Sed0019743 (gene) Chayote v1

Overview


Name	Sed0019743
Type	gene
Organism	Sechium edule (Chayote v1)
Description	Pentatricopeptide repeat-containing protein
Location	LG06: 42173031 .. 42173761 (-)
RNA-Seq Expression	Sed0019743
Synteny	Sed0019743

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGAGCACATATTCAGAGAAACTCGCCTCATTTTGCTTTGAAACTTTACAAGTTGATGCTATCCAAGTATGTGGGTGCTGATAATTACACGTACCCACTTCTGATTCAGGCGTGTTCTATCCGTCGATCGGAATGGGAAGGAAAACAGGTACATAATCATGTTTTGAAGTTGGGTTTTGATTCGGATGTTTATGTTCAAAATACTTTGATTAATTTGTTGTCTGTTTGCTCGAACATGACTGATGCCCGCCGGGTGTTCGATGAAAGTCCTGTTCCGGATTCGGTGTTGTGGAATTCGATTTTGGCCGGGTATGTTCAAATGGGAAATGTAGAGGCTAGGAAGGTATATATCAAATTCCAGAGAGGAGTATAATTGCTTCAAATTCTATGATTGTTTTGTTTGGTGCTAAAGGGCGAGTGGCCGAAGCACGTAAATTGTTCGACGAAATGCCTAAGAAAGATAGGGTTACATGGAGTGCGTTAATTGCTTGTTTTGGGTAGAATGATATGTTTGAGGAAGCTATGAGAACATTTGTAGGAATGCAGAAAGTTGGAGTTATGGTGGATGAGGTTGTGGCAGTTAGTGCTCTTTTTGCTTGTGCAAACTTATTGATAGTCAGTATGGGGAAATTGATCCACAGTTTGTCTTTGAAAATTGGAATTGAATCTTATGTAAACCTTCAAAATGCTTTGATTCATATGTACTCGAAATGTGGGGGATTCACGTAA

mRNA sequence

ATGAGAGCACATATTCAGAGAAACTCGCCTCATTTTGCTTTGAAACTTTACAAGTTGATGCTATCCAAGTATGTGGGTGCTGATAATTACACGTACCCACTTCTGATTCAGGCGTGTTCTATCCGTCGATCGGAATGGGAAGGAAAACAGGTACATAATCATGTTTTGAAGTTGGGTTTTGATTCGGATGTTTATGTTCAAAATACTTTGATTAATTTGTTGTCTGTTTGCTCGAACATGACTGATGCCCGCCGGGTGTTCGATGAAAGTCCTGTTCCGGATTCGGTGTTGTGGAATTCGATTTTGGCCGGGTATGTTCAAATGGGAAATGTAGAGGCTAGGAAGAATGATATGTTTGAGGAAGCTATGAGAACATTTGTAGGAATGCAGAAAGTTGGAGTTATGGTGGATGAGGTTGTGGCAGTTAGTGCTCTTTTTGCTTGTGCAAACTTATTGATAGTCAGTATGGGGAAATTGATCCACAGTTTGTCTTTGAAAATTGGAATTGAATCTTATGTAAACCTTCAAAATGCTTTGATTCATATGTACTCGAAATGTGGGGGATTCACGTAA

Coding sequence (CDS)

ATGAGAGCACATATTCAGAGAAACTCGCCTCATTTTGCTTTGAAACTTTACAAGTTGATGCTATCCAAGTATGTGGGTGCTGATAATTACACGTACCCACTTCTGATTCAGGCGTGTTCTATCCGTCGATCGGAATGGGAAGGAAAACAGGTACATAATCATGTTTTGAAGTTGGGTTTTGATTCGGATGTTTATGTTCAAAATACTTTGATTAATTTGTTGTCTGTTTGCTCGAACATGACTGATGCCCGCCGGGTGTTCGATGAAAGTCCTGTTCCGGATTCGGTGTTGTGGAATTCGATTTTGGCCGGGTATGTTCAAATGGGAAATGTAGAGGCTAGGAAGAATGATATGTTTGAGGAAGCTATGAGAACATTTGTAGGAATGCAGAAAGTTGGAGTTATGGTGGATGAGGTTGTGGCAGTTAGTGCTCTTTTTGCTTGTGCAAACTTATTGATAGTCAGTATGGGGAAATTGATCCACAGTTTGTCTTTGAAAATTGGAATTGAATCTTATGTAAACCTTCAAAATGCTTTGATTCATATGTACTCGAAATGTGGGGGATTCACGTAA

Protein sequence

MRAHIQRNSPHFALKLYKLMLSKYVGADNYTYPLLIQACSIRRSEWEGKQVHNHVLKLGFDSDVYVQNTLINLLSVCSNMTDARRVFDESPVPDSVLWNSILAGYVQMGNVEARKNDMFEEAMRTFVGMQKVGVMVDEVVAVSALFACANLLIVSMGKLIHSLSLKIGIESYVNLQNALIHMYSKCGGFT

Homology

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BLAST of Sed0019743 vs. NCBI nr
Match: XP_022934101.1 (pentatricopeptide repeat-containing protein At1g08070, chloroplastic-like [Cucurbita moschata])

HSP 1 Score: 299.7 bits (766), Expect = 1.8e-77
Identity = 163/244 (66.80%), Postives = 172/244 (70.49%), Query Frame = 0


Query: 1   MRAHIQRNSPHFALKLYKLMLSKYVGADNYTYPLLIQACSIRRSEWEGKQVHNHVLKLGF 60
           MRA+IQRNSPHFAL LYK ML KY+ ADNYTYPLLIQACSIRRSEWEGKQVHNHV+KLGF
Sbjct: 101 MRAYIQRNSPHFALSLYKSMLFKYLEADNYTYPLLIQACSIRRSEWEGKQVHNHVMKLGF 160

Query: 61  DSDVYVQNTLINLLSVCSNMTDARRVFDESPVPDSVLWNSILAGYVQMGNVEARK----- 120
           DSDVYVQNTLIN  SVCSNM+DARRVFDES V DSV WNSILAGYVQ+GNVE  K     
Sbjct: 161 DSDVYVQNTLINFFSVCSNMSDARRVFDESTVLDSVSWNSILAGYVQVGNVEEAKCMYDQ 220

Query: 121 -------------------------------------------------NDMFEEAMRTF 180
                                                            N+MFEEAMRTF
Sbjct: 221 MPEKSIIASNSMIVLFGNKGLVVEACKLFDEMPERDMVTWSALIACYEQNEMFEEAMRTF 280

Query: 181 VGMQKVGVMVDEVVAVSALFACANLLIVSMGKLIHSLSLKIGIESYVNLQNALIHMYSKC 191
           VGM K GVMVDEVV VSAL ACANLLIV+MGKLIHSL+LKIGIESY+NLQNALIHMYSK 
Sbjct: 281 VGMHKFGVMVDEVVTVSALSACANLLIVNMGKLIHSLALKIGIESYINLQNALIHMYSKF 340

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BLAST of Sed0019743 vs. NCBI nr
Match: KAG6581225.1 (Pentatricopeptide repeat-containing protein, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 298.1 bits (762), Expect = 5.3e-77
Identity = 162/244 (66.39%), Postives = 171/244 (70.08%), Query Frame = 0


Query: 1   MRAHIQRNSPHFALKLYKLMLSKYVGADNYTYPLLIQACSIRRSEWEGKQVHNHVLKLGF 60
           MRA+IQRNSPHFAL LYK ML KY+ ADNYTYPLLIQACSIRRSEWEGKQVHNHV+KLGF
Sbjct: 101 MRAYIQRNSPHFALSLYKSMLFKYLEADNYTYPLLIQACSIRRSEWEGKQVHNHVMKLGF 160

Query: 61  DSDVYVQNTLINLLSVCSNMTDARRVFDESPVPDSVLWNSILAGYVQMGNVEARK----- 120
           DSDVYVQNTLIN  SVCS M+DARRVFDES V DSV WNSILAGYVQ+GNVE  K     
Sbjct: 161 DSDVYVQNTLINFFSVCSKMSDARRVFDESSVSDSVSWNSILAGYVQVGNVEEAKYMYDQ 220

Query: 121 -------------------------------------------------NDMFEEAMRTF 180
                                                            N+MFEEAMRTF
Sbjct: 221 MPEKSIIASNSMIVLFGNKGLVVEACKLFDEMPERDMVTWSALIACYEQNEMFEEAMRTF 280

Query: 181 VGMQKVGVMVDEVVAVSALFACANLLIVSMGKLIHSLSLKIGIESYVNLQNALIHMYSKC 191
           VGM K GVMVDEVV VSAL ACANLLIV+MGKLIHSL+LKIGIESY+NLQNALIHMYSK 
Sbjct: 281 VGMHKFGVMVDEVVTVSALSACANLLIVNMGKLIHSLALKIGIESYINLQNALIHMYSKF 340

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BLAST of Sed0019743 vs. NCBI nr
Match: KAG7017956.1 (Pentatricopeptide repeat-containing protein, chloroplastic, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 296.6 bits (758), Expect = 1.5e-76
Identity = 162/244 (66.39%), Postives = 170/244 (69.67%), Query Frame = 0


Query: 1   MRAHIQRNSPHFALKLYKLMLSKYVGADNYTYPLLIQACSIRRSEWEGKQVHNHVLKLGF 60
           MRA+IQRNSPHFAL LYK ML KY+ ADNYTYPLLIQACSIRRSEWE KQVHNHV+KLGF
Sbjct: 66  MRAYIQRNSPHFALSLYKSMLFKYLEADNYTYPLLIQACSIRRSEWEEKQVHNHVMKLGF 125

Query: 61  DSDVYVQNTLINLLSVCSNMTDARRVFDESPVPDSVLWNSILAGYVQMGNVEARK----- 120
           DSDVYVQNTLIN  SVCS M+DARRVFDES V DSV WNSILAGYVQ+GNVE  K     
Sbjct: 126 DSDVYVQNTLINFFSVCSKMSDARRVFDESSVSDSVSWNSILAGYVQVGNVEEAKYMYDQ 185

Query: 121 -------------------------------------------------NDMFEEAMRTF 180
                                                            NDMFEEAMRTF
Sbjct: 186 MPEKSIIASNSMIVLFGNKGLVVEACKLFDEMPERDMVTWSALIACYEQNDMFEEAMRTF 245

Query: 181 VGMQKVGVMVDEVVAVSALFACANLLIVSMGKLIHSLSLKIGIESYVNLQNALIHMYSKC 191
           VGM K GVMVDEVV VSAL ACANLLIV+MGKLIHSL+LKIGIESY+NLQNALIHMYSK 
Sbjct: 246 VGMHKFGVMVDEVVTVSALSACANLLIVNMGKLIHSLALKIGIESYINLQNALIHMYSKF 305

[Close]

BLAST of Sed0019743 vs. NCBI nr
Match: XP_022152191.1 (pentatricopeptide repeat-containing protein At3g62890 [Momordica charantia] >XP_022152192.1 pentatricopeptide repeat-containing protein At3g62890 [Momordica charantia] >XP_022152194.1 pentatricopeptide repeat-containing protein At3g62890 [Momordica charantia])

HSP 1 Score: 296.2 bits (757), Expect = 2.0e-76
Identity = 159/241 (65.98%), Postives = 176/241 (73.03%), Query Frame = 0


Query: 1   MRAHIQRNSPHFALKLYKLMLSKYVGADNYTYPLLIQACSIRRSEWEGKQVHNHVLKLGF 60
           MR +IQRNSPHF+L LYKLMLSKYVG DNYTYP+++QACSIR+SE+EGKQVHNH+LKLGF
Sbjct: 102 MRTYIQRNSPHFSLGLYKLMLSKYVGPDNYTYPIIVQACSIRQSEFEGKQVHNHILKLGF 161

Query: 61  DSDVYVQNTLINLLSVCSNMTDARRVFDESPVPDSVLWNSILAGYVQMGNVE-------- 120
           DSDVYVQNTLINL SVCSNMTDARR+FDES V DSV WNSILAGYVQ+G+VE        
Sbjct: 162 DSDVYVQNTLINLFSVCSNMTDARRMFDESSVLDSVSWNSILAGYVQIGSVEEAKYIYDQ 221

Query: 121 ------------------------ARK----------------------NDMFEEAMRTF 180
                                   ARK                      N+M EEAMRTF
Sbjct: 222 MPERSIIASNSMIVLFGSKGRVIDARKLFDEMPEKDMVTWSALIACYEQNEMLEEAMRTF 281

Query: 181 VGMQKVGVMVDEVVAVSALFACANLLIVSMGKLIHSLSLKIGIESYVNLQNALIHMYSKC 188
           VGM K+GVMVDEVVAVSAL ACANLLIV+MGKLIHSL+ +IGIESY+NLQNALIHMYSKC
Sbjct: 282 VGMHKIGVMVDEVVAVSALSACANLLIVNMGKLIHSLAWRIGIESYINLQNALIHMYSKC 341

[Close]

BLAST of Sed0019743 vs. NCBI nr
Match: XP_023526341.1 (pentatricopeptide repeat-containing protein At3g62890-like isoform X3 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 294.3 bits (752), Expect = 7.7e-76
Identity = 160/241 (66.39%), Postives = 169/241 (70.12%), Query Frame = 0


Query: 1   MRAHIQRNSPHFALKLYKLMLSKYVGADNYTYPLLIQACSIRRSEWEGKQVHNHVLKLGF 60
           MRA+IQRNSPHFAL LYK ML KY+ ADNYTYPLLIQACSIRRSEWEGKQVHNHV+KLGF
Sbjct: 50  MRAYIQRNSPHFALSLYKSMLFKYLEADNYTYPLLIQACSIRRSEWEGKQVHNHVMKLGF 109

Query: 61  DSDVYVQNTLINLLSVCSNMTDARRVFDESPVPDSVLWNSILAGYVQMGNVEARK----- 120
           DSDVYVQNTLIN  SVCS M+DARRVFDES V DSV WNSILAGYVQ+GNVE  K     
Sbjct: 110 DSDVYVQNTLINFFSVCSKMSDARRVFDESSVLDSVSWNSILAGYVQIGNVEEAKYMYDQ 169

Query: 121 -------------------------------------------------NDMFEEAMRTF 180
                                                            N+MFEEAMRTF
Sbjct: 170 MPEKSIIASNSMIVLFGNKGLVVEACKLFDEMPERDMVTWSALIACYEQNEMFEEAMRTF 229

Query: 181 VGMQKVGVMVDEVVAVSALFACANLLIVSMGKLIHSLSLKIGIESYVNLQNALIHMYSKC 188
            GM K GVMVDEVV VSAL ACANLLIV+MGKLIHSL+LKIGIESY+NLQNALIHMYSK 
Sbjct: 230 AGMHKFGVMVDEVVTVSALSACANLLIVNMGKLIHSLALKIGIESYINLQNALIHMYSKF 289

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BLAST of Sed0019743 vs. ExPASy Swiss-Prot
Match: Q9LN01 (Pentatricopeptide repeat-containing protein At1g08070, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PCMP-H12 PE=2 SV=1)

HSP 1 Score: 119.0 bits (297), Expect = 5.8e-26
Identity = 71/217 (32.72%), Postives = 110/217 (50.69%), Query Frame = 0


Query: 2   RAHIQRNSPHFALKLYKLMLSKYVGADNYTYPLLIQACSIRRSEWEGKQVHNHVLKLGFD 61
           R H   + P  ALKLY  M+S  +  ++YT+P ++++C+  ++  EG+Q+H HVLKLG D
Sbjct: 107 RGHALSSDPVSALKLYVCMISLGLLPNSYTFPFVLKSCAKSKAFKEGQQIHGHVLKLGCD 166

Query: 62  SDVYVQNTLINLLSVCSNMTDARRVFDES------------------------------- 121
            D+YV  +LI++      + DA +VFD+S                               
Sbjct: 167 LDLYVHTSLISMYVQNGRLEDAHKVFDKSPHRDVVSYTALIKGYASRGYIENAQKLFDEI 226

Query: 122 PVPDSVLWNSILAGYVQMGNVEARKNDMFEEAMRTFVGMQKVGVMVDEVVAVSALFACAN 181
           PV D V WN++++GY + GN        ++EA+  F  M K  V  DE   V+ + ACA 
Sbjct: 227 PVKDVVSWNAMISGYAETGN--------YKEALELFKDMMKTNVRPDESTMVTVVSACAQ 286

Query: 182 LLIVSMGKLIHSLSLKIGIESYVNLQNALIHMYSKCG 188
              + +G+ +H      G  S + + NALI +YSKCG
Sbjct: 287 SGSIELGRQVHLWIDDHGFGSNLKIVNALIDLYSKCG 315

[Close]

BLAST of Sed0019743 vs. ExPASy Swiss-Prot
Match: Q9FJY7 (Pentatricopeptide repeat-containing protein At5g66520 OS=Arabidopsis thaliana OX=3702 GN=PCMP-H61 PE=2 SV=1)

HSP 1 Score: 118.2 bits (295), Expect = 9.9e-26
Identity = 76/203 (37.44%), Postives = 103/203 (50.74%), Query Frame = 0


Query: 8   NSPHFALKLYKLMLSKYVGADNYTYPLLIQACSIRRSEWEGKQVHNHVLKLGFDSDVYVQ 67
           + P  +L LY+ ML      + YT+P L++ACS   +  E  Q+H  + KLG+++DVY  
Sbjct: 94  DEPERSLLLYQRMLCSSAPHNAYTFPSLLKACSNLSAFEETTQIHAQITKLGYENDVYAV 153

Query: 68  NTLINLLSVCSNMTDARRVFDESPVPDSVLWNSILAGYVQMGNVE---------ARKN-- 127
           N+LIN  +V  N   A  +FD  P PD V WNS++ GYV+ G ++         A KN  
Sbjct: 154 NSLINSYAVTGNFKLAHLLFDRIPEPDDVSWNSVIKGYVKAGKMDIALTLFRKMAEKNAI 213

Query: 128 ------------DMFEEAMRTFVGMQKVGVMVDEVVAVSALFACANLLIVSMGKLIHSLS 187
                       DM +EA++ F  MQ   V  D V   +AL ACA L  +  GK IHS  
Sbjct: 214 SWTTMISGYVQADMNKEALQLFHEMQNSDVEPDNVSLANALSACAQLGALEQGKWIHSYL 273

[Close]

BLAST of Sed0019743 vs. ExPASy Swiss-Prot
Match: A8MQA3 (Pentatricopeptide repeat-containing protein At4g21065 OS=Arabidopsis thaliana OX=3702 GN=PCMP-H28 PE=2 SV=2)

HSP 1 Score: 113.2 bits (282), Expect = 3.2e-24
Identity = 61/188 (32.45%), Postives = 105/188 (55.85%), Query Frame = 0


Query: 1   MRAHIQRNSPHFALKLYKLM-LSKYVGADNYTYPLLIQACSIRRSEWEGKQVHNHVLKLG 60
           +R + +  +   A  LY+ M +S  V  D +TYP LI+A +       G+ +H+ V++ G
Sbjct: 92  IRGYAEIGNSISAFSLYREMRVSGLVEPDTHTYPFLIKAVTTMADVRLGETIHSVVIRSG 151

Query: 61  FDSDVYVQNTLINLLSVCSNMTDARRVFDESPVPDSVLWNSILAGYVQMGNVEARKNDMF 120
           F S +YVQN+L++L + C ++  A +VFD+ P  D V WNS++ G+ + G          
Sbjct: 152 FGSLIYVQNSLLHLYANCGDVASAYKVFDKMPEKDLVAWNSVINGFAENGKP-------- 211

Query: 121 EEAMRTFVGMQKVGVMVDEVVAVSALFACANLLIVSMGKLIHSLSLKIGIESYVNLQNAL 180
           EEA+  +  M   G+  D    VS L ACA +  +++GK +H   +K+G+   ++  N L
Sbjct: 212 EEALALYTEMNSKGIKPDGFTIVSLLSACAKIGALTLGKRVHVYMIKVGLTRNLHSSNVL 271

Query: 181 IHMYSKCG 188
           + +Y++CG
Sbjct: 272 LDLYARCG 271

[Close]

BLAST of Sed0019743 vs. ExPASy Swiss-Prot
Match: Q9SS60 (Pentatricopeptide repeat-containing protein At3g03580 OS=Arabidopsis thaliana OX=3702 GN=PCMP-H23 PE=2 SV=1)

HSP 1 Score: 111.7 bits (278), Expect = 9.2e-24
Identity = 62/173 (35.84%), Postives = 96/173 (55.49%), Query Frame = 0


Query: 13  ALKLYKLMLSKYVGADNYTYPLLIQACSIRRSEWEGKQVHNHVLKLGFDSDVYVQNTLIN 72
           AL+ Y  +    V  D YT+P +I+AC+       G  V+  +L +GF+SD++V N L++
Sbjct: 90  ALEFYGKLRESKVSPDKYTFPSVIKACAGLFDAEMGDLVYEQILDMGFESDLFVGNALVD 149

Query: 73  LLSVCSNMTDARRVFDESPVPDSVLWNSILAGYVQMGNVEARKNDMFEEAMRTFVGMQKV 132
           + S    +T AR+VFDE PV D V WNS+++GY   G         +EEA+  +  ++  
Sbjct: 150 MYSRMGLLTRARQVFDEMPVRDLVSWNSLISGYSSHG--------YYEEALEIYHELKNS 209

Query: 133 GVMVDEVVAVSALFACANLLIVSMGKLIHSLSLKIGIESYVNLQNALIHMYSK 186
            ++ D     S L A  NLL+V  G+ +H  +LK G+ S V + N L+ MY K
Sbjct: 210 WIVPDSFTVSSVLPAFGNLLVVKQGQGLHGFALKSGVNSVVVVNNGLVAMYLK 254

[Close]

BLAST of Sed0019743 vs. ExPASy Swiss-Prot
Match: Q9C6T2 (Pentatricopeptide repeat-containing protein At1g31920 OS=Arabidopsis thaliana OX=3702 GN=PCMP-H11 PE=2 SV=1)

HSP 1 Score: 110.9 bits (276), Expect = 1.6e-23
Identity = 66/188 (35.11%), Postives = 103/188 (54.79%), Query Frame = 0


Query: 1   MRAHIQRNSPHFALKLYKLMLSKYVGADNYTYPLLIQACSIRRSEWEGKQVHNHVLKLGF 60
           +R ++   S   AL  Y  M+ +    DN+TYP L++AC+  +S  EGKQ+H  V KLG 
Sbjct: 104 IRGYVNVMSFEEALCFYNEMMQRGNEPDNFTYPCLLKACTRLKSIREGKQIHGQVFKLGL 163

Query: 61  DSDVYVQNTLINLLSVCSNMTDARRVFDESPVPDSVLWNSILAGYVQMGNVEARKNDMFE 120
           ++DV+VQN+LIN+   C  M  +  VF++     +  W+S+++    MG        M+ 
Sbjct: 164 EADVFVQNSLINMYGRCGEMELSSAVFEKLESKTAASWSSMVSARAGMG--------MWS 223

Query: 121 EAMRTFVGM-QKVGVMVDEVVAVSALFACANLLIVSMGKLIHSLSLKIGIESYVNLQNAL 180
           E +  F GM  +  +  +E   VSAL ACAN   +++G  IH   L+   E  + +Q +L
Sbjct: 224 ECLLLFRGMCSETNLKAEESGMVSALLACANTGALNLGMSIHGFLLRNISELNIIVQTSL 283

Query: 181 IHMYSKCG 188
           + MY KCG
Sbjct: 284 VDMYVKCG 283

[Close]

BLAST of Sed0019743 vs. ExPASy TrEMBL
Match: A0A6J1F0X4 (pentatricopeptide repeat-containing protein At1g08070, chloroplastic-like OS=Cucurbita moschata OX=3662 GN=LOC111441375 PE=3 SV=1)

HSP 1 Score: 299.7 bits (766), Expect = 8.8e-78
Identity = 163/244 (66.80%), Postives = 172/244 (70.49%), Query Frame = 0


Query: 1   MRAHIQRNSPHFALKLYKLMLSKYVGADNYTYPLLIQACSIRRSEWEGKQVHNHVLKLGF 60
           MRA+IQRNSPHFAL LYK ML KY+ ADNYTYPLLIQACSIRRSEWEGKQVHNHV+KLGF
Sbjct: 101 MRAYIQRNSPHFALSLYKSMLFKYLEADNYTYPLLIQACSIRRSEWEGKQVHNHVMKLGF 160

Query: 61  DSDVYVQNTLINLLSVCSNMTDARRVFDESPVPDSVLWNSILAGYVQMGNVEARK----- 120
           DSDVYVQNTLIN  SVCSNM+DARRVFDES V DSV WNSILAGYVQ+GNVE  K     
Sbjct: 161 DSDVYVQNTLINFFSVCSNMSDARRVFDESTVLDSVSWNSILAGYVQVGNVEEAKCMYDQ 220

Query: 121 -------------------------------------------------NDMFEEAMRTF 180
                                                            N+MFEEAMRTF
Sbjct: 221 MPEKSIIASNSMIVLFGNKGLVVEACKLFDEMPERDMVTWSALIACYEQNEMFEEAMRTF 280

Query: 181 VGMQKVGVMVDEVVAVSALFACANLLIVSMGKLIHSLSLKIGIESYVNLQNALIHMYSKC 191
           VGM K GVMVDEVV VSAL ACANLLIV+MGKLIHSL+LKIGIESY+NLQNALIHMYSK 
Sbjct: 281 VGMHKFGVMVDEVVTVSALSACANLLIVNMGKLIHSLALKIGIESYINLQNALIHMYSKF 340

[Close]

BLAST of Sed0019743 vs. ExPASy TrEMBL
Match: A0A6J1DFB5 (pentatricopeptide repeat-containing protein At3g62890 OS=Momordica charantia OX=3673 GN=LOC111019971 PE=3 SV=1)

HSP 1 Score: 296.2 bits (757), Expect = 9.7e-77
Identity = 159/241 (65.98%), Postives = 176/241 (73.03%), Query Frame = 0


Query: 1   MRAHIQRNSPHFALKLYKLMLSKYVGADNYTYPLLIQACSIRRSEWEGKQVHNHVLKLGF 60
           MR +IQRNSPHF+L LYKLMLSKYVG DNYTYP+++QACSIR+SE+EGKQVHNH+LKLGF
Sbjct: 102 MRTYIQRNSPHFSLGLYKLMLSKYVGPDNYTYPIIVQACSIRQSEFEGKQVHNHILKLGF 161

Query: 61  DSDVYVQNTLINLLSVCSNMTDARRVFDESPVPDSVLWNSILAGYVQMGNVE-------- 120
           DSDVYVQNTLINL SVCSNMTDARR+FDES V DSV WNSILAGYVQ+G+VE        
Sbjct: 162 DSDVYVQNTLINLFSVCSNMTDARRMFDESSVLDSVSWNSILAGYVQIGSVEEAKYIYDQ 221

Query: 121 ------------------------ARK----------------------NDMFEEAMRTF 180
                                   ARK                      N+M EEAMRTF
Sbjct: 222 MPERSIIASNSMIVLFGSKGRVIDARKLFDEMPEKDMVTWSALIACYEQNEMLEEAMRTF 281

Query: 181 VGMQKVGVMVDEVVAVSALFACANLLIVSMGKLIHSLSLKIGIESYVNLQNALIHMYSKC 188
           VGM K+GVMVDEVVAVSAL ACANLLIV+MGKLIHSL+ +IGIESY+NLQNALIHMYSKC
Sbjct: 282 VGMHKIGVMVDEVVAVSALSACANLLIVNMGKLIHSLAWRIGIESYINLQNALIHMYSKC 341

[Close]

BLAST of Sed0019743 vs. ExPASy TrEMBL
Match: A0A6J1J842 (pentatricopeptide repeat-containing protein At1g08070, chloroplastic-like OS=Cucurbita maxima OX=3661 GN=LOC111482218 PE=3 SV=1)

HSP 1 Score: 293.5 bits (750), Expect = 6.3e-76
Identity = 160/241 (66.39%), Postives = 171/241 (70.95%), Query Frame = 0


Query: 1   MRAHIQRNSPHFALKLYKLMLSKYVGADNYTYPLLIQACSIRRSEWEGKQVHNHVLKLGF 60
           MRA+IQRNSPHFAL LYK ML KY+ ADNYTYPLLIQACSIRRSE EGKQVHNHV+KLGF
Sbjct: 101 MRAYIQRNSPHFALNLYKSMLFKYLEADNYTYPLLIQACSIRRSEGEGKQVHNHVMKLGF 160

Query: 61  DSDVYVQNTLINLLSVCSNMTDARRVFDESPVPDSVLWNSILAGYVQMGNVEARK----- 120
           DSDVYVQNTLIN  SVCSNM+DARRVFDES V DSV WNSIL+GYVQ+GNVE  K     
Sbjct: 161 DSDVYVQNTLINFFSVCSNMSDARRVFDESSVLDSVSWNSILSGYVQVGNVEEAKYMYDQ 220

Query: 121 -------------------------------------------------NDMFEEAMRTF 180
                                                            N+MFEEAMRTF
Sbjct: 221 MPEKSIIASNSMIVLFGNKGLVVEACKLFDEMPERDMVTWSALIACYEQNEMFEEAMRTF 280

Query: 181 VGMQKVGVMVDEVVAVSALFACANLLIVSMGKLIHSLSLKIGIESYVNLQNALIHMYSKC 188
           VGM K+GVMVDEVV VSAL ACANLLIV+MGKLIHSL+LKIGIESY+NLQNALIHMYSK 
Sbjct: 281 VGMHKIGVMVDEVVTVSALSACANLLIVNMGKLIHSLALKIGIESYINLQNALIHMYSKF 340

[Close]

BLAST of Sed0019743 vs. ExPASy TrEMBL
Match: A0A1S4E1G8 (pentatricopeptide repeat-containing protein At3g62890-like OS=Cucumis melo OX=3656 GN=LOC103496856 PE=3 SV=1)

HSP 1 Score: 292.7 bits (748), Expect = 1.1e-75
Identity = 156/241 (64.73%), Postives = 171/241 (70.95%), Query Frame = 0


Query: 1   MRAHIQRNSPHFALKLYKLMLSKYVGADNYTYPLLIQACSIRRSEWEGKQVHNHVLKLGF 60
           +RA+IQ NSPHFA  LYK MLS Y+GADNYTYPLLIQACSIRRSEWE KQVHNHVLKLGF
Sbjct: 117 IRAYIQTNSPHFAFTLYKSMLSNYLGADNYTYPLLIQACSIRRSEWEAKQVHNHVLKLGF 176

Query: 61  DSDVYVQNTLINLLSVCSNMTDARRVFDESPVPDSVLWNSILAGYVQMGNVEARK----- 120
           DSDVYV+NTLIN  SVCSNMTDARRVFDE+ + DSV WNSILAGYVQ+GNVE  K     
Sbjct: 177 DSDVYVRNTLINCFSVCSNMTDARRVFDENSILDSVSWNSILAGYVQIGNVEEAKHIYHQ 236

Query: 121 -------------------------------------------------NDMFEEAMRTF 180
                                                            N+MFEEA+RTF
Sbjct: 237 MPERSIIASNSMIVLFGIKGLVVEACKLFDAMLEKDMVTWSALIACFQQNEMFEEAIRTF 296

Query: 181 VGMQKVGVMVDEVVAVSALFACANLLIVSMGKLIHSLSLKIGIESYVNLQNALIHMYSKC 188
           VGM K+GVMVDEVVAVSAL ACA+LLIV+MGKLIHSLSLK+G ESY+NLQNALI+MYSKC
Sbjct: 297 VGMHKIGVMVDEVVAVSALSACADLLIVNMGKLIHSLSLKVGTESYINLQNALIYMYSKC 356

[Close]

BLAST of Sed0019743 vs. ExPASy TrEMBL
Match: A0A5N6QV14 (DYW_deaminase domain-containing protein OS=Carpinus fangiana OX=176857 GN=FH972_006714 PE=3 SV=1)

HSP 1 Score: 243.4 bits (620), Expect = 7.5e-61
Identity = 131/241 (54.36%), Postives = 155/241 (64.32%), Query Frame = 0


Query: 1   MRAHIQRNSPHFALKLYKLMLSKYVGADNYTYPLLIQACSIRRSEWEGKQVHNHVLKLGF 60
           MRA++QRNSP  A+ LYKLML + +G DNYTYPLL+QAC+IR SE+EGKQ+H+HVLKLGF
Sbjct: 50  MRAYVQRNSPGKAISLYKLMLDETLGGDNYTYPLLVQACAIRLSEFEGKQMHDHVLKLGF 109

Query: 61  DSDVYVQNTLINLLSVCSNMTDARRVFDESPVPDSVLWNSILAGYVQMGNVE-------- 120
           DSDVYVQNTLIN+  VC  M DARR+FDESPV DSV WNSILAGYVQ+G+VE        
Sbjct: 110 DSDVYVQNTLINMYVVCGKMGDARRLFDESPVLDSVSWNSILAGYVQIGDVENARYVYDR 169

Query: 121 ----------------------------------------------ARKNDMFEEAMRTF 180
                                                           +N+M+EEA+  F
Sbjct: 170 MPERNTIASNSMIVLLGRTGHVTEACQLFNEMPEKDMVSWSALISCYEQNEMYEEALVMF 229

Query: 181 VGMQKVGVMVDEVVAVSALFACANLLIVSMGKLIHSLSLKIGIESYVNLQNALIHMYSKC 188
           V M   G+MVDEVV VS L ACA+LL+V  GK++H L +KIG ESYVNLQNA IHMYS C
Sbjct: 230 VKMMANGIMVDEVVVVSVLSACAHLLVVKTGKIVHGLVVKIGTESYVNLQNAFIHMYSTC 289

[Close]

BLAST of Sed0019743 vs. TAIR 10
Match: AT1G08070.1 (Tetratricopeptide repeat (TPR)-like superfamily protein )

HSP 1 Score: 119.0 bits (297), Expect = 4.1e-27
Identity = 71/217 (32.72%), Postives = 110/217 (50.69%), Query Frame = 0


Query: 2   RAHIQRNSPHFALKLYKLMLSKYVGADNYTYPLLIQACSIRRSEWEGKQVHNHVLKLGFD 61
           R H   + P  ALKLY  M+S  +  ++YT+P ++++C+  ++  EG+Q+H HVLKLG D
Sbjct: 107 RGHALSSDPVSALKLYVCMISLGLLPNSYTFPFVLKSCAKSKAFKEGQQIHGHVLKLGCD 166

Query: 62  SDVYVQNTLINLLSVCSNMTDARRVFDES------------------------------- 121
            D+YV  +LI++      + DA +VFD+S                               
Sbjct: 167 LDLYVHTSLISMYVQNGRLEDAHKVFDKSPHRDVVSYTALIKGYASRGYIENAQKLFDEI 226

Query: 122 PVPDSVLWNSILAGYVQMGNVEARKNDMFEEAMRTFVGMQKVGVMVDEVVAVSALFACAN 181
           PV D V WN++++GY + GN        ++EA+  F  M K  V  DE   V+ + ACA 
Sbjct: 227 PVKDVVSWNAMISGYAETGN--------YKEALELFKDMMKTNVRPDESTMVTVVSACAQ 286

Query: 182 LLIVSMGKLIHSLSLKIGIESYVNLQNALIHMYSKCG 188
              + +G+ +H      G  S + + NALI +YSKCG
Sbjct: 287 SGSIELGRQVHLWIDDHGFGSNLKIVNALIDLYSKCG 315

[Close]

BLAST of Sed0019743 vs. TAIR 10
Match: AT5G66520.1 (Tetratricopeptide repeat (TPR)-like superfamily protein )

HSP 1 Score: 118.2 bits (295), Expect = 7.0e-27
Identity = 76/203 (37.44%), Postives = 103/203 (50.74%), Query Frame = 0


Query: 8   NSPHFALKLYKLMLSKYVGADNYTYPLLIQACSIRRSEWEGKQVHNHVLKLGFDSDVYVQ 67
           + P  +L LY+ ML      + YT+P L++ACS   +  E  Q+H  + KLG+++DVY  
Sbjct: 94  DEPERSLLLYQRMLCSSAPHNAYTFPSLLKACSNLSAFEETTQIHAQITKLGYENDVYAV 153

Query: 68  NTLINLLSVCSNMTDARRVFDESPVPDSVLWNSILAGYVQMGNVE---------ARKN-- 127
           N+LIN  +V  N   A  +FD  P PD V WNS++ GYV+ G ++         A KN  
Sbjct: 154 NSLINSYAVTGNFKLAHLLFDRIPEPDDVSWNSVIKGYVKAGKMDIALTLFRKMAEKNAI 213

Query: 128 ------------DMFEEAMRTFVGMQKVGVMVDEVVAVSALFACANLLIVSMGKLIHSLS 187
                       DM +EA++ F  MQ   V  D V   +AL ACA L  +  GK IHS  
Sbjct: 214 SWTTMISGYVQADMNKEALQLFHEMQNSDVEPDNVSLANALSACAQLGALEQGKWIHSYL 273

[Close]

BLAST of Sed0019743 vs. TAIR 10
Match: AT4G21065.1 (Tetratricopeptide repeat (TPR)-like superfamily protein )

HSP 1 Score: 113.2 bits (282), Expect = 2.3e-25
Identity = 61/188 (32.45%), Postives = 105/188 (55.85%), Query Frame = 0


Query: 1   MRAHIQRNSPHFALKLYKLM-LSKYVGADNYTYPLLIQACSIRRSEWEGKQVHNHVLKLG 60
           +R + +  +   A  LY+ M +S  V  D +TYP LI+A +       G+ +H+ V++ G
Sbjct: 92  IRGYAEIGNSISAFSLYREMRVSGLVEPDTHTYPFLIKAVTTMADVRLGETIHSVVIRSG 151

Query: 61  FDSDVYVQNTLINLLSVCSNMTDARRVFDESPVPDSVLWNSILAGYVQMGNVEARKNDMF 120
           F S +YVQN+L++L + C ++  A +VFD+ P  D V WNS++ G+ + G          
Sbjct: 152 FGSLIYVQNSLLHLYANCGDVASAYKVFDKMPEKDLVAWNSVINGFAENGKP-------- 211

Query: 121 EEAMRTFVGMQKVGVMVDEVVAVSALFACANLLIVSMGKLIHSLSLKIGIESYVNLQNAL 180
           EEA+  +  M   G+  D    VS L ACA +  +++GK +H   +K+G+   ++  N L
Sbjct: 212 EEALALYTEMNSKGIKPDGFTIVSLLSACAKIGALTLGKRVHVYMIKVGLTRNLHSSNVL 271

Query: 181 IHMYSKCG 188
           + +Y++CG
Sbjct: 272 LDLYARCG 271

[Close]

BLAST of Sed0019743 vs. TAIR 10
Match: AT3G03580.1 (Tetratricopeptide repeat (TPR)-like superfamily protein )

HSP 1 Score: 111.7 bits (278), Expect = 6.6e-25
Identity = 62/173 (35.84%), Postives = 96/173 (55.49%), Query Frame = 0


Query: 13  ALKLYKLMLSKYVGADNYTYPLLIQACSIRRSEWEGKQVHNHVLKLGFDSDVYVQNTLIN 72
           AL+ Y  +    V  D YT+P +I+AC+       G  V+  +L +GF+SD++V N L++
Sbjct: 90  ALEFYGKLRESKVSPDKYTFPSVIKACAGLFDAEMGDLVYEQILDMGFESDLFVGNALVD 149

Query: 73  LLSVCSNMTDARRVFDESPVPDSVLWNSILAGYVQMGNVEARKNDMFEEAMRTFVGMQKV 132
           + S    +T AR+VFDE PV D V WNS+++GY   G         +EEA+  +  ++  
Sbjct: 150 MYSRMGLLTRARQVFDEMPVRDLVSWNSLISGYSSHG--------YYEEALEIYHELKNS 209

Query: 133 GVMVDEVVAVSALFACANLLIVSMGKLIHSLSLKIGIESYVNLQNALIHMYSK 186
            ++ D     S L A  NLL+V  G+ +H  +LK G+ S V + N L+ MY K
Sbjct: 210 WIVPDSFTVSSVLPAFGNLLVVKQGQGLHGFALKSGVNSVVVVNNGLVAMYLK 254

[Close]

BLAST of Sed0019743 vs. TAIR 10
Match: AT1G31920.1 (Tetratricopeptide repeat (TPR)-like superfamily protein )

HSP 1 Score: 110.9 bits (276), Expect = 1.1e-24
Identity = 66/188 (35.11%), Postives = 103/188 (54.79%), Query Frame = 0


Query: 1   MRAHIQRNSPHFALKLYKLMLSKYVGADNYTYPLLIQACSIRRSEWEGKQVHNHVLKLGF 60
           +R ++   S   AL  Y  M+ +    DN+TYP L++AC+  +S  EGKQ+H  V KLG 
Sbjct: 104 IRGYVNVMSFEEALCFYNEMMQRGNEPDNFTYPCLLKACTRLKSIREGKQIHGQVFKLGL 163

Query: 61  DSDVYVQNTLINLLSVCSNMTDARRVFDESPVPDSVLWNSILAGYVQMGNVEARKNDMFE 120
           ++DV+VQN+LIN+   C  M  +  VF++     +  W+S+++    MG        M+ 
Sbjct: 164 EADVFVQNSLINMYGRCGEMELSSAVFEKLESKTAASWSSMVSARAGMG--------MWS 223

Query: 121 EAMRTFVGM-QKVGVMVDEVVAVSALFACANLLIVSMGKLIHSLSLKIGIESYVNLQNAL 180
           E +  F GM  +  +  +E   VSAL ACAN   +++G  IH   L+   E  + +Q +L
Sbjct: 224 ECLLLFRGMCSETNLKAEESGMVSALLACANTGALNLGMSIHGFLLRNISELNIIVQTSL 283

Query: 181 IHMYSKCG 188
           + MY KCG
Sbjct: 284 VDMYVKCG 283

The following BLAST results are available for this feature:

BLAST of Sed0019743 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022934101.1	1.8e-77	66.80	pentatricopeptide repeat-containing protein At1g08070, chloroplastic-like [Cucur...	[more]
KAG6581225.1	5.3e-77	66.39	Pentatricopeptide repeat-containing protein, chloroplastic, partial [Cucurbita a...	[more]
KAG7017956.1	1.5e-76	66.39	Pentatricopeptide repeat-containing protein, chloroplastic, partial [Cucurbita a...	[more]
XP_022152191.1	2.0e-76	65.98	pentatricopeptide repeat-containing protein At3g62890 [Momordica charantia] >XP_...	[more]
XP_023526341.1	7.7e-76	66.39	pentatricopeptide repeat-containing protein At3g62890-like isoform X3 [Cucurbita...	[more]

BLAST of Sed0019743 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9LN01	5.8e-26	32.72	Pentatricopeptide repeat-containing protein At1g08070, chloroplastic OS=Arabidop...	[more]
Q9FJY7	9.9e-26	37.44	Pentatricopeptide repeat-containing protein At5g66520 OS=Arabidopsis thaliana OX...	[more]
A8MQA3	3.2e-24	32.45	Pentatricopeptide repeat-containing protein At4g21065 OS=Arabidopsis thaliana OX...	[more]
Q9SS60	9.2e-24	35.84	Pentatricopeptide repeat-containing protein At3g03580 OS=Arabidopsis thaliana OX...	[more]
Q9C6T2	1.6e-23	35.11	Pentatricopeptide repeat-containing protein At1g31920 OS=Arabidopsis thaliana OX...	[more]

BLAST of Sed0019743 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1F0X4	8.8e-78	66.80	pentatricopeptide repeat-containing protein At1g08070, chloroplastic-like OS=Cuc...	[more]
A0A6J1DFB5	9.7e-77	65.98	pentatricopeptide repeat-containing protein At3g62890 OS=Momordica charantia OX=...	[more]
A0A6J1J842	6.3e-76	66.39	pentatricopeptide repeat-containing protein At1g08070, chloroplastic-like OS=Cuc...	[more]
A0A1S4E1G8	1.1e-75	64.73	pentatricopeptide repeat-containing protein At3g62890-like OS=Cucumis melo OX=36...	[more]
A0A5N6QV14	7.5e-61	54.36	DYW_deaminase domain-containing protein OS=Carpinus fangiana OX=176857 GN=FH972_...	[more]

BLAST of Sed0019743 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G08070.1	4.1e-27	32.72	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]
AT5G66520.1	7.0e-27	37.44	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]
AT4G21065.1	2.3e-25	32.45	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]
AT3G03580.1	6.6e-25	35.84	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]
AT1G31920.1	1.1e-24	35.11	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25

Position :

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x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR011990	Tetratricopeptide-like helical domain superfamily	GENE3D	1.25.40.10	Tetratricopeptide repeat domain	coord: 1..166 e-value: 2.7E-20 score: 75.0
IPR002885	Pentatricopeptide repeat	PFAM	PF01535	PPR	coord: 96..112 e-value: 0.38 score: 11.1
None	No IPR available	PANTHER	PTHR47924	PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN	coord: 2..112 coord: 115..188
None	No IPR available	PANTHER	PTHR47924:SF46	PENTATRICOPEPTIDE REPEAT PROTEIN-RELATED	coord: 2..112 coord: 115..188

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0019743.1	Sed0019743.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0005515	protein binding