Sed0019857 (gene) Chayote v1

Overview
NameSed0019857
Typegene
OrganismSechium edule (Chayote v1)
DescriptionPathogen-induced protein CuPi1
LocationLG04: 42971517 .. 42972711 (-)
RNA-Seq ExpressionSed0019857
SyntenySed0019857
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
GGGAAAGCCAATATCCTCCAAACAAAATTTGAAACATTTTGTAAGAAAGAAAGTAATTGAAAATGAGAGGTTGGAAGAGTTTTGGGAATTTGTTCAGTTTGTTACTATTTGCCATCCTCCTCATCTCCTCCCAGGTGGCTGCAGCAAGGAACTTGCCCCAAAACAGCTGTGAGTTTCCACTTTATAATTCTACACAAATATATTTCATATTGAGTATAGTTGTTTGTTTGTGCATAGGAAATATGTAGGGTTTAAATTCATGAAAACTAACATTTAGGTCATTGAGTTTATAATAATAATAAGAGAATTTTCCCTCCGTAACATATTTTTGGCTCTTCATTACAATTATAGCACATTTTTTAAAAATAATTTCATCCATAACACATTTTACCCGAAATTACTATTCTAACATCATTAGAATTCTAAGACTTTAGACTTCTATCACTTCAACCAATAGATTTCTATCAGTTCAACTGATAGACTTTAGACTTCTATTAGTTCAACTCATAAATTTCAATCGATTTTGAGTGATTGGACAATACAATTGATAGATTTCAATCATTTTTGTGCCACAAATAAATAAGTTTGGGAATTGTGCTATGCATGAAATTATTATTATTATATTTTAATATACATGCAAAATCCTCTAATAATAATAATAATTGTTTAATTTTAAAAAAGTTAAAGAGAATTTATTTGAATGGTTTGCAGATTCGCCTGTCACTGGCAGAACAGGAAACCGAAAGAAGCCCATCTGCGATGGAAAAGGGCCTTATAATAGCTGCATCGGGCGCAAGAGACCAATACATGAAAAATGCGATCCCTATCGTCGTAATTGCCCACCCTCGGCTGCACACTTGCCCCAACCTTAAATTCTCATCTTAAAAACTACCATTAATTAAATAATGAATAAATGACCTTTTTCAATATCTCTACTTTTGTATTACTTATTAAACATCCTTTCAAGTGGATTTTCATCCTCAAGTCATATGTTGAAGCAGCTATTTGGTAGAAGCGCCTCTAAACAAGGGCGGGATCTAATGATGCACAACATAACATGGTCGATGTTTTGGTGATGGTGAAAAAAGCAAAATGGGTGTACTTTTGTGTAATATTTCAAAGATTATGATGTAGCCACTTCGCAGCTCTTTCGTGTTCTAAATCTAATATTTACATAGATTATGATAAAACCAAC

mRNA sequence

GGGAAAGCCAATATCCTCCAAACAAAATTTGAAACATTTTGTAAGAAAGAAAGTAATTGAAAATGAGAGGTTGGAAGAGTTTTGGGAATTTGTTCAGTTTGTTACTATTTGCCATCCTCCTCATCTCCTCCCAGGTGGCTGCAGCAAGGAACTTGCCCCAAAACAGCTATTCGCCTGTCACTGGCAGAACAGGAAACCGAAAGAAGCCCATCTGCGATGGAAAAGGGCCTTATAATAGCTGCATCGGGCGCAAGAGACCAATACATGAAAAATGCGATCCCTATCGTCGTAATTGCCCACCCTCGGCTGCACACTTGCCCCAACCTTAAATTCTCATCTTAAAAACTACCATTAATTAAATAATGAATAAATGACCTTTTTCAATATCTCTACTTTTGTATTACTTATTAAACATCCTTTCAAGTGGATTTTCATCCTCAAGTCATATGTTGAAGCAGCTATTTGGTAGAAGCGCCTCTAAACAAGGGCGGGATCTAATGATGCACAACATAACATGGTCGATGTTTTGGTGATGGTGAAAAAAGCAAAATGGGTGTACTTTTGTGTAATATTTCAAAGATTATGATGTAGCCACTTCGCAGCTCTTTCGTGTTCTAAATCTAATATTTACATAGATTATGATAAAACCAAC

Coding sequence (CDS)

ATGAGAGGTTGGAAGAGTTTTGGGAATTTGTTCAGTTTGTTACTATTTGCCATCCTCCTCATCTCCTCCCAGGTGGCTGCAGCAAGGAACTTGCCCCAAAACAGCTATTCGCCTGTCACTGGCAGAACAGGAAACCGAAAGAAGCCCATCTGCGATGGAAAAGGGCCTTATAATAGCTGCATCGGGCGCAAGAGACCAATACATGAAAAATGCGATCCCTATCGTCGTAATTGCCCACCCTCGGCTGCACACTTGCCCCAACCTTAA

Protein sequence

MRGWKSFGNLFSLLLFAILLISSQVAAARNLPQNSYSPVTGRTGNRKKPICDGKGPYNSCIGRKRPIHEKCDPYRRNCPPSAAHLPQP
Homology
[Close]
BLAST of Sed0019857 vs. NCBI nr
Match: XP_004144528.1 (uncharacterized protein LOC101208804 [Cucumis sativus] >AAB71340.1 pathogen-induced protein CuPi1 [Cucumis sativus] >KGN43457.1 hypothetical protein Csa_020505 [Cucumis sativus])

HSP 1 Score: 68.9 bits (167), Expect = 2.4e-08
Identity = 35/75 (46.67%), Postives = 45/75 (60.00%), Query Frame = 0 

Query: 9  NLFSLLLFAILLISSQVAAARNLPQNSYSP-----VTGRTGNRKKPICDGKGPYNSCIGR 68
          +L +   F +L ISS+V AAR L  +  +      +T RT  R KPICDG GPY+ CI R
Sbjct: 10 SLLAFFFFFVLFISSEVTAARKLKMHQNNEKGIVYLTPRTAIRNKPICDGSGPYSRCIPR 69

Query: 69 KRPIHEKCDPYRRNC 79
           +P  EKC+PY R C
Sbjct: 70 SKPPKEKCNPYVRGC 84

[Close]
BLAST of Sed0019857 vs. ExPASy TrEMBL
Match: O24512 (Pathogen-induced protein CuPi1 OS=Cucumis sativus OX=3659 GN=Csa_7G037610 PE=2 SV=1)

HSP 1 Score: 68.9 bits (167), Expect = 1.2e-08
Identity = 35/75 (46.67%), Postives = 45/75 (60.00%), Query Frame = 0 

Query: 9  NLFSLLLFAILLISSQVAAARNLPQNSYSP-----VTGRTGNRKKPICDGKGPYNSCIGR 68
          +L +   F +L ISS+V AAR L  +  +      +T RT  R KPICDG GPY+ CI R
Sbjct: 10 SLLAFFFFFVLFISSEVTAARKLKMHQNNEKGIVYLTPRTAIRNKPICDGSGPYSRCIPR 69

Query: 69 KRPIHEKCDPYRRNC 79
           +P  EKC+PY R C
Sbjct: 70 SKPPKEKCNPYVRGC 84

[Close]
BLAST of Sed0019857 vs. ExPASy TrEMBL
Match: A0A5N6QZH8 (Uncharacterized protein OS=Carpinus fangiana OX=176857 GN=FH972_007962 PE=4 SV=1)

HSP 1 Score: 53.1 bits (126), Expect = 6.7e-04
Identity = 35/75 (46.67%), Postives = 41/75 (54.67%), Query Frame = 0 

Query: 10 LFSLLLFAILLISSQVAAARNLPQNSYSPVTGRTGNRKKPICDGKGP---YNSCIGRKRP 69
          L  LLL + L I S V +AR L     SPVTG T N K+P     GP   Y SCI  K P
Sbjct: 6  LICLLLVSTLFIPSSV-SARELADKP-SPVTGGTKNPKRPAVPSCGPGASYKSCIPSKSP 65

Query: 70 IHEKCDPYRRNCPPS 82
              C+ Y+RNCPP+
Sbjct: 66 PKSSCNRYKRNCPPA 78

The following BLAST results are available for this feature:
BLAST of Sed0019857 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_004144528.12.4e-0846.67uncharacterized protein LOC101208804 [Cucumis sativus] >AAB71340.1 pathogen-indu... [more]
BLAST of Sed0019857 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Sed0019857 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
O245121.2e-0846.67Pathogen-induced protein CuPi1 OS=Cucumis sativus OX=3659 GN=Csa_7G037610 PE=2 S... [more]
A0A5N6QZH86.7e-0446.67Uncharacterized protein OS=Carpinus fangiana OX=176857 GN=FH972_007962 PE=4 SV=1[more]
BLAST of Sed0019857 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Sed0019857.1Sed0019857.1mRNA