Sed0019764 (gene) Chayote v1

Overview


Name	Sed0019764
Type	gene
Organism	Sechium edule (Chayote v1)
Description	Unknown protein
Location	LG09: 36278565 .. 36278882 (-)
RNA-Seq Expression	Sed0019764
Synteny	Sed0019764

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexonpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCCTCCAATCAAATCCATCCTTTTCATAGCTCTTCTCTTGCTCTCTCAATCTTCTTCCGCCGCCGTTCACGACGGCGCTCCCACATCACTCGCCGGAATCCTTCACCGGAGCACCCTTCAGACGGCTGGCAACAATGAAGTTGCAGAGAATTACAATGGAGAATACTCTTTCGAACAAAAAGTCCGAAGGCGGCGACGGCGATCGGTAAGGAGAGCGGAAGGCCCGAGCCCTTCGGCGGGGAGTCGGAGCCGAACGACGTCGTTTGGTGTTGGTTCTTTGATGTGTATCTCTATTGTTTTTGGTTTGTTTGTGTAA

mRNA sequence

ATGCCTCCAATCAAATCCATCCTTTTCATAGCTCTTCTCTTGCTCTCTCAATCTTCTTCCGCCGCCGTTCACGACGGCGCTCCCACATCACTCGCCGGAATCCTTCACCGGAGCACCCTTCAGACGGCTGGCAACAATGAAGTTGCAGAGAATTACAATGGAGAATACTCTTTCGAACAAAAAGTCCGAAGGCGGCGACGGCGATCGGTAAGGAGAGCGGAAGGCCCGAGCCCTTCGGCGGGGAGTCGGAGCCGAACGACGTCGTTTGGTGTTGGTTCTTTGATGTGTATCTCTATTGTTTTTGGTTTGTTTGTGTAA

Coding sequence (CDS)

ATGCCTCCAATCAAATCCATCCTTTTCATAGCTCTTCTCTTGCTCTCTCAATCTTCTTCCGCCGCCGTTCACGACGGCGCTCCCACATCACTCGCCGGAATCCTTCACCGGAGCACCCTTCAGACGGCTGGCAACAATGAAGTTGCAGAGAATTACAATGGAGAATACTCTTTCGAACAAAAAGTCCGAAGGCGGCGACGGCGATCGGTAAGGAGAGCGGAAGGCCCGAGCCCTTCGGCGGGGAGTCGGAGCCGAACGACGTCGTTTGGTGTTGGTTCTTTGATGTGTATCTCTATTGTTTTTGGTTTGTTTGTGTAA

Protein sequence

MPPIKSILFIALLLLSQSSSAAVHDGAPTSLAGILHRSTLQTAGNNEVAENYNGEYSFEQKVRRRRRRSVRRAEGPSPSAGSRSRTTSFGVGSLMCISIVFGLFV

Homology

[Close]

BLAST of Sed0019764 vs. NCBI nr
Match: XP_022992473.1 (uncharacterized protein LOC111488793 isoform X1 [Cucurbita maxima])

HSP 1 Score: 107.5 bits (267), Expect = 7.3e-20
Identity = 66/111 (59.46%), Postives = 81/111 (72.97%), Query Frame = 0


Query: 1   MPPIKSILFIALLLL-----SQSSSAAVHDGAPTSLAGILHRSTLQTAGNNEVAENYNG- 60
           M PIKS++ IALL L         SAA H  AP+ LAG+    TLQTA  ++VAEN  G 
Sbjct: 63  MAPIKSLISIALLALLLLFERLPISAADHGVAPSPLAGVFRLDTLQTAERHQVAENGIGN 122

Query: 61  EYSFEQKVRRRRRRSVRRAEGPSPSAGSRSRTTSFGVGSLMCISIVFGLFV 106
           +YSFEQK+RRR RR+VRRAEGPSPS+ + SRT+SFGVGSL+C+  VFGLF+
Sbjct: 123 QYSFEQKIRRRARRAVRRAEGPSPSSANWSRTSSFGVGSLLCLCTVFGLFL 173

[Close]

BLAST of Sed0019764 vs. NCBI nr
Match: XP_022954099.1 (uncharacterized protein LOC111456466 [Cucurbita moschata])

HSP 1 Score: 107.1 bits (266), Expect = 9.6e-20
Identity = 66/111 (59.46%), Postives = 82/111 (73.87%), Query Frame = 0


Query: 1   MPPIKSILFIALLLLSQSS-----SAAVHDGAPTSLAGILHRSTLQTAGNNEVAENYNG- 60
           M PIKS++ IALL L   S     SAA H  AP+ LA +  R TLQTA  ++VAEN  G 
Sbjct: 90  MAPIKSLISIALLALLLLSEHLPISAADHGVAPSPLARVFRRDTLQTAERHQVAENGIGY 149

Query: 61  EYSFEQKVRRRRRRSVRRAEGPSPSAGSRSRTTSFGVGSLMCISIVFGLFV 106
           +YSFEQK+RRR RR+VRRAEGPSPS+ + S+T+SFGVGSL+C+  VFGLF+
Sbjct: 150 QYSFEQKIRRRARRAVRRAEGPSPSSANWSQTSSFGVGSLLCLCTVFGLFL 200

[Close]

BLAST of Sed0019764 vs. NCBI nr
Match: KAG6575858.1 (hypothetical protein SDJN03_26497, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 102.8 bits (255), Expect = 1.8e-18
Identity = 62/103 (60.19%), Postives = 77/103 (74.76%), Query Frame = 0


Query: 1   MPPIKSILFIALLLLSQSS-----SAAVHDGAPTSLAGILHRSTLQTAGNNEVAENYNG- 60
           M PIKS++ IALL L   S     SAA H  AP+ LAG+  R TLQTA  ++VAEN  G 
Sbjct: 1   MAPIKSLISIALLALLLLSEHLPISAADHGVAPSPLAGVFRRDTLQTAERHQVAENGIGY 60

Query: 61  EYSFEQKVRRRRRRSVRRAEGPSPSAGSRSRTTSFGVGSLMCI 98
           +YSFEQK+RRR RR+VRRAEGPSPS+ + SRT+SFG+GSL+C+
Sbjct: 61  QYSFEQKIRRRARRAVRRAEGPSPSSANWSRTSSFGIGSLLCL 103

[Close]

BLAST of Sed0019764 vs. NCBI nr
Match: KAG6593163.1 (hypothetical protein SDJN03_12639, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 63.9 bits (154), Expect = 9.3e-07
Identity = 49/111 (44.14%), Postives = 66/111 (59.46%), Query Frame = 0


Query: 1   MPPIKSILFIALLLL-----SQSSSAAVHDGAPTSLAGILHRSTLQ-TAGNNEVAENYNG 60
           M  IK++L IAL+ L     S  +SAAVH GA TSLAGIL R+ +Q TA +++VAE    
Sbjct: 1   MAAIKALLSIALIALLLFFESLPTSAAVHRGASTSLAGILRRNIVQTTADHHQVAEK--- 60

Query: 61  EYSFEQKVRRRRRRSVRRAEGPSPSAGSRSRTTSFGVGSLMCISIVFGLFV 106
              F   ++RR R        P  SA +RSR    GVGS++CI ++ GLF+
Sbjct: 61  --KFNVHIKRRMRMRPVLIGRPKTSAANRSREAFCGVGSMLCIFVLLGLFL 106

[Close]

BLAST of Sed0019764 vs. NCBI nr
Match: KGN45443.2 (hypothetical protein Csa_016459 [Cucumis sativus])

HSP 1 Score: 62.4 bits (150), Expect = 2.7e-06
Identity = 41/81 (50.62%), Postives = 52/81 (64.20%), Query Frame = 0


Query: 27  APTSLAGILHRSTLQTAGNNEVAENYNG-EYSFEQK-VRRRRRRSVRRAEGPSPSAGSRS 86
           AP S  G+   +  Q     +V EN NG  YSFEQK V++R RRS + AEGPSPS  +RS
Sbjct: 2   APNSPIGMFQMTEYQ-----QVVENKNGYRYSFEQKIVKKRARRSKKEAEGPSPSMANRS 61

Query: 87  RTTSFGVGSLMCISIVFGLFV 106
           R T F + SL+C+ IVFGL +
Sbjct: 62  RMTWFDIQSLLCMCIVFGLLM 77

[Close]

BLAST of Sed0019764 vs. ExPASy TrEMBL
Match: A0A6J1JZB1 (uncharacterized protein LOC111488793 isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111488793 PE=4 SV=1)

HSP 1 Score: 107.5 bits (267), Expect = 3.5e-20
Identity = 66/111 (59.46%), Postives = 81/111 (72.97%), Query Frame = 0


Query: 1   MPPIKSILFIALLLL-----SQSSSAAVHDGAPTSLAGILHRSTLQTAGNNEVAENYNG- 60
           M PIKS++ IALL L         SAA H  AP+ LAG+    TLQTA  ++VAEN  G 
Sbjct: 63  MAPIKSLISIALLALLLLFERLPISAADHGVAPSPLAGVFRLDTLQTAERHQVAENGIGN 122

Query: 61  EYSFEQKVRRRRRRSVRRAEGPSPSAGSRSRTTSFGVGSLMCISIVFGLFV 106
           +YSFEQK+RRR RR+VRRAEGPSPS+ + SRT+SFGVGSL+C+  VFGLF+
Sbjct: 123 QYSFEQKIRRRARRAVRRAEGPSPSSANWSRTSSFGVGSLLCLCTVFGLFL 173

[Close]

BLAST of Sed0019764 vs. ExPASy TrEMBL
Match: A0A6J1GRX2 (uncharacterized protein LOC111456466 OS=Cucurbita moschata OX=3662 GN=LOC111456466 PE=4 SV=1)

HSP 1 Score: 107.1 bits (266), Expect = 4.6e-20
Identity = 66/111 (59.46%), Postives = 82/111 (73.87%), Query Frame = 0


Query: 1   MPPIKSILFIALLLLSQSS-----SAAVHDGAPTSLAGILHRSTLQTAGNNEVAENYNG- 60
           M PIKS++ IALL L   S     SAA H  AP+ LA +  R TLQTA  ++VAEN  G 
Sbjct: 90  MAPIKSLISIALLALLLLSEHLPISAADHGVAPSPLARVFRRDTLQTAERHQVAENGIGY 149

Query: 61  EYSFEQKVRRRRRRSVRRAEGPSPSAGSRSRTTSFGVGSLMCISIVFGLFV 106
           +YSFEQK+RRR RR+VRRAEGPSPS+ + S+T+SFGVGSL+C+  VFGLF+
Sbjct: 150 QYSFEQKIRRRARRAVRRAEGPSPSSANWSQTSSFGVGSLLCLCTVFGLFL 200

[Close]

BLAST of Sed0019764 vs. ExPASy TrEMBL
Match: A0A0A0K934 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G394070 PE=4 SV=1)

HSP 1 Score: 62.8 bits (151), Expect = 1.0e-06
Identity = 50/100 (50.00%), Postives = 64/100 (64.00%), Query Frame = 0


Query: 1  MPP-IKSIL---FIALLLLSQ--SSSAAVHDGAPTSLAGILHRSTLQTAGNNEVAENYNG 60
          MPP IKS++    +ALLLLS+  S+SA  H+ AP S  G+   +  Q     +V EN NG
Sbjct: 1  MPPFIKSLISVALLALLLLSRFPSTSAVNHNMAPNSPIGMFQMTEYQ-----QVVENKNG 60

Query: 61 -EYSFEQK-VRRRRRRSVRRAEGPSPSAGSRSRTTSFGVG 93
            YSFEQK V++R RRS + AEGPSPS  +RSR T F +G
Sbjct: 61 YRYSFEQKIVKKRARRSKKEAEGPSPSMANRSRMTCFIIG 95

The following BLAST results are available for this feature:

BLAST of Sed0019764 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022992473.1	7.3e-20	59.46	uncharacterized protein LOC111488793 isoform X1 [Cucurbita maxima]	[more]
XP_022954099.1	9.6e-20	59.46	uncharacterized protein LOC111456466 [Cucurbita moschata]	[more]
KAG6575858.1	1.8e-18	60.19	hypothetical protein SDJN03_26497, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAG6593163.1	9.3e-07	44.14	hypothetical protein SDJN03_12639, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KGN45443.2	2.7e-06	50.62	hypothetical protein Csa_016459 [Cucumis sativus]	[more]

BLAST of Sed0019764 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Sed0019764 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1JZB1	3.5e-20	59.46	uncharacterized protein LOC111488793 isoform X1 OS=Cucurbita maxima OX=3661 GN=L...	[more]
A0A6J1GRX2	4.6e-20	59.46	uncharacterized protein LOC111456466 OS=Cucurbita moschata OX=3662 GN=LOC1114564...	[more]
A0A0A0K934	1.0e-06	50.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G394070 PE=4 SV=1	[more]

BLAST of Sed0019764 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25

Position :

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x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 63..88

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0019764.1	Sed0019764.1	mRNA