Sed0019818 (gene) Chayote v1

Overview


Name	Sed0019818
Type	gene
Organism	Sechium edule (Chayote v1)
Description	Reverse transcriptase
Location	LG03: 40964088 .. 40964716 (-)
RNA-Seq Expression	Sed0019818
Synteny	Sed0019818

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTGAGAGCTTGTGTGTTGGATTTCCGGGCACCGGGACCAGATTCAGATTCGATGGAGTTTGCCTACAACAACGATTATCGATCACGACGATTCGAGATGGCCCCATTCGAGGCTTTGTATGGTAAGCGTTGTCGGTCCCCGTGTTCAGGGAAGAGGTTGGAGATAGGCGGTTTTTGGGTCCCGAGTTGCTTTGCAGCTTGACTAATGGAGCAAAGGTCACGAAAGATTAAAGCTCGTATGTTGACAAAATCGAGCAGTGAGAAAAAATTACGCCCGATGTTCGGCGTCAGGATTTGGAGTTTGAGGTTGGTCAGCATGTGTTCTTAAAGGTTGCTTCGATGCGAGGTGTTTTGAGGTTCGGTAAGCGAGGGAAGTTGAGTCCCTGTTTTGTTGGTCCGTTTGAGATTCTGGAGAGGATTGGCAGAGTTGCTTATCGGTTAGCTCTACCTCCGTCGTTGTCAGCGGATTGCACAAAGCAGCTTCATGTATCGATGTTGAGGCAGTATGTGCCGGACCCGTCGCACATTGTGGACTTTGAGCCTTTGCAGCTGAATGAGGATTTGAGCTTCGAGGAGAAGCCAGTGGGGATCCTTGCATTTGAGACAAAGACGTTGCGTAATCGCTAG

mRNA sequence

ATGTTGAGAGCTTGTGTGTTGGATTTCCGGGCACCGGGACCAGATTCAGATTCGATGGAGTTTGCCTACAACAACGATTATCGATCACGACGATTCGAGATGGCCCCATTCGAGGCTTTGTATGCGTTGTCGGTCCCCGTGTTCAGGGAAGAGGTTGGAGATAGGCGGTTTTTGGGTCCCGAGTTGCTTTGCAGCTTGACTAATGGAGCAAAGGATTTGGAGTTTGAGGTTGGTCAGCATGTGTTCTTAAAGGTTGCTTCGATGCGAGGTGTTTTGAGGTTCGGTAAGCGAGGGAAGTTGAGTCCCTGTTTTGTTGGTCCGTTTGAGATTCTGGAGAGGATTGGCAGAGTTGCTTATCGGTTAGCTCTACCTCCGTCGTTGTCAGCGGATTGCACAAAGCAGCTTCATGTATCGATGTTGAGGCAGTATGTGCCGGACCCGTCGCACATTGTGGACTTTGAGCCTTTGCAGCTGAATGAGGATTTGAGCTTCGAGGAGAAGCCAGTGGGGATCCTTGCATTTGAGACAAAGACGTTGCGTAATCGCTAG

Coding sequence (CDS)

ATGTTGAGAGCTTGTGTGTTGGATTTCCGGGCACCGGGACCAGATTCAGATTCGATGGAGTTTGCCTACAACAACGATTATCGATCACGACGATTCGAGATGGCCCCATTCGAGGCTTTGTATGCGTTGTCGGTCCCCGTGTTCAGGGAAGAGGTTGGAGATAGGCGGTTTTTGGGTCCCGAGTTGCTTTGCAGCTTGACTAATGGAGCAAAGGATTTGGAGTTTGAGGTTGGTCAGCATGTGTTCTTAAAGGTTGCTTCGATGCGAGGTGTTTTGAGGTTCGGTAAGCGAGGGAAGTTGAGTCCCTGTTTTGTTGGTCCGTTTGAGATTCTGGAGAGGATTGGCAGAGTTGCTTATCGGTTAGCTCTACCTCCGTCGTTGTCAGCGGATTGCACAAAGCAGCTTCATGTATCGATGTTGAGGCAGTATGTGCCGGACCCGTCGCACATTGTGGACTTTGAGCCTTTGCAGCTGAATGAGGATTTGAGCTTCGAGGAGAAGCCAGTGGGGATCCTTGCATTTGAGACAAAGACGTTGCGTAATCGCTAG

Protein sequence

MLRACVLDFRAPGPDSDSMEFAYNNDYRSRRFEMAPFEALYALSVPVFREEVGDRRFLGPELLCSLTNGAKDLEFEVGQHVFLKVASMRGVLRFGKRGKLSPCFVGPFEILERIGRVAYRLALPPSLSADCTKQLHVSMLRQYVPDPSHIVDFEPLQLNEDLSFEEKPVGILAFETKTLRNR

Homology

[Close]

BLAST of Sed0019818 vs. NCBI nr
Match: KAA0051522.1 (ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 210.3 bits (534), Expect = 1.4e-50
Identity = 123/210 (58.57%), Postives = 143/210 (68.10%), Query Frame = 0


Query: 1    MLRACVLDFRAPGP-DS--DSMEFAYNNDYRSRRFEMAPFEALY--ALSVPVFREEVGDR 60
            MLRAC L+F  PG  DS    MEFAYNN Y++    M PFEALY      PV+  EVG++
Sbjct: 1261 MLRACALEF--PGSWDSHLHLMEFAYNNSYQA-TIGMTPFEALYGKCCRSPVYWGEVGEQ 1320

Query: 61   RFLGPELLCSLTNGA-----------------------KDLEFEVGQHVFLKVASMRGVL 120
            R +GPEL+ S TN A                       KDLEFEVG  VFLKVA MRGVL
Sbjct: 1321 RLMGPELVQS-TNEAIQKIRSCMHTAQNRQKSYADVRRKDLEFEVGDKVFLKVAPMRGVL 1380

Query: 121  RFGKRGKLSPCFVGPFEILERIGRVAYRLALPPSLSADCTKQLHVSMLRQYVPDPSHIVD 180
            RF +RGKLSP FVGPFE+LERIG VAYRLALPPSLS       HVSMLR+YVPDPSH+VD
Sbjct: 1381 RFERRGKLSPHFVGPFEVLERIGPVAYRLALPPSLST-VHDVFHVSMLRKYVPDPSHVVD 1440

Query: 181  FEPLQLNEDLSFEEKPVGILAFETKTLRNR 183
            +EPL+++E+LS+ E+PVG+LA E K LRNR
Sbjct: 1441 YEPLEIDENLSYTEQPVGVLAREVKVLRNR 1465

[Close]

BLAST of Sed0019818 vs. NCBI nr
Match: KAA0043669.1 (pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 209.5 bits (532), Expect = 2.4e-50
Identity = 124/212 (58.49%), Postives = 145/212 (68.40%), Query Frame = 0


Query: 1   MLRACVLDFRAPGPDS-DS----MEFAYNNDYRSRRFEMAPFEALY--ALSVPVFREEVG 60
           MLRAC L+F    PDS DS    MEFAYNN Y++    MAPFEALY      PV  +EVG
Sbjct: 313 MLRACALEF----PDSWDSHLHLMEFAYNNSYQA-TIGMAPFEALYGRCCRSPVCWDEVG 372

Query: 61  DRRFLGPELLCSLTNGA-----------------------KDLEFEVGQHVFLKVASMRG 120
           ++R +GPEL+ S TN A                       KDLEFEVG  VFLKVA M+G
Sbjct: 373 EQRLMGPELVQS-TNEAVQKIRSRMHTAQSRQKSYADVRRKDLEFEVGDKVFLKVAPMKG 432

Query: 121 VLRFGKRGKLSPCFVGPFEILERIGRVAYRLALPPSLSADCTKQLHVSMLRQYVPDPSHI 180
           VLRF +RGKLSP FVGPFEILERIG VAYRLALPPSLS       HVSMLR+YVPDPSH+
Sbjct: 433 VLRFERRGKLSPRFVGPFEILERIGPVAYRLALPPSLST-VHDVFHVSMLRKYVPDPSHV 492

Query: 181 VDFEPLQLNEDLSFEEKPVGILAFETKTLRNR 183
           VD+EPL+++E+LS+ E+PV +LA E KTLRN+
Sbjct: 493 VDYEPLEIDENLSYVERPVEVLAREVKTLRNK 517

[Close]

BLAST of Sed0019818 vs. NCBI nr
Match: KAA0060848.1 (pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 209.5 bits (532), Expect = 2.4e-50
Identity = 124/210 (59.05%), Postives = 144/210 (68.57%), Query Frame = 0


Query: 1   MLRACVLDFRAPGP-DS--DSMEFAYNNDYRSRRFEMAPFEALY--ALSVPVFREEVGDR 60
           MLRAC L+F  PG  DS    MEFAYNN Y++    MAPFEALY      PV  +EVG++
Sbjct: 313 MLRACALEF--PGSWDSHLHLMEFAYNNSYQA-TIGMAPFEALYGKCCRSPVCWDEVGEQ 372

Query: 61  RFLGPELLCSLTNGA-----------------------KDLEFEVGQHVFLKVASMRGVL 120
           R +GPEL+ S TN A                       KDLEFEVG  VFLKVA MRGVL
Sbjct: 373 RLMGPELVQS-TNEAIQKIRSRMHTAQSRQKSYADVRRKDLEFEVGDKVFLKVAPMRGVL 432

Query: 121 RFGKRGKLSPCFVGPFEILERIGRVAYRLALPPSLSADCTKQLHVSMLRQYVPDPSHIVD 180
           RF KRGKLSP FVGPFEILERIG VAYRLALPPSL+       HVSMLR+YVPDPSH+VD
Sbjct: 433 RFEKRGKLSPRFVGPFEILERIGPVAYRLALPPSLTT-AHDVFHVSMLRKYVPDPSHVVD 492

Query: 181 FEPLQLNEDLSFEEKPVGILAFETKTLRNR 183
           +EPL+++E++S+ E+PV ILA E KTLRN+
Sbjct: 493 YEPLEIDENMSYTEQPVEILAREVKTLRNK 517

[Close]

BLAST of Sed0019818 vs. NCBI nr
Match: TYK03215.1 (ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 208.8 bits (530), Expect = 4.1e-50
Identity = 120/201 (59.70%), Postives = 142/201 (70.65%), Query Frame = 0


Query: 1    MLRACVLDFRAPGPDS-DS----MEFAYNNDYRSRRFEMAPFEALY--ALSVPVFREEVG 60
            MLRAC L+F    PDS DS    MEFAYNN +++    MAPFEALY      PV   EVG
Sbjct: 1142 MLRACALEF----PDSWDSHLHLMEFAYNNSFQA-TIRMAPFEALYDKCCRSPVCWGEVG 1201

Query: 61   DRRFLGPELL------------CSLTNGAKDLEFEVGQHVFLKVASMRGVLRFGKRGKLS 120
            ++R +GPEL+            C LT   +DLEF+VG  VFLKVA M+GVLRF KRGKLS
Sbjct: 1202 EQRLMGPELVQSTNEAIQKIRSCMLT-ARRDLEFDVGDKVFLKVAPMKGVLRFEKRGKLS 1261

Query: 121  PCFVGPFEILERIGRVAYRLALPPSLSADCTKQLHVSMLRQYVPDPSHIVDFEPLQLNED 180
            P FVGPFEILERIG VAYRLALPPSLS       HVSMLR+YVPDPSH++D+EPL+++E+
Sbjct: 1262 PRFVGPFEILERIGPVAYRLALPPSLST-VHDVFHVSMLRKYVPDPSHVMDYEPLEIDEN 1321

Query: 181  LSFEEKPVGILAFETKTLRNR 183
            LS+ E+PV +LA E K LRNR
Sbjct: 1322 LSYTEQPVEVLAREVKMLRNR 1335

[Close]

BLAST of Sed0019818 vs. NCBI nr
Match: KAA0046937.1 (ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 208.8 bits (530), Expect = 4.1e-50
Identity = 120/201 (59.70%), Postives = 142/201 (70.65%), Query Frame = 0


Query: 1    MLRACVLDFRAPGPDS-DS----MEFAYNNDYRSRRFEMAPFEALY--ALSVPVFREEVG 60
            MLRAC L+F    PDS DS    MEFAYNN +++    MAPFEALY      PV   EVG
Sbjct: 1598 MLRACALEF----PDSWDSHLHLMEFAYNNSFQA-TIRMAPFEALYDKCCRSPVCWGEVG 1657

Query: 61   DRRFLGPELL------------CSLTNGAKDLEFEVGQHVFLKVASMRGVLRFGKRGKLS 120
            ++R +GPEL+            C LT   +DLEF+VG  VFLKVA M+GVLRF KRGKLS
Sbjct: 1658 EQRLMGPELVQSTNEAIQKIRSCMLT-ARRDLEFDVGDKVFLKVAPMKGVLRFEKRGKLS 1717

Query: 121  PCFVGPFEILERIGRVAYRLALPPSLSADCTKQLHVSMLRQYVPDPSHIVDFEPLQLNED 180
            P FVGPFEILERIG VAYRLALPPSLS       HVSMLR+YVPDPSH++D+EPL+++E+
Sbjct: 1718 PRFVGPFEILERIGPVAYRLALPPSLST-VHDVFHVSMLRKYVPDPSHVMDYEPLEIDEN 1777

Query: 181  LSFEEKPVGILAFETKTLRNR 183
            LS+ E+PV +LA E K LRNR
Sbjct: 1778 LSYTEQPVEVLAREVKMLRNR 1791

[Close]

BLAST of Sed0019818 vs. ExPASy Swiss-Prot
Match: Q9UR07 (Transposon Tf2-11 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=Tf2-11 PE=3 SV=1)

HSP 1 Score: 49.7 bits (117), Expect = 4.1e-05
Identity = 44/145 (30.34%), Postives = 65/145 (44.83%), Query Frame = 0


Query: 22   AYNNDYRSRRFEMAPFE-------ALYALSVPVFREEVGDRRFLGPELLCSL-----TNG 81
            +YNN   S   +M PFE       AL  L +P F ++  +      ++  ++     TN 
Sbjct: 1117 SYNNAIHSAT-QMTPFEIVHRYSPALSPLELPSFSDKTDENSQETIQVFQTVKEHLNTNN 1176

Query: 82   AK-----DL------EFEVGQHVFLKVASMRGVLRFGKRGKLSPCFVGPFEILERIGRVA 141
             K     D+      EF+ G  V +K  +  G L   K  KL+P F GPF +L++ G   
Sbjct: 1177 IKMKKYFDMKIQEIEEFQPGDLVMVK-RTKTGFLH--KSNKLAPSFAGPFYVLQKSGPNN 1236

Query: 142  YRLALPPSLSADCTKQLHVSMLRQY 144
            Y L LP S+    +   HVS L +Y
Sbjct: 1237 YELDLPDSIKHMFSSTFHVSHLEKY 1257

[Close]

BLAST of Sed0019818 vs. ExPASy Swiss-Prot
Match: P0CT41 (Transposon Tf2-12 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=Tf2-12 PE=3 SV=1)

HSP 1 Score: 49.7 bits (117), Expect = 4.1e-05
Identity = 44/145 (30.34%), Postives = 65/145 (44.83%), Query Frame = 0


Query: 22   AYNNDYRSRRFEMAPFE-------ALYALSVPVFREEVGDRRFLGPELLCSL-----TNG 81
            +YNN   S   +M PFE       AL  L +P F ++  +      ++  ++     TN 
Sbjct: 1117 SYNNAIHSAT-QMTPFEIVHRYSPALSPLELPSFSDKTDENSQETIQVFQTVKEHLNTNN 1176

Query: 82   AK-----DL------EFEVGQHVFLKVASMRGVLRFGKRGKLSPCFVGPFEILERIGRVA 141
             K     D+      EF+ G  V +K  +  G L   K  KL+P F GPF +L++ G   
Sbjct: 1177 IKMKKYFDMKIQEIEEFQPGDLVMVK-RTKTGFLH--KSNKLAPSFAGPFYVLQKSGPNN 1236

Query: 142  YRLALPPSLSADCTKQLHVSMLRQY 144
            Y L LP S+    +   HVS L +Y
Sbjct: 1237 YELDLPDSIKHMFSSTFHVSHLEKY 1257

[Close]

BLAST of Sed0019818 vs. ExPASy Swiss-Prot
Match: P0CT34 (Transposon Tf2-1 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=Tf2-1 PE=3 SV=1)

HSP 1 Score: 49.7 bits (117), Expect = 4.1e-05
Identity = 44/145 (30.34%), Postives = 65/145 (44.83%), Query Frame = 0


Query: 22   AYNNDYRSRRFEMAPFE-------ALYALSVPVFREEVGDRRFLGPELLCSL-----TNG 81
            +YNN   S   +M PFE       AL  L +P F ++  +      ++  ++     TN 
Sbjct: 1117 SYNNAIHSAT-QMTPFEIVHRYSPALSPLELPSFSDKTDENSQETIQVFQTVKEHLNTNN 1176

Query: 82   AK-----DL------EFEVGQHVFLKVASMRGVLRFGKRGKLSPCFVGPFEILERIGRVA 141
             K     D+      EF+ G  V +K  +  G L   K  KL+P F GPF +L++ G   
Sbjct: 1177 IKMKKYFDMKIQEIEEFQPGDLVMVK-RTKTGFLH--KSNKLAPSFAGPFYVLQKSGPNN 1236

Query: 142  YRLALPPSLSADCTKQLHVSMLRQY 144
            Y L LP S+    +   HVS L +Y
Sbjct: 1237 YELDLPDSIKHMFSSTFHVSHLEKY 1257

[Close]

BLAST of Sed0019818 vs. ExPASy Swiss-Prot
Match: P0CT35 (Transposon Tf2-2 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=Tf2-2 PE=3 SV=1)

HSP 1 Score: 49.7 bits (117), Expect = 4.1e-05
Identity = 44/145 (30.34%), Postives = 65/145 (44.83%), Query Frame = 0


Query: 22   AYNNDYRSRRFEMAPFE-------ALYALSVPVFREEVGDRRFLGPELLCSL-----TNG 81
            +YNN   S   +M PFE       AL  L +P F ++  +      ++  ++     TN 
Sbjct: 1117 SYNNAIHSAT-QMTPFEIVHRYSPALSPLELPSFSDKTDENSQETIQVFQTVKEHLNTNN 1176

Query: 82   AK-----DL------EFEVGQHVFLKVASMRGVLRFGKRGKLSPCFVGPFEILERIGRVA 141
             K     D+      EF+ G  V +K  +  G L   K  KL+P F GPF +L++ G   
Sbjct: 1177 IKMKKYFDMKIQEIEEFQPGDLVMVK-RTKTGFLH--KSNKLAPSFAGPFYVLQKSGPNN 1236

Query: 142  YRLALPPSLSADCTKQLHVSMLRQY 144
            Y L LP S+    +   HVS L +Y
Sbjct: 1237 YELDLPDSIKHMFSSTFHVSHLEKY 1257

[Close]

BLAST of Sed0019818 vs. ExPASy Swiss-Prot
Match: P0CT36 (Transposon Tf2-3 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=Tf2-3 PE=1 SV=1)

HSP 1 Score: 49.7 bits (117), Expect = 4.1e-05
Identity = 44/145 (30.34%), Postives = 65/145 (44.83%), Query Frame = 0


Query: 22   AYNNDYRSRRFEMAPFE-------ALYALSVPVFREEVGDRRFLGPELLCSL-----TNG 81
            +YNN   S   +M PFE       AL  L +P F ++  +      ++  ++     TN 
Sbjct: 1117 SYNNAIHSAT-QMTPFEIVHRYSPALSPLELPSFSDKTDENSQETIQVFQTVKEHLNTNN 1176

Query: 82   AK-----DL------EFEVGQHVFLKVASMRGVLRFGKRGKLSPCFVGPFEILERIGRVA 141
             K     D+      EF+ G  V +K  +  G L   K  KL+P F GPF +L++ G   
Sbjct: 1177 IKMKKYFDMKIQEIEEFQPGDLVMVK-RTKTGFLH--KSNKLAPSFAGPFYVLQKSGPNN 1236

Query: 142  YRLALPPSLSADCTKQLHVSMLRQY 144
            Y L LP S+    +   HVS L +Y
Sbjct: 1237 YELDLPDSIKHMFSSTFHVSHLEKY 1257

[Close]

BLAST of Sed0019818 vs. ExPASy TrEMBL
Match: A0A5A7U6Z4 (Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold174G00460 PE=4 SV=1)

HSP 1 Score: 210.3 bits (534), Expect = 6.7e-51
Identity = 123/210 (58.57%), Postives = 143/210 (68.10%), Query Frame = 0


Query: 1    MLRACVLDFRAPGP-DS--DSMEFAYNNDYRSRRFEMAPFEALY--ALSVPVFREEVGDR 60
            MLRAC L+F  PG  DS    MEFAYNN Y++    M PFEALY      PV+  EVG++
Sbjct: 1261 MLRACALEF--PGSWDSHLHLMEFAYNNSYQA-TIGMTPFEALYGKCCRSPVYWGEVGEQ 1320

Query: 61   RFLGPELLCSLTNGA-----------------------KDLEFEVGQHVFLKVASMRGVL 120
            R +GPEL+ S TN A                       KDLEFEVG  VFLKVA MRGVL
Sbjct: 1321 RLMGPELVQS-TNEAIQKIRSCMHTAQNRQKSYADVRRKDLEFEVGDKVFLKVAPMRGVL 1380

Query: 121  RFGKRGKLSPCFVGPFEILERIGRVAYRLALPPSLSADCTKQLHVSMLRQYVPDPSHIVD 180
            RF +RGKLSP FVGPFE+LERIG VAYRLALPPSLS       HVSMLR+YVPDPSH+VD
Sbjct: 1381 RFERRGKLSPHFVGPFEVLERIGPVAYRLALPPSLST-VHDVFHVSMLRKYVPDPSHVVD 1440

Query: 181  FEPLQLNEDLSFEEKPVGILAFETKTLRNR 183
            +EPL+++E+LS+ E+PVG+LA E K LRNR
Sbjct: 1441 YEPLEIDENLSYTEQPVGVLAREVKVLRNR 1465

[Close]

BLAST of Sed0019818 vs. ExPASy TrEMBL
Match: A0A5A7TR61 (Pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold19461G00010 PE=4 SV=1)

HSP 1 Score: 209.5 bits (532), Expect = 1.1e-50
Identity = 124/212 (58.49%), Postives = 145/212 (68.40%), Query Frame = 0


Query: 1   MLRACVLDFRAPGPDS-DS----MEFAYNNDYRSRRFEMAPFEALY--ALSVPVFREEVG 60
           MLRAC L+F    PDS DS    MEFAYNN Y++    MAPFEALY      PV  +EVG
Sbjct: 313 MLRACALEF----PDSWDSHLHLMEFAYNNSYQA-TIGMAPFEALYGRCCRSPVCWDEVG 372

Query: 61  DRRFLGPELLCSLTNGA-----------------------KDLEFEVGQHVFLKVASMRG 120
           ++R +GPEL+ S TN A                       KDLEFEVG  VFLKVA M+G
Sbjct: 373 EQRLMGPELVQS-TNEAVQKIRSRMHTAQSRQKSYADVRRKDLEFEVGDKVFLKVAPMKG 432

Query: 121 VLRFGKRGKLSPCFVGPFEILERIGRVAYRLALPPSLSADCTKQLHVSMLRQYVPDPSHI 180
           VLRF +RGKLSP FVGPFEILERIG VAYRLALPPSLS       HVSMLR+YVPDPSH+
Sbjct: 433 VLRFERRGKLSPRFVGPFEILERIGPVAYRLALPPSLST-VHDVFHVSMLRKYVPDPSHV 492

Query: 181 VDFEPLQLNEDLSFEEKPVGILAFETKTLRNR 183
           VD+EPL+++E+LS+ E+PV +LA E KTLRN+
Sbjct: 493 VDYEPLEIDENLSYVERPVEVLAREVKTLRNK 517

[Close]

BLAST of Sed0019818 vs. ExPASy TrEMBL
Match: A0A5A7UZZ4 (Pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold137G00810 PE=4 SV=1)

HSP 1 Score: 209.5 bits (532), Expect = 1.1e-50
Identity = 124/210 (59.05%), Postives = 144/210 (68.57%), Query Frame = 0


Query: 1   MLRACVLDFRAPGP-DS--DSMEFAYNNDYRSRRFEMAPFEALY--ALSVPVFREEVGDR 60
           MLRAC L+F  PG  DS    MEFAYNN Y++    MAPFEALY      PV  +EVG++
Sbjct: 313 MLRACALEF--PGSWDSHLHLMEFAYNNSYQA-TIGMAPFEALYGKCCRSPVCWDEVGEQ 372

Query: 61  RFLGPELLCSLTNGA-----------------------KDLEFEVGQHVFLKVASMRGVL 120
           R +GPEL+ S TN A                       KDLEFEVG  VFLKVA MRGVL
Sbjct: 373 RLMGPELVQS-TNEAIQKIRSRMHTAQSRQKSYADVRRKDLEFEVGDKVFLKVAPMRGVL 432

Query: 121 RFGKRGKLSPCFVGPFEILERIGRVAYRLALPPSLSADCTKQLHVSMLRQYVPDPSHIVD 180
           RF KRGKLSP FVGPFEILERIG VAYRLALPPSL+       HVSMLR+YVPDPSH+VD
Sbjct: 433 RFEKRGKLSPRFVGPFEILERIGPVAYRLALPPSLTT-AHDVFHVSMLRKYVPDPSHVVD 492

Query: 181 FEPLQLNEDLSFEEKPVGILAFETKTLRNR 183
           +EPL+++E++S+ E+PV ILA E KTLRN+
Sbjct: 493 YEPLEIDENMSYTEQPVEILAREVKTLRNK 517

[Close]

BLAST of Sed0019818 vs. ExPASy TrEMBL
Match: A0A5A7TYE6 (Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold230G001070 PE=4 SV=1)

HSP 1 Score: 208.8 bits (530), Expect = 2.0e-50
Identity = 120/201 (59.70%), Postives = 142/201 (70.65%), Query Frame = 0


Query: 1    MLRACVLDFRAPGPDS-DS----MEFAYNNDYRSRRFEMAPFEALY--ALSVPVFREEVG 60
            MLRAC L+F    PDS DS    MEFAYNN +++    MAPFEALY      PV   EVG
Sbjct: 1598 MLRACALEF----PDSWDSHLHLMEFAYNNSFQA-TIRMAPFEALYDKCCRSPVCWGEVG 1657

Query: 61   DRRFLGPELL------------CSLTNGAKDLEFEVGQHVFLKVASMRGVLRFGKRGKLS 120
            ++R +GPEL+            C LT   +DLEF+VG  VFLKVA M+GVLRF KRGKLS
Sbjct: 1658 EQRLMGPELVQSTNEAIQKIRSCMLT-ARRDLEFDVGDKVFLKVAPMKGVLRFEKRGKLS 1717

Query: 121  PCFVGPFEILERIGRVAYRLALPPSLSADCTKQLHVSMLRQYVPDPSHIVDFEPLQLNED 180
            P FVGPFEILERIG VAYRLALPPSLS       HVSMLR+YVPDPSH++D+EPL+++E+
Sbjct: 1718 PRFVGPFEILERIGPVAYRLALPPSLST-VHDVFHVSMLRKYVPDPSHVMDYEPLEIDEN 1777

Query: 181  LSFEEKPVGILAFETKTLRNR 183
            LS+ E+PV +LA E K LRNR
Sbjct: 1778 LSYTEQPVEVLAREVKMLRNR 1791

[Close]

BLAST of Sed0019818 vs. ExPASy TrEMBL
Match: A0A5D3BVX1 (Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold298G00270 PE=4 SV=1)

HSP 1 Score: 208.8 bits (530), Expect = 2.0e-50
Identity = 120/201 (59.70%), Postives = 142/201 (70.65%), Query Frame = 0


Query: 1    MLRACVLDFRAPGPDS-DS----MEFAYNNDYRSRRFEMAPFEALY--ALSVPVFREEVG 60
            MLRAC L+F    PDS DS    MEFAYNN +++    MAPFEALY      PV   EVG
Sbjct: 1142 MLRACALEF----PDSWDSHLHLMEFAYNNSFQA-TIRMAPFEALYDKCCRSPVCWGEVG 1201

Query: 61   DRRFLGPELL------------CSLTNGAKDLEFEVGQHVFLKVASMRGVLRFGKRGKLS 120
            ++R +GPEL+            C LT   +DLEF+VG  VFLKVA M+GVLRF KRGKLS
Sbjct: 1202 EQRLMGPELVQSTNEAIQKIRSCMLT-ARRDLEFDVGDKVFLKVAPMKGVLRFEKRGKLS 1261

Query: 121  PCFVGPFEILERIGRVAYRLALPPSLSADCTKQLHVSMLRQYVPDPSHIVDFEPLQLNED 180
            P FVGPFEILERIG VAYRLALPPSLS       HVSMLR+YVPDPSH++D+EPL+++E+
Sbjct: 1262 PRFVGPFEILERIGPVAYRLALPPSLST-VHDVFHVSMLRKYVPDPSHVMDYEPLEIDEN 1321

Query: 181  LSFEEKPVGILAFETKTLRNR 183
            LS+ E+PV +LA E K LRNR
Sbjct: 1322 LSYTEQPVEVLAREVKMLRNR 1335

The following BLAST results are available for this feature:

BLAST of Sed0019818 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0051522.1	1.4e-50	58.57	ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]	[more]
KAA0043669.1	2.4e-50	58.49	pol protein [Cucumis melo var. makuwa]	[more]
KAA0060848.1	2.4e-50	59.05	pol protein [Cucumis melo var. makuwa]	[more]
TYK03215.1	4.1e-50	59.70	ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]	[more]
KAA0046937.1	4.1e-50	59.70	ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]	[more]

BLAST of Sed0019818 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9UR07	4.1e-05	30.34	Transposon Tf2-11 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24...	[more]
P0CT41	4.1e-05	30.34	Transposon Tf2-12 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24...	[more]
P0CT34	4.1e-05	30.34	Transposon Tf2-1 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 248...	[more]
P0CT35	4.1e-05	30.34	Transposon Tf2-2 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 248...	[more]
P0CT36	4.1e-05	30.34	Transposon Tf2-3 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 248...	[more]

BLAST of Sed0019818 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7U6Z4	6.7e-51	58.57	Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C2...	[more]
A0A5A7TR61	1.1e-50	58.49	Pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold19461G00010 ...	[more]
A0A5A7UZZ4	1.1e-50	59.05	Pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold137G00810 PE...	[more]
A0A5A7TYE6	2.0e-50	59.70	Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C2...	[more]
A0A5D3BVX1	2.0e-50	59.70	Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567...	[more]

BLAST of Sed0019818 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR46148	FAMILY NOT NAMED	coord: 1..173
None	No IPR available	PANTHER	PTHR46148:SF18	IPP TRANSFERASE	coord: 1..173

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0019818.1	Sed0019818.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006259	DNA metabolic process
molecular_function	GO:0005488	binding
molecular_function	GO:0004518	nuclease activity
molecular_function	GO:0016779	nucleotidyltransferase activity