKARGYNPDLVIFNSMLSIYAK 612

Query: 620 NGRWDEAYELLDEMITNRVSSIHQVIGQMIKGDYDDESNWQMVEYVFDKLNAEGCGLGMR 679
           NG + +A E+ D +  + +S        ++        +W+  +     LN   C   M+
Sbjct: 613 NGMYSKATEVFDSIKRSGLSPDLITYNSLMDMYAKCSESWEAEKI----LNQLKCSQTMK 672

Query: 680 ----FYNTLLEALWWLGQKGRAARVLTEATKRGLFP 709
                YNT++      G    A RVL+E    G+ P
Sbjct: 673 PDVVSYNTVINGFCKQGLVKEAQRVLSEMVADGMAP 700

[Close]

BLAST of Sed0019903 vs. ExPASy TrEMBL
Match: A0A1S3AUM4 (pentatricopeptide repeat-containing protein At1g74850, chloroplastic isoform X1 OS=Cucumis melo OX=3656 GN=LOC103483154 PE=3 SV=1)

HSP 1 Score: 1604.0 bits (4152), Expect = 0.0e+00
Identity = 793/867 (91.46%), Postives = 825/867 (95.16%), Query Frame = 0


Query: 1   MALSPYLSVPNPFQPPTTFQKRYLEPHNLPLLIKPSNFTLRRRFLSDDRRLFSDAGKCRA 60
           MALSPY SV NPF+  +TFQKRYLE   LP L K SNF++RRRF SDD RL SD GK RA
Sbjct: 1   MALSPYFSVSNPFRTSSTFQKRYLECQQLPFLSKLSNFSVRRRFFSDDWRLSSDVGKARA 60

Query: 61  KPKDLVLGNPSVIVEKGKYSYDVETLINKLSSLPPRGSIARCLDIFKNRLSLNDFSLVFK 120
           K KDLVLGNPSVIVEKGKYSYDVETLINKLSSLPPRGSIARCLDIFKNRLSLNDFSLVFK
Sbjct: 61  KAKDLVLGNPSVIVEKGKYSYDVETLINKLSSLPPRGSIARCLDIFKNRLSLNDFSLVFK 120

Query: 121 EFAARGDWQRSLRLFKYMQRQIWCKPNEHIYTIMISLLGREGLLEKCSEVFDEMSSQGVV 180
           EFAARGDWQRSLRLFKYMQRQIWCKPNEHIYTI+ISLLGREGLLEKCSE+FDEM+SQGV+
Sbjct: 121 EFAARGDWQRSLRLFKYMQRQIWCKPNEHIYTIIISLLGREGLLEKCSEIFDEMASQGVI 180

Query: 181 RSVFSYTALINAYGRNGRYETSLELLERMKRDRVSPNILTYNTVINACARGDLDWEGLLG 240
           RSVFSYTALINAYGRNG+YETSLELLERMKR+RVSPNILTYNTVINACARGDLDWEGLLG
Sbjct: 181 RSVFSYTALINAYGRNGQYETSLELLERMKRERVSPNILTYNTVINACARGDLDWEGLLG 240

Query: 241 LFAEMRHEGVQPDLVTYNTLLSACAARGLGDEAEMVFKTMIEGGIVPEITTYSSVVETFG 300
           LFAEMRHEGVQPDLVTYNTLLSACAARGLGDEAEMVFKTMIEGGIVPEITTYS +VETFG
Sbjct: 241 LFAEMRHEGVQPDLVTYNTLLSACAARGLGDEAEMVFKTMIEGGIVPEITTYSYIVETFG 300

Query: 301 KLGKLEKVAILLKEMESEGYLPDISSYNVLIEAHAKSGSIKEAMDVFKQMQAAGCVPNAS 360
           KLGKLEKVA+LLKEMESEGYLPDISSYNVLIEAHAK GSIKEAMDVFKQMQAAGCVPNAS
Sbjct: 301 KLGKLEKVAMLLKEMESEGYLPDISSYNVLIEAHAKLGSIKEAMDVFKQMQAAGCVPNAS 360

Query: 361 TYSILLNLYGKHGRYNDVRELFLEMKESSAEPDATTYNILIRVFGEGGYFKEVVTLFHDL 420
           TYSILLNLYGKHGRY+DVRELFL+MKESSAEPDATTYNILIRVFGEGGYFKEVVTLFHDL
Sbjct: 361 TYSILLNLYGKHGRYDDVRELFLQMKESSAEPDATTYNILIRVFGEGGYFKEVVTLFHDL 420

Query: 421 VEEKIDPNMETYEGLVFACGKGGLHEDAKKIFLHMNEKGIVPSSNAYSGLIEAYGQAALY 480
           VEE IDPNMETYEGLVFACGKGGLHEDAKKI  HMNEKGIVPSS AY+GLIEAYGQAALY
Sbjct: 421 VEENIDPNMETYEGLVFACGKGGLHEDAKKILFHMNEKGIVPSSKAYTGLIEAYGQAALY 480

Query: 481 DEALVAFNTMNEIGSKSTVDTYNSLIHTFARGGLYKEFEATLLRMREFGISRNVKSFSGI 540
           DEA+VAFNTMNE+GSKST+DTYNSLIHTFARGGLYKEFEA L RMRE+GISRN KSFSGI
Sbjct: 481 DEAVVAFNTMNEVGSKSTIDTYNSLIHTFARGGLYKEFEAILSRMREYGISRNAKSFSGI 540

Query: 541 IDGYRQGGQFEEAIKSFVEMEKMRCEPDEQTLEAVLGVYCFAGLVDESKEQFQEIKASGI 600
           I+GYRQ GQ+EEAIK+FVEMEKMRCE DEQTLEAVLGVYCFAGLVDESKEQF EIKASGI
Sbjct: 541 IEGYRQSGQYEEAIKAFVEMEKMRCELDEQTLEAVLGVYCFAGLVDESKEQFVEIKASGI 600

Query: 601 LPSVLCYCMMLAVYAKNGRWDEAYELLDEMITNRVSSIHQVIGQMIKGDYDDESNWQMVE 660
           LPSVLCYCMMLAVYAKNGRWD+AYELLDEMI NRVSSIHQVIGQMIKGDYDD+SNWQMVE
Sbjct: 601 LPSVLCYCMMLAVYAKNGRWDDAYELLDEMIKNRVSSIHQVIGQMIKGDYDDDSNWQMVE 660

Query: 661 YVFDKLNAEGCGLGMRFYNTLLEALWWLGQKGRAARVLTEATKRGLFPELFRESKLVWSV 720
           YVFDKLNAEGCG GMRFYNTLLEALWWLGQKGRA RVLTEATKRGLFPELFR+SKLVWSV
Sbjct: 661 YVFDKLNAEGCGFGMRFYNTLLEALWWLGQKGRAGRVLTEATKRGLFPELFRQSKLVWSV 720

Query: 721 DVHRMWEGGAYTAISLWVNKMNEMLMDGENLPQLAAVVVGRGWLEKDSTAQNLPIAKAVY 780
           DVHRMWEGGAYTAISLWVNKMNEMLMDGE++PQLAAVVVGRGWLEKDSTA+NLPIA+AV 
Sbjct: 721 DVHRMWEGGAYTAISLWVNKMNEMLMDGEDIPQLAAVVVGRGWLEKDSTARNLPIARAVN 780

Query: 781 SFLQDNVSSSFSFPRWNNGRIVCQQSQLKQLLSNAEASSGEIIILKNSPLTFPEVKVSRS 840
           SFLQDNVSSSFSFP WNNGRIVCQQSQLKQLL+   ASS EII L NSPL  PE K+SRS
Sbjct: 781 SFLQDNVSSSFSFPGWNNGRIVCQQSQLKQLLT---ASSSEIIALNNSPLNLPEAKISRS 840

Query: 841 GINNDKYKDVDSKSSNRTGTELLTTTV 868
           GINNDKYKD+DSKSSNRTGTELLTTTV
Sbjct: 841 GINNDKYKDIDSKSSNRTGTELLTTTV 864

[Close]

BLAST of Sed0019903 vs. ExPASy TrEMBL
Match: A0A1S3AVM1 (pentatricopeptide repeat-containing protein At1g74850, chloroplastic isoform X2 OS=Cucumis melo OX=3656 GN=LOC103483154 PE=3 SV=1)

HSP 1 Score: 1597.4 bits (4135), Expect = 0.0e+00
Identity = 792/867 (91.35%), Postives = 824/867 (95.04%), Query Frame = 0


Query: 1   MALSPYLSVPNPFQPPTTFQKRYLEPHNLPLLIKPSNFTLRRRFLSDDRRLFSDAGKCRA 60
           MALSPY SV NPF+  +TFQKRYLE   LP L K SNF++RRRF SDD RL SD GK RA
Sbjct: 1   MALSPYFSVSNPFRTSSTFQKRYLECQQLPFLSKLSNFSVRRRFFSDDWRLSSDVGKARA 60

Query: 61  KPKDLVLGNPSVIVEKGKYSYDVETLINKLSSLPPRGSIARCLDIFKNRLSLNDFSLVFK 120
           K KDLVLGNPSVIVEKGKYSYDVETLINKLSSLPPRGSIARCLDIFKNRLSLNDFSLVFK
Sbjct: 61  KAKDLVLGNPSVIVEKGKYSYDVETLINKLSSLPPRGSIARCLDIFKNRLSLNDFSLVFK 120

Query: 121 EFAARGDWQRSLRLFKYMQRQIWCKPNEHIYTIMISLLGREGLLEKCSEVFDEMSSQGVV 180
           EFAARGDWQRSLRLFKYMQRQIWCKPNEHIYTI+ISLLGREGLLEKCSE+FDEM+SQGV+
Sbjct: 121 EFAARGDWQRSLRLFKYMQRQIWCKPNEHIYTIIISLLGREGLLEKCSEIFDEMASQGVI 180

Query: 181 RSVFSYTALINAYGRNGRYETSLELLERMKRDRVSPNILTYNTVINACARGDLDWEGLLG 240
           RSVFSYTALINAYGRNG+YETSLELLERMKR+RVSPNILTYNTVINACARGDLDWEGLLG
Sbjct: 181 RSVFSYTALINAYGRNGQYETSLELLERMKRERVSPNILTYNTVINACARGDLDWEGLLG 240

Query: 241 LFAEMRHEGVQPDLVTYNTLLSACAARGLGDEAEMVFKTMIEGGIVPEITTYSSVVETFG 300
           LFAEMRHEGVQPDLVTYNTLLSACAARGLGDEAEMVFKTMIEGGIVPEITTYS +VETFG
Sbjct: 241 LFAEMRHEGVQPDLVTYNTLLSACAARGLGDEAEMVFKTMIEGGIVPEITTYSYIVETFG 300

Query: 301 KLGKLEKVAILLKEMESEGYLPDISSYNVLIEAHAKSGSIKEAMDVFKQMQAAGCVPNAS 360
           KLGKLEKVA+LLKEMESEGYLPDISSYNVLIEAHAK GSIKEAMDVFKQMQAAGCVPNAS
Sbjct: 301 KLGKLEKVAMLLKEMESEGYLPDISSYNVLIEAHAKLGSIKEAMDVFKQMQAAGCVPNAS 360

Query: 361 TYSILLNLYGKHGRYNDVRELFLEMKESSAEPDATTYNILIRVFGEGGYFKEVVTLFHDL 420
           TYSILLNLYGKHGRY+DVRELFL+MKESSAEPDATTYNILIRVFGEGGYFKEVVTLFHDL
Sbjct: 361 TYSILLNLYGKHGRYDDVRELFLQMKESSAEPDATTYNILIRVFGEGGYFKEVVTLFHDL 420

Query: 421 VEEKIDPNMETYEGLVFACGKGGLHEDAKKIFLHMNEKGIVPSSNAYSGLIEAYGQAALY 480
           VEE IDPNMETYEGLVFACGKGGLHEDAKKI  HMNEKGIVPSS AY+GLIEAYGQAALY
Sbjct: 421 VEENIDPNMETYEGLVFACGKGGLHEDAKKILFHMNEKGIVPSSKAYTGLIEAYGQAALY 480

Query: 481 DEALVAFNTMNEIGSKSTVDTYNSLIHTFARGGLYKEFEATLLRMREFGISRNVKSFSGI 540
           DEA+VAFNTMNE+GSKST+DTYNSLIHTFARGGLYKEFEA L RMRE+GISRN KSFSGI
Sbjct: 481 DEAVVAFNTMNEVGSKSTIDTYNSLIHTFARGGLYKEFEAILSRMREYGISRNAKSFSGI 540

Query: 541 IDGYRQGGQFEEAIKSFVEMEKMRCEPDEQTLEAVLGVYCFAGLVDESKEQFQEIKASGI 600
           I+GYRQ GQ+EEAIK+FVEMEKMRCE DEQTLEAVLGVYCFAGLVDESKEQF EIKASGI
Sbjct: 541 IEGYRQSGQYEEAIKAFVEMEKMRCELDEQTLEAVLGVYCFAGLVDESKEQFVEIKASGI 600

Query: 601 LPSVLCYCMMLAVYAKNGRWDEAYELLDEMITNRVSSIHQVIGQMIKGDYDDESNWQMVE 660
           LPSVLCYCMMLAVYAKNGRWD+AYELLDEMI NRVSSIHQVIGQMIKGDYDD+SNWQMVE
Sbjct: 601 LPSVLCYCMMLAVYAKNGRWDDAYELLDEMIKNRVSSIHQVIGQMIKGDYDDDSNWQMVE 660

Query: 661 YVFDKLNAEGCGLGMRFYNTLLEALWWLGQKGRAARVLTEATKRGLFPELFRESKLVWSV 720
           YVFDKLNAEGCG GMRFYNTLLEALWWLGQKGRA RVLTEATKRGLFPELFR+SKLVWSV
Sbjct: 661 YVFDKLNAEGCGFGMRFYNTLLEALWWLGQKGRAGRVLTEATKRGLFPELFRQSKLVWSV 720

Query: 721 DVHRMWEGGAYTAISLWVNKMNEMLMDGENLPQLAAVVVGRGWLEKDSTAQNLPIAKAVY 780
           DVHRMWEGGAYTAISLWVNKMNEMLMDGE++PQLAAVVVG GWLEKDSTA+NLPIA+AV 
Sbjct: 721 DVHRMWEGGAYTAISLWVNKMNEMLMDGEDIPQLAAVVVG-GWLEKDSTARNLPIARAVN 780

Query: 781 SFLQDNVSSSFSFPRWNNGRIVCQQSQLKQLLSNAEASSGEIIILKNSPLTFPEVKVSRS 840
           SFLQDNVSSSFSFP WNNGRIVCQQSQLKQLL+   ASS EII L NSPL  PE K+SRS
Sbjct: 781 SFLQDNVSSSFSFPGWNNGRIVCQQSQLKQLLT---ASSSEIIALNNSPLNLPEAKISRS 840

Query: 841 GINNDKYKDVDSKSSNRTGTELLTTTV 868
           GINNDKYKD+DSKSSNRTGTELLTTTV
Sbjct: 841 GINNDKYKDIDSKSSNRTGTELLTTTV 863

[Close]

BLAST of Sed0019903 vs. ExPASy TrEMBL
Match: A0A6J1C827 (pentatricopeptide repeat-containing protein At1g74850, chloroplastic OS=Momordica charantia OX=3673 GN=LOC111008838 PE=4 SV=1)

HSP 1 Score: 1596.3 bits (4132), Expect = 0.0e+00
Identity = 794/873 (90.95%), Postives = 825/873 (94.50%), Query Frame = 0


Query: 1   MALSPYLSVPNPFQPPTTFQKRYLEPHNLPLLIKPSNFTLRRRFLSDDRRLFSDAGKCRA 60
           MALSP+LS+PN F+  + FQKR+LE H  P L K S+F +RRRFLSDD    S+ GKCRA
Sbjct: 1   MALSPHLSLPNHFRTSSAFQKRFLESHQFPFLSKLSSFHVRRRFLSDDWSFSSNVGKCRA 60

Query: 61  KPKDLVLGNPSVIVEKGKYSYDVETLINKLSSLPPRGSIARCLDIFKNRLSLNDFSLVFK 120
           KPKDLVLGNPSVIVEKGKYSYDVETLINKLSSLPPRGSIARCLDIFKNRLSLNDFS VFK
Sbjct: 61  KPKDLVLGNPSVIVEKGKYSYDVETLINKLSSLPPRGSIARCLDIFKNRLSLNDFSFVFK 120

Query: 121 EFAARGDWQRSLRLFKYMQRQIWCKPNEHIYTIMISLLGREGLLEKCSEVFDEMSSQGVV 180
           EFAARGDWQRSLRLFKYMQRQIWCKPNEHIYTIMISLLGREGLLEKCSE+FDEM+SQGV+
Sbjct: 121 EFAARGDWQRSLRLFKYMQRQIWCKPNEHIYTIMISLLGREGLLEKCSEIFDEMASQGVI 180

Query: 181 RSVFSYTALINAYGRNGRYETSLELLERMKRDRVSPNILTYNTVINACARGDLDWEGLLG 240
           RSVFSYTALINAYGRNG+YETSLEL+ERMKR+RVSPNILTYNTVINACARGDLDWEGLLG
Sbjct: 181 RSVFSYTALINAYGRNGQYETSLELIERMKRERVSPNILTYNTVINACARGDLDWEGLLG 240

Query: 241 LFAEMRHEGVQPDLVTYNTLLSACAARGLGDEAEMVFKTMIEGGIVPEITTYSSVVETFG 300
           LFAEMRHEGVQPDLVTYNTLLSACAARGLGDEAEMVFKTMIEGGIVPEITTYS +VETFG
Sbjct: 241 LFAEMRHEGVQPDLVTYNTLLSACAARGLGDEAEMVFKTMIEGGIVPEITTYSYIVETFG 300

Query: 301 KLGKLEKVAILLKEMESEGYLPDISSYNVLIEAHAKSGSIKEAMDVFKQMQAAGCVPNAS 360
           KLGKLEKVA+LLKEMESEGYLPDISSYNVLIEAHAK GSIKEAMDVFKQMQAAGCVPNAS
Sbjct: 301 KLGKLEKVAMLLKEMESEGYLPDISSYNVLIEAHAKLGSIKEAMDVFKQMQAAGCVPNAS 360

Query: 361 TYSILLNLYGKHGRYNDVRELFLEMKESSAEPDATTYNILIRVFGEGGYFKEVVTLFHDL 420
           TYSILLNLYGKHGRY+DVRELFLEMKESSAEPDATTYNILIRVFGEGGYFKEVVTLFHDL
Sbjct: 361 TYSILLNLYGKHGRYDDVRELFLEMKESSAEPDATTYNILIRVFGEGGYFKEVVTLFHDL 420

Query: 421 VEEKIDPNMETYEGLVFACGKGGLHEDAKKIFLHMNEKGIVPSSNAYSGLIEAYGQAALY 480
           VEEKIDPNMETYEGLVFACGKGGLHEDAKKI LHMNEKGIVPSS AYSGLIEAYG AALY
Sbjct: 421 VEEKIDPNMETYEGLVFACGKGGLHEDAKKILLHMNEKGIVPSSKAYSGLIEAYGLAALY 480

Query: 481 DEALVAFNTMNEIGSKSTVDTYNSLIHTFARGGLYKEFEATLLRMREFGISRNVKSFSGI 540
           DEA+VAFNTMNE+GSKSTVDTYNSLIHTFARGGLYKEFEA LLRMRE GISRNVKSFSGI
Sbjct: 481 DEAVVAFNTMNEVGSKSTVDTYNSLIHTFARGGLYKEFEAILLRMRESGISRNVKSFSGI 540

Query: 541 IDGYRQGGQFEEAIKSFVEMEKMRCEPDEQTLEAVLGVYCFAGLVDESKEQFQEIKASGI 600
           I+GYRQ GQFEEAIK+FVEMEKMRCEPDEQTLEAVLGVYCFAGLVDESKEQF EIKA+GI
Sbjct: 541 IEGYRQSGQFEEAIKAFVEMEKMRCEPDEQTLEAVLGVYCFAGLVDESKEQFHEIKATGI 600

Query: 601 LPSVLCYCMMLAVYAKNGRWDEAYELLDEMITNRVSSIHQVIGQMIKGDYDDESNWQMVE 660
           LPSVLCYCMMLAVYAKNGRWD AYELLDEMITNRVSSIHQVIGQMIKGDYDD+SNWQMVE
Sbjct: 601 LPSVLCYCMMLAVYAKNGRWDNAYELLDEMITNRVSSIHQVIGQMIKGDYDDDSNWQMVE 660

Query: 661 YVFDKLNAEGCGLGMRFYNTLLEALWWLGQKGRAARVLTEATKRGLFPELFRESKLVWSV 720
           YVFDKLNAEGCGLG RFYNTLL+ALWWLGQKGRAARVL EATKRGLFPELFR+SKLVWSV
Sbjct: 661 YVFDKLNAEGCGLGTRFYNTLLDALWWLGQKGRAARVLIEATKRGLFPELFRKSKLVWSV 720

Query: 721 DVHRMWEGGAYTAISLWVNKMNEMLMDGENLPQLAAVVVGRGWLEKDSTAQNLPIAKAVY 780
           DVHRMWEGGAYTAISLWVN MN+M+ D E+LPQLAAVVVGRGWLEKDS AQNLPIAKAVY
Sbjct: 721 DVHRMWEGGAYTAISLWVNTMNKMIKDEEDLPQLAAVVVGRGWLEKDSKAQNLPIAKAVY 780

Query: 781 SFLQDNVSSSFSFPRWNNGRIVCQQSQLKQLLSNAEASS-----GEIIILKNSPLTFPE- 840
           SFLQDNVSSSF FPRWNN RIVCQQSQLKQLLS+AE+SS      EII L NSPL  P  
Sbjct: 781 SFLQDNVSSSFDFPRWNNCRIVCQQSQLKQLLSDAESSSKGPKTNEIITLNNSPLNLPAG 840

Query: 841 VKVSRSGINNDKYKDVDSKSSNRTGTELLTTTV 868
            K+SRSGINNDKYKDVDSKSSNRTGTELLTTTV
Sbjct: 841 SKISRSGINNDKYKDVDSKSSNRTGTELLTTTV 873

[Close]

BLAST of Sed0019903 vs. ExPASy TrEMBL
Match: A0A5D3BJ34 (Pentatricopeptide repeat-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold248G003320 PE=3 SV=1)

HSP 1 Score: 1595.9 bits (4131), Expect = 0.0e+00
Identity = 791/866 (91.34%), Postives = 823/866 (95.03%), Query Frame = 0


Query: 1   MALSPYLSVPNPFQPPTTFQKRYLEPHNLPLLIKPSNFTLRRRFLSDDRRLFSDAGKCRA 60
           MALSPY SV NPF+  +TFQKRYLE   LP L K SNF++RRRF SDD RL SD GK RA
Sbjct: 1   MALSPYFSVSNPFRTSSTFQKRYLECQQLPFLSKLSNFSVRRRFFSDDWRLSSDVGKARA 60

Query: 61  KPKDLVLGNPSVIVEKGKYSYDVETLINKLSSLPPRGSIARCLDIFKNRLSLNDFSLVFK 120
           K KDLVLGNPSVIVEKGKYSYDVETLINKLSSLPPRGSIARCLDIFKNRLSLNDFSLVFK
Sbjct: 61  KAKDLVLGNPSVIVEKGKYSYDVETLINKLSSLPPRGSIARCLDIFKNRLSLNDFSLVFK 120

Query: 121 EFAARGDWQRSLRLFKYMQRQIWCKPNEHIYTIMISLLGREGLLEKCSEVFDEMSSQGVV 180
           EFAARGDWQRSLRLFKYMQRQIWCKPNEHIYTI+ISLLGREGLLEKCSE+FDEM+SQGV+
Sbjct: 121 EFAARGDWQRSLRLFKYMQRQIWCKPNEHIYTIIISLLGREGLLEKCSEIFDEMASQGVI 180

Query: 181 RSVFSYTALINAYGRNGRYETSLELLERMKRDRVSPNILTYNTVINACARGDLDWEGLLG 240
           RSVFSYTALINAYGRNG+YETSLELLERMKR+RVSPNILTYNTVINACARGDLDWEGLLG
Sbjct: 181 RSVFSYTALINAYGRNGQYETSLELLERMKRERVSPNILTYNTVINACARGDLDWEGLLG 240

Query: 241 LFAEMRHEGVQPDLVTYNTLLSACAARGLGDEAEMVFKTMIEGGIVPEITTYSSVVETFG 300
           LFAEMRHEGVQPDLVTYNTLLSACAARGLGDEAEMVFKTMIEGGIVPEITTYS +VETFG
Sbjct: 241 LFAEMRHEGVQPDLVTYNTLLSACAARGLGDEAEMVFKTMIEGGIVPEITTYSYIVETFG 300

Query: 301 KLGKLEKVAILLKEMESEGYLPDISSYNVLIEAHAKSGSIKEAMDVFKQMQAAGCVPNAS 360
           KLGKLEKVA+LLKEMESEGYLPDISSYNVLIEAHAK GSIKEAMDVFKQMQAAGCVPNAS
Sbjct: 301 KLGKLEKVAMLLKEMESEGYLPDISSYNVLIEAHAKLGSIKEAMDVFKQMQAAGCVPNAS 360

Query: 361 TYSILLNLYGKHGRYNDVRELFLEMKESSAEPDATTYNILIRVFGEGGYFKEVVTLFHDL 420
           TYSILLNLYGKHGRY+DVRELFL+MKESSAEPDATTYNILIRVFGEGGYFKEVVTLFHDL
Sbjct: 361 TYSILLNLYGKHGRYDDVRELFLQMKESSAEPDATTYNILIRVFGEGGYFKEVVTLFHDL 420

Query: 421 VEEKIDPNMETYEGLVFACGKGGLHEDAKKIFLHMNEKGIVPSSNAYSGLIEAYGQAALY 480
           VEE IDPNMETYEGLVFACGKGGLHEDAKKI  HMNEKGIVPSS AY+GLIEAYGQAALY
Sbjct: 421 VEENIDPNMETYEGLVFACGKGGLHEDAKKILFHMNEKGIVPSSKAYTGLIEAYGQAALY 480

Query: 481 DEALVAFNTMNEIGSKSTVDTYNSLIHTFARGGLYKEFEATLLRMREFGISRNVKSFSGI 540
           DEA+VAFNTMNE+GSKST+DTYNSLIHTFARGGLYKEFEA L RMRE+GISRN KSFSGI
Sbjct: 481 DEAVVAFNTMNEVGSKSTIDTYNSLIHTFARGGLYKEFEAILSRMREYGISRNAKSFSGI 540

Query: 541 IDGYRQGGQFEEAIKSFVEMEKMRCEPDEQTLEAVLGVYCFAGLVDESKEQFQEIKASGI 600
           I+GYRQ GQ+EEAIK+FVEMEKMRCE DEQTLEAVLGVYCFAGLVDESKEQF EIKASGI
Sbjct: 541 IEGYRQSGQYEEAIKAFVEMEKMRCELDEQTLEAVLGVYCFAGLVDESKEQFVEIKASGI 600

Query: 601 LPSVLCYCMMLAVYAKNGRWDEAYELLDEMITNRVSSIHQVIGQMIKGDYDDESNWQMVE 660
           LPSVLCYCMMLAVYAKNGRWD+AYELLDEMI NRVSSIHQVIGQMIKGDYDD+SNWQMVE
Sbjct: 601 LPSVLCYCMMLAVYAKNGRWDDAYELLDEMIKNRVSSIHQVIGQMIKGDYDDDSNWQMVE 660

Query: 661 YVFDKLNAEGCGLGMRFYNTLLEALWWLGQKGRAARVLTEATKRGLFPELFRESKLVWSV 720
           YVFDKLNAEGCG GMRFYNTLLEALWWLGQKGRA RVLTEATKRGLFPELFR+SKLVWSV
Sbjct: 661 YVFDKLNAEGCGFGMRFYNTLLEALWWLGQKGRAGRVLTEATKRGLFPELFRQSKLVWSV 720

Query: 721 DVHRMWEGGAYTAISLWVNKMNEMLMDGENLPQLAAVVVGRGWLEKDSTAQNLPIAKAVY 780
           DVHRMWEGGAYTAISLWVNKMNEMLMDGE++PQLAAVVVG GWLEKDSTA+NLPIA+AV 
Sbjct: 721 DVHRMWEGGAYTAISLWVNKMNEMLMDGEDIPQLAAVVVG-GWLEKDSTARNLPIARAVN 780

Query: 781 SFLQDNVSSSFSFPRWNNGRIVCQQSQLKQLLSNAEASSGEIIILKNSPLTFPEVKVSRS 840
           SFLQDNVSSSFSFP WNNGRIVCQQSQLKQLL+   ASS EII L NSPL  PE K+SRS
Sbjct: 781 SFLQDNVSSSFSFPGWNNGRIVCQQSQLKQLLT---ASSSEIIALNNSPLNLPEAKISRS 840

Query: 841 GINNDKYKDVDSKSSNRTGTELLTTT 867
           GINNDKYKD+DSKSSNRTGTELLTTT
Sbjct: 841 GINNDKYKDIDSKSSNRTGTELLTTT 862

[Close]

BLAST of Sed0019903 vs. ExPASy TrEMBL
Match: A0A5A7UKU1 (Pentatricopeptide repeat-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold80G00380 PE=4 SV=1)

HSP 1 Score: 1595.5 bits (4130), Expect = 0.0e+00
Identity = 792/866 (91.45%), Postives = 822/866 (94.92%), Query Frame = 0


Query: 1   MALSPYLSVPNPFQPPTTFQKRYLEPHNLPLLIKPSNFTLRRRFLSDDRRLFSDAGKCRA 60
           MALSPY SV NPF+  +TFQKRYLE   LP L K SNF++RRRF SDD RL SD GK RA
Sbjct: 1   MALSPYFSVSNPFRTSSTFQKRYLECQQLPFLSKLSNFSVRRRFFSDDWRLSSDVGKARA 60

Query: 61  KPKDLVLGNPSVIVEKGKYSYDVETLINKLSSLPPRGSIARCLDIFKNRLSLNDFSLVFK 120
           K KDLVLGNPSVIVEKGKYSYDVETLINKLSSLPPRGSIARCLDIFKNRLSLNDFSLVFK
Sbjct: 61  KAKDLVLGNPSVIVEKGKYSYDVETLINKLSSLPPRGSIARCLDIFKNRLSLNDFSLVFK 120

Query: 121 EFAARGDWQRSLRLFKYMQRQIWCKPNEHIYTIMISLLGREGLLEKCSEVFDEMSSQGVV 180
           EFAARGDWQRSLRLFKYMQRQIWCKPNEHIYTI+ISLLGREGLLEKCSE+FDEM+SQGV+
Sbjct: 121 EFAARGDWQRSLRLFKYMQRQIWCKPNEHIYTIIISLLGREGLLEKCSEIFDEMASQGVI 180

Query: 181 RSVFSYTALINAYGRNGRYETSLELLERMKRDRVSPNILTYNTVINACARGDLDWEGLLG 240
           RSVFSYTALINAYGRNG+YETSLELLERMKR+RVSPNILTYNTVINACARGDLDWEGLLG
Sbjct: 181 RSVFSYTALINAYGRNGQYETSLELLERMKRERVSPNILTYNTVINACARGDLDWEGLLG 240

Query: 241 LFAEMRHEGVQPDLVTYNTLLSACAARGLGDEAEMVFKTMIEGGIVPEITTYSSVVETFG 300
           LFAEMRHEGVQPDLVTYNTLLSACAARGLGDEAEMVFKTMIEGGIVPEITTYS +VETFG
Sbjct: 241 LFAEMRHEGVQPDLVTYNTLLSACAARGLGDEAEMVFKTMIEGGIVPEITTYSYIVETFG 300

Query: 301 KLGKLEKVAILLKEMESEGYLPDISSYNVLIEAHAKSGSIKEAMDVFKQMQAAGCVPNAS 360
           KLGKLEKVA+LLKEMESEGYLPDISSYNVLIEAHAK GSIKEAMDVFKQMQAAGCVPNAS
Sbjct: 301 KLGKLEKVAMLLKEMESEGYLPDISSYNVLIEAHAKLGSIKEAMDVFKQMQAAGCVPNAS 360

Query: 361 TYSILLNLYGKHGRYNDVRELFLEMKESSAEPDATTYNILIRVFGEGGYFKEVVTLFHDL 420
           TYSILLNLYGKHGRY+DVRELFL+MKESSAEPDATTYNILIRVFGEGGYFKEVVTLFHDL
Sbjct: 361 TYSILLNLYGKHGRYDDVRELFLQMKESSAEPDATTYNILIRVFGEGGYFKEVVTLFHDL 420

Query: 421 VEEKIDPNMETYEGLVFACGKGGLHEDAKKIFLHMNEKGIVPSSNAYSGLIEAYGQAALY 480
           VEE IDPNMETYEGLVFACGKGGLHEDAKKI  HMNEKGIVPSS AY+GLIEAYGQAALY
Sbjct: 421 VEENIDPNMETYEGLVFACGKGGLHEDAKKILFHMNEKGIVPSSKAYTGLIEAYGQAALY 480

Query: 481 DEALVAFNTMNEIGSKSTVDTYNSLIHTFARGGLYKEFEATLLRMREFGISRNVKSFSGI 540
           DEA+VAFNTMNE+GSKST+DTYNSLIHTFARGGLYKEFEA L RMRE+GISRN KSFSGI
Sbjct: 481 DEAVVAFNTMNEVGSKSTIDTYNSLIHTFARGGLYKEFEAILSRMREYGISRNAKSFSGI 540

Query: 541 IDGYRQGGQFEEAIKSFVEMEKMRCEPDEQTLEAVLGVYCFAGLVDESKEQFQEIKASGI 600
           I+GYRQ GQ+EEAIK+FVEMEKMRCE DEQTLEAVLGVYCFAGLVDESKEQF EIKASGI
Sbjct: 541 IEGYRQSGQYEEAIKAFVEMEKMRCELDEQTLEAVLGVYCFAGLVDESKEQFVEIKASGI 600

Query: 601 LPSVLCYCMMLAVYAKNGRWDEAYELLDEMITNRVSSIHQVIGQMIKGDYDDESNWQMVE 660
           LPSVLCYCMMLAVYAKNGRWD+AYELLDEMI NRVSSIHQVIGQMIKGDYDD+SNWQMVE
Sbjct: 601 LPSVLCYCMMLAVYAKNGRWDDAYELLDEMIKNRVSSIHQVIGQMIKGDYDDDSNWQMVE 660

Query: 661 YVFDKLNAEGCGLGMRFYNTLLEALWWLGQKGRAARVLTEATKRGLFPELFRESKLVWSV 720
           YVFDKLNAEGCG GMRFYNTLLEALWWLGQKGRA RVLTEATKRGLFPELFR+SKLVWSV
Sbjct: 661 YVFDKLNAEGCGFGMRFYNTLLEALWWLGQKGRAGRVLTEATKRGLFPELFRQSKLVWSV 720

Query: 721 DVHRMWEGGAYTAISLWVNKMNEMLMDGENLPQLAAVVVGRGWLEKDSTAQNLPIAKAVY 780
           DVHRMWEGGAYTAISLWVNKMNEMLMDGE+LPQLAAVVVG GWLEKDSTA+NLPIA AV 
Sbjct: 721 DVHRMWEGGAYTAISLWVNKMNEMLMDGEDLPQLAAVVVG-GWLEKDSTARNLPIAMAVN 780

Query: 781 SFLQDNVSSSFSFPRWNNGRIVCQQSQLKQLLSNAEASSGEIIILKNSPLTFPEVKVSRS 840
           SFLQDNVSSSFSFP WNNGRIVCQQSQLKQLL+   ASS EII L NSPL  PE K+SRS
Sbjct: 781 SFLQDNVSSSFSFPGWNNGRIVCQQSQLKQLLT---ASSSEIIALNNSPLNLPEAKISRS 840

Query: 841 GINNDKYKDVDSKSSNRTGTELLTTT 867
           GINNDKYKD+DSKSSNRTGTELLTTT
Sbjct: 841 GINNDKYKDIDSKSSNRTGTELLTTT 862

[Close]

BLAST of Sed0019903 vs. TAIR 10
Match: AT1G74850.1 (plastid transcriptionally active 2 )

HSP 1 Score: 1237.2 bits (3200), Expect = 0.0e+00
Identity = 616/874 (70.48%), Postives = 724/874 (82.84%), Query Frame = 0


Query: 7   LSVPNPFQPPTTFQKRYLEPHNLPLLIKPSNFTLRRRFLSDDRRLF---------SDAGK 66
           L++PNP              H+L  LI+ S+F   RRF   +R  F         S +GK
Sbjct: 3   LAIPNP------------NSHHLSFLIQNSSFIGNRRFADGNRLRFLSGGNRKPCSFSGK 62

Query: 67  CRAKPKDLVLGNPSVIVEKGKYSYDVETLINKLSSLPPRGSIARCLDIFKNRLSLNDFSL 126
            +AK KDLVLGNPSV VEKGKYSYDVE+LINKLSSLPPRGSIARCLDIFKN+LSLNDF+L
Sbjct: 63  IKAKTKDLVLGNPSVSVEKGKYSYDVESLINKLSSLPPRGSIARCLDIFKNKLSLNDFAL 122

Query: 127 VFKEFAARGDWQRSLRLFKYMQRQIWCKPNEHIYTIMISLLGREGLLEKCSEVFDEMSSQ 186
           VFKEFA RGDWQRSLRLFKYMQRQIWCKPNEHIYTIMISLLGREGLL+KC EVFDEM SQ
Sbjct: 123 VFKEFAGRGDWQRSLRLFKYMQRQIWCKPNEHIYTIMISLLGREGLLDKCLEVFDEMPSQ 182

Query: 187 GVVRSVFSYTALINAYGRNGRYETSLELLERMKRDRVSPNILTYNTVINACARGDLDWEG 246
           GV RSVFSYTALINAYGRNGRYETSLELL+RMK +++SP+ILTYNTVINACARG LDWEG
Sbjct: 183 GVSRSVFSYTALINAYGRNGRYETSLELLDRMKNEKISPSILTYNTVINACARGGLDWEG 242

Query: 247 LLGLFAEMRHEGVQPDLVTYNTLLSACAARGLGDEAEMVFKTMIEGGIVPEITTYSSVVE 306
           LLGLFAEMRHEG+QPD+VTYNTLLSACA RGLGDEAEMVF+TM +GGIVP++TTYS +VE
Sbjct: 243 LLGLFAEMRHEGIQPDIVTYNTLLSACAIRGLGDEAEMVFRTMNDGGIVPDLTTYSHLVE 302

Query: 307 TFGKLGKLEKVAILLKEMESEGYLPDISSYNVLIEAHAKSGSIKEAMDVFKQMQAAGCVP 366
           TFGKL +LEKV  LL EM S G LPDI+SYNVL+EA+AKSGSIKEAM VF QMQAAGC P
Sbjct: 303 TFGKLRRLEKVCDLLGEMASGGSLPDITSYNVLLEAYAKSGSIKEAMGVFHQMQAAGCTP 362

Query: 367 NASTYSILLNLYGKHGRYNDVRELFLEMKESSAEPDATTYNILIRVFGEGGYFKEVVTLF 426
           NA+TYS+LLNL+G+ GRY+DVR+LFLEMK S+ +PDA TYNILI VFGEGGYFKEVVTLF
Sbjct: 363 NANTYSVLLNLFGQSGRYDDVRQLFLEMKSSNTDPDAATYNILIEVFGEGGYFKEVVTLF 422

Query: 427 HDLVEEKIDPNMETYEGLVFACGKGGLHEDAKKIFLHMNEKGIVPSSNAYSGLIEAYGQA 486
           HD+VEE I+P+METYEG++FACGKGGLHEDA+KI  +M    IVPSS AY+G+IEA+GQA
Sbjct: 423 HDMVEENIEPDMETYEGIIFACGKGGLHEDARKILQYMTANDIVPSSKAYTGVIEAFGQA 482

Query: 487 ALYDEALVAFNTMNEIGSKSTVDTYNSLIHTFARGGLYKEFEATLLRMREFGISRNVKSF 546
           ALY+EALVAFNTM+E+GS  +++T++SL+++FARGGL KE EA L R+ + GI RN  +F
Sbjct: 483 ALYEEALVAFNTMHEVGSNPSIETFHSLLYSFARGGLVKESEAILSRLVDSGIPRNRDTF 542

Query: 547 SGIIDGYRQGGQFEEAIKSFVEMEKMRCEPDEQTLEAVLGVYCFAGLVDESKEQFQEIKA 606
           +  I+ Y+QGG+FEEA+K++V+MEK RC+PDE+TLEAVL VY FA LVDE +EQF+E+KA
Sbjct: 543 NAQIEAYKQGGKFEEAVKTYVDMEKSRCDPDERTLEAVLSVYSFARLVDECREQFEEMKA 602

Query: 607 SGILPSVLCYCMMLAVYAKNGRWDEAYELLDEMITNRVSSIHQVIGQMIKGDYDDESNWQ 666
           S ILPS++CYCMMLAVY K  RWD+  ELL+EM++NRVS+IHQVIGQMIKGDYDD+SNWQ
Sbjct: 603 SDILPSIMCYCMMLAVYGKTERWDDVNELLEEMLSNRVSNIHQVIGQMIKGDYDDDSNWQ 662

Query: 667 MVEYVFDKLNAEGCGLGMRFYNTLLEALWWLGQKGRAARVLTEATKRGLFPELFRESKLV 726
           +VEYV DKLN+EGCGLG+RFYN LL+ALWWLGQK RAARVL EATKRGLFPELFR++KLV
Sbjct: 663 IVEYVLDKLNSEGCGLGIRFYNALLDALWWLGQKERAARVLNEATKRGLFPELFRKNKLV 722

Query: 727 WSVDVHRMWEGGAYTAISLWVNKMNEMLMDGENLPQLAAVVVGRGWLEKDSTAQNLPIAK 786
           WSVDVHRM EGG YTA+S+W+N +N+ML+ G+ LPQLA VV  RG LEK S A+  PIAK
Sbjct: 723 WSVDVHRMSEGGMYTALSVWLNDINDMLLKGD-LPQLAVVVSVRGQLEKSSAARESPIAK 782

Query: 787 AVYSFLQDNVSSSFSFPRWNNGRIVCQQSQLKQLLSNAEASSGE-----IIILKNSPLTF 846
           A +SFLQD+VSSSFSF  WN GRI+CQ+SQLKQLLS  E +S E     ++ L NSP+  
Sbjct: 783 AAFSFLQDHVSSSFSFTGWNGGRIMCQRSQLKQLLSTKEPTSEESENKNLVALANSPIFA 842

Query: 847 PEVKVSRSGINNDKYKDVDSKSSNRTGTELLTTT 867
              + S S   N  +    ++   RT  EL  +T
Sbjct: 843 AGTRASTSSDTN--HSGNPTQRRTRTKKELAGST 861

[Close]

BLAST of Sed0019903 vs. TAIR 10
Match: AT2G31400.1 (genomes uncoupled 1 )

HSP 1 Score: 300.4 bits (768), Expect = 4.5e-81
Identity = 191/722 (26.45%), Postives = 361/722 (50.00%), Query Frame = 0


Query: 113 NDFSLVFKEFAARGDWQRSLRLFKY-MQRQIWCKPNEHIYTIMISLLGREGLLEKCSEVF 172
           +D + + +E   R +  +++  +++ ++R+        + + MIS LGR G +     +F
Sbjct: 197 DDCTYIIRELGNRNECDKAVGFYEFAVKRERRKNEQGKLASAMISTLGRYGKVTIAKRIF 256

Query: 173 DEMSSQGVVRSVFSYTALINAYGRNGRYETSLELLERMKRDRVSPNILTYNTVINACARG 232
           +   + G   +V++++ALI+AYGR+G +E ++ +   MK   + PN++TYN VI+AC +G
Sbjct: 257 ETAFAGGYGNTVYAFSALISAYGRSGLHEEAISVFNSMKEYGLRPNLVTYNAVIDACGKG 316

Query: 233 DLDWEGLLGLFAEMRHEGVQPDLVTYNTLLSACAARGLGDEAEMVFKTMIEGGIVPEITT 292
            ++++ +   F EM+  GVQPD +T+N+LL+ C+  GL + A  +F  M    I  ++ +
Sbjct: 317 GMEFKQVAKFFDEMQRNGVQPDRITFNSLLAVCSRGGLWEAARNLFDEMTNRRIEQDVFS 376

Query: 293 YSSVVETFGKLGKLEKVAILLKEMESEGYLPDISSYNVLIEAHAKSGSIKEAMDVFKQMQ 352
           Y+++++   K G+++    +L +M  +  +P++ SY+ +I+  AK+G   EA+++F +M+
Sbjct: 377 YNTLLDAICKGGQMDLAFEILAQMPVKRIMPNVVSYSTVIDGFAKAGRFDEALNLFGEMR 436

Query: 353 AAGCVPNASTYSILLNLYGKHGRYNDVRELFLEMKESSAEPDATTYNILIRVFGEGGYFK 412
             G   +  +Y+ LL++Y K GR  +  ++  EM     + D  TYN L+  +G+ G + 
Sbjct: 437 YLGIALDRVSYNTLLSIYTKVGRSEEALDILREMASVGIKKDVVTYNALLGGYGKQGKYD 496

Query: 413 EVVTLFHDLVEEKIDPNMETYEGLVFACGKGGLHEDAKKIFLHMNEKGIVPSSNAYSGLI 472
           EV  +F ++  E + PN+ TY  L+    KGGL+++A +IF      G+      YS LI
Sbjct: 497 EVKKVFTEMKREHVLPNLLTYSTLIDGYSKGGLYKEAMEIFREFKSAGLRADVVLYSALI 556

Query: 473 EAYGQAALYDEALVAFNTMNEIGSKSTVDTYNSLIHTFARGGLYKEFEATLLRMREFGIS 532
           +A  +  L   A+   + M + G    V TYNS+I  F R        AT+ R  ++   
Sbjct: 557 DALCKNGLVGSAVSLIDEMTKEGISPNVVTYNSIIDAFGR-------SATMDRSADYSNG 616

Query: 533 RNVKSFSGII------DGYRQGGQFEEAIKSFVEMEKMRCEPDEQTLEAVLGVYCFAGLV 592
            ++   S  +      +G R    F +            CE   Q L  +L         
Sbjct: 617 GSLPFSSSALSALTETEGNRVIQLFGQLTTESNNRTTKDCEEGMQELSCIL--------- 676

Query: 593 DESKEQFQEIKASGILPSVLCYCMMLAVYAKNGRWDEAYELLDE--MITNRVSSIHQVIG 652
               E F+++    I P+V+ +  +L   ++   +++A  LL+E  +  N+V   + V+ 
Sbjct: 677 ----EVFRKMHQLEIKPNVVTFSAILNACSRCNSFEDASMLLEELRLFDNKV---YGVVH 736

Query: 653 QMIKGDYDDESNWQMVEYVFDKLNAEGCGLGMRFYNTLLEALWWLGQKGRAARVLTEATK 712
            ++ G    E+ W   + +FDK+N         FYN L + LW  GQK  A  V  E   
Sbjct: 737 GLLMG--QRENVWLQAQSLFDKVNEMDGSTASAFYNALTDMLWHFGQKRGAELVALEGRS 796

Query: 713 RGLFPELFRESKLVWSVDVHRMWEGGAYTAISLWVNKMNEMLMDGENLPQLAAVVVGRGW 772
           R ++  ++ +S L    D+H M  G A   +  W+  +  ++ +G  LP++ +++   GW
Sbjct: 797 RQVWENVWSDSCL----DLHLMSSGAARAMVHAWLLNIRSIVYEGHELPKVLSILT--GW 856

Query: 773 LEKDSTAQNLPIAKAVYSFLQDNVSSSFSFPRWNNGRIVCQQSQLKQLLSNAEASSGEII 826
            +      +  + +AV   L+  + + F   + N GR     S +   L   E+++ +++
Sbjct: 857 GKHSKVVGDGALRRAVEVLLR-GMDAPFHLSKCNMGRFTSSGSVVATWL--RESATLKLL 884

[Close]

BLAST of Sed0019903 vs. TAIR 10
Match: AT2G18940.1 (Tetratricopeptide repeat (TPR)-like superfamily protein )

HSP 1 Score: 298.9 bits (764), Expect = 1.3e-80
Identity = 175/635 (27.56%), Postives = 312/635 (49.13%), Query Frame = 0


Query: 86  LINKLSSLPPRGSIARCLDIFKNRLSLNDFSLVFKEFAARGDWQRSLRLFKYM---QRQI 145
           L+N +   P  G ++R  D  K+ L   D   + K     G W+R++ LF+++       
Sbjct: 111 LVNSIVEQPLTG-LSRFFDSVKSELLRTDLVSLVKGLDDSGHWERAVFLFEWLVLSSNSG 170

Query: 146 WCKPNEHIYTIMISLLGREGLLEKCSEVFDEMSSQGVVRSVFSYTALINAYGRNGRYETS 205
             K +  +  I + +LGRE      +++ D++  Q  +  V +YT +++AY R G+YE +
Sbjct: 171 ALKLDHQVIEIFVRILGRESQYSVAAKLLDKIPLQEYLLDVRAYTTILHAYSRTGKYEKA 230

Query: 206 LELLERMKRDRVSPNILTYNTVINACARGDLDWEGLLGLFAEMRHEGVQPDLVTYNTLLS 265
           ++L ERMK    SP ++TYN +++   +    W  +LG+  EMR +G++ D  T +T+LS
Sbjct: 231 IDLFERMKEMGPSPTLVTYNVILDVFGKMGRSWRKILGVLDEMRSKGLKFDEFTCSTVLS 290

Query: 266 ACAARGLGDEAEMVFKTMIEGGIVPEITTYSSVVETFGKLGKLEKVAILLKEMESEGYLP 325
           ACA  GL  EA+  F  +   G  P   TY+++++ FGK G   +   +LKEME      
Sbjct: 291 ACAREGLLREAKEFFAELKSCGYEPGTVTYNALLQVFGKAGVYTEALSVLKEMEENSCPA 350

Query: 326 DISSYNVLIEAHAKSGSIKEAMDVFKQMQAAGCVPNASTYSILLNLYGKHGRYNDVRELF 385
           D  +YN L+ A+ ++G  KEA  V + M   G +PNA TY+ +++ YGK G+ ++  +LF
Sbjct: 351 DSVTYNELVAAYVRAGFSKEAAGVIEMMTKKGVMPNAITYTTVIDAYGKAGKEDEALKLF 410

Query: 386 LEMKESSAEPDATTYNILIRVFGEGGYFKEVVTLFHDLVEEKIDPNMETYEGLVFACGKG 445
             MKE+   P+  TYN ++ + G+     E++ +  D+      PN  T+  ++  CG  
Sbjct: 411 YSMKEAGCVPNTCTYNAVLSLLGKKSRSNEMIKMLCDMKSNGCSPNRATWNTMLALCGNK 470

Query: 446 GLHEDAKKIFLHMNEKGIVPSSNAYSGLIEAYGQAALYDEALVAFNTMNEIGSKSTVDTY 505
           G+ +   ++F  M   G  P  + ++ LI AYG+     +A   +  M   G  + V TY
Sbjct: 471 GMDKFVNRVFREMKSCGFEPDRDTFNTLISAYGRCGSEVDASKMYGEMTRAGFNACVTTY 530

Query: 506 NSLIHTFARGGLYKEFEATLLRMREFGISRNVKSFSGIIDGYRQGGQFEEAIKSFVEMEK 565
           N+L++  AR G ++  E  +  M+  G      S+S ++  Y +GG +    +    +++
Sbjct: 531 NALLNALARKGDWRSGENVISDMKSKGFKPTETSYSLMLQCYAKGGNYLGIERIENRIKE 590

Query: 566 MRCEPDEQTLEAVLGVYCFAGLVDESKEQFQEIKASGILPSVLCYCMMLAVYAKNGRWDE 625
            +  P    L  +L        +  S+  F   K  G  P ++ +  ML+++ +N  +D+
Sbjct: 591 GQIFPSWMLLRTLLLANFKCRALAGSERAFTLFKKHGYKPDMVIFNSMLSIFTRNNMYDQ 650

Query: 626 AYELLDEMITNRVSSIHQVIGQMIKGDYDDESNWQMVEYVFDKLNAEGCGLGMRFYNTLL 685
           A  +L+ +  + +S    V    +   Y         E +   L        +  YNT++
Sbjct: 651 AEGILESIREDGLSP-DLVTYNSLMDMYVRRGECWKAEEILKTLEKSQLKPDLVSYNTVI 710

Query: 686 EALWWLGQKGRAARVLTEATKRGLFPELFRESKLV 718
           +     G    A R+L+E T+RG+ P +F  +  V
Sbjct: 711 KGFCRRGLMQEAVRMLSEMTERGIRPCIFTYNTFV 743

[Close]

BLAST of Sed0019903 vs. TAIR 10
Match: AT5G02860.1 (Pentatricopeptide repeat (PPR) superfamily protein )

HSP 1 Score: 287.3 bits (734), Expect = 4.0e-77
Identity = 154/599 (25.71%), Postives = 299/599 (49.92%), Query Frame = 0


Query: 131 SLRLFKYM--QRQIWCKPNEHIYTIMISLLGREGLLEKCSEVFDEMSSQGVVRSVFSYTA 190
           +LR F +   Q+      +  +  I+IS+LG+EG +   + +F+ +   G    V+SYT+
Sbjct: 154 ALRAFDWFMKQKDYQSMLDNSVVAIIISMLGKEGRVSSAANMFNGLQEDGFSLDVYSYTS 213

Query: 191 LINAYGRNGRYETSLELLERMKRDRVSPNILTYNTVINACARGDLDWEGLLGLFAEMRHE 250
           LI+A+  +GRY  ++ + ++M+ D   P ++TYN ++N   +    W  +  L  +M+ +
Sbjct: 214 LISAFANSGRYREAVNVFKKMEEDGCKPTLITYNVILNVFGKMGTPWNKITSLVEKMKSD 273

Query: 251 GVQPDLVTYNTLLSACAARGLGDEAEMVFKTMIEGGIVPEITTYSSVVETFGKLGKLEKV 310
           G+ PD  TYNTL++ C    L  EA  VF+ M   G   +  TY+++++ +GK  + ++ 
Sbjct: 274 GIAPDAYTYNTLITCCKRGSLHQEAAQVFEEMKAAGFSYDKVTYNALLDVYGKSHRPKEA 333

Query: 311 AILLKEMESEGYLPDISSYNVLIEAHAKSGSIKEAMDVFKQMQAAGCVPNASTYSILLNL 370
             +L EM   G+ P I +YN LI A+A+ G + EAM++  QM   G  P+  TY+ LL+ 
Sbjct: 334 MKVLNEMVLNGFSPSIVTYNSLISAYARDGMLDEAMELKNQMAEKGTKPDVFTYTTLLSG 393

Query: 371 YGKHGRYNDVRELFLEMKESSAEPDATTYNILIRVFGEGGYFKEVVTLFHDLVEEKIDPN 430
           + + G+      +F EM+ +  +P+  T+N  I+++G  G F E++ +F ++    + P+
Sbjct: 394 FERAGKVESAMSIFEEMRNAGCKPNICTFNAFIKMYGNRGKFTEMMKIFDEINVCGLSPD 453

Query: 431 METYEGLVFACGKGGLHEDAKKIFLHMNEKGIVPSSNAYSGLIEAYGQAALYDEALVAFN 490
           + T+  L+   G+ G+  +   +F  M   G VP    ++ LI AY +   +++A+  + 
Sbjct: 454 IVTWNTLLAVFGQNGMDSEVSGVFKEMKRAGFVPERETFNTLISAYSRCGSFEQAMTVYR 513

Query: 491 TMNEIGSKSTVDTYNSLIHTFARGGLYKEFEATLLRMREFGISRNVKSFSGIIDGYRQGG 550
            M + G    + TYN+++   ARGG++++ E  L  M +     N  ++  ++  Y  G 
Sbjct: 514 RMLDAGVTPDLSTYNTVLAALARGGMWEQSEKVLAEMEDGRCKPNELTYCSLLHAYANGK 573

Query: 551 QFEEAIKSFVEMEKMRCEPDEQTLEAVLGVYCFAGLVDESKEQFQEIKASGILPSVLCYC 610
           +         E+     EP    L+ ++ V     L+ E++  F E+K  G  P +    
Sbjct: 574 EIGLMHSLAEEVYSGVIEPRAVLLKTLVLVCSKCDLLPEAERAFSELKERGFSPDITTLN 633

Query: 611 MMLAVYAKNGRWDEAYELLDEMITNRVSSIHQVIGQMIKGDYDDESNWQMVEYVFDKLNA 670
            M+++Y +     +A  +LD M   R  +        +   +   +++   E +  ++ A
Sbjct: 634 SMVSIYGRRQMVAKANGVLDYM-KERGFTPSMATYNSLMYMHSRSADFGKSEEILREILA 693

Query: 671 EGCGLGMRFYNTLLEALWWLGQKGRAARVLTEATKRGLFPELFRESKLVWSVDVHRMWE 728
           +G    +  YNT++ A     +   A+R+ +E    G+ P++   +  + S     M+E
Sbjct: 694 KGIKPDIISYNTVIYAYCRNTRMRDASRIFSEMRNSGIVPDVITYNTFIGSYAADSMFE 751

[Close]

BLAST of Sed0019903 vs. TAIR 10
Match: AT2G41720.1 (Tetratricopeptide repeat (TPR)-like superfamily protein )

HSP 1 Score: 246.5 bits (628), Expect = 7.8e-65
Identity = 154/551 (27.95%), Postives = 271/551 (49.18%), Query Frame = 0


Query: 90  LSSLPPRGSIARCLDIF------KNRLSLNDFSLVFKEFAARGDWQRSLR-LFKYMQRQI 149
           +  L  RG I  C+++F      KN  + ND   +     AR +W    R LF  MQ+  
Sbjct: 114 IRELSRRGCIELCVNVFKWMKIQKNYCARNDIYNMMIRLHARHNWVDQARGLFFEMQK-- 173

Query: 150 W-CKPNEHIYTIMISLLGREGLLEKCSEVFDEMSSQGVVRSVFSYTALINAYGRNGRYET 209
           W CKP+   Y  +I+  GR G       + D+M    +  S  +Y  LINA G +G +  
Sbjct: 174 WSCKPDAETYDALINAHGRAGQWRWAMNLMDDMLRAAIAPSRSTYNNLINACGSSGNWRE 233

Query: 210 SLELLERMKRDRVSPNILTYNTVINACARGDLDWEGLLGLFAEMRHEGVQPDLVTYNTLL 269
           +LE+ ++M  + V P+++T+N V++A   G   +   L  F  M+   V+PD  T+N ++
Sbjct: 234 ALEVCKKMTDNGVGPDLVTHNIVLSAYKSG-RQYSKALSYFELMKGAKVRPDTTTFNIII 293

Query: 270 SACAARGLGDEAEMVFKTMIE--GGIVPEITTYSSVVETFGKLGKLEKVAILLKEMESEG 329
              +  G   +A  +F +M E      P++ T++S++  +   G++E    + + M +EG
Sbjct: 294 YCLSKLGQSSQALDLFNSMREKRAECRPDVVTFTSIMHLYSVKGEIENCRAVFEAMVAEG 353

Query: 330 YLPDISSYNVLIEAHAKSGSIKEAMDVFKQMQAAGCVPNASTYSILLNLYGKHGRYNDVR 389
             P+I SYN L+ A+A  G    A+ V   ++  G +P+  +Y+ LLN YG+  +    +
Sbjct: 354 LKPNIVSYNALMGAYAVHGMSGTALSVLGDIKQNGIIPDVVSYTCLLNSYGRSRQPGKAK 413

Query: 390 ELFLEMKESSAEPDATTYNILIRVFGEGGYFKEVVTLFHDLVEEKIDPNMETYEGLVFAC 449
           E+FL M++   +P+  TYN LI  +G  G+  E V +F  + ++ I PN+ +   L+ AC
Sbjct: 414 EVFLMMRKERRKPNVVTYNALIDAYGSNGFLAEAVEIFRQMEQDGIKPNVVSVCTLLAAC 473

Query: 450 GKGGLHEDAKKIFLHMNEKGIVPSSNAYSGLIEAYGQAALYDEALVAFNTMNEIGSKSTV 509
            +     +   +      +GI  ++ AY+  I +Y  AA  ++A+  + +M +   K+  
Sbjct: 474 SRSKKKVNVDTVLSAAQSRGINLNTAAYNSAIGSYINAAELEKAIALYQSMRKKKVKADS 533

Query: 510 DTYNSLIHTFARGGLYKEFEATLLRMREFGISRNVKSFSGIIDGYRQGGQFEEAIKSFVE 569
            T+  LI    R   Y E  + L  M +  I    + +S ++  Y + GQ  EA   F +
Sbjct: 534 VTFTILISGSCRMSKYPEAISYLKEMEDLSIPLTKEVYSSVLCAYSKQGQVTEAESIFNQ 593

Query: 570 MEKMRCEPDEQTLEAVLGVYCFAGLVDESKEQFQEIKASGILPSVLCYCMMLAVYAKNGR 629
           M+   CEPD     ++L  Y  +    ++ E F E++A+GI P  +    ++  + K G+
Sbjct: 594 MKMAGCEPDVIAYTSMLHAYNASEKWGKACELFLEMEANGIEPDSIACSALMRAFNKGGQ 653

Query: 630 WDEAYELLDEM 631
               + L+D M
Sbjct: 654 PSNVFVLMDLM 661

The following BLAST results are available for this feature:

BLAST of Sed0019903 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038894203.1	0.0e+00	93.08	pentatricopeptide repeat-containing protein At1g74850, chloroplastic isoform X1 ...	[more]
XP_038894204.1	0.0e+00	92.96	pentatricopeptide repeat-containing protein At1g74850, chloroplastic isoform X2 ...	[more]
XP_008437850.1	0.0e+00	91.46	PREDICTED: pentatricopeptide repeat-containing protein At1g74850, chloroplastic ...	[more]
XP_008437858.1	0.0e+00	91.35	PREDICTED: pentatricopeptide repeat-containing protein At1g74850, chloroplastic ...	[more]
XP_022137367.1	0.0e+00	90.95	pentatricopeptide repeat-containing protein At1g74850, chloroplastic [Momordica ...	[more]

BLAST of Sed0019903 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9S7Q2	0.0e+00	70.48	Pentatricopeptide repeat-containing protein At1g74850, chloroplastic OS=Arabidop...	[more]
Q9SIC9	6.4e-80	26.45	Pentatricopeptide repeat-containing protein At2g31400, chloroplastic OS=Arabidop...	[more]
O64624	1.9e-79	27.56	Pentatricopeptide repeat-containing protein At2g18940, chloroplastic OS=Arabidop...	[more]
Q9LYZ9	5.6e-76	25.71	Pentatricopeptide repeat-containing protein At5g02860 OS=Arabidopsis thaliana OX...	[more]
B8Y6I0	8.1e-75	28.14	Pentatricopeptide repeat-containing protein 10, chloroplastic OS=Zea mays OX=457...	[more]

BLAST of Sed0019903 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3AUM4	0.0e+00	91.46	pentatricopeptide repeat-containing protein At1g74850, chloroplastic isoform X1 ...	[more]
A0A1S3AVM1	0.0e+00	91.35	pentatricopeptide repeat-containing protein At1g74850, chloroplastic isoform X2 ...	[more]
A0A6J1C827	0.0e+00	90.95	pentatricopeptide repeat-containing protein At1g74850, chloroplastic OS=Momordic...	[more]
A0A5D3BJ34	0.0e+00	91.34	Pentatricopeptide repeat-containing protein OS=Cucumis melo var. makuwa OX=11946...	[more]
A0A5A7UKU1	0.0e+00	91.45	Pentatricopeptide repeat-containing protein OS=Cucumis melo var. makuwa OX=11946...	[more]

BLAST of Sed0019903 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G74850.1	0.0e+00	70.48	plastid transcriptionally active 2	[more]
AT2G31400.1	4.5e-81	26.45	genomes uncoupled 1	[more]
AT2G18940.1	1.3e-80	27.56	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]
AT5G02860.1	4.0e-77	25.71	Pentatricopeptide repeat (PPR) superfamily protein	[more]
AT2G41720.1	7.8e-65	27.95	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002885	Pentatricopeptide repeat	PFAM	PF12854	PPR_1	coord: 599..630 e-value: 1.0E-6 score: 28.3
IPR002885	Pentatricopeptide repeat	TIGRFAM	TIGR00756	TIGR00756	coord: 501..533 e-value: 7.3E-5 score: 20.7 coord: 536..569 e-value: 1.3E-5 score: 23.1 coord: 291..324 e-value: 5.9E-4 score: 17.8 coord: 150..182 e-value: 1.3E-7 score: 29.3 coord: 220..253 e-value: 3.1E-4 score: 18.7 coord: 184..218 e-value: 7.0E-9 score: 33.3 coord: 255..287 e-value: 1.1E-7 score: 29.6 coord: 606..635 e-value: 5.3E-7 score: 27.4 coord: 431..463 e-value: 2.1E-4 score: 19.2 coord: 326..359 e-value: 1.1E-10 score: 39.0 coord: 396..428 e-value: 3.5E-6 score: 24.8 coord: 361..394 e-value: 1.1E-7 score: 29.6
IPR002885	Pentatricopeptide repeat	PFAM	PF13041	PPR_2	coord: 322..367 e-value: 4.1E-14 score: 52.5
IPR002885	Pentatricopeptide repeat	PFAM	PF13812	PPR_3	coord: 416..476 e-value: 8.3E-7 score: 29.0 coord: 170..228 e-value: 2.5E-15 score: 56.3 coord: 241..301 e-value: 1.7E-12 score: 47.2 coord: 489..543 e-value: 1.6E-4 score: 21.7 coord: 373..406 e-value: 0.0077 score: 16.3
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 568..602 score: 9.470621
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 358..392 score: 11.936913
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 428..462 score: 10.687325
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 182..216 score: 12.649398
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 253..287 score: 12.58363
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 323..357 score: 13.372844
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 217..252 score: 11.279235
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 147..181 score: 10.533867
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 533..567 score: 10.939435
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 498..532 score: 9.591195
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 603..637 score: 10.796938
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 393..427 score: 10.621557
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 288..322 score: 10.435215
IPR011990	Tetratricopeptide-like helical domain superfamily	GENE3D	1.25.40.10	Tetratricopeptide repeat domain	coord: 559..635 e-value: 2.0E-15 score: 58.8
IPR011990	Tetratricopeptide-like helical domain superfamily	GENE3D	1.25.40.10	Tetratricopeptide repeat domain	coord: 443..558 e-value: 1.4E-22 score: 82.5
IPR011990	Tetratricopeptide-like helical domain superfamily	GENE3D	1.25.40.10	Tetratricopeptide repeat domain	coord: 93..233 e-value: 3.9E-37 score: 129.4
IPR011990	Tetratricopeptide-like helical domain superfamily	GENE3D	1.25.40.10	Tetratricopeptide repeat domain	coord: 234..390 e-value: 8.5E-47 score: 162.0
None	No IPR available	PANTHER	PTHR47937:SF1	PLASTID TRANSCRIPTIONALLY ACTIVE CHROMOSOME 2-LIKE PROTEIN	coord: 43..724
None	No IPR available	PANTHER	PTHR47937	PLASTID TRANSCRIPTIONALLY ACTIVE CHROMOSOME 2-LIKE PROTEIN	coord: 43..724

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0019903.1	Sed0019903.1	mRNA
Sed0019903.2	Sed0019903.2	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0042793	plastid transcription
biological_process	GO:0045893	positive regulation of transcription, DNA-templated
cellular_component	GO:0009507	chloroplast
molecular_function	GO:0005515	protein binding