Sed0019629 (gene) Chayote v1

Overview


Name	Sed0019629
Type	gene
Organism	Sechium edule (Chayote v1)
Description	nuclear transport factor 2
Location	LG08: 6213285 .. 6215246 (+)
RNA-Seq Expression	Sed0019629
Synteny	Sed0019629

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAAGAAGATCAGGCTGATATTGTAGGGAAGGCGTTTGTGGAACATTACTACCAATTGTTCGACAACGAAAGAGCCTCTGTTTCTTCTTTGTACCAACCCGACTCCATGTTCACTTTGGAAGGCCAGCAAATATTAGGCGGTGATGACATCTCAACTAAGTTTTAGCAATTGCCCTTTGAACGTTGCCGACATGTCGTCAGCACCGTTGATGTGCAACCCTCCGTCACCCCTGCCTCCCTCCTCATCTTCGTCAGCGGTAGCCTTGAGCTACCCGACAAAGAACACCCCTTGAGATTCAGTCAGGTTATCTTTCTTTCTTTTTTAGTTTCCAACCTGTATTCTTTTGTTCAATAAATTTGAATTTATATATATATATATATATATATATATATATATATATATATATATACCGTCCATGCTATATTTCTTTTGACGAGTGAAGTTCCTTATTATGTTCAATGTATAAAGATAAAAAATTGGGTACTTCATCCAAAGTACATAATACATACTATCATTTATGAGGATAATAGTACACGAGCATGTTTTTAATATATCATTTATTTTTTATTACTCAAATAATTTTTTTTAATATAATTTGTAATTCATTTTTATATACTTATGTTATTCTGTGAGATGTTATTATCCTCACAAATGGTAATAAGTATGTCCAAATACTTTTTAAAAATATATCCAAATTTTGTTTATATATGAATAATATTTTTTTGTTTACATTAATATATAGATTTTCTTTTTTGTTTTTAAATTTTTTTTCTTGTGGTCTAAAAAGAATTGCATTTAAAGGGGTGTTTCCTCGGCTTCGATCAACTAAAATTGATAGATATCAAATTTGAAATTGATAAAGTTCAAATTAAATTTGAAATATTTTATTATGTACAAATATTTTAAGAAATTAATTTCAAAATATAAATGTTAGAATTTTCTATGTGCAATAATCTTTTAAAAAATATTTGTGATCCATTAAAAATGTTGAAAAAAATAGTTTTATTATTAATATTTATCGTGCTCAAATCAGCCGGAAATAACAAAATATCCCACATTCAATAAGTAATAATTATATAAAAAAATGCCCTTATGGGTAACAGACCAAAATATCCTTATATAATGAGTTTTAAAAAACGCAAAAAGTAACTTTAAATAAATATCACTTCAAATTAGTCTCAAACATAGGGCTTCAAAATTGTTGGGGTCAATACCACAAGAGAAAATGAATTTTGAACAAAAATAAAATTTATTTTTGAAATGAGAGAAAAGAAAAGACATGAAAAAATTGGTTTTTTTTAAAAGTCTTACCCCGACGTTTTTTACGTTGGCTTAAACTATCTTTTCCGATGTTTAACGCCTACTCATTAATTGATGATTGTAATAAAGTGTCATAATACGCGCATTAATTGATGATTGTAATAAAGTGTCATATAATGCGAGTTAATCGATGATTATAATAAAGTGTCATAAAACGCGTGTTTTCATTTATAACACTTTAATTGCATTTCCTTCATAAATTTGGTTTGGGATAAGTATCATCTATTCCCATTTTTCTAGTAGTGATTTAACAAGTTTCGTTACCCGAACCAACACGCTCTTCACTAGCATGTCGAACGAAGTCCTCCGGAAACATGTGTGTACCATGGCACGCACAGACAATCTTGATCTGGCTTGCATTGAATCTGTAATTCACACCAAAAATTGTTCTACACCAGAAATTGTCATGAATGGGTAAGAGTGTATCTTGAATAAAGAAGAGGGGGGAAATATAAAATTATGTAATGGGAAATTGTTGTATTGATTGAAGGTGAGAAATTGTTGAAAGATAGTCCATTGTTGTTGAGATCTCAATTGTCCCACATTGGAAAAGTGGGGAGTCCAACATTAATATAAAAGACATATGAGTTATTCCCCACATTGCCAATTGGTTTTGAGGTGGAACCCCATATTCTCTAA

mRNA sequence

ATGGAAGAAGATCAGGCTGATATTGTAGGGAAGGCGTTTGTGGAACATTACTACCAATTGTTCGACAACGAAAGAGCCTCTGTTTCTTCTTTGTACCAACCCGACTCCATGTTCACTTTGGAAGGCCAGCAAATATTAGGCGGTGATGACATCTCAACTAAGTTTTACACCGTTGATGTGCAACCCTCCGTCACCCCTGCCTCCCTCCTCATCTTCGTCAGCGGTAGCCTTGAGCTACCCGACAAAGAACACCCCTTGAGATTCAGTCAGACATATGAGTTATTCCCCACATTGCCAATTGGTTTTGAGGTGGAACCCCATATTCTCTAA

Coding sequence (CDS)

ATGGAAGAAGATCAGGCTGATATTGTAGGGAAGGCGTTTGTGGAACATTACTACCAATTGTTCGACAACGAAAGAGCCTCTGTTTCTTCTTTGTACCAACCCGACTCCATGTTCACTTTGGAAGGCCAGCAAATATTAGGCGGTGATGACATCTCAACTAAGTTTTACACCGTTGATGTGCAACCCTCCGTCACCCCTGCCTCCCTCCTCATCTTCGTCAGCGGTAGCCTTGAGCTACCCGACAAAGAACACCCCTTGAGATTCAGTCAGACATATGAGTTATTCCCCACATTGCCAATTGGTTTTGAGGTGGAACCCCATATTCTCTAA

Protein sequence

MEEDQADIVGKAFVEHYYQLFDNERASVSSLYQPDSMFTLEGQQILGGDDISTKFYTVDVQPSVTPASLLIFVSGSLELPDKEHPLRFSQTYELFPTLPIGFEVEPHIL

Homology

[Close]

BLAST of Sed0019629 vs. NCBI nr
Match: XP_008441397.1 (PREDICTED: nuclear transport factor 2 [Cucumis melo])

HSP 1 Score: 142.5 bits (358), Expect = 2.1e-30
Identity = 70/109 (64.22%), Postives = 83/109 (76.15%), Query Frame = 0


Query: 1   MEEDQADIVGKAFVEHYYQLFDNERASVSSLYQPDSMFTLEGQQILGGDDISTKFY---- 60
           MEE+Q DI+GKAFVEHYY LFDNERAS+SSLYQPDSM T EGQQILG +DISTK      
Sbjct: 1   MEEEQGDIIGKAFVEHYYHLFDNERASLSSLYQPDSMLTFEGQQILGVNDISTKLQQLPF 60

Query: 61  --------TVDVQPSVTPASLLIFVSGSLELPDKEHPLRFSQTYELFPT 98
                   T+D QPS  P S+LIFVSGS+E+P++EHPLR+SQ + L P+
Sbjct: 61  ERCRHVVSTIDTQPSSVPGSILIFVSGSIEIPEEEHPLRYSQMFHLVPS 109

[Close]

BLAST of Sed0019629 vs. NCBI nr
Match: XP_022933198.1 (nuclear transport factor 2B [Cucurbita moschata] >KAG7019672.1 Nuclear transport factor 2 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 141.0 bits (354), Expect = 6.2e-30
Identity = 72/107 (67.29%), Postives = 81/107 (75.70%), Query Frame = 0


Query: 3   EDQADIVGKAFVEHYYQLFDNERASVSSLYQPDSMFTLEGQQILGGDDISTKFY------ 62
           E++ADIVGKAFVEHYYQLFDNER S+S+LYQPDSM T EGQQILG DDIS++        
Sbjct: 2   EEEADIVGKAFVEHYYQLFDNERPSLSTLYQPDSMLTFEGQQILGVDDISSRLQQLPFER 61

Query: 63  ------TVDVQPSVTPASLLIFVSGSLELPDKEHPLRFSQTYELFPT 98
                 TVD QPS  P S+LIFVSGSLELPD+EH LRFSQ + L PT
Sbjct: 62  CRHVVSTVDTQPSAVPGSILIFVSGSLELPDEEHHLRFSQMFHLVPT 108

[Close]

BLAST of Sed0019629 vs. NCBI nr
Match: KAG6584071.1 (Nuclear transport factor 2B, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 141.0 bits (354), Expect = 6.2e-30
Identity = 72/107 (67.29%), Postives = 81/107 (75.70%), Query Frame = 0


Query: 3   EDQADIVGKAFVEHYYQLFDNERASVSSLYQPDSMFTLEGQQILGGDDISTKFY------ 62
           E++ADIVGKAFVEHYYQLFDNER S+S+LYQPDSM T EGQQILG DDIS++        
Sbjct: 2   EEEADIVGKAFVEHYYQLFDNERPSLSTLYQPDSMLTFEGQQILGVDDISSRLQQLPFER 61

Query: 63  ------TVDVQPSVTPASLLIFVSGSLELPDKEHPLRFSQTYELFPT 98
                 TVD QPS  P S+LIFVSGSLELPD+EH LRFSQ + L PT
Sbjct: 62  CRHVVSTVDTQPSAVPGSILIFVSGSLELPDEEHHLRFSQMFHLVPT 108

[Close]

BLAST of Sed0019629 vs. NCBI nr
Match: KAA0056878.1 (nuclear transport factor 2 [Cucumis melo var. makuwa] >TYJ99381.1 nuclear transport factor 2 [Cucumis melo var. makuwa])

HSP 1 Score: 140.2 bits (352), Expect = 1.1e-29
Identity = 69/104 (66.35%), Postives = 80/104 (76.92%), Query Frame = 0


Query: 1   MEEDQADIVGKAFVEHYYQLFDNERASVSSLYQPDSMFTLEGQQILGGDDISTKFY---- 60
           MEE+Q DI+GKAFVEHYY LFDNERAS+SSLYQPDSM T EGQQILG +DISTK      
Sbjct: 1   MEEEQGDIIGKAFVEHYYHLFDNERASLSSLYQPDSMLTFEGQQILGVNDISTKLQQLPF 60

Query: 61  --------TVDVQPSVTPASLLIFVSGSLELPDKEHPLRFSQTY 93
                   T+D QPS  P S+LIFVSGS+E+P++EHPLR+SQ Y
Sbjct: 61  ERCRHVVSTIDTQPSSVPGSILIFVSGSIEIPEEEHPLRYSQVY 104

[Close]

BLAST of Sed0019629 vs. NCBI nr
Match: XP_023519037.1 (nuclear transport factor 2B [Cucurbita pepo subsp. pepo])

HSP 1 Score: 137.9 bits (346), Expect = 5.3e-29
Identity = 70/107 (65.42%), Postives = 80/107 (74.77%), Query Frame = 0


Query: 3   EDQADIVGKAFVEHYYQLFDNERASVSSLYQPDSMFTLEGQQILGGDDISTKFY------ 62
           E++ DIVGKAFVEHYYQLFDNER S+S+LYQPDSM T EGQQILG DDIS++        
Sbjct: 2   EEETDIVGKAFVEHYYQLFDNERPSLSTLYQPDSMLTFEGQQILGVDDISSRLQQLPFER 61

Query: 63  ------TVDVQPSVTPASLLIFVSGSLELPDKEHPLRFSQTYELFPT 98
                 TVD QPS  P S+LIFVSGSLELP++EH LRFSQ + L PT
Sbjct: 62  CRHVVSTVDTQPSAVPGSILIFVSGSLELPEEEHHLRFSQMFHLVPT 108

[Close]

BLAST of Sed0019629 vs. ExPASy Swiss-Prot
Match: Q9XJ54 (Nuclear transport factor 2 OS=Oryza sativa subsp. japonica OX=39947 GN=NTF2 PE=2 SV=1)

HSP 1 Score: 93.6 bits (231), Expect = 1.5e-18
Identity = 51/103 (49.51%), Postives = 60/103 (58.25%), Query Frame = 0


Query: 6   ADIVGKAFVEHYYQLFDNERASVSSLYQPDSMFTLEGQQILGGDDISTK----------- 65
           AD V KAFVEHYY+ FD  R ++ SLYQ  SM T EGQQ LG   I+ K           
Sbjct: 3   ADAVAKAFVEHYYRTFDTNRPALVSLYQDGSMLTFEGQQFLGAAAIAGKLGSLPFAQCHH 62

Query: 66  -FYTVDVQPSVTPASLLIFVSGSLELPDKEHPLRFSQTYELFP 97
              TVD QPS     +L+FVSGSL     EHPL+FSQ ++L P
Sbjct: 63  DINTVDCQPSGPQGGMLVFVSGSLRTGPDEHPLKFSQMFQLLP 105

[Close]

BLAST of Sed0019629 vs. ExPASy Swiss-Prot
Match: Q9C7F5 (Nuclear transport factor 2B OS=Arabidopsis thaliana OX=3702 GN=NTF2B PE=1 SV=1)

HSP 1 Score: 90.5 bits (223), Expect = 1.3e-17
Identity = 49/109 (44.95%), Postives = 61/109 (55.96%), Query Frame = 0


Query: 1   MEEDQADIVGKAFVEHYYQLFDNERASVSSLYQPDSMFTLEGQQILGGDDISTK------ 60
           M +   D V KAFVEHYY  FD  R  ++ LYQ  SM T EGQ+I G   I  K      
Sbjct: 1   MSQMDPDAVSKAFVEHYYSTFDTNRVGLAGLYQEASMLTFEGQKIQGVQSIVAKLTSLPF 60

Query: 61  ------FYTVDVQPSVTPASLLIFVSGSLELPDKEHPLRFSQTYELFPT 98
                   TVD QPS   + +L+FVSG+L+L  +EH L+FSQ + L PT
Sbjct: 61  QQCKHHISTVDCQPSGPASGMLVFVSGNLQLAGEEHALKFSQMFHLMPT 109

[Close]

BLAST of Sed0019629 vs. ExPASy Swiss-Prot
Match: Q9FZK4 (Nuclear transport factor 2A OS=Arabidopsis thaliana OX=3702 GN=NTF2A PE=1 SV=1)

HSP 1 Score: 84.7 bits (208), Expect = 6.9e-16
Identity = 46/100 (46.00%), Postives = 57/100 (57.00%), Query Frame = 0


Query: 7   DIVGKAFVEHYYQLFDNERASVSSLYQPDSMFTLEGQQILGGDDISTK------------ 66
           D V KAFVEHYY  FD  R  + SLYQ  SM T EGQ+I G  +I  K            
Sbjct: 4   DAVAKAFVEHYYSTFDANRPGLVSLYQEGSMLTFEGQKIQGSQNIVAKLTGLPFQQCKHN 63

Query: 67  FYTVDVQPSVTPASLLIFVSGSLELPDKEHPLRFSQTYEL 95
             TVD QPS     +L+FVSG+L+L  ++H L+FSQ + L
Sbjct: 64  ITTVDCQPSGPAGGMLVFVSGNLQLAGEQHALKFSQMFHL 103

[Close]

BLAST of Sed0019629 vs. ExPASy Swiss-Prot
Match: Q8NJ52 (Nuclear transport factor 2 OS=Davidiella tassiana OX=29918 GN=NTF2 PE=1 SV=1)

HSP 1 Score: 65.9 bits (159), Expect = 3.3e-10
Identity = 34/100 (34.00%), Postives = 54/100 (54.00%), Query Frame = 0


Query: 9   VGKAFVEHYYQLFDNERASVSSLYQPDSMFTLEGQQILGGDDISTKFY------------ 68
           + + F E YY+ FD +RA ++ LY+ +SM T E    LG  +I  K              
Sbjct: 7   IAQQFTEFYYKTFDTDRAQLAPLYRENSMLTFEQSPFLGTANIVGKLQELPFQRIEHQVA 66

Query: 69  TVDVQPSVTPASLLIFVSGSLELPDKEHPLRFSQTYELFP 97
           TVD QPS     +L+ VSG+L + ++  P+ ++QT++L P
Sbjct: 67  TVDAQPSNESGGILVVVSGALLVEEERRPMSYTQTFQLLP 106

[Close]

BLAST of Sed0019629 vs. ExPASy Swiss-Prot
Match: Q6FRC6 (Nuclear transport factor 2 OS=Candida glabrata (strain ATCC 2001 / CBS 138 / JCM 3761 / NBRC 0622 / NRRL Y-65) OX=284593 GN=NTF2 PE=3 SV=1)

HSP 1 Score: 65.5 bits (158), Expect = 4.3e-10
Identity = 32/100 (32.00%), Postives = 53/100 (53.00%), Query Frame = 0


Query: 9   VGKAFVEHYYQLFDNERASVSSLYQPDSMFTLEGQQILGGDDISTKFY------------ 68
           + + F E YY  FD++R+ + +LY+ +SM T E  Q+ G   I  K              
Sbjct: 8   LAQQFTEFYYNQFDSDRSQLGNLYRDESMLTFETSQLQGAKSIVEKLVSLPFQKVAHRIT 67

Query: 69  TVDVQPSVTPASLLIFVSGSLELPDKEHPLRFSQTYELFP 97
           T+D QP+     +L+ ++G L + D+++P RFSQ + L P
Sbjct: 68  TLDAQPASPNGDVLVMITGDLLIDDEQNPQRFSQVFHLIP 107

[Close]

BLAST of Sed0019629 vs. ExPASy TrEMBL
Match: A0A1S3B3B7 (nuclear transport factor 2 OS=Cucumis melo OX=3656 GN=LOC103485524 PE=4 SV=1)

HSP 1 Score: 142.5 bits (358), Expect = 1.0e-30
Identity = 70/109 (64.22%), Postives = 83/109 (76.15%), Query Frame = 0


Query: 1   MEEDQADIVGKAFVEHYYQLFDNERASVSSLYQPDSMFTLEGQQILGGDDISTKFY---- 60
           MEE+Q DI+GKAFVEHYY LFDNERAS+SSLYQPDSM T EGQQILG +DISTK      
Sbjct: 1   MEEEQGDIIGKAFVEHYYHLFDNERASLSSLYQPDSMLTFEGQQILGVNDISTKLQQLPF 60

Query: 61  --------TVDVQPSVTPASLLIFVSGSLELPDKEHPLRFSQTYELFPT 98
                   T+D QPS  P S+LIFVSGS+E+P++EHPLR+SQ + L P+
Sbjct: 61  ERCRHVVSTIDTQPSSVPGSILIFVSGSIEIPEEEHPLRYSQMFHLVPS 109

[Close]

BLAST of Sed0019629 vs. ExPASy TrEMBL
Match: A0A6J1F427 (nuclear transport factor 2B OS=Cucurbita moschata OX=3662 GN=LOC111440050 PE=4 SV=1)

HSP 1 Score: 141.0 bits (354), Expect = 3.0e-30
Identity = 72/107 (67.29%), Postives = 81/107 (75.70%), Query Frame = 0


Query: 3   EDQADIVGKAFVEHYYQLFDNERASVSSLYQPDSMFTLEGQQILGGDDISTKFY------ 62
           E++ADIVGKAFVEHYYQLFDNER S+S+LYQPDSM T EGQQILG DDIS++        
Sbjct: 2   EEEADIVGKAFVEHYYQLFDNERPSLSTLYQPDSMLTFEGQQILGVDDISSRLQQLPFER 61

Query: 63  ------TVDVQPSVTPASLLIFVSGSLELPDKEHPLRFSQTYELFPT 98
                 TVD QPS  P S+LIFVSGSLELPD+EH LRFSQ + L PT
Sbjct: 62  CRHVVSTVDTQPSAVPGSILIFVSGSLELPDEEHHLRFSQMFHLVPT 108

[Close]

BLAST of Sed0019629 vs. ExPASy TrEMBL
Match: A0A5D3BKX8 (Nuclear transport factor 2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold248G005990 PE=4 SV=1)

HSP 1 Score: 140.2 bits (352), Expect = 5.1e-30
Identity = 69/104 (66.35%), Postives = 80/104 (76.92%), Query Frame = 0


Query: 1   MEEDQADIVGKAFVEHYYQLFDNERASVSSLYQPDSMFTLEGQQILGGDDISTKFY---- 60
           MEE+Q DI+GKAFVEHYY LFDNERAS+SSLYQPDSM T EGQQILG +DISTK      
Sbjct: 1   MEEEQGDIIGKAFVEHYYHLFDNERASLSSLYQPDSMLTFEGQQILGVNDISTKLQQLPF 60

Query: 61  --------TVDVQPSVTPASLLIFVSGSLELPDKEHPLRFSQTY 93
                   T+D QPS  P S+LIFVSGS+E+P++EHPLR+SQ Y
Sbjct: 61  ERCRHVVSTIDTQPSSVPGSILIFVSGSIEIPEEEHPLRYSQVY 104

[Close]

BLAST of Sed0019629 vs. ExPASy TrEMBL
Match: A0A6J1KQ62 (nuclear transport factor 2B OS=Cucurbita maxima OX=3661 GN=LOC111495482 PE=4 SV=1)

HSP 1 Score: 136.7 bits (343), Expect = 5.7e-29
Identity = 70/107 (65.42%), Postives = 80/107 (74.77%), Query Frame = 0


Query: 3   EDQADIVGKAFVEHYYQLFDNERASVSSLYQPDSMFTLEGQQILGGDDISTKFY------ 62
           E++ADIVGKAFVEHYYQLFDNER S+S+LYQPDSM T EGQQILG  DIS++        
Sbjct: 2   EEEADIVGKAFVEHYYQLFDNERPSLSTLYQPDSMLTFEGQQILGVHDISSRLQQLPFER 61

Query: 63  ------TVDVQPSVTPASLLIFVSGSLELPDKEHPLRFSQTYELFPT 98
                 TVD QPS  P S+LIFVSGSLELP++EH LRFSQ + L PT
Sbjct: 62  CRHVVSTVDTQPSAVPGSILIFVSGSLELPEEEHHLRFSQMFHLVPT 108

[Close]

BLAST of Sed0019629 vs. ExPASy TrEMBL
Match: A0A0A0LUU9 (NTF2 domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G064690 PE=4 SV=1)

HSP 1 Score: 134.8 bits (338), Expect = 2.2e-28
Identity = 67/107 (62.62%), Postives = 80/107 (74.77%), Query Frame = 0


Query: 3   EDQADIVGKAFVEHYYQLFDNERASVSSLYQPDSMFTLEGQQILGGDDISTKFY------ 62
           E++ DI+GKAFVEHYYQLFDNERAS+SSLYQPDSM T EGQQILG  DIS+K        
Sbjct: 2   EEEGDIIGKAFVEHYYQLFDNERASLSSLYQPDSMLTFEGQQILGVHDISSKLQQLPFER 61

Query: 63  ------TVDVQPSVTPASLLIFVSGSLELPDKEHPLRFSQTYELFPT 98
                 T+D QPS    S+LIFVSGS+E+P++EHPLRFSQ + L P+
Sbjct: 62  CRHVVSTIDTQPSSVHGSILIFVSGSIEIPEEEHPLRFSQMFHLVPS 108

[Close]

BLAST of Sed0019629 vs. TAIR 10
Match: AT1G11570.2 (NTF2-like )

HSP 1 Score: 100.1 bits (248), Expect = 1.1e-21
Identity = 55/112 (49.11%), Postives = 68/112 (60.71%), Query Frame = 0


Query: 9   VGKAFVEHYYQLFDNERASVSSLYQPDSMFTLEGQQILGGDDISTK------------FY 68
           V  AFV HYY LFDN+R+S+SSLY P S+ T EGQ I G D+IS K              
Sbjct: 12  VASAFVNHYYHLFDNDRSSLSSLYNPTSLLTFEGQTIYGVDNISNKLKQLPFDQCHHLIS 71

Query: 69  TVDVQPSVTP---ASLLIFVSGSLELPDKEHPLRFSQTYELFPTLPIGFEVE 106
           TVD QPS        +L+FVSGS++L  ++HPLRFSQT+ L P L   F V+
Sbjct: 72  TVDSQPSSMAGGCGGILVFVSGSIQLHGEDHPLRFSQTFHLIPVLQGSFFVQ 123

[Close]

BLAST of Sed0019629 vs. TAIR 10
Match: AT1G11570.1 (NTF2-like )

HSP 1 Score: 92.4 bits (228), Expect = 2.4e-19
Identity = 51/101 (50.50%), Postives = 62/101 (61.39%), Query Frame = 0


Query: 9   VGKAFVEHYYQLFDNERASVSSLYQPDSMFTLEGQQILGGDDISTK------------FY 68
           V  AFV HYY LFDN+R+S+SSLY P S+ T EGQ I G D+IS K              
Sbjct: 12  VASAFVNHYYHLFDNDRSSLSSLYNPTSLLTFEGQTIYGVDNISNKLKQLPFDQCHHLIS 71

Query: 69  TVDVQPSVTP---ASLLIFVSGSLELPDKEHPLRFSQTYEL 95
           TVD QPS        +L+FVSGS++L  ++HPLRFSQ Y L
Sbjct: 72  TVDSQPSSMAGGCGGILVFVSGSIQLHGEDHPLRFSQVYLL 112

[Close]

BLAST of Sed0019629 vs. TAIR 10
Match: AT1G27970.1 (nuclear transport factor 2B )

HSP 1 Score: 90.5 bits (223), Expect = 9.0e-19
Identity = 49/109 (44.95%), Postives = 61/109 (55.96%), Query Frame = 0


Query: 1   MEEDQADIVGKAFVEHYYQLFDNERASVSSLYQPDSMFTLEGQQILGGDDISTK------ 60
           M +   D V KAFVEHYY  FD  R  ++ LYQ  SM T EGQ+I G   I  K      
Sbjct: 1   MSQMDPDAVSKAFVEHYYSTFDTNRVGLAGLYQEASMLTFEGQKIQGVQSIVAKLTSLPF 60

Query: 61  ------FYTVDVQPSVTPASLLIFVSGSLELPDKEHPLRFSQTYELFPT 98
                   TVD QPS   + +L+FVSG+L+L  +EH L+FSQ + L PT
Sbjct: 61  QQCKHHISTVDCQPSGPASGMLVFVSGNLQLAGEEHALKFSQMFHLMPT 109

[Close]

BLAST of Sed0019629 vs. TAIR 10
Match: AT1G27970.2 (nuclear transport factor 2B )

HSP 1 Score: 90.5 bits (223), Expect = 9.0e-19
Identity = 49/109 (44.95%), Postives = 61/109 (55.96%), Query Frame = 0


Query: 1   MEEDQADIVGKAFVEHYYQLFDNERASVSSLYQPDSMFTLEGQQILGGDDISTK------ 60
           M +   D V KAFVEHYY  FD  R  ++ LYQ  SM T EGQ+I G   I  K      
Sbjct: 1   MSQMDPDAVSKAFVEHYYSTFDTNRVGLAGLYQEASMLTFEGQKIQGVQSIVAKLTSLPF 60

Query: 61  ------FYTVDVQPSVTPASLLIFVSGSLELPDKEHPLRFSQTYELFPT 98
                   TVD QPS   + +L+FVSG+L+L  +EH L+FSQ + L PT
Sbjct: 61  QQCKHHISTVDCQPSGPASGMLVFVSGNLQLAGEEHALKFSQMFHLMPT 109

[Close]

BLAST of Sed0019629 vs. TAIR 10
Match: AT1G27310.1 (nuclear transport factor 2A )

HSP 1 Score: 84.7 bits (208), Expect = 4.9e-17
Identity = 46/100 (46.00%), Postives = 57/100 (57.00%), Query Frame = 0


Query: 7   DIVGKAFVEHYYQLFDNERASVSSLYQPDSMFTLEGQQILGGDDISTK------------ 66
           D V KAFVEHYY  FD  R  + SLYQ  SM T EGQ+I G  +I  K            
Sbjct: 4   DAVAKAFVEHYYSTFDANRPGLVSLYQEGSMLTFEGQKIQGSQNIVAKLTGLPFQQCKHN 63

Query: 67  FYTVDVQPSVTPASLLIFVSGSLELPDKEHPLRFSQTYEL 95
             TVD QPS     +L+FVSG+L+L  ++H L+FSQ + L
Sbjct: 64  ITTVDCQPSGPAGGMLVFVSGNLQLAGEQHALKFSQMFHL 103

The following BLAST results are available for this feature:

BLAST of Sed0019629 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008441397.1	2.1e-30	64.22	PREDICTED: nuclear transport factor 2 [Cucumis melo]	[more]
XP_022933198.1	6.2e-30	67.29	nuclear transport factor 2B [Cucurbita moschata] >KAG7019672.1 Nuclear transport...	[more]
KAG6584071.1	6.2e-30	67.29	Nuclear transport factor 2B, partial [Cucurbita argyrosperma subsp. sororia]	[more]
KAA0056878.1	1.1e-29	66.35	nuclear transport factor 2 [Cucumis melo var. makuwa] >TYJ99381.1 nuclear transp...	[more]
XP_023519037.1	5.3e-29	65.42	nuclear transport factor 2B [Cucurbita pepo subsp. pepo]	[more]

BLAST of Sed0019629 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9XJ54	1.5e-18	49.51	Nuclear transport factor 2 OS=Oryza sativa subsp. japonica OX=39947 GN=NTF2 PE=2...	[more]
Q9C7F5	1.3e-17	44.95	Nuclear transport factor 2B OS=Arabidopsis thaliana OX=3702 GN=NTF2B PE=1 SV=1	[more]
Q9FZK4	6.9e-16	46.00	Nuclear transport factor 2A OS=Arabidopsis thaliana OX=3702 GN=NTF2A PE=1 SV=1	[more]
Q8NJ52	3.3e-10	34.00	Nuclear transport factor 2 OS=Davidiella tassiana OX=29918 GN=NTF2 PE=1 SV=1	[more]
Q6FRC6	4.3e-10	32.00	Nuclear transport factor 2 OS=Candida glabrata (strain ATCC 2001 / CBS 138 / JCM...	[more]

BLAST of Sed0019629 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3B3B7	1.0e-30	64.22	nuclear transport factor 2 OS=Cucumis melo OX=3656 GN=LOC103485524 PE=4 SV=1	[more]
A0A6J1F427	3.0e-30	67.29	nuclear transport factor 2B OS=Cucurbita moschata OX=3662 GN=LOC111440050 PE=4 S...	[more]
A0A5D3BKX8	5.1e-30	66.35	Nuclear transport factor 2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaff...	[more]
A0A6J1KQ62	5.7e-29	65.42	nuclear transport factor 2B OS=Cucurbita maxima OX=3661 GN=LOC111495482 PE=4 SV=...	[more]
A0A0A0LUU9	2.2e-28	62.62	NTF2 domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G064690 PE=4 S...	[more]

BLAST of Sed0019629 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G11570.2	1.1e-21	49.11	NTF2-like	[more]
AT1G11570.1	2.4e-19	50.50	NTF2-like	[more]
AT1G27970.1	9.0e-19	44.95	nuclear transport factor 2B	[more]
AT1G27970.2	9.0e-19	44.95	nuclear transport factor 2B	[more]
AT1G27310.1	4.9e-17	46.00	nuclear transport factor 2A	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	3.10.450.50		coord: 1..109 e-value: 1.1E-19 score: 72.7
None	No IPR available	PANTHER	PTHR12612	NUCLEAR TRANSPORT FACTOR 2	coord: 4..105
None	No IPR available	PANTHER	PTHR12612:SF29	NTF2-LIKE PROTEIN	coord: 4..105
IPR002075	Nuclear transport factor 2	PFAM	PF02136	NTF2	coord: 9..97 e-value: 1.1E-13 score: 51.8
IPR018222	Nuclear transport factor 2, eukaryote	PROSITE	PS50177	NTF2_DOMAIN	coord: 9..109 score: 18.176086
IPR018222	Nuclear transport factor 2, eukaryote	CDD	cd00780	NTF2	coord: 5..96 e-value: 6.38172E-22 score: 81.1749
IPR032710	NTF2-like domain superfamily	SUPERFAMILY	54427	NTF2-like	coord: 3..97

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0019629.1	Sed0019629.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006913	nucleocytoplasmic transport
cellular_component	GO:0044613	nuclear pore central transport channel