Sed0019702 (gene) Chayote v1

Overview


Name	Sed0019702
Type	gene
Organism	Sechium edule (Chayote v1)
Description	AP complex subunit sigma
Location	LG13: 20883302 .. 20885223 (-)
RNA-Seq Expression	Sed0019702
Synteny	Sed0019702

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGTTATTATTAAAACTCAAATTTCGAATCACTCATTTACATCCAAACACCTCCTAACAACTTTTTTTTTTTTCTCAGAAACAAATTAGCCTATGACATAGTTGAACTTTGAAAACGGCAAACCCAAAATCCAACTGGAGCTGGATTTCATCGATCTGCATTCGCCGTTTTCAAAAATTTGTGTGTTGATTTTTCCCATTTTGATGATTTTTTTGTGGTAGTTTCAGATTGTAAGGGTTTAACATTTGAGTTATTTTGGCAGATCCGGTTCATAGTTTTGCACAACAGGCAAGGCAAGACCCGTCGAACTAAGTATTACGTTCCCTCGAGGATTCAGAGAAGCACAAGGTCGAGTACGAGGTATTTTTAATTCCTTTGTTAATTTTTGTTTCTTAGGGCTCGTTTGATAACCATTTTGTTTTTCATTTTTTGTTTTTGAAATTTAAGTCTACAATAACTACCTGACTATAGTTTTTTTTCTTATTTGATATCTACATCTTACTTATATTTTAAGAAACAAAACCAAAATTTGAAAACAAAAAAAAGTAGCTTCCAAAAGCTTGTTTTTGTTTTTGAAATTTGGTTAGTATTCACCTACTTTTTTAATAAAAGATGTATACATTGTAGGAAAGATGGAGCACATGGTAGGAAATTTTAGTAGAAATAAGCTTAAATTTCATAAACCAAAAACAAGAAACCAAATGGTTATCGAACGGGGTCTTAATTCTCTGATTTCAATTCGTTCTTTCTGGGCTAAGTTCTACGTTTTTTTTTCTTGCATTCTAGGTTCATCGATTAGTGGTAAATAGAGATCCCTAGTTCACCAATTTTGTTGAGGTGAGAGGTTTTGTTATGTTTATGTTGGTTTATGTGATAAAATTTTAATCTTATGTTGTTGCGTTCCATTGTTTGTTCAAATTCGAAACTTCATTGGATTTTAGTCATTTTTTGTTGAAGTGGAATGGAATTGGAAATCCATCTTTTAACCATGTTCTCTGCTCTCCTTGAATTCTTGATTTTTTTTTTCTTTTTGATATCTGTGAGTGTATGGGCCCACTTACTGACTATTCTCATGAGATAAATCGCTTGATCATATAACATTCAGATGTAAGGAAAATCCAGTGATCACCATGGACTGAACCCACAACTTTTTCTTTTTTGGATATCTATAATGAGTGTCTGGACCAGTTTACGCGCTCTTAAACTTTTCTCACAAGTCATACTGCATAACCATACAACATTTGGATCTCAAGGAAGCCTTTAGGAAATTATTTCATAGGTAGGTGGTCATCATAGATTAAACCCATCACCTTTTAGTTAACCACTAGACCACTTTATGATGACAACACCTTGAATCTCCAAGATCCTTTTTTATCAGTAGTTAAGTCTATGATGGTTGAATTCATCCATTTTATGTAATTGTTTATTTGATGTTTGTATGTTATCCATGGATTTTTCTTACAAACAAAGAGGTTGATGGTTATTAGTTAAGGAAATGGTAACTGTAATCTTAGAGGGTCTATGTCAACTCGTTGTAGATAGAGGGTTTAGTTGAGGTGCGCGTAAGGTGGTCTAGACACTCACGGATATTAAAAGATACATGTAGATAAGAGAGTATGTTCTTCGCTATTCTTGATTAGGTTTTATTTCATTTTAGTTGACATTTTTTAGTTTTCTTTTGGGCATGAATCTTATTAACATTTGTTTACTTAATTTTGTGCATTTTATAATGTGTTCATCTGGTTTTTGTCTAAGCTTTAGCTTATGCAACCACAACCATTTTTTTTGTAGTTTCGAACACACAAGGTACAGGCAATATGCAGGGTTATTTTTCTCTATTTGTTTGTGGAGATTTTGGATCATTTCTTCAGCAATGTGTGTGAGCTCGATTTGGTTTTTAACTTTCACAAGGTTTGTTGA

mRNA sequence

ATGATATTACGTTCCCTCGAGGATTCAGAGAAGCACAAGGTCGAGTACGAGTTCACCAATTTTGTTGAGTTTCGAACACACAAGGTACAGGCAATATGCAGGGTTATTTTTCTCTATTTGTTTGTGGAGATTTTGGATCATTTCTTCAGCAATGTGTGTGAGCTCGATTTGGTTTTTAACTTTCACAAGGTTTGTTGA

Coding sequence (CDS)

ATGATATTACGTTCCCTCGAGGATTCAGAGAAGCACAAGGTCGAGTACGAGTTCACCAATTTTGTTGAGTTTCGAACACACAAGGTACAGGCAATATGCAGGGTTATTTTTCTCTATTTGTTTGTGGAGATTTTGGATCATTTCTTCAGCAATGTGTGTGAGCTCGATTTGGTTTTTAACTTTCACAAGGTTTGTTGA

Protein sequence

MILRSLEDSEKHKVEYEFTNFVEFRTHKVQAICRVIFLYLFVEILDHFFSNVCELDLVFNFHKVC

Homology

[Close]

BLAST of Sed0019702 vs. NCBI nr
Match: KAF9853533.1 (hypothetical protein H0E87_005497 [Populus deltoides])

HSP 1 Score: 85.5 bits (210), Expect = 1.8e-13
Identity = 53/89 (59.55%), Postives = 56/89 (62.92%), Query Frame = 0


Query: 6   LEDSEKHKVEYE-----------FTNFVEFRTHKV---------QAICRVI--------- 65
           LEDSEKHKVEYE           FTNFVEFRTHKV          A+C  I         
Sbjct: 23  LEDSEKHKVEYEVHRLVVNRDPKFTNFVEFRTHKVIYRRYAGLFFALCVDITDNELAYLE 82

[Close]

BLAST of Sed0019702 vs. NCBI nr
Match: OAY50587.1 (hypothetical protein MANES_05G147900v8 [Manihot esculenta])

HSP 1 Score: 84.7 bits (208), Expect = 3.2e-13
Identity = 50/89 (56.18%), Postives = 54/89 (60.67%), Query Frame = 0


Query: 6   LEDSEKHKVEYE-----------FTNFVEFRTHKV------------------QAICRVI 65
           LEDSEKHKVEYE           FTNFVEFRTHKV                    +  + 
Sbjct: 23  LEDSEKHKVEYEVHRLVVNRDPKFTNFVEFRTHKVIYRRYAGLFFSLCVDITDNELAYLE 82

[Close]

BLAST of Sed0019702 vs. NCBI nr
Match: KDO84851.1 (hypothetical protein CISIN_1g032349mg [Citrus sinensis])

HSP 1 Score: 84.7 bits (208), Expect = 3.2e-13
Identity = 50/89 (56.18%), Postives = 54/89 (60.67%), Query Frame = 0


Query: 6   LEDSEKHKVEYE-----------FTNFVEFRTHKV------------------QAICRVI 65
           LEDSEKHKVEYE           FTNFVEFRTHKV                    +  + 
Sbjct: 23  LEDSEKHKVEYEVHRLVVNRDPKFTNFVEFRTHKVIYRRYAGLFFSLCVDITDNELAYLE 82

[Close]

BLAST of Sed0019702 vs. NCBI nr
Match: CAA2993595.1 (AP-2 complex subunit sigma [Olea europaea subsp. europaea])

HSP 1 Score: 83.2 bits (204), Expect = 9.2e-13
Identity = 49/89 (55.06%), Postives = 54/89 (60.67%), Query Frame = 0


Query: 6   LEDSEKHKVEYE-----------FTNFVEFRTHKV------------------QAICRVI 65
           LE+SEKHKVEYE           FTNFVEFRTHKV                    +  + 
Sbjct: 23  LEESEKHKVEYEVHRLVVNRDPKFTNFVEFRTHKVIYRRYAGLFFSLCVDITDNELAYLE 82

[Close]

BLAST of Sed0019702 vs. NCBI nr
Match: ACI66179.1 (AP-2 complex subunit sigma-1 [Salmo salar])

HSP 1 Score: 82.8 bits (203), Expect = 1.2e-12
Identity = 53/88 (60.23%), Postives = 55/88 (62.50%), Query Frame = 0


Query: 6   LEDSEKHKVEYE-----------FTNFVEFRTHKV---------QAICRVI--------- 65
           LEDSEKHKVEYE           FTNFVEFRTHKV          AIC  I         
Sbjct: 23  LEDSEKHKVEYEVHRLVVNRDPKFTNFVEFRTHKVIYRRYAGLFFAICVDITDNELAYLE 82

[Close]

BLAST of Sed0019702 vs. ExPASy Swiss-Prot
Match: O50016 (AP-2 complex subunit sigma OS=Zea mays OX=4577 GN=AP-17 PE=2 SV=1)

HSP 1 Score: 81.6 bits (200), Expect = 3.5e-15
Identity = 52/88 (59.09%), Postives = 55/88 (62.50%), Query Frame = 0


Query: 6   LEDSEKHKVEYE-----------FTNFVEFRTHKV---------QAICRVI--------- 65
           LEDSEKHKVEYE           FTNFVEFRTHKV          +IC  I         
Sbjct: 23  LEDSEKHKVEYEVHRLVVNRDPKFTNFVEFRTHKVIYRRYAGLFFSICVDITDNELAYLE 82

[Close]

BLAST of Sed0019702 vs. ExPASy Swiss-Prot
Match: Q84WL9 (AP-2 complex subunit sigma OS=Arabidopsis thaliana OX=3702 GN=AP17 PE=2 SV=1)

HSP 1 Score: 79.7 bits (195), Expect = 1.3e-14
Identity = 48/88 (54.55%), Postives = 53/88 (60.23%), Query Frame = 0


Query: 6   LEDSEKHKVEYE-----------FTNFVEFRTHKV------------------QAICRVI 65
           LE+SEKHKVEYE           FTNFVEFRTHKV                    +  + 
Sbjct: 23  LEESEKHKVEYEVHRLVVNRDAKFTNFVEFRTHKVIYRRYAGLFFSVCVDITDNELAYLE 82

[Close]

BLAST of Sed0019702 vs. ExPASy Swiss-Prot
Match: Q54H39 (AP-2 complex subunit sigma OS=Dictyostelium discoideum OX=44689 GN=ap2s1 PE=3 SV=2)

HSP 1 Score: 58.5 bits (140), Expect = 3.2e-08
Identity = 38/87 (43.68%), Postives = 50/87 (57.47%), Query Frame = 0


Query: 7   EDSEKHKVEYE-----------FTNFVEFRTHKVQ---------AIC-----RVIF---- 65
           ED EK K+ +E           FTNFVEFRTH++          ++C       +F    
Sbjct: 24  EDVEKRKLSHEIHKIVNSRETKFTNFVEFRTHRIVYRRYAGLFFSVCVDPTDNELFCLEA 83

[Close]

BLAST of Sed0019702 vs. ExPASy Swiss-Prot
Match: Q7SAQ1 (AP-2 complex subunit sigma OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) OX=367110 GN=aps-2 PE=3 SV=1)

HSP 1 Score: 51.2 bits (121), Expect = 5.1e-06
Identity = 29/64 (45.31%), Postives = 36/64 (56.25%), Query Frame = 0


Query: 19  TNFVEFRTHKV------------------QAICRVIFLYLFVEILDHFFSNVCELDLVFN 65
           +NFVEFR HKV                    +  +  ++ FVE+LD FF NVCELDLVFN
Sbjct: 48  SNFVEFRNHKVVYRRYAGLFFCACVDTNDNELAYLEAIHFFVEVLDSFFGNVCELDLVFN 107

[Close]

BLAST of Sed0019702 vs. ExPASy Swiss-Prot
Match: Q4ICG5 (AP-2 complex subunit sigma OS=Gibberella zeae (strain ATCC MYA-4620 / CBS 123657 / FGSC 9075 / NRRL 31084 / PH-1) OX=229533 GN=APS2 PE=3 SV=1)

HSP 1 Score: 47.4 bits (111), Expect = 7.3e-05
Identity = 27/64 (42.19%), Postives = 36/64 (56.25%), Query Frame = 0


Query: 19  TNFVEFRTHKV------------------QAICRVIFLYLFVEILDHFFSNVCELDLVFN 65
           +NFVEFR +K+                    +  +  ++ FVE+LD FF NVCELDLVFN
Sbjct: 48  SNFVEFRNNKIVYRRYAGLFFCACVDTNDNELAFLEAIHFFVEVLDAFFGNVCELDLVFN 107

[Close]

BLAST of Sed0019702 vs. ExPASy TrEMBL
Match: A0A067HB09 (AP complex subunit sigma OS=Citrus sinensis OX=2711 GN=CISIN_1g032349mg PE=3 SV=1)

HSP 1 Score: 84.7 bits (208), Expect = 1.5e-13
Identity = 50/89 (56.18%), Postives = 54/89 (60.67%), Query Frame = 0


Query: 6   LEDSEKHKVEYE-----------FTNFVEFRTHKV------------------QAICRVI 65
           LEDSEKHKVEYE           FTNFVEFRTHKV                    +  + 
Sbjct: 23  LEDSEKHKVEYEVHRLVVNRDPKFTNFVEFRTHKVIYRRYAGLFFSLCVDITDNELAYLE 82

[Close]

BLAST of Sed0019702 vs. ExPASy TrEMBL
Match: A0A2C9VWA3 (AP complex subunit sigma OS=Manihot esculenta OX=3983 GN=MANES_05G147900 PE=3 SV=1)

HSP 1 Score: 84.7 bits (208), Expect = 1.5e-13
Identity = 50/89 (56.18%), Postives = 54/89 (60.67%), Query Frame = 0


Query: 6   LEDSEKHKVEYE-----------FTNFVEFRTHKV------------------QAICRVI 65
           LEDSEKHKVEYE           FTNFVEFRTHKV                    +  + 
Sbjct: 23  LEDSEKHKVEYEVHRLVVNRDPKFTNFVEFRTHKVIYRRYAGLFFSLCVDITDNELAYLE 82

[Close]

BLAST of Sed0019702 vs. ExPASy TrEMBL
Match: A0A2P2MI94 (AP complex subunit sigma OS=Rhizophora mucronata OX=61149 PE=3 SV=1)

HSP 1 Score: 84.3 bits (207), Expect = 2.0e-13
Identity = 49/89 (55.06%), Postives = 54/89 (60.67%), Query Frame = 0


Query: 6   LEDSEKHKVEYE-----------FTNFVEFRTHKV------------------QAICRVI 65
           LEDSEKHKVEYE           FTNFVEFRTHK+                    +  + 
Sbjct: 23  LEDSEKHKVEYEVHRLVVNRDPKFTNFVEFRTHKIIYRRYAGLFFSLCVDITDNELAYLE 82

[Close]

BLAST of Sed0019702 vs. ExPASy TrEMBL
Match: K7MP16 (AP complex subunit sigma OS=Glycine max OX=3847 GN=100500054 PE=3 SV=1)

HSP 1 Score: 83.2 bits (204), Expect = 4.4e-13
Identity = 48/89 (53.93%), Postives = 54/89 (60.67%), Query Frame = 0


Query: 6   LEDSEKHKVEYE-----------FTNFVEFRTHKV------------------QAICRVI 65
           LEDSEKHKVEYE           +TNFVEFRTHK+                    +  + 
Sbjct: 23  LEDSEKHKVEYEVHRLVVNRDPKYTNFVEFRTHKIIYRRYAGLFFSLCVDITDNELAYLE 82

[Close]

BLAST of Sed0019702 vs. ExPASy TrEMBL
Match: B5X5Q9 (AP complex subunit sigma OS=Salmo salar OX=8030 GN=AP2S1 PE=2 SV=1)

HSP 1 Score: 82.8 bits (203), Expect = 5.8e-13
Identity = 53/88 (60.23%), Postives = 55/88 (62.50%), Query Frame = 0


Query: 6   LEDSEKHKVEYE-----------FTNFVEFRTHKV---------QAICRVI--------- 65
           LEDSEKHKVEYE           FTNFVEFRTHKV          AIC  I         
Sbjct: 23  LEDSEKHKVEYEVHRLVVNRDPKFTNFVEFRTHKVIYRRYAGLFFAICVDITDNELAYLE 82

[Close]

BLAST of Sed0019702 vs. TAIR 10
Match: AT1G47830.1 (SNARE-like superfamily protein )

HSP 1 Score: 79.7 bits (195), Expect = 9.4e-16
Identity = 48/88 (54.55%), Postives = 53/88 (60.23%), Query Frame = 0


Query: 6   LEDSEKHKVEYE-----------FTNFVEFRTHKV------------------QAICRVI 65
           LE+SEKHKVEYE           FTNFVEFRTHKV                    +  + 
Sbjct: 23  LEESEKHKVEYEVHRLVVNRDAKFTNFVEFRTHKVIYRRYAGLFFSVCVDITDNELAYLE 82

[Close]

BLAST of Sed0019702 vs. TAIR 10
Match: AT4G35410.1 (Clathrin adaptor complex small chain family protein )

HSP 1 Score: 43.5 bits (101), Expect = 7.5e-05
Identity = 27/63 (42.86%), Postives = 35/63 (55.56%), Query Frame = 0


Query: 20  NFVEFRTHKV-------QAICRVI-----------FLYLFVEILDHFFSNVCELDLVFNF 65
           NFVE+R +KV          C  I            ++ +VEILD +F +VCELDL+FNF
Sbjct: 48  NFVEWRGYKVVYKRYASLYFCMCIDQEDNELEVLEIIHHYVEILDRYFGSVCELDLIFNF 107

[Close]

BLAST of Sed0019702 vs. TAIR 10
Match: AT4G35410.2 (Clathrin adaptor complex small chain family protein )

HSP 1 Score: 42.0 bits (97), Expect = 2.2e-04
Identity = 26/62 (41.94%), Postives = 34/62 (54.84%), Query Frame = 0


Query: 20  NFVEFRTHKV-------QAICRVI-----------FLYLFVEILDHFFSNVCELDLVFNF 64
           NFVE+R +KV          C  I            ++ +VEILD +F +VCELDL+FNF
Sbjct: 48  NFVEWRGYKVVYKRYASLYFCMCIDQEDNELEVLEIIHHYVEILDRYFGSVCELDLIFNF 107

[Close]

BLAST of Sed0019702 vs. TAIR 10
Match: AT2G17380.1 (associated protein 19 )

HSP 1 Score: 41.6 bits (96), Expect = 2.8e-04
Identity = 25/62 (40.32%), Postives = 34/62 (54.84%), Query Frame = 0


Query: 20  NFVEFRTHKV-------QAICRVI-----------FLYLFVEILDHFFSNVCELDLVFNF 64
           NF+E+R +KV          C  I            ++ +VEILD +F +VCELDL+FNF
Sbjct: 48  NFIEWRGYKVVYKRYASLYFCMCIDEADNELEVLEIIHHYVEILDRYFGSVCELDLIFNF 107

The following BLAST results are available for this feature:

BLAST of Sed0019702 vs. NCBI nr


Match Name	E-value	Identity	Description
KAF9853533.1	1.8e-13	59.55	hypothetical protein H0E87_005497 [Populus deltoides]	[more]
OAY50587.1	3.2e-13	56.18	hypothetical protein MANES_05G147900v8 [Manihot esculenta]	[more]
KDO84851.1	3.2e-13	56.18	hypothetical protein CISIN_1g032349mg [Citrus sinensis]	[more]
CAA2993595.1	9.2e-13	55.06	AP-2 complex subunit sigma [Olea europaea subsp. europaea]	[more]
ACI66179.1	1.2e-12	60.23	AP-2 complex subunit sigma-1 [Salmo salar]	[more]

BLAST of Sed0019702 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O50016	3.5e-15	59.09	AP-2 complex subunit sigma OS=Zea mays OX=4577 GN=AP-17 PE=2 SV=1	[more]
Q84WL9	1.3e-14	54.55	AP-2 complex subunit sigma OS=Arabidopsis thaliana OX=3702 GN=AP17 PE=2 SV=1	[more]
Q54H39	3.2e-08	43.68	AP-2 complex subunit sigma OS=Dictyostelium discoideum OX=44689 GN=ap2s1 PE=3 SV...	[more]
Q7SAQ1	5.1e-06	45.31	AP-2 complex subunit sigma OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A ...	[more]
Q4ICG5	7.3e-05	42.19	AP-2 complex subunit sigma OS=Gibberella zeae (strain ATCC MYA-4620 / CBS 123657...	[more]

BLAST of Sed0019702 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A067HB09	1.5e-13	56.18	AP complex subunit sigma OS=Citrus sinensis OX=2711 GN=CISIN_1g032349mg PE=3 SV=...	[more]
A0A2C9VWA3	1.5e-13	56.18	AP complex subunit sigma OS=Manihot esculenta OX=3983 GN=MANES_05G147900 PE=3 SV...	[more]
A0A2P2MI94	2.0e-13	55.06	AP complex subunit sigma OS=Rhizophora mucronata OX=61149 PE=3 SV=1	[more]
K7MP16	4.4e-13	53.93	AP complex subunit sigma OS=Glycine max OX=3847 GN=100500054 PE=3 SV=1	[more]
B5X5Q9	5.8e-13	60.23	AP complex subunit sigma OS=Salmo salar OX=8030 GN=AP2S1 PE=2 SV=1	[more]

BLAST of Sed0019702 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G47830.1	9.4e-16	54.55	SNARE-like superfamily protein	[more]
AT4G35410.1	7.5e-05	42.86	Clathrin adaptor complex small chain family protein	[more]
AT4G35410.2	2.2e-04	41.94	Clathrin adaptor complex small chain family protein	[more]
AT2G17380.1	2.8e-04	40.32	associated protein 19	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR022775	AP complex, mu/sigma subunit	PFAM	PF01217	Clat_adaptor_s	coord: 37..64 e-value: 1.7E-7 score: 31.3
None	No IPR available	GENE3D	3.30.450.60		coord: 31..65 e-value: 4.4E-8 score: 35.1
None	No IPR available	PANTHER	PTHR11753:SF44	AP-2 COMPLEX SUBUNIT SIGMA	coord: 37..64
IPR016635	Adaptor protein complex, sigma subunit	PANTHER	PTHR11753	ADAPTOR COMPLEXES SMALL SUBUNIT FAMILY	coord: 37..64
IPR011012	Longin-like domain superfamily	SUPERFAMILY	64356	SNARE-like	coord: 21..64

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0019702.1	Sed0019702.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015031	protein transport
biological_process	GO:0016192	vesicle-mediated transport
cellular_component	GO:0043231	intracellular membrane-bounded organelle
cellular_component	GO:0016020	membrane