Sed0019671 (gene) Chayote v1

Overview


Name	Sed0019671
Type	gene
Organism	Sechium edule (Chayote v1)
Description	GH16248
Location	LG08: 36686508 .. 36687125 (-)
RNA-Seq Expression	Sed0019671
Synteny	Sed0019671

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTAAACACATCCGTCTTCATCGTGCTTCTCGGACGCATCAAGGAATATATACATCCAATAATAGTCTGCCTTGGTTATCAGTACTTCATGGTCGCTGTTGCAGTCCTTTTTGCTGTACACCTAGGTCATTTGATTATTTTCTTCATTATTATATGATTACTATTGTATACTTTATGTTTTGACACACTTTGTTTTTTAGACAATGTTTTGACACAATTATGTTTTTCTTTTTTTGAAGGATGTTACTGTTTCCACAACTGGAATACCCTATGGACCAAATTTAAAGAGTTTATGTCCAAGGTTTGGAATGAGATCGTGACTGACCAAGACATTCCTACTGCAGCTGGTGGGGCTAGAGGACCTGATGGGCCTAGAGGTCCTAGAGGACCTGGTGGGGCTAGAGGTCCTAGAGGACCTGATTGCCTCCAAGATCCTAGAGGATCTGCTGAGCCCCAAGGTCCTAGAGGACGTGCCGCACCAACTCTTCATCAGCCTCCTGAGCCTGCTGTCCACGGTGGACATGTTCTTGAGCCTGCTGGCCATGGTGGAAATGTTGACCAGTCTCCTGAGCCTCCTCAGCCTGCTGGCCACGGTGGACATGTTTTACCTACTTGA

mRNA sequence

ATGGTAAACACATCCGTCTTCATCGTGCTTCTCGGACGCATCAAGGAATATATACATCCAATAATAGTCTGCCTTGGTTATCAGTACTTCATGGTCGCTGTTGCAGTCCTTTTTGCTGTACACCTAGGATGTTACTGTTTCCACAACTGGAATACCCTATGGACCAAATTTAAAGAGTTTATGTCCAAGGTTTGGAATGAGATCGTGACTGACCAAGACATTCCTACTGCAGCTGGTGGGGCTAGAGGACCTGATGGGCCTAGAGGTCCTAGAGGACCTGGTGGGGCTAGAGGTCCTAGAGGACCTGATTGCCTCCAAGATCCTAGAGGATCTGCTGAGCCCCAAGGTCCTAGAGGACGTGCCGCACCAACTCTTCATCAGCCTCCTGAGCCTGCTGTCCACGGTGGACATGTTCTTGAGCCTGCTGGCCATGGTGGAAATGTTGACCAGTCTCCTGAGCCTCCTCAGCCTGCTGGCCACGGTGGACATGTTTTACCTACTTGA

Coding sequence (CDS)

ATGGTAAACACATCCGTCTTCATCGTGCTTCTCGGACGCATCAAGGAATATATACATCCAATAATAGTCTGCCTTGGTTATCAGTACTTCATGGTCGCTGTTGCAGTCCTTTTTGCTGTACACCTAGGATGTTACTGTTTCCACAACTGGAATACCCTATGGACCAAATTTAAAGAGTTTATGTCCAAGGTTTGGAATGAGATCGTGACTGACCAAGACATTCCTACTGCAGCTGGTGGGGCTAGAGGACCTGATGGGCCTAGAGGTCCTAGAGGACCTGGTGGGGCTAGAGGTCCTAGAGGACCTGATTGCCTCCAAGATCCTAGAGGATCTGCTGAGCCCCAAGGTCCTAGAGGACGTGCCGCACCAACTCTTCATCAGCCTCCTGAGCCTGCTGTCCACGGTGGACATGTTCTTGAGCCTGCTGGCCATGGTGGAAATGTTGACCAGTCTCCTGAGCCTCCTCAGCCTGCTGGCCACGGTGGACATGTTTTACCTACTTGA

Protein sequence

MVNTSVFIVLLGRIKEYIHPIIVCLGYQYFMVAVAVLFAVHLGCYCFHNWNTLWTKFKEFMSKVWNEIVTDQDIPTAAGGARGPDGPRGPRGPGGARGPRGPDCLQDPRGSAEPQGPRGRAAPTLHQPPEPAVHGGHVLEPAGHGGNVDQSPEPPQPAGHGGHVLPT

Homology

[Close]

BLAST of Sed0019671 vs. NCBI nr
Match: XP_028891790.1 (uncharacterized protein CJI97_001146 [[Candida] auris] >PIS55908.1 hypothetical protein CJI97_001146 [[Candida] auris])

HSP 1 Score: 55.8 bits (133), Expect = 4.0e-04
Identity = 38/93 (40.86%), Postives = 50/93 (53.76%), Query Frame = 0


Query: 75  PTAAGGARGPDGPRGPRGPGGAR---GPRGPDCLQDPRGSAEPQGPRGRAAPTLHQPPE- 134
           P+   G  GP+GP+GP+GPGG     GP GP     P G + P GP+G + P+    P  
Sbjct: 599 PSGPSGPSGPEGPQGPQGPGGPSENGGPSGPSGPSGPSGPSGPSGPKGPSGPSGPSGPSG 658

Query: 135 PAVHGGHVLEPAGHGGNVDQSPEPPQPAGHGGH 164
           P  +GG+V +P G+GG       P  P G GGH
Sbjct: 659 PGENGGNVEQPEGNGGQGGPG-GPSGPGGPGGH 690

[Close]

BLAST of Sed0019671 vs. NCBI nr
Match: EDV96444.1 (GH16248 [Drosophila grimshawi])

HSP 1 Score: 55.1 bits (131), Expect = 6.9e-04
Identity = 41/93 (44.09%), Postives = 43/93 (46.24%), Query Frame = 0


Query: 75  PTAAGGARGPDGPRGPRGPGGARGPRGPDCLQDPRGSAEPQGPRGRAAPTLHQPPEPAVH 134
           P   GG +GP GPRGP GP G  GP GP     P G   P GP  +  P    PP P  H
Sbjct: 439 PNGPGGPKGPGGPRGPGGPKGPFGPPGPPGPPGPPGPNGPTGPGPKGPPGPPGPPGPHAH 498

Query: 135 GGHV-LEPAGHGGNVDQSPEPPQPAGHGGHVLP 167
           GGH  L P G  G     P PP P G  G   P
Sbjct: 499 GGHAELGPLGPPG--PTRPGPPGPPGPPGPTRP 529

[Close]

BLAST of Sed0019671 vs. NCBI nr
Match: XP_032599065.1 (collagen alpha-2(XI) chain [Drosophila grimshawi])

HSP 1 Score: 55.1 bits (131), Expect = 6.9e-04
Identity = 41/93 (44.09%), Postives = 43/93 (46.24%), Query Frame = 0


Query: 75  PTAAGGARGPDGPRGPRGPGGARGPRGPDCLQDPRGSAEPQGPRGRAAPTLHQPPEPAVH 134
           P   GG +GP GPRGP GP G  GP GP     P G   P GP  +  P    PP P  H
Sbjct: 432 PNGPGGPKGPGGPRGPGGPKGPFGPPGPPGPPGPPGPNGPTGPGPKGPPGPPGPPGPHAH 491

Query: 135 GGHV-LEPAGHGGNVDQSPEPPQPAGHGGHVLP 167
           GGH  L P G  G     P PP P G  G   P
Sbjct: 492 GGHAELGPLGPPG--PTRPGPPGPPGPPGPTRP 522

[Close]

BLAST of Sed0019671 vs. ExPASy TrEMBL
Match: B4IXS3 (GH16248 OS=Drosophila grimshawi OX=7222 GN=Dgri\GH16248 PE=4 SV=1)

HSP 1 Score: 55.1 bits (131), Expect = 3.3e-04
Identity = 41/93 (44.09%), Postives = 43/93 (46.24%), Query Frame = 0


Query: 75  PTAAGGARGPDGPRGPRGPGGARGPRGPDCLQDPRGSAEPQGPRGRAAPTLHQPPEPAVH 134
           P   GG +GP GPRGP GP G  GP GP     P G   P GP  +  P    PP P  H
Sbjct: 439 PNGPGGPKGPGGPRGPGGPKGPFGPPGPPGPPGPPGPNGPTGPGPKGPPGPPGPPGPHAH 498

Query: 135 GGHV-LEPAGHGGNVDQSPEPPQPAGHGGHVLP 167
           GGH  L P G  G     P PP P G  G   P
Sbjct: 499 GGHAELGPLGPPG--PTRPGPPGPPGPPGPTRP 529

The following BLAST results are available for this feature:

BLAST of Sed0019671 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_028891790.1	4.0e-04	40.86	uncharacterized protein CJI97_001146 [[Candida] auris] >PIS55908.1 hypothetical ...	[more]
EDV96444.1	6.9e-04	44.09	GH16248 [Drosophila grimshawi]	[more]
XP_032599065.1	6.9e-04	44.09	collagen alpha-2(XI) chain [Drosophila grimshawi]	[more]

BLAST of Sed0019671 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Sed0019671 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
B4IXS3	3.3e-04	44.09	GH16248 OS=Drosophila grimshawi OX=7222 GN=Dgri\GH16248 PE=4 SV=1	[more]

BLAST of Sed0019671 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 72..167

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0019671.1	Sed0019671.1	mRNA