Sed0019672 (gene) Chayote v1

Overview


Name	Sed0019672
Type	gene
Organism	Sechium edule (Chayote v1)
Description	RING-H2 finger protein ATL14-like
Location	LG13: 19332941 .. 19333706 (+)
RNA-Seq Expression	Sed0019672
Synteny	Sed0019672

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AAACCCCCAAAATTTGAAATTCCGTTGAATTTCAGCTTTCATTCAACTCAACCATGTCATCTTTTCCAATTCCCCTGCCGGAATCTTCAACACTGCAAAATCCGCCGGACACGGCGGTTGATCGGAATAGCTTCCACTTAACGACGAGAATAACTATCGCCGGCGGATTGATGCTGGTGGCGGTGATTTGTGCCGTACTGATTATGTTTCTGTTCATATTTCATTGGTACAAAACAAGAAGCGATGACGTGGAATCGAGCCATGTCCGGCGAGTTCAGCCGGAAATCGCACGGCGGTGGGCGGCGGAGGAAGGTGGCTCGGGCACCGCGACGGCGGCGTTTGGGGAAATTAAAACAGGGGAAGTTGGGGATTGTTCGATTTGTACGGAGGTGTTTGGGGAGGAAGAGATTTGTAGAGTGATTGAGAATTGCGGTCACTTTTTTCATACGGACTGTTTGGATCGGTGGTTTAGAATTGAGAGATGTTGCCCATTGTGTCGATGTGTTTGTTCATCGGATTTTGATGGTTTCAAAATTAAGCTTCAATGCCAAAACGAGCATAGTTCAATTGAGGTCTTGTACTGACACGATCGAAGTTAGAGGTTCGATTCTTTCGCTCCAGGTATTAAAAGAAAAATAAAACCAAGCTTTCATTTTCTTTGTGTTAAAAGCATAAATTCAACCTATCTATCTCTTTAAATTTGGTTTTGTTCCATTATTTAATAAGTTTGTCTATTAAGTTGACATACATGATTAGAATAAATTTG

mRNA sequence

AAACCCCCAAAATTTGAAATTCCGTTGAATTTCAGCTTTCATTCAACTCAACCATGTCATCTTTTCCAATTCCCCTGCCGGAATCTTCAACACTGCAAAATCCGCCGGACACGGCGGTTGATCGGAATAGCTTCCACTTAACGACGAGAATAACTATCGCCGGCGGATTGATGCTGGTGGCGGTGATTTGTGCCGTACTGATTATGTTTCTGTTCATATTTCATTGGTACAAAACAAGAAGCGATGACGTGGAATCGAGCCATGTCCGGCGAGTTCAGCCGGAAATCGCACGGCGGTGGGCGGCGGAGGAAGGTGGCTCGGGCACCGCGACGGCGGCGTTTGGGGAAATTAAAACAGGGGAAGTTGGGGATTGTTCGATTTGTACGGAGGTGTTTGGGGAGGAAGAGATTTGTAGAGTGATTGAGAATTGCGGTCACTTTTTTCATACGGACTGTTTGGATCGGTGGTTTAGAATTGAGAGATGTTGCCCATTGTGTCGATGTGTTTGTTCATCGGATTTTGATGGTTTCAAAATTAAGCTTCAATGCCAAAACGAGCATAGTTCAATTGAGGTCTTGTACTGACACGATCGAAGTTAGAGGTTCGATTCTTTCGCTCCAGGTATTAAAAGAAAAATAAAACCAAGCTTTCATTTTCTTTGTGTTAAAAGCATAAATTCAACCTATCTATCTCTTTAAATTTGGTTTTGTTCCATTATTTAATAAGTTTGTCTATTAAGTTGACATACATGATTAGAATAAATTTG

Coding sequence (CDS)

ATGTCATCTTTTCCAATTCCCCTGCCGGAATCTTCAACACTGCAAAATCCGCCGGACACGGCGGTTGATCGGAATAGCTTCCACTTAACGACGAGAATAACTATCGCCGGCGGATTGATGCTGGTGGCGGTGATTTGTGCCGTACTGATTATGTTTCTGTTCATATTTCATTGGTACAAAACAAGAAGCGATGACGTGGAATCGAGCCATGTCCGGCGAGTTCAGCCGGAAATCGCACGGCGGTGGGCGGCGGAGGAAGGTGGCTCGGGCACCGCGACGGCGGCGTTTGGGGAAATTAAAACAGGGGAAGTTGGGGATTGTTCGATTTGTACGGAGGTGTTTGGGGAGGAAGAGATTTGTAGAGTGATTGAGAATTGCGGTCACTTTTTTCATACGGACTGTTTGGATCGGTGGTTTAGAATTGAGAGATGTTGCCCATTGTGTCGATGTGTTTGTTCATCGGATTTTGATGGTTTCAAAATTAAGCTTCAATGCCAAAACGAGCATAGTTCAATTGAGGTCTTGTACTGA

Protein sequence

MSSFPIPLPESSTLQNPPDTAVDRNSFHLTTRITIAGGLMLVAVICAVLIMFLFIFHWYKTRSDDVESSHVRRVQPEIARRWAAEEGGSGTATAAFGEIKTGEVGDCSICTEVFGEEEICRVIENCGHFFHTDCLDRWFRIERCCPLCRCVCSSDFDGFKIKLQCQNEHSSIEVLY

Homology

[Close]

BLAST of Sed0019672 vs. NCBI nr
Match: XP_031742489.1 (RING-H2 finger protein ATL1-like [Cucumis sativus] >KAE8653253.1 hypothetical protein Csa_019970 [Cucumis sativus])

HSP 1 Score: 156.4 bits (394), Expect = 2.3e-34
Identity = 86/159 (54.09%), Postives = 102/159 (64.15%), Query Frame = 0


Query: 2   SSFPIPLPESSTLQNPPDTAVDRNSFHLTTRITIAGGLMLVAVICAVLIMFLFIFHW-YK 61
           S  P P+PES+T    P   +  + FHLTTR+TIA GLMLVAVICA++I+F+FIFH+ Y 
Sbjct: 3   SPSPPPVPESTTRPPIPPLPIHHSKFHLTTRLTIASGLMLVAVICALMILFMFIFHYCYH 62

Query: 62  TR----SDDVESSHVRRVQPEIARRWAAEEGGSGTATAAFGEIKTGEVGD-----CSICT 121
            R      D+ESS V     E        E    +    F EIKTGE+GD     C+IC 
Sbjct: 63  QRLLVVHGDIESSQVSGTAAE-----ETSEEIPASVKMGFREIKTGEIGDCDGRKCAICI 122

Query: 122 EVFGEEEICRVIENCGHFFHTDCLDRWFRIERCCPLCRC 151
           E FGEEEIC VIENCGHFFH DC++RW RIER CPLCRC
Sbjct: 123 EGFGEEEICGVIENCGHFFHRDCINRWLRIERRCPLCRC 156

[Close]

BLAST of Sed0019672 vs. NCBI nr
Match: XP_022158253.1 (RING-H2 finger protein ATL14-like [Momordica charantia])

HSP 1 Score: 133.7 bits (335), Expect = 1.6e-27
Identity = 70/136 (51.47%), Postives = 85/136 (62.50%), Query Frame = 0


Query: 17  PPDT--AVDRNSFHLTTRITIAGGLMLVAVICAVLIMFLFIFHWYKTRSDDVESSHVRRV 76
           PP T  A+ RN+FHLT R+ +A G M VAV+CA  I  +F+FH+YKTR  D ES    R 
Sbjct: 8   PPQTTAAIHRNTFHLTRRLWVASGFMFVAVVCAFSISLMFVFHYYKTRVHDTES----RS 67

Query: 77  QPEIARRWAAEEGGSGTATAAFGEIKTGEVGDCSICTEVFGEEEICRVIENCGHFFHTDC 136
           QP+ A +  A       +  A+ E      G C+IC E F EEE C VIENCGHFFH DC
Sbjct: 68  QPQTAEQIPA-------SAVAYREEIRDCGGRCAICIEGFAEEEKCGVIENCGHFFHKDC 127

Query: 137 LDRWFRIERCCPLCRC 151
           +DRW +IE  CPLCRC
Sbjct: 128 IDRWLKIESRCPLCRC 132

[Close]

BLAST of Sed0019672 vs. NCBI nr
Match: KAA0067736.1 (RING-H2 finger protein ATL52-like [Cucumis melo var. makuwa])

HSP 1 Score: 94.0 bits (232), Expect = 1.4e-15
Identity = 57/141 (40.43%), Postives = 77/141 (54.61%), Query Frame = 0


Query: 38  GLMLVAVICAVLIMFLFIFHWYK-----TRSDDVESS-HVRR-------VQPEIARR--- 97
           G + V+V+C +LI+FLF  + Y+     TR+ D+E   H  R        Q EI R+   
Sbjct: 2   GFLFVSVVCIILIIFLFHIYHYRLRLNQTRTLDIEQRLHEHRTMQLLAQTQAEIIRQRQT 61

Query: 98  -------WAAEEGGSGTATAAFGEIKTGEVGD----CSICTEVFGEEEICRVIENCGHFF 152
                     EE  S   T A+ ++K  E G     C+IC E F +EEIC V+E+CGH F
Sbjct: 62  TTQSNDTTEGEETSSAVMTVAY-KVKDNEAGGSYCCCAICIEEFEDEEICGVVESCGHCF 121

[Close]

BLAST of Sed0019672 vs. NCBI nr
Match: TYJ97407.1 (RING-H2 finger protein ATL52-like [Cucumis melo var. makuwa])

HSP 1 Score: 91.7 bits (226), Expect = 7.0e-15
Identity = 56/141 (39.72%), Postives = 76/141 (53.90%), Query Frame = 0


Query: 38  GLMLVAVICAVLIMFLFIFHWYK-----TRSDDVESS-HVRR-------VQPEIARR--- 97
           G + V+V+C +LI+FLF  + Y+     TR+ D+E   H  R        Q EI R+   
Sbjct: 2   GFLFVSVVCIILIIFLFHIYHYRLRLNQTRTLDIEQRLHEHRTMQLLAQTQAEIIRQRQT 61

Query: 98  -------WAAEEGGSGTATAAFGEIKTGEVGD----CSICTEVFGEEEICRVIENCGHFF 152
                     EE  S     A+ ++K  E G     C+IC E F +EEIC V+E+CGH F
Sbjct: 62  TTQSNDTTEGEETSSAVMKVAY-KVKDNEAGGSYCCCAICIEEFEDEEICGVVESCGHCF 121

[Close]

BLAST of Sed0019672 vs. NCBI nr
Match: XP_022158249.1 (E3 ubiquitin-protein ligase RING1-like [Momordica charantia])

HSP 1 Score: 89.0 bits (219), Expect = 4.5e-14
Identity = 62/170 (36.47%), Postives = 78/170 (45.88%), Query Frame = 0


Query: 1   MSSFPIPLPESSTLQNPPDTAVDRNSFHLTTRITIAGGLMLVAVICAVLIMFLFIFHWYK 60
           MS  P P P  S   + P T V  +      +I    G   V  IC  LI+  FI + Y 
Sbjct: 1   MSFPPTPPPSFSVQYSLPVTVVITHRSTFDPKI----GFGFVGFICFSLIVLFFILYSYH 60

Query: 61  TR--------SDDVES------------SHVRRVQPEIARRWAAEEGGSGTATAAFGEIK 120
            R         DD+ES            S   R QP    +   E   +  A     EI 
Sbjct: 61  RRIMLSQTRVYDDIESRVQVSRVFTIVLSERARQQPSPPPQTVEEASATAVAIIEAEEII 120

Query: 121 TGEVGDCSICTEVFGEEEICRVIENCGHFFHTDCLDRWFRIERCCPLCRC 151
             +  DC+IC E F E+++CRVIE CGHFFH DC+D+W  +ER CPLCRC
Sbjct: 121 DSD-RDCAICFEGFEEKQVCRVIEKCGHFFHKDCVDQWLTMERGCPLCRC 165

[Close]

BLAST of Sed0019672 vs. ExPASy Swiss-Prot
Match: Q9LZJ6 (RING-H2 finger protein ATL5 OS=Arabidopsis thaliana OX=3702 GN=ATL5 PE=2 SV=1)

HSP 1 Score: 65.5 bits (158), Expect = 7.0e-10
Identity = 43/142 (30.28%), Postives = 68/142 (47.89%), Query Frame = 0


Query: 25  NSFHLTTRITIAGGLMLVAVICA-VLIMFLFIFHWYKTRSDDVESSHVRRVQPEIARRWA 84
           N  H ++R ++ G +ML +VI   V ++ +  FH Y       ++  +RR      R  A
Sbjct: 14  NMNHGSSRYSLNGKIMLASVIILFVAVILILCFHSYARWLFRRQNRRIRRRISAHLRSLA 73

Query: 85  AEEGGSGTATAA--------------FGEIKTGE--VGDCSICTEVFGEEEICRVIENCG 144
           A    + ++++                  +KT E  + +CS+C   F E++  RV+  CG
Sbjct: 74  AARDPTQSSSSLSPLDPTVLEKIPIFVYSVKTHESPLEECSVCLSEFEEDDEGRVLPKCG 133

Query: 145 HFFHTDCLDRWFRIERCCPLCR 150
           H FH DC+D WFR    CPLCR
Sbjct: 134 HVFHVDCIDTWFRSRSSCPLCR 155

[Close]

BLAST of Sed0019672 vs. ExPASy Swiss-Prot
Match: Q8L9T5 (RING-H2 finger protein ATL2 OS=Arabidopsis thaliana OX=3702 GN=ATL2 PE=2 SV=2)

HSP 1 Score: 62.0 bits (149), Expect = 7.8e-09
Identity = 46/170 (27.06%), Postives = 73/170 (42.94%), Query Frame = 0


Query: 11  SSTLQNPPDTAVDRNSFHLTTRITIAGGLMLVAVICAVLIMFLFIF-----HWYKTRSDD 70
           +S  Q+P     + N+F  +    ++G +ML A++    ++ L +F      WY  R+  
Sbjct: 2   NSNDQDPIPFRPEDNNFSGSKTYAMSGKIMLSAIVILFFVVILMVFLHLYARWYLLRA-- 61

Query: 71  VESSHVRRVQPEIARR-----WAAEEGGSGTATAA----------------FGEIKTGEV 130
               H+RR      RR     + A+   + T+  A                F +    + 
Sbjct: 62  -RRRHLRRRSRN--RRATMVFFTADPSTAATSVVASRGLDPNVIKSLPVFTFSDETHKDP 121

Query: 131 GDCSICTEVFGEEEICRVIENCGHFFHTDCLDRWFRIERCCPLCRCVCSS 155
            +C++C   F E E  RV+ NC H FH DC+D WF     CPLCR +  S
Sbjct: 122 IECAVCLSEFEESETGRVLPNCQHTFHVDCIDMWFHSHSTCPLCRSLVES 166

[Close]

BLAST of Sed0019672 vs. ExPASy Swiss-Prot
Match: Q9LSW9 (RING-H2 finger protein ATL16 OS=Arabidopsis thaliana OX=3702 GN=ATL16 PE=2 SV=1)

HSP 1 Score: 60.8 bits (146), Expect = 1.7e-08
Identity = 24/50 (48.00%), Postives = 30/50 (60.00%), Query Frame = 0


Query: 106 DCSICTEVFGEEEICRVIENCGHFFHTDCLDRWFRIERCCPLCRCVCSSD 156
           +CS+C   F +EE  R+I NC H FH DC+D W +    CPLCR   S D
Sbjct: 137 ECSVCLSEFQDEEKLRIIPNCSHLFHIDCIDVWLQNNANCPLCRTRVSCD 186

[Close]

BLAST of Sed0019672 vs. ExPASy Swiss-Prot
Match: O22255 (RING-H2 finger protein ATL64 OS=Arabidopsis thaliana OX=3702 GN=ATL64 PE=2 SV=1)

HSP 1 Score: 60.8 bits (146), Expect = 1.7e-08
Identity = 41/141 (29.08%), Postives = 59/141 (41.84%), Query Frame = 0


Query: 28  HLTTRITIAGGLMLVAVICA-VLIMFLFIFHWYKTRSDDVESSHVRRVQPEIARRWAAEE 87
           H ++   + G +ML +VI   V ++ +  FH Y        +  +RR      R  +A  
Sbjct: 17  HTSSGYALNGKIMLSSVIVLFVAVIMILCFHSYARWLFRRHNRRIRRRIRSHLRTLSASP 76

Query: 88  GGSGTATAAFGEI-----------KTGEVGDCSICTEVFGEEEICRVIENCGHFFHTDCL 147
                  A   +I              E  +CS+C   F EE+  R++  CGH FH DC+
Sbjct: 77  RDQALDQAVLDKIPIFVYSSKNPPPPEEKEECSVCLSEFEEEDEGRLLPKCGHSFHVDCI 136

Query: 148 DRWFRIERCCPLCRCVCSSDF 157
           D WFR    CPLCR      F
Sbjct: 137 DTWFRSRSTCPLCRAPVQPPF 157

[Close]

BLAST of Sed0019672 vs. ExPASy Swiss-Prot
Match: Q84W40 (RING-H2 finger protein ATL11 OS=Arabidopsis thaliana OX=3702 GN=ATL11 PE=2 SV=2)

HSP 1 Score: 57.4 bits (137), Expect = 1.9e-07
Identity = 24/61 (39.34%), Postives = 33/61 (54.10%), Query Frame = 0


Query: 93  TAAFGEIKTGEVG----DCSICTEVFGEEEICRVIENCGHFFHTDCLDRWFRIERCCPLC 150
           T  +  +KT  +G    +CS+C   F ++E  R+I  C H FH  C+D W R    CPLC
Sbjct: 126 TFQYSTVKTLRIGKEALECSVCLNEFEDDETLRLIPKCCHVFHPGCIDAWLRSHTTCPLC 185

[Close]

BLAST of Sed0019672 vs. ExPASy TrEMBL
Match: A0A6J1DVK4 (RING-H2 finger protein ATL14-like OS=Momordica charantia OX=3673 GN=LOC111024788 PE=4 SV=1)

HSP 1 Score: 133.7 bits (335), Expect = 7.8e-28
Identity = 70/136 (51.47%), Postives = 85/136 (62.50%), Query Frame = 0


Query: 17  PPDT--AVDRNSFHLTTRITIAGGLMLVAVICAVLIMFLFIFHWYKTRSDDVESSHVRRV 76
           PP T  A+ RN+FHLT R+ +A G M VAV+CA  I  +F+FH+YKTR  D ES    R 
Sbjct: 8   PPQTTAAIHRNTFHLTRRLWVASGFMFVAVVCAFSISLMFVFHYYKTRVHDTES----RS 67

Query: 77  QPEIARRWAAEEGGSGTATAAFGEIKTGEVGDCSICTEVFGEEEICRVIENCGHFFHTDC 136
           QP+ A +  A       +  A+ E      G C+IC E F EEE C VIENCGHFFH DC
Sbjct: 68  QPQTAEQIPA-------SAVAYREEIRDCGGRCAICIEGFAEEEKCGVIENCGHFFHKDC 127

Query: 137 LDRWFRIERCCPLCRC 151
           +DRW +IE  CPLCRC
Sbjct: 128 IDRWLKIESRCPLCRC 132

[Close]

BLAST of Sed0019672 vs. ExPASy TrEMBL
Match: A0A5A7VMH1 (RING-H2 finger protein ATL52-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold352G00560 PE=4 SV=1)

HSP 1 Score: 94.0 bits (232), Expect = 6.8e-16
Identity = 57/141 (40.43%), Postives = 77/141 (54.61%), Query Frame = 0


Query: 38  GLMLVAVICAVLIMFLFIFHWYK-----TRSDDVESS-HVRR-------VQPEIARR--- 97
           G + V+V+C +LI+FLF  + Y+     TR+ D+E   H  R        Q EI R+   
Sbjct: 2   GFLFVSVVCIILIIFLFHIYHYRLRLNQTRTLDIEQRLHEHRTMQLLAQTQAEIIRQRQT 61

Query: 98  -------WAAEEGGSGTATAAFGEIKTGEVGD----CSICTEVFGEEEICRVIENCGHFF 152
                     EE  S   T A+ ++K  E G     C+IC E F +EEIC V+E+CGH F
Sbjct: 62  TTQSNDTTEGEETSSAVMTVAY-KVKDNEAGGSYCCCAICIEEFEDEEICGVVESCGHCF 121

[Close]

BLAST of Sed0019672 vs. ExPASy TrEMBL
Match: A0A5D3BE50 (RING-type E3 ubiquitin transferase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold194G002270 PE=3 SV=1)

HSP 1 Score: 91.7 bits (226), Expect = 3.4e-15
Identity = 56/141 (39.72%), Postives = 76/141 (53.90%), Query Frame = 0


Query: 38  GLMLVAVICAVLIMFLFIFHWYK-----TRSDDVESS-HVRR-------VQPEIARR--- 97
           G + V+V+C +LI+FLF  + Y+     TR+ D+E   H  R        Q EI R+   
Sbjct: 2   GFLFVSVVCIILIIFLFHIYHYRLRLNQTRTLDIEQRLHEHRTMQLLAQTQAEIIRQRQT 61

Query: 98  -------WAAEEGGSGTATAAFGEIKTGEVGD----CSICTEVFGEEEICRVIENCGHFF 152
                     EE  S     A+ ++K  E G     C+IC E F +EEIC V+E+CGH F
Sbjct: 62  TTQSNDTTEGEETSSAVMKVAY-KVKDNEAGGSYCCCAICIEEFEDEEICGVVESCGHCF 121

[Close]

BLAST of Sed0019672 vs. ExPASy TrEMBL
Match: A0A6J1DYV0 (E3 ubiquitin-protein ligase RING1-like OS=Momordica charantia OX=3673 GN=LOC111024783 PE=4 SV=1)

HSP 1 Score: 89.0 bits (219), Expect = 2.2e-14
Identity = 62/170 (36.47%), Postives = 78/170 (45.88%), Query Frame = 0


Query: 1   MSSFPIPLPESSTLQNPPDTAVDRNSFHLTTRITIAGGLMLVAVICAVLIMFLFIFHWYK 60
           MS  P P P  S   + P T V  +      +I    G   V  IC  LI+  FI + Y 
Sbjct: 1   MSFPPTPPPSFSVQYSLPVTVVITHRSTFDPKI----GFGFVGFICFSLIVLFFILYSYH 60

Query: 61  TR--------SDDVES------------SHVRRVQPEIARRWAAEEGGSGTATAAFGEIK 120
            R         DD+ES            S   R QP    +   E   +  A     EI 
Sbjct: 61  RRIMLSQTRVYDDIESRVQVSRVFTIVLSERARQQPSPPPQTVEEASATAVAIIEAEEII 120

Query: 121 TGEVGDCSICTEVFGEEEICRVIENCGHFFHTDCLDRWFRIERCCPLCRC 151
             +  DC+IC E F E+++CRVIE CGHFFH DC+D+W  +ER CPLCRC
Sbjct: 121 DSD-RDCAICFEGFEEKQVCRVIEKCGHFFHKDCVDQWLTMERGCPLCRC 165

[Close]

BLAST of Sed0019672 vs. ExPASy TrEMBL
Match: A0A6J1HJU0 (RING-type E3 ubiquitin transferase OS=Cucurbita moschata OX=3662 GN=LOC111464742 PE=3 SV=1)

HSP 1 Score: 82.0 bits (201), Expect = 2.7e-12
Identity = 51/142 (35.92%), Postives = 73/142 (51.41%), Query Frame = 0


Query: 38  GLMLVAVICAVLIMFLFIFH-------WYKTRSDDVE-SSHVRRV--------------- 97
           GL++++ I  ++ + +F+F         Y+TR+ DVE ++H  R+               
Sbjct: 7   GLIVLSAIAIIVFLPIFMFRCYHNHLMQYQTRALDVEQTNHATRLFARFRAEFMQQQQSI 66

Query: 98  -QPEIARRWAAEEGGSGTATAAFGEIKTGEVGD----CSICTEVFGEEEICRVIENCGHF 152
             P      A EE  S     A+ +IKT E  D    C+IC E F EEEIC V++ CGH 
Sbjct: 67  AAPPPRSNTAEEEAASIVTKVAYRDIKTTEEADVDDYCAICIEGFEEEEICGVLDRCGHC 126

[Close]

BLAST of Sed0019672 vs. TAIR 10
Match: AT3G62690.1 (AtL5 )

HSP 1 Score: 65.5 bits (158), Expect = 5.0e-11
Identity = 43/142 (30.28%), Postives = 68/142 (47.89%), Query Frame = 0


Query: 25  NSFHLTTRITIAGGLMLVAVICA-VLIMFLFIFHWYKTRSDDVESSHVRRVQPEIARRWA 84
           N  H ++R ++ G +ML +VI   V ++ +  FH Y       ++  +RR      R  A
Sbjct: 14  NMNHGSSRYSLNGKIMLASVIILFVAVILILCFHSYARWLFRRQNRRIRRRISAHLRSLA 73

Query: 85  AEEGGSGTATAA--------------FGEIKTGE--VGDCSICTEVFGEEEICRVIENCG 144
           A    + ++++                  +KT E  + +CS+C   F E++  RV+  CG
Sbjct: 74  AARDPTQSSSSLSPLDPTVLEKIPIFVYSVKTHESPLEECSVCLSEFEEDDEGRVLPKCG 133

Query: 145 HFFHTDCLDRWFRIERCCPLCR 150
           H FH DC+D WFR    CPLCR
Sbjct: 134 HVFHVDCIDTWFRSRSSCPLCR 155

[Close]

BLAST of Sed0019672 vs. TAIR 10
Match: AT3G16720.1 (TOXICOS EN LEVADURA 2 )

HSP 1 Score: 62.0 bits (149), Expect = 5.5e-10
Identity = 46/170 (27.06%), Postives = 73/170 (42.94%), Query Frame = 0


Query: 11  SSTLQNPPDTAVDRNSFHLTTRITIAGGLMLVAVICAVLIMFLFIF-----HWYKTRSDD 70
           +S  Q+P     + N+F  +    ++G +ML A++    ++ L +F      WY  R+  
Sbjct: 2   NSNDQDPIPFRPEDNNFSGSKTYAMSGKIMLSAIVILFFVVILMVFLHLYARWYLLRA-- 61

Query: 71  VESSHVRRVQPEIARR-----WAAEEGGSGTATAA----------------FGEIKTGEV 130
               H+RR      RR     + A+   + T+  A                F +    + 
Sbjct: 62  -RRRHLRRRSRN--RRATMVFFTADPSTAATSVVASRGLDPNVIKSLPVFTFSDETHKDP 121

Query: 131 GDCSICTEVFGEEEICRVIENCGHFFHTDCLDRWFRIERCCPLCRCVCSS 155
            +C++C   F E E  RV+ NC H FH DC+D WF     CPLCR +  S
Sbjct: 122 IECAVCLSEFEESETGRVLPNCQHTFHVDCIDMWFHSHSTCPLCRSLVES 166

[Close]

BLAST of Sed0019672 vs. TAIR 10
Match: AT2G47560.1 (RING/U-box superfamily protein )

HSP 1 Score: 60.8 bits (146), Expect = 1.2e-09
Identity = 41/141 (29.08%), Postives = 59/141 (41.84%), Query Frame = 0


Query: 28  HLTTRITIAGGLMLVAVICA-VLIMFLFIFHWYKTRSDDVESSHVRRVQPEIARRWAAEE 87
           H ++   + G +ML +VI   V ++ +  FH Y        +  +RR      R  +A  
Sbjct: 17  HTSSGYALNGKIMLSSVIVLFVAVIMILCFHSYARWLFRRHNRRIRRRIRSHLRTLSASP 76

Query: 88  GGSGTATAAFGEI-----------KTGEVGDCSICTEVFGEEEICRVIENCGHFFHTDCL 147
                  A   +I              E  +CS+C   F EE+  R++  CGH FH DC+
Sbjct: 77  RDQALDQAVLDKIPIFVYSSKNPPPPEEKEECSVCLSEFEEEDEGRLLPKCGHSFHVDCI 136

Query: 148 DRWFRIERCCPLCRCVCSSDF 157
           D WFR    CPLCR      F
Sbjct: 137 DTWFRSRSTCPLCRAPVQPPF 157

[Close]

BLAST of Sed0019672 vs. TAIR 10
Match: AT5G43420.1 (RING/U-box superfamily protein )

HSP 1 Score: 60.8 bits (146), Expect = 1.2e-09
Identity = 24/50 (48.00%), Postives = 30/50 (60.00%), Query Frame = 0


Query: 106 DCSICTEVFGEEEICRVIENCGHFFHTDCLDRWFRIERCCPLCRCVCSSD 156
           +CS+C   F +EE  R+I NC H FH DC+D W +    CPLCR   S D
Sbjct: 137 ECSVCLSEFQDEEKLRIIPNCSHLFHIDCIDVWLQNNANCPLCRTRVSCD 186

[Close]

BLAST of Sed0019672 vs. TAIR 10
Match: AT1G72200.1 (RING/U-box superfamily protein )

HSP 1 Score: 57.4 bits (137), Expect = 1.4e-08
Identity = 24/61 (39.34%), Postives = 33/61 (54.10%), Query Frame = 0


Query: 93  TAAFGEIKTGEVG----DCSICTEVFGEEEICRVIENCGHFFHTDCLDRWFRIERCCPLC 150
           T  +  +KT  +G    +CS+C   F ++E  R+I  C H FH  C+D W R    CPLC
Sbjct: 126 TFQYSTVKTLRIGKEALECSVCLNEFEDDETLRLIPKCCHVFHPGCIDAWLRSHTTCPLC 185

The following BLAST results are available for this feature:

BLAST of Sed0019672 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_031742489.1	2.3e-34	54.09	RING-H2 finger protein ATL1-like [Cucumis sativus] >KAE8653253.1 hypothetical pr...	[more]
XP_022158253.1	1.6e-27	51.47	RING-H2 finger protein ATL14-like [Momordica charantia]	[more]
KAA0067736.1	1.4e-15	40.43	RING-H2 finger protein ATL52-like [Cucumis melo var. makuwa]	[more]
TYJ97407.1	7.0e-15	39.72	RING-H2 finger protein ATL52-like [Cucumis melo var. makuwa]	[more]
XP_022158249.1	4.5e-14	36.47	E3 ubiquitin-protein ligase RING1-like [Momordica charantia]	[more]

BLAST of Sed0019672 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9LZJ6	7.0e-10	30.28	RING-H2 finger protein ATL5 OS=Arabidopsis thaliana OX=3702 GN=ATL5 PE=2 SV=1	[more]
Q8L9T5	7.8e-09	27.06	RING-H2 finger protein ATL2 OS=Arabidopsis thaliana OX=3702 GN=ATL2 PE=2 SV=2	[more]
Q9LSW9	1.7e-08	48.00	RING-H2 finger protein ATL16 OS=Arabidopsis thaliana OX=3702 GN=ATL16 PE=2 SV=1	[more]
O22255	1.7e-08	29.08	RING-H2 finger protein ATL64 OS=Arabidopsis thaliana OX=3702 GN=ATL64 PE=2 SV=1	[more]
Q84W40	1.9e-07	39.34	RING-H2 finger protein ATL11 OS=Arabidopsis thaliana OX=3702 GN=ATL11 PE=2 SV=2	[more]

BLAST of Sed0019672 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1DVK4	7.8e-28	51.47	RING-H2 finger protein ATL14-like OS=Momordica charantia OX=3673 GN=LOC111024788...	[more]
A0A5A7VMH1	6.8e-16	40.43	RING-H2 finger protein ATL52-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C2...	[more]
A0A5D3BE50	3.4e-15	39.72	RING-type E3 ubiquitin transferase OS=Cucumis melo var. makuwa OX=1194695 GN=E56...	[more]
A0A6J1DYV0	2.2e-14	36.47	E3 ubiquitin-protein ligase RING1-like OS=Momordica charantia OX=3673 GN=LOC1110...	[more]
A0A6J1HJU0	2.7e-12	35.92	RING-type E3 ubiquitin transferase OS=Cucurbita moschata OX=3662 GN=LOC111464742...	[more]

BLAST of Sed0019672 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G62690.1	5.0e-11	30.28	AtL5	[more]
AT3G16720.1	5.5e-10	27.06	TOXICOS EN LEVADURA 2	[more]
AT2G47560.1	1.2e-09	29.08	RING/U-box superfamily protein	[more]
AT5G43420.1	1.2e-09	48.00	RING/U-box superfamily protein	[more]
AT1G72200.1	1.4e-08	39.34	RING/U-box superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001841	Zinc finger, RING-type	SMART	SM00184	ring_2	coord: 107..148 e-value: 6.0E-5 score: 32.4
IPR001841	Zinc finger, RING-type	PFAM	PF13639	zf-RING_2	coord: 106..149 e-value: 1.0E-11 score: 45.0
IPR001841	Zinc finger, RING-type	PROSITE	PS50089	ZF_RING_2	coord: 107..149 score: 12.784338
IPR013083	Zinc finger, RING/FYVE/PHD-type	GENE3D	3.30.40.10	Zinc/RING finger domain, C3HC4 (zinc finger)	coord: 64..155 e-value: 1.4E-14 score: 55.5
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..20
None	No IPR available	PANTHER	PTHR14155	RING FINGER DOMAIN-CONTAINING	coord: 14..150
None	No IPR available	CDD	cd16448	RING-H2	coord: 107..149 e-value: 2.77511E-10 score: 51.2987
None	No IPR available	SUPERFAMILY	57850	RING/U-box	coord: 106..157

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0019672.1	Sed0019672.1	mRNA