Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTTCAAATAAAAAGAATGACGAAAAGAAGAAGAGGAGGAAGGAACAAGAAACCAATCAGGACGAGCAGACAGAAGATAGTAGAATCTGAGACAGAACCTTTGCATAAGAAAGAAGAAACAGAAACTGTGACAGAAGTTTGTGTAAAGAAAGATGAGGAAATGGAAATGCCGAAGAAGAAGGAAAAGAAGAAAAAAGCTAAATTGTCTGAAGGGATTGATGGAGAATGTTGTAAAACAGGGCCAGATAGGATGGAGAATGTTAATAGTAGAGAGGGCAACAAGAAAAAGAAACAAATAATTGAGGATTCAAGAGAAAGTTATTTGCATATTAACAAGAAGAAGAGGAAGACAACTAAGTATGTTGAAAGTGGATCACAAGAAAAGGTTCACGAAGAAGGAGCAGGATTGACCGAGAACGACGACATTGGTGGTTCTTCCGAAAGACCGTCTCCCAAAGGATCATCTAAGAAAGTAAGGTTTTCAGAAGATGTGGAGATTTTTCCATTAGTTGATGGTCAAAGCAATGGAAAAACCAAGGGAGATGACGGTTTAATAAGAGGCAAACGATTTTCCAAAGAAGAAGACGAGATGGTTAAAAAGTCTGTCACAGAATACATCGAGGAACACGGGCTTGGTGATGAAGGTCTCCAAAAGGTTCTTCATTGCAGGGAGTATCCTGAAGTGAAGAACTGTTGGAAGGACATAGGAAAAGCCTTACATTGAAGACCGTATTTGAGTGTATACTATAGAGCTCACATCCTGTTCGAAAGGGGTGAGACGCGTAAATGGACAAAAGAGGAATATGAAATCGTTCGAAAATTTCACAACAAACATGGATCAGATTGGAAAGCATTGGCAGACGCACTCAAACAAAGGACAATGGACATAAGATGAGTACCAGAAGTTATTTGATTTAGTTAGCACAGACCTGCGAATTAAGGCTTACGAGGAAAAAAAATCCAAGCATGGAATGCTACGTGACAATATCTGTTGGGGAGAGATTAGCGACAGGCTGTCGACAAGATCGACTGCCCTTTGCTGCCAGAAATGGTATCGCCAGTTAACATCGCCAATGGTTGCTGAGGATGAATGGGCTGATGTCGATGACTACTGGCTTGTCGACGCCCTCTCTACCTTGGATGCTTTCTCCATTGAAGATGTCGAATGGGACCAACTGCTCGAGCATAGGAATGGTGATGTCTGTCGAAAGCGTTGGTTTCAAATGGTAAAACACATAGGTGATAATGGCAAAATGTCATTTTCTGATCAAGTTGAAGTGCTCTCCAAGAGATATAGCCTTGATGTACTTGATGCAAGAGAAGCCTATGCCAATGCACCTATAGTTGATTAA
mRNA sequence
ATGGTTCAAATAAAAAGAATGACGAAAAGAAGAAGAGGAGGAAGGAACAAGAAACCAATCAGGACGAGCAGACAGAAGATAGTAGAATCTGAGACAGAACCTTTGCATAAGAAAGAAGAAACAGAAACTGTGACAGAAGTTTGTGTAAAGAAAGATGAGGAAATGGAAATGCCGAAGAAGAAGGAAAAGAAGAAAAAAGCTAAATTGTCTGAAGGGATTGATGGAGAATGTTGTAAAACAGGGCCAGATAGGATGGAGAATGTTAATAGTAGAGAGGGCAACAAGAAAAAGAAACAAATAATTGAGGATTCAAGAGAAAGTTATTTGCATATTAACAAGAAGAAGAGGAAGACAACTAAGTATGTTGAAAGTGGATCACAAGAAAAGGTTCACGAAGAAGGAGCAGGATTGACCGAGAACGACGACATTGGTGGTTCTTCCGAAAGACCGTCTCCCAAAGGATCATCTAAGAAAGTAAGGTTTTCAGAAGATGTGGAGATTTTTCCATTAGTTGATGGTCAAAGCAATGGAAAAACCAAGGGAGATGACGGTTTAATAAGAGGCAAACGATTTTCCAAAGAAGAAGACGAGATGGTTAAAAAGTCTGTCACAGAATACATCGAGGAACACGGGCTTGGTGATGAAGGTCTCCAAAAGGTTCTTCATTGCAGGGAACCGTATTTGAGTGTATACTATAGAGCTCACATCCTGTTCGAAAGGGGTGAGACGCGTAAATGGACAAAAGAGGAATATGAAATCGTTCGAAAATTTCACAACAAACATGGATCAGATTGGAAAGCATTGGCAGACTACCAGAAGTTATTTGATTTAGTTAGCACAGACCTGCGAATTAAGGCTTACGAGGAAAAAAAATCCAAGCATGGAATGCTACGTGACAATATCTGTTGGGGAGAGATTAGCGACAGGCTGTCGACAAGATCGACTGCCCTTTGCTGCCAGAAATGGTATCGCCAGTTAACATCGCCAATGGTTGCTGAGGATGAATGGGCTGATGTCGATGACTACTGGCTTGTCGACGCCCTCTCTACCTTGGATGCTTTCTCCATTGAAGATGTCGAATGGGACCAACTGCTCGAGCATAGGAATGGTGATGTCTGTCGAAAGCGTTGGTTTCAAATGGTAAAACACATAGGTGATAATGGCAAAATGTCATTTTCTGATCAAGTTGAAGTGCTCTCCAAGAGATATAGCCTTGATGTACTTGATGCAAGAGAAGCCTATGCCAATGCACCTATAGTTGATTAA
Coding sequence (CDS)
ATGGTTCAAATAAAAAGAATGACGAAAAGAAGAAGAGGAGGAAGGAACAAGAAACCAATCAGGACGAGCAGACAGAAGATAGTAGAATCTGAGACAGAACCTTTGCATAAGAAAGAAGAAACAGAAACTGTGACAGAAGTTTGTGTAAAGAAAGATGAGGAAATGGAAATGCCGAAGAAGAAGGAAAAGAAGAAAAAAGCTAAATTGTCTGAAGGGATTGATGGAGAATGTTGTAAAACAGGGCCAGATAGGATGGAGAATGTTAATAGTAGAGAGGGCAACAAGAAAAAGAAACAAATAATTGAGGATTCAAGAGAAAGTTATTTGCATATTAACAAGAAGAAGAGGAAGACAACTAAGTATGTTGAAAGTGGATCACAAGAAAAGGTTCACGAAGAAGGAGCAGGATTGACCGAGAACGACGACATTGGTGGTTCTTCCGAAAGACCGTCTCCCAAAGGATCATCTAAGAAAGTAAGGTTTTCAGAAGATGTGGAGATTTTTCCATTAGTTGATGGTCAAAGCAATGGAAAAACCAAGGGAGATGACGGTTTAATAAGAGGCAAACGATTTTCCAAAGAAGAAGACGAGATGGTTAAAAAGTCTGTCACAGAATACATCGAGGAACACGGGCTTGGTGATGAAGGTCTCCAAAAGGTTCTTCATTGCAGGGAACCGTATTTGAGTGTATACTATAGAGCTCACATCCTGTTCGAAAGGGGTGAGACGCGTAAATGGACAAAAGAGGAATATGAAATCGTTCGAAAATTTCACAACAAACATGGATCAGATTGGAAAGCATTGGCAGACTACCAGAAGTTATTTGATTTAGTTAGCACAGACCTGCGAATTAAGGCTTACGAGGAAAAAAAATCCAAGCATGGAATGCTACGTGACAATATCTGTTGGGGAGAGATTAGCGACAGGCTGTCGACAAGATCGACTGCCCTTTGCTGCCAGAAATGGTATCGCCAGTTAACATCGCCAATGGTTGCTGAGGATGAATGGGCTGATGTCGATGACTACTGGCTTGTCGACGCCCTCTCTACCTTGGATGCTTTCTCCATTGAAGATGTCGAATGGGACCAACTGCTCGAGCATAGGAATGGTGATGTCTGTCGAAAGCGTTGGTTTCAAATGGTAAAACACATAGGTGATAATGGCAAAATGTCATTTTCTGATCAAGTTGAAGTGCTCTCCAAGAGATATAGCCTTGATGTACTTGATGCAAGAGAAGCCTATGCCAATGCACCTATAGTTGATTAA
Protein sequence
MVQIKRMTKRRRGGRNKKPIRTSRQKIVESETEPLHKKEETETVTEVCVKKDEEMEMPKKKEKKKKAKLSEGIDGECCKTGPDRMENVNSREGNKKKKQIIEDSRESYLHINKKKRKTTKYVESGSQEKVHEEGAGLTENDDIGGSSERPSPKGSSKKVRFSEDVEIFPLVDGQSNGKTKGDDGLIRGKRFSKEEDEMVKKSVTEYIEEHGLGDEGLQKVLHCREPYLSVYYRAHILFERGETRKWTKEEYEIVRKFHNKHGSDWKALADYQKLFDLVSTDLRIKAYEEKKSKHGMLRDNICWGEISDRLSTRSTALCCQKWYRQLTSPMVAEDEWADVDDYWLVDALSTLDAFSIEDVEWDQLLEHRNGDVCRKRWFQMVKHIGDNGKMSFSDQVEVLSKRYSLDVLDAREAYANAPIVD
Homology
BLAST of Sed0019703 vs. NCBI nr
Match:
XP_038879166.1 (cyclin-D-binding Myb-like transcription factor 1 isoform X1 [Benincasa hispida] >XP_038879174.1 cyclin-D-binding Myb-like transcription factor 1 isoform X1 [Benincasa hispida] >XP_038879180.1 cyclin-D-binding Myb-like transcription factor 1 isoform X1 [Benincasa hispida] >XP_038879187.1 cyclin-D-binding Myb-like transcription factor 1 isoform X1 [Benincasa hispida])
HSP 1 Score: 551.6 bits (1420), Expect = 5.9e-153
Identity = 308/466 (66.09%), Postives = 343/466 (73.61%), Query Frame = 0
Query: 5 KRMTKRRRGGRNKKPIRTSRQKIVESETEPLHKKEETETVTEVCVKKDEEMEMPKKKEKK 64
K+ K+++ + K + +++ +ES+ EP KKEE E+ TE CVKKDEEM +KK
Sbjct: 39 KKKKKKKKKQKEHKTQKDEQKEEIESDAEPRVKKEEIESETEPCVKKDEEM------QKK 98
Query: 65 KKAKLSEGIDGECCKTGPDRMENVNSREGNKKKKQIIEDSRESYLHINK-KKRKTTKYVE 124
KKAKLSEGID CK GPD S + KKKKQ EDS ES HI K +KRK TKYVE
Sbjct: 99 KKAKLSEGIDENNCKRGPD------SGKEKKKKKQKTEDSTESSSHITKEEKRKKTKYVE 158
Query: 125 SGSQEKVHEEGAGLTENDDIGGSSERPSPKGSSKKVRFSEDVEIFPLVDGQSNGKTKGDD 184
GS +KVHE AGL E ++I ER SPKGSSKKVRFSEDVEIFPLVD QS+GKTK DD
Sbjct: 159 GGSLKKVHEGEAGLRE-EEISSPPERLSPKGSSKKVRFSEDVEIFPLVDAQSSGKTKQDD 218
Query: 185 GLIRGKRFSKEEDEMVKKSVTEYIEEHGLGDEGLQKVLHCRE------------------ 244
GLIRGKRFSKEEDE+VKK+V +YIEEH LGDEGL+KVLHCRE
Sbjct: 219 GLIRGKRFSKEEDEIVKKAVLKYIEEHALGDEGLKKVLHCREFPEVKSCWKDIGKALPYR 278
Query: 245 PYLSVYYRAHILFERGETRKWTKEEYEIVRKFHNKHGSDWKALA---------------- 304
PYLSVYYRAHILFER ET KWT EEYE+VRKFH KHGSDWKALA
Sbjct: 279 PYLSVYYRAHILFERDETHKWTPEEYELVRKFHEKHGSDWKALAEVLGKHRFHVKDTWRR 338
Query: 305 --------------DYQKLFDLVSTDLRIKAYEEKKSKHGMLRDNICWGEISDRLSTRST 364
+YQKLFDLV+ DLR+KAYEEK+SKHGMLRDNICWG ISD LSTRST
Sbjct: 339 IKLPNMKKGKWTQDEYQKLFDLVNKDLRLKAYEEKRSKHGMLRDNICWGAISDELSTRST 398
Query: 365 ALCCQKWYRQLTSPMVAEDEWADVDDYWLVDALSTLDAFSIEDVEWDQLLEHRNGDVCRK 422
A+CCQKWY QLTSPMVA++EWADVDDY LVDALS+LDA SIEDVEWDQLLEHRNG+VCRK
Sbjct: 399 AICCQKWYGQLTSPMVADNEWADVDDYRLVDALSSLDACSIEDVEWDQLLEHRNGEVCRK 458
BLAST of Sed0019703 vs. NCBI nr
Match:
XP_022147286.1 (cyclin-D-binding Myb-like transcription factor 1 isoform X2 [Momordica charantia] >XP_022147288.1 cyclin-D-binding Myb-like transcription factor 1 isoform X2 [Momordica charantia])
HSP 1 Score: 548.1 bits (1411), Expect = 6.5e-152
Identity = 307/471 (65.18%), Postives = 348/471 (73.89%), Query Frame = 0
Query: 5 KRMTKRRRGGRNKKPIRTSRQKIVESETEPLHK----KEETETVTEVCVKKDEEMEMPKK 64
++ K+++ + K + ++ +ESETE K KEE E TE CV+KDEEM+M
Sbjct: 45 EKKEKKKKKRKEHKIRKDDHKEEIESETEHCVKKDEEKEEIEPETEPCVEKDEEMQM--- 104
Query: 65 KEKKKKAKLSEGIDGECCKTGPDRMENVNSREGNKKKKQIIEDSRE-SYLHINK-KKRKT 124
++KK LSEG+ + K G D + +E KKKKQ +EDSRE S L INK KKRK
Sbjct: 105 -QEKKNDNLSEGLHRKSHKRGTD-----SGKEKKKKKKQKVEDSRESSCLPINKEKKRKK 164
Query: 125 TKYVESGSQEKVHEEGAGLTENDDIGGSSERPSPKGSSKKVRFSEDVEIFPLVDGQSNGK 184
TK+VE GS EKVHE GAGL EN DI S+R SPKGSSKKV FS+DVEIFPLVDGQS+ K
Sbjct: 165 TKFVEDGSPEKVHEGGAGLRENGDIASPSKRLSPKGSSKKVSFSDDVEIFPLVDGQSSEK 224
Query: 185 TKGDDGLIRGKRFSKEEDEMVKKSVTEYIEEHGLGDEGLQKVLHCRE------------- 244
TK DDGLIRGKRFSKEEDEMVKK+V EYIEEHGLGDEGL+KVLHCRE
Sbjct: 225 TKQDDGLIRGKRFSKEEDEMVKKAVLEYIEEHGLGDEGLKKVLHCREFPEVKNCWKDIGK 284
Query: 245 -----PYLSVYYRAHILFERGETRKWTKEEYEIVRKFHNKHGSDWKALAD---------- 304
PYLSVYYRAHILFER + RKWT EEYE+VRKFH+KHGSDWK LAD
Sbjct: 285 ALSWRPYLSVYYRAHILFERDDKRKWTPEEYELVRKFHDKHGSDWKVLADALGKHRFHVK 344
Query: 305 --------------------YQKLFDLVSTDLRIKAYEEKKSKHGMLRDNICWGEISDRL 364
YQKLFDLV+TDLR+KA+EEKKSKHGMLRDNICWG ISD+L
Sbjct: 345 DTWRRIKLPNMKKGHWTQDEYQKLFDLVNTDLRLKAFEEKKSKHGMLRDNICWGAISDKL 404
Query: 365 STRSTALCCQKWYRQLTSPMVAEDEWADVDDYWLVDALSTLDAFSIEDVEWDQLLEHRNG 422
STRSTALCCQKWYRQLTSPMVAEDEWADVDDY L+DALS+LDA SIEDVEWDQLL+HRNG
Sbjct: 405 STRSTALCCQKWYRQLTSPMVAEDEWADVDDYHLIDALSSLDACSIEDVEWDQLLDHRNG 464
BLAST of Sed0019703 vs. NCBI nr
Match:
XP_022147285.1 (RNA polymerase I termination factor isoform X1 [Momordica charantia])
HSP 1 Score: 548.1 bits (1411), Expect = 6.5e-152
Identity = 307/471 (65.18%), Postives = 348/471 (73.89%), Query Frame = 0
Query: 5 KRMTKRRRGGRNKKPIRTSRQKIVESETEPLHK----KEETETVTEVCVKKDEEMEMPKK 64
++ K+++ + K + ++ +ESETE K KEE E TE CV+KDEEM+M
Sbjct: 67 EKKEKKKKKRKEHKIRKDDHKEEIESETEHCVKKDEEKEEIEPETEPCVEKDEEMQM--- 126
Query: 65 KEKKKKAKLSEGIDGECCKTGPDRMENVNSREGNKKKKQIIEDSRE-SYLHINK-KKRKT 124
++KK LSEG+ + K G D + +E KKKKQ +EDSRE S L INK KKRK
Sbjct: 127 -QEKKNDNLSEGLHRKSHKRGTD-----SGKEKKKKKKQKVEDSRESSCLPINKEKKRKK 186
Query: 125 TKYVESGSQEKVHEEGAGLTENDDIGGSSERPSPKGSSKKVRFSEDVEIFPLVDGQSNGK 184
TK+VE GS EKVHE GAGL EN DI S+R SPKGSSKKV FS+DVEIFPLVDGQS+ K
Sbjct: 187 TKFVEDGSPEKVHEGGAGLRENGDIASPSKRLSPKGSSKKVSFSDDVEIFPLVDGQSSEK 246
Query: 185 TKGDDGLIRGKRFSKEEDEMVKKSVTEYIEEHGLGDEGLQKVLHCRE------------- 244
TK DDGLIRGKRFSKEEDEMVKK+V EYIEEHGLGDEGL+KVLHCRE
Sbjct: 247 TKQDDGLIRGKRFSKEEDEMVKKAVLEYIEEHGLGDEGLKKVLHCREFPEVKNCWKDIGK 306
Query: 245 -----PYLSVYYRAHILFERGETRKWTKEEYEIVRKFHNKHGSDWKALAD---------- 304
PYLSVYYRAHILFER + RKWT EEYE+VRKFH+KHGSDWK LAD
Sbjct: 307 ALSWRPYLSVYYRAHILFERDDKRKWTPEEYELVRKFHDKHGSDWKVLADALGKHRFHVK 366
Query: 305 --------------------YQKLFDLVSTDLRIKAYEEKKSKHGMLRDNICWGEISDRL 364
YQKLFDLV+TDLR+KA+EEKKSKHGMLRDNICWG ISD+L
Sbjct: 367 DTWRRIKLPNMKKGHWTQDEYQKLFDLVNTDLRLKAFEEKKSKHGMLRDNICWGAISDKL 426
Query: 365 STRSTALCCQKWYRQLTSPMVAEDEWADVDDYWLVDALSTLDAFSIEDVEWDQLLEHRNG 422
STRSTALCCQKWYRQLTSPMVAEDEWADVDDY L+DALS+LDA SIEDVEWDQLL+HRNG
Sbjct: 427 STRSTALCCQKWYRQLTSPMVAEDEWADVDDYHLIDALSSLDACSIEDVEWDQLLDHRNG 486
BLAST of Sed0019703 vs. NCBI nr
Match:
TYK17559.1 (RNA polymerase I termination factor [Cucumis melo var. makuwa])
HSP 1 Score: 527.3 bits (1357), Expect = 1.2e-145
Identity = 299/462 (64.72%), Postives = 333/462 (72.08%), Query Frame = 0
Query: 9 KRRRGGRNKKPIRTSRQKIVESETEPLHKKEETETVTEVCVKKDEEMEMPKKKEKKKKAK 68
K+R+ + + +++ +ES+ EP +KEE E+ TE VKKDEE K KKKKAK
Sbjct: 92 KKRKKQKEHNTQKDEQKEEIESDAEPGVRKEEIESETETYVKKDEE------KPKKKKAK 151
Query: 69 LSEGIDGECCKTGPDRMENVNSREGNKKKKQIIEDSRESYLHINK-KKRKTTKYVESGSQ 128
LSEGIDG K PD S + KKKKQ EDS ES I K KKRK T
Sbjct: 152 LSEGIDGNNHKREPD------SGKEKKKKKQKTEDSTESSSPITKEKKRKKT-------- 211
Query: 129 EKVHEEGAGLTENDDIGGSSERPSPKGSSKKVRFSEDVEIFPLVDGQSNGKTKGDDGLIR 188
EKVHE GAGL EN +I S E+ SP+GSSKKVRFSEDVEIFPLVD +S+GKTK DDGLIR
Sbjct: 212 EKVHEGGAGLRENKEISSSPEKQSPEGSSKKVRFSEDVEIFPLVDDRSSGKTKEDDGLIR 271
Query: 189 GKRFSKEEDEMVKKSVTEYIEEHGLGDEGLQKVLHCRE------------------PYLS 248
GKRFSKEEDE+VKK+V EYIE+H LGDEGL+ VLHCRE PYLS
Sbjct: 272 GKRFSKEEDEIVKKAVFEYIEKHALGDEGLKMVLHCREYPEVKSCWKDIGKAIPYRPYLS 331
Query: 249 VYYRAHILFERGETRKWTKEEYEIVRKFHNKHGSDWKALAD------------------- 308
VYYRAHILFER ETRKWT EEYE VRKFH++HGSDWKALAD
Sbjct: 332 VYYRAHILFERDETRKWTPEEYEFVRKFHDEHGSDWKALADVLGKHRFHVKDTWRRIKLP 391
Query: 309 -----------YQKLFDLVSTDLRIKAYEEKKSKHGMLRDNICWGEISDRLSTRSTALCC 368
YQKLFDLV+ DLR+KA EEK+SKHGMLRDNICWG ISD LSTRSTALCC
Sbjct: 392 NMKKGQWTQDEYQKLFDLVNKDLRLKASEEKRSKHGMLRDNICWGAISDVLSTRSTALCC 451
Query: 369 QKWYRQLTSPMVAEDEWADVDDYWLVDALSTLDAFSIEDVEWDQLLEHRNGDVCRKRWFQ 422
QKWYRQLTSPMVAE+EWADVDDY LVDALS+LDA SIEDVEWDQLLEHR+GDVCRKRW Q
Sbjct: 452 QKWYRQLTSPMVAENEWADVDDYRLVDALSSLDACSIEDVEWDQLLEHRDGDVCRKRWSQ 511
BLAST of Sed0019703 vs. NCBI nr
Match:
XP_008438110.1 (PREDICTED: RNA polymerase I termination factor [Cucumis melo])
HSP 1 Score: 527.3 bits (1357), Expect = 1.2e-145
Identity = 299/462 (64.72%), Postives = 333/462 (72.08%), Query Frame = 0
Query: 9 KRRRGGRNKKPIRTSRQKIVESETEPLHKKEETETVTEVCVKKDEEMEMPKKKEKKKKAK 68
K+R+ + + +++ +ES+ EP +KEE E+ TE VKKDEE K KKKKAK
Sbjct: 92 KKRKKQKEHNTQKDEQKEEIESDAEPGVRKEEIESETETYVKKDEE------KPKKKKAK 151
Query: 69 LSEGIDGECCKTGPDRMENVNSREGNKKKKQIIEDSRESYLHINK-KKRKTTKYVESGSQ 128
LSEGIDG K PD S + KKKKQ EDS ES I K KKRK T
Sbjct: 152 LSEGIDGNNHKREPD------SGKEKKKKKQKTEDSTESSSPITKEKKRKKT-------- 211
Query: 129 EKVHEEGAGLTENDDIGGSSERPSPKGSSKKVRFSEDVEIFPLVDGQSNGKTKGDDGLIR 188
EKVHE GAGL EN +I S E+ SP+GSSKKVRFSEDVEIFPLVD +S+GKTK DDGLIR
Sbjct: 212 EKVHEGGAGLRENKEISSSPEKQSPEGSSKKVRFSEDVEIFPLVDDRSSGKTKEDDGLIR 271
Query: 189 GKRFSKEEDEMVKKSVTEYIEEHGLGDEGLQKVLHCRE------------------PYLS 248
GKRFSKEEDE+VKK+V EYIE+H LGDEGL+ VLHCRE PYLS
Sbjct: 272 GKRFSKEEDEIVKKAVFEYIEKHALGDEGLKMVLHCREYPEVKSCWKDIGKAIPYRPYLS 331
Query: 249 VYYRAHILFERGETRKWTKEEYEIVRKFHNKHGSDWKALAD------------------- 308
VYYRAHILFER ETRKWT EEYE VRKFH++HGSDWKALAD
Sbjct: 332 VYYRAHILFERDETRKWTPEEYEFVRKFHDEHGSDWKALADVLGKHRFHVKDTWRRIKLP 391
Query: 309 -----------YQKLFDLVSTDLRIKAYEEKKSKHGMLRDNICWGEISDRLSTRSTALCC 368
YQKLFDLV+ DLR+KA EEK+SKHGMLRDNICWG ISD LSTRSTALCC
Sbjct: 392 NMKKGQWTQDEYQKLFDLVNKDLRLKASEEKRSKHGMLRDNICWGAISDVLSTRSTALCC 451
Query: 369 QKWYRQLTSPMVAEDEWADVDDYWLVDALSTLDAFSIEDVEWDQLLEHRNGDVCRKRWFQ 422
QKWYRQLTSPMVAE+EWADVDDY LVDALS+LDA SIEDVEWDQLLEHR+GDVCRKRW Q
Sbjct: 452 QKWYRQLTSPMVAENEWADVDDYRLVDALSSLDACSIEDVEWDQLLEHRDGDVCRKRWSQ 511
BLAST of Sed0019703 vs. ExPASy TrEMBL
Match:
A0A6J1D0X2 (cyclin-D-binding Myb-like transcription factor 1 isoform X2 OS=Momordica charantia OX=3673 GN=LOC111016278 PE=4 SV=1)
HSP 1 Score: 548.1 bits (1411), Expect = 3.2e-152
Identity = 307/471 (65.18%), Postives = 348/471 (73.89%), Query Frame = 0
Query: 5 KRMTKRRRGGRNKKPIRTSRQKIVESETEPLHK----KEETETVTEVCVKKDEEMEMPKK 64
++ K+++ + K + ++ +ESETE K KEE E TE CV+KDEEM+M
Sbjct: 45 EKKEKKKKKRKEHKIRKDDHKEEIESETEHCVKKDEEKEEIEPETEPCVEKDEEMQM--- 104
Query: 65 KEKKKKAKLSEGIDGECCKTGPDRMENVNSREGNKKKKQIIEDSRE-SYLHINK-KKRKT 124
++KK LSEG+ + K G D + +E KKKKQ +EDSRE S L INK KKRK
Sbjct: 105 -QEKKNDNLSEGLHRKSHKRGTD-----SGKEKKKKKKQKVEDSRESSCLPINKEKKRKK 164
Query: 125 TKYVESGSQEKVHEEGAGLTENDDIGGSSERPSPKGSSKKVRFSEDVEIFPLVDGQSNGK 184
TK+VE GS EKVHE GAGL EN DI S+R SPKGSSKKV FS+DVEIFPLVDGQS+ K
Sbjct: 165 TKFVEDGSPEKVHEGGAGLRENGDIASPSKRLSPKGSSKKVSFSDDVEIFPLVDGQSSEK 224
Query: 185 TKGDDGLIRGKRFSKEEDEMVKKSVTEYIEEHGLGDEGLQKVLHCRE------------- 244
TK DDGLIRGKRFSKEEDEMVKK+V EYIEEHGLGDEGL+KVLHCRE
Sbjct: 225 TKQDDGLIRGKRFSKEEDEMVKKAVLEYIEEHGLGDEGLKKVLHCREFPEVKNCWKDIGK 284
Query: 245 -----PYLSVYYRAHILFERGETRKWTKEEYEIVRKFHNKHGSDWKALAD---------- 304
PYLSVYYRAHILFER + RKWT EEYE+VRKFH+KHGSDWK LAD
Sbjct: 285 ALSWRPYLSVYYRAHILFERDDKRKWTPEEYELVRKFHDKHGSDWKVLADALGKHRFHVK 344
Query: 305 --------------------YQKLFDLVSTDLRIKAYEEKKSKHGMLRDNICWGEISDRL 364
YQKLFDLV+TDLR+KA+EEKKSKHGMLRDNICWG ISD+L
Sbjct: 345 DTWRRIKLPNMKKGHWTQDEYQKLFDLVNTDLRLKAFEEKKSKHGMLRDNICWGAISDKL 404
Query: 365 STRSTALCCQKWYRQLTSPMVAEDEWADVDDYWLVDALSTLDAFSIEDVEWDQLLEHRNG 422
STRSTALCCQKWYRQLTSPMVAEDEWADVDDY L+DALS+LDA SIEDVEWDQLL+HRNG
Sbjct: 405 STRSTALCCQKWYRQLTSPMVAEDEWADVDDYHLIDALSSLDACSIEDVEWDQLLDHRNG 464
BLAST of Sed0019703 vs. ExPASy TrEMBL
Match:
A0A6J1CZQ9 (RNA polymerase I termination factor isoform X1 OS=Momordica charantia OX=3673 GN=LOC111016278 PE=4 SV=1)
HSP 1 Score: 548.1 bits (1411), Expect = 3.2e-152
Identity = 307/471 (65.18%), Postives = 348/471 (73.89%), Query Frame = 0
Query: 5 KRMTKRRRGGRNKKPIRTSRQKIVESETEPLHK----KEETETVTEVCVKKDEEMEMPKK 64
++ K+++ + K + ++ +ESETE K KEE E TE CV+KDEEM+M
Sbjct: 67 EKKEKKKKKRKEHKIRKDDHKEEIESETEHCVKKDEEKEEIEPETEPCVEKDEEMQM--- 126
Query: 65 KEKKKKAKLSEGIDGECCKTGPDRMENVNSREGNKKKKQIIEDSRE-SYLHINK-KKRKT 124
++KK LSEG+ + K G D + +E KKKKQ +EDSRE S L INK KKRK
Sbjct: 127 -QEKKNDNLSEGLHRKSHKRGTD-----SGKEKKKKKKQKVEDSRESSCLPINKEKKRKK 186
Query: 125 TKYVESGSQEKVHEEGAGLTENDDIGGSSERPSPKGSSKKVRFSEDVEIFPLVDGQSNGK 184
TK+VE GS EKVHE GAGL EN DI S+R SPKGSSKKV FS+DVEIFPLVDGQS+ K
Sbjct: 187 TKFVEDGSPEKVHEGGAGLRENGDIASPSKRLSPKGSSKKVSFSDDVEIFPLVDGQSSEK 246
Query: 185 TKGDDGLIRGKRFSKEEDEMVKKSVTEYIEEHGLGDEGLQKVLHCRE------------- 244
TK DDGLIRGKRFSKEEDEMVKK+V EYIEEHGLGDEGL+KVLHCRE
Sbjct: 247 TKQDDGLIRGKRFSKEEDEMVKKAVLEYIEEHGLGDEGLKKVLHCREFPEVKNCWKDIGK 306
Query: 245 -----PYLSVYYRAHILFERGETRKWTKEEYEIVRKFHNKHGSDWKALAD---------- 304
PYLSVYYRAHILFER + RKWT EEYE+VRKFH+KHGSDWK LAD
Sbjct: 307 ALSWRPYLSVYYRAHILFERDDKRKWTPEEYELVRKFHDKHGSDWKVLADALGKHRFHVK 366
Query: 305 --------------------YQKLFDLVSTDLRIKAYEEKKSKHGMLRDNICWGEISDRL 364
YQKLFDLV+TDLR+KA+EEKKSKHGMLRDNICWG ISD+L
Sbjct: 367 DTWRRIKLPNMKKGHWTQDEYQKLFDLVNTDLRLKAFEEKKSKHGMLRDNICWGAISDKL 426
Query: 365 STRSTALCCQKWYRQLTSPMVAEDEWADVDDYWLVDALSTLDAFSIEDVEWDQLLEHRNG 422
STRSTALCCQKWYRQLTSPMVAEDEWADVDDY L+DALS+LDA SIEDVEWDQLL+HRNG
Sbjct: 427 STRSTALCCQKWYRQLTSPMVAEDEWADVDDYHLIDALSSLDACSIEDVEWDQLLDHRNG 486
BLAST of Sed0019703 vs. ExPASy TrEMBL
Match:
A0A5A7U5V1 (RNA polymerase I termination factor OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold171G002290 PE=4 SV=1)
HSP 1 Score: 527.3 bits (1357), Expect = 5.8e-146
Identity = 299/462 (64.72%), Postives = 333/462 (72.08%), Query Frame = 0
Query: 9 KRRRGGRNKKPIRTSRQKIVESETEPLHKKEETETVTEVCVKKDEEMEMPKKKEKKKKAK 68
K+R+ + + +++ +ES+ EP +KEE E+ TE VKKDEE K KKKKAK
Sbjct: 98 KKRKKQKEHNTQKDEQKEEIESDAEPGVRKEEIESETETYVKKDEE------KPKKKKAK 157
Query: 69 LSEGIDGECCKTGPDRMENVNSREGNKKKKQIIEDSRESYLHINK-KKRKTTKYVESGSQ 128
LSEGIDG K PD S + KKKKQ EDS ES I K KKRK T
Sbjct: 158 LSEGIDGNNHKREPD------SGKEKKKKKQKTEDSTESSSPITKEKKRKKT-------- 217
Query: 129 EKVHEEGAGLTENDDIGGSSERPSPKGSSKKVRFSEDVEIFPLVDGQSNGKTKGDDGLIR 188
EKVHE GAGL EN +I S E+ SP+GSSKKVRFSEDVEIFPLVD +S+GKTK DDGLIR
Sbjct: 218 EKVHEGGAGLRENKEISSSPEKQSPEGSSKKVRFSEDVEIFPLVDDRSSGKTKEDDGLIR 277
Query: 189 GKRFSKEEDEMVKKSVTEYIEEHGLGDEGLQKVLHCRE------------------PYLS 248
GKRFSKEEDE+VKK+V EYIE+H LGDEGL+ VLHCRE PYLS
Sbjct: 278 GKRFSKEEDEIVKKAVFEYIEKHALGDEGLKMVLHCREYPEVKSCWKDIGKAIPYRPYLS 337
Query: 249 VYYRAHILFERGETRKWTKEEYEIVRKFHNKHGSDWKALAD------------------- 308
VYYRAHILFER ETRKWT EEYE VRKFH++HGSDWKALAD
Sbjct: 338 VYYRAHILFERDETRKWTPEEYEFVRKFHDEHGSDWKALADVLGKHRFHVKDTWRRIKLP 397
Query: 309 -----------YQKLFDLVSTDLRIKAYEEKKSKHGMLRDNICWGEISDRLSTRSTALCC 368
YQKLFDLV+ DLR+KA EEK+SKHGMLRDNICWG ISD LSTRSTALCC
Sbjct: 398 NMKKGQWTQDEYQKLFDLVNKDLRLKASEEKRSKHGMLRDNICWGAISDVLSTRSTALCC 457
Query: 369 QKWYRQLTSPMVAEDEWADVDDYWLVDALSTLDAFSIEDVEWDQLLEHRNGDVCRKRWFQ 422
QKWYRQLTSPMVAE+EWADVDDY LVDALS+LDA SIEDVEWDQLLEHR+GDVCRKRW Q
Sbjct: 458 QKWYRQLTSPMVAENEWADVDDYRLVDALSSLDACSIEDVEWDQLLEHRDGDVCRKRWSQ 517
BLAST of Sed0019703 vs. ExPASy TrEMBL
Match:
A0A5D3D3K4 (RNA polymerase I termination factor OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold434G004290 PE=4 SV=1)
HSP 1 Score: 527.3 bits (1357), Expect = 5.8e-146
Identity = 299/462 (64.72%), Postives = 333/462 (72.08%), Query Frame = 0
Query: 9 KRRRGGRNKKPIRTSRQKIVESETEPLHKKEETETVTEVCVKKDEEMEMPKKKEKKKKAK 68
K+R+ + + +++ +ES+ EP +KEE E+ TE VKKDEE K KKKKAK
Sbjct: 92 KKRKKQKEHNTQKDEQKEEIESDAEPGVRKEEIESETETYVKKDEE------KPKKKKAK 151
Query: 69 LSEGIDGECCKTGPDRMENVNSREGNKKKKQIIEDSRESYLHINK-KKRKTTKYVESGSQ 128
LSEGIDG K PD S + KKKKQ EDS ES I K KKRK T
Sbjct: 152 LSEGIDGNNHKREPD------SGKEKKKKKQKTEDSTESSSPITKEKKRKKT-------- 211
Query: 129 EKVHEEGAGLTENDDIGGSSERPSPKGSSKKVRFSEDVEIFPLVDGQSNGKTKGDDGLIR 188
EKVHE GAGL EN +I S E+ SP+GSSKKVRFSEDVEIFPLVD +S+GKTK DDGLIR
Sbjct: 212 EKVHEGGAGLRENKEISSSPEKQSPEGSSKKVRFSEDVEIFPLVDDRSSGKTKEDDGLIR 271
Query: 189 GKRFSKEEDEMVKKSVTEYIEEHGLGDEGLQKVLHCRE------------------PYLS 248
GKRFSKEEDE+VKK+V EYIE+H LGDEGL+ VLHCRE PYLS
Sbjct: 272 GKRFSKEEDEIVKKAVFEYIEKHALGDEGLKMVLHCREYPEVKSCWKDIGKAIPYRPYLS 331
Query: 249 VYYRAHILFERGETRKWTKEEYEIVRKFHNKHGSDWKALAD------------------- 308
VYYRAHILFER ETRKWT EEYE VRKFH++HGSDWKALAD
Sbjct: 332 VYYRAHILFERDETRKWTPEEYEFVRKFHDEHGSDWKALADVLGKHRFHVKDTWRRIKLP 391
Query: 309 -----------YQKLFDLVSTDLRIKAYEEKKSKHGMLRDNICWGEISDRLSTRSTALCC 368
YQKLFDLV+ DLR+KA EEK+SKHGMLRDNICWG ISD LSTRSTALCC
Sbjct: 392 NMKKGQWTQDEYQKLFDLVNKDLRLKASEEKRSKHGMLRDNICWGAISDVLSTRSTALCC 451
Query: 369 QKWYRQLTSPMVAEDEWADVDDYWLVDALSTLDAFSIEDVEWDQLLEHRNGDVCRKRWFQ 422
QKWYRQLTSPMVAE+EWADVDDY LVDALS+LDA SIEDVEWDQLLEHR+GDVCRKRW Q
Sbjct: 452 QKWYRQLTSPMVAENEWADVDDYRLVDALSSLDACSIEDVEWDQLLEHRDGDVCRKRWSQ 511
BLAST of Sed0019703 vs. ExPASy TrEMBL
Match:
A0A1S3AVK4 (RNA polymerase I termination factor OS=Cucumis melo OX=3656 GN=LOC103483314 PE=4 SV=1)
HSP 1 Score: 527.3 bits (1357), Expect = 5.8e-146
Identity = 299/462 (64.72%), Postives = 333/462 (72.08%), Query Frame = 0
Query: 9 KRRRGGRNKKPIRTSRQKIVESETEPLHKKEETETVTEVCVKKDEEMEMPKKKEKKKKAK 68
K+R+ + + +++ +ES+ EP +KEE E+ TE VKKDEE K KKKKAK
Sbjct: 92 KKRKKQKEHNTQKDEQKEEIESDAEPGVRKEEIESETETYVKKDEE------KPKKKKAK 151
Query: 69 LSEGIDGECCKTGPDRMENVNSREGNKKKKQIIEDSRESYLHINK-KKRKTTKYVESGSQ 128
LSEGIDG K PD S + KKKKQ EDS ES I K KKRK T
Sbjct: 152 LSEGIDGNNHKREPD------SGKEKKKKKQKTEDSTESSSPITKEKKRKKT-------- 211
Query: 129 EKVHEEGAGLTENDDIGGSSERPSPKGSSKKVRFSEDVEIFPLVDGQSNGKTKGDDGLIR 188
EKVHE GAGL EN +I S E+ SP+GSSKKVRFSEDVEIFPLVD +S+GKTK DDGLIR
Sbjct: 212 EKVHEGGAGLRENKEISSSPEKQSPEGSSKKVRFSEDVEIFPLVDDRSSGKTKEDDGLIR 271
Query: 189 GKRFSKEEDEMVKKSVTEYIEEHGLGDEGLQKVLHCRE------------------PYLS 248
GKRFSKEEDE+VKK+V EYIE+H LGDEGL+ VLHCRE PYLS
Sbjct: 272 GKRFSKEEDEIVKKAVFEYIEKHALGDEGLKMVLHCREYPEVKSCWKDIGKAIPYRPYLS 331
Query: 249 VYYRAHILFERGETRKWTKEEYEIVRKFHNKHGSDWKALAD------------------- 308
VYYRAHILFER ETRKWT EEYE VRKFH++HGSDWKALAD
Sbjct: 332 VYYRAHILFERDETRKWTPEEYEFVRKFHDEHGSDWKALADVLGKHRFHVKDTWRRIKLP 391
Query: 309 -----------YQKLFDLVSTDLRIKAYEEKKSKHGMLRDNICWGEISDRLSTRSTALCC 368
YQKLFDLV+ DLR+KA EEK+SKHGMLRDNICWG ISD LSTRSTALCC
Sbjct: 392 NMKKGQWTQDEYQKLFDLVNKDLRLKASEEKRSKHGMLRDNICWGAISDVLSTRSTALCC 451
Query: 369 QKWYRQLTSPMVAEDEWADVDDYWLVDALSTLDAFSIEDVEWDQLLEHRNGDVCRKRWFQ 422
QKWYRQLTSPMVAE+EWADVDDY LVDALS+LDA SIEDVEWDQLLEHR+GDVCRKRW Q
Sbjct: 452 QKWYRQLTSPMVAENEWADVDDYRLVDALSSLDACSIEDVEWDQLLEHRDGDVCRKRWSQ 511
BLAST of Sed0019703 vs. TAIR 10
Match:
AT5G41020.1 (myb family transcription factor )
HSP 1 Score: 288.1 bits (736), Expect = 1.1e-77
Identity = 182/469 (38.81%), Postives = 256/469 (54.58%), Query Frame = 0
Query: 4 IKRMTKRRRGGRNKKPIRTSRQKIVESETEPLHKKEETETVTEVCVKKDEEMEMPKKKEK 63
+KR K+ + I + V + + K+++T+ E + K+ K+K
Sbjct: 135 VKRKKKKSKKESGGDVIENTESSKVSDKKKGKRKRDDTDLGAEENIDKE-----VKRKNN 194
Query: 64 KKKAKLSEGIDGECCKTGPDRMENVNSREGNKKKKQIIEDS--RESYLHINKKKRKTTKY 123
KKK + ++ +++ N + +KKK+ EDS E+ L+ K +K K
Sbjct: 195 KKKPSVDSDVE-------DINLDSTNDGKKKRKKKKQSEDSETEENGLNSTKDAKKRRKK 254
Query: 124 VESGSQEKVHEEGAGLTENDDIGGSSERPSPKGSSKKVRFSEDVEIFPLVDGQSNGKTKG 183
+ Q +V E ++D+ + +P SSK+V+FS+ VE FP D + T+
Sbjct: 255 KKKKKQSEVSEAEEKSDKSDE-----DLTTPSTSSKRVKFSDQVEFFPSDDDEG---TED 314
Query: 184 DD----GLIRGKRFSKEEDEMVKKSVTEYIEEHGLGDEGLQKVLHCR------------- 243
DD ++RGKRF+KEEDEMVK +V EYI+ H LGDEG++ V+ C+
Sbjct: 315 DDEEEVKVVRGKRFTKEEDEMVKNAVLEYIDNHALGDEGIKMVMECKAYPQLKGCWKEIT 374
Query: 244 -----EPYLSVYYRAHILFERGETRKWTKEEYEIVRKFHNKHGSDWKALAD--------- 303
Y SVY+RAH +FE G WTKE+ E+V +F HG+DWK LAD
Sbjct: 375 SALPWRTYNSVYHRAHTIFEAGSQGIWTKEDIELVMEFQKTHGNDWKTLADAMGKHRKHV 434
Query: 304 ---------------------YQKLFDLVSTDLRIKAYEEKKSKHGMLRDNICWGEISDR 363
YQ LFDLV+ DLR+KA++EK SKHGML+DNI W ISD
Sbjct: 435 KDAWRRGRLAGKKKGHWMREEYQNLFDLVNKDLRMKAFKEKHSKHGMLKDNIPWMAISDV 494
Query: 364 LSTRSTALCCQKWYRQLTSPMVAEDEWADVDDYWLVDALSTLDAFSIEDVEWDQLLEHRN 419
L TR CCQKWY QL SPMVA+ WA+VDDY L++ L LDA I+DV+WD LLE+R+
Sbjct: 495 LETRDHVTCCQKWYEQLISPMVAKGMWANVDDYRLLEELLKLDAACIDDVDWDNLLENRD 554
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
XP_038879166.1 | 5.9e-153 | 66.09 | cyclin-D-binding Myb-like transcription factor 1 isoform X1 [Benincasa hispida] ... | [more] |
XP_022147286.1 | 6.5e-152 | 65.18 | cyclin-D-binding Myb-like transcription factor 1 isoform X2 [Momordica charantia... | [more] |
XP_022147285.1 | 6.5e-152 | 65.18 | RNA polymerase I termination factor isoform X1 [Momordica charantia] | [more] |
TYK17559.1 | 1.2e-145 | 64.72 | RNA polymerase I termination factor [Cucumis melo var. makuwa] | [more] |
XP_008438110.1 | 1.2e-145 | 64.72 | PREDICTED: RNA polymerase I termination factor [Cucumis melo] | [more] |
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
A0A6J1D0X2 | 3.2e-152 | 65.18 | cyclin-D-binding Myb-like transcription factor 1 isoform X2 OS=Momordica charant... | [more] |
A0A6J1CZQ9 | 3.2e-152 | 65.18 | RNA polymerase I termination factor isoform X1 OS=Momordica charantia OX=3673 GN... | [more] |
A0A5A7U5V1 | 5.8e-146 | 64.72 | RNA polymerase I termination factor OS=Cucumis melo var. makuwa OX=1194695 GN=E6... | [more] |
A0A5D3D3K4 | 5.8e-146 | 64.72 | RNA polymerase I termination factor OS=Cucumis melo var. makuwa OX=1194695 GN=E5... | [more] |
A0A1S3AVK4 | 5.8e-146 | 64.72 | RNA polymerase I termination factor OS=Cucumis melo OX=3656 GN=LOC103483314 PE=4... | [more] |
Match Name | E-value | Identity | Description | |
AT5G41020.1 | 1.1e-77 | 38.81 | myb family transcription factor | [more] |