Sed0019596 (gene) Chayote v1

Overview
NameSed0019596
Typegene
OrganismSechium edule (Chayote v1)
DescriptionUvrABC system protein A
LocationLG02: 52024803 .. 52026441 (-)
RNA-Seq ExpressionSed0019596
SyntenySed0019596
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATAGGCTAAATTGATTAATCCAGAAGGTGGTTTACGGTAGTCTACTACCAAACGCTCCCAAATGAGAGCAGAAGAACAATTTAGAAGGGAAATTTAGAAGGGAAACACAGAGAGCATTTCCTTTCTGCCATTTTCTCTTTCGAAATTGAGAGATCGAAGCGATAGAGGGAACAGAAATGGTGAATCCGCGAACTGACAAGTTGCTGAGAAGAACAACCATGGTGGCCACCGTCACTGCTTCATACTTTCTCTTAACCGCCGATTATGGCCCTCAACCAAATTTCCTCGATCCTGTGAGTCCTCTAAACTTTTCTCTCTGAAAATTTCTGTTATCTCTTTGATCGCTGAGAAAATGCTATGGAAAAAGCAGTCGGATCTTGGATTTTAAGTTGACTAGTTTCTAAGTTGATCGTCTTTTGCTTTTTAGCAATCCAGGCTTTGTCATCAAGCAATTTCACATGGATTTGTTATTGCATTGAATTCTATGCGTGTTTTCTGATGCAATTTTGCTTATCTGATCTAGATTCCTTTATCCGGTGATTGATTGAAACTCATCTTATCGCTATGGTTTTCTAGCTAAATTAGAATTGCGTTTTCTGCGGCTGATTTTTAATCGATTTCATGTTTTTGTATGTAATTTGTGCTACTTTAGTTCAAGTTCTTTTGGAAATTTGATTTCATTAGTATTTTACTGCCAGTCACAGTTCTTAATTTTTGTTAACAGTCTCGAATCTAATTACTGTTATTTTTTATTGTATTCAATTTTTTAGACATAATCTCTTGCTATATTGCATCGGTATAAGATATGAGAACTAAGAGTAAAGAATGAATTAATAATGGTTTTACATCTACATTGTAGTAAGTAAACAACTTAAAAGCATTTGACAATTCAGTTATTTACAACATCTGATGCAGCCGTGAACCTTTATCCACAAAATAATTTTAATTGAGTGTTCTACCTGTTCATATATGCTTGATTGACGACCTCGACTTGGGGTCAACAAGTTATGTTTCTTTAAAGGTCCGAGGTTGGAAATCCACGATTAAGCTTTATCCCTAGTTGTCTCCTCGAGTCCGGTCTCTAAGAAGATGCAGGTGTCCTGAGTATGTAGTGAGGCGATGTTTTGATTTTCAGGTTATAAAAGAAAAAAGAGGAGTGTTCTACTGACTCTTGTATGCTTGATTGACGTTTGTTCAAATTTCCTGCTTTATATTGTTGAAATCTTATTGCATGATTTGGAATGGCAGATCAAAAGGTTTATAAAGTCAGCCGAAAGTTCTGTTAAGGGTTACGTATTTGGATCGAATAATCAATCTCAAGAAAGTCAGATAGAGAAGCTCGGCTCCAATGGTGTCAAGGACCATCCATAATATGTAGACTCGAGAATTTTGTTACGAACTTATGTGTGTGTATATCTTGGACCTGCACTTTTTGTTTACACATTTCTTAAGCTTAGGTTGAGACAGAACATTAGTAGACCTTTTGTTGGTTATTACCAATCTTTTAATTACCTGAGAATCTATCTGAAATTCTGGGGAGTGCTTGATGAGAGATCATCTGTACTTTTTTTCAACTCCTGGCAAATTTACAGCATATTTGATTTGGGAGTTTCTCACATTTAACATTTTTTTTTTCAAA

mRNA sequence

ATAGGCTAAATTGATTAATCCAGAAGGTGGTTTACGGTAGTCTACTACCAAACGCTCCCAAATGAGAGCAGAAGAACAATTTAGAAGGGAAATTTAGAAGGGAAACACAGAGAGCATTTCCTTTCTGCCATTTTCTCTTTCGAAATTGAGAGATCGAAGCGATAGAGGGAACAGAAATGGTGAATCCGCGAACTGACAAGTTGCTGAGAAGAACAACCATGGTGGCCACCGTCACTGCTTCATACTTTCTCTTAACCGCCGATTATGGCCCTCAACCAAATTTCCTCGATCCTATCAAAAGGTTTATAAAGTCAGCCGAAAGTTCTGTTAAGGGTTACGTATTTGGATCGAATAATCAATCTCAAGAAAGTCAGATAGAGAAGCTCGGCTCCAATGGTGTCAAGGACCATCCATAATATGTAGACTCGAGAATTTTGTTACGAACTTATGTGTGTGTATATCTTGGACCTGCACTTTTTGTTTACACATTTCTTAAGCTTAGGTTGAGACAGAACATTAGTAGACCTTTTGTTGGTTATTACCAATCTTTTAATTACCTGAGAATCTATCTGAAATTCTGGGGAGTGCTTGATGAGAGATCATCTGTACTTTTTTTCAACTCCTGGCAAATTTACAGCATATTTGATTTGGGAGTTTCTCACATTTAACATTTTTTTTTTCAAA

Coding sequence (CDS)

ATGGTGAATCCGCGAACTGACAAGTTGCTGAGAAGAACAACCATGGTGGCCACCGTCACTGCTTCATACTTTCTCTTAACCGCCGATTATGGCCCTCAACCAAATTTCCTCGATCCTATCAAAAGGTTTATAAAGTCAGCCGAAAGTTCTGTTAAGGGTTACGTATTTGGATCGAATAATCAATCTCAAGAAAGTCAGATAGAGAAGCTCGGCTCCAATGGTGTCAAGGACCATCCATAA

Protein sequence

MVNPRTDKLLRRTTMVATVTASYFLLTADYGPQPNFLDPIKRFIKSAESSVKGYVFGSNNQSQESQIEKLGSNGVKDHP
Homology
[Close]
BLAST of Sed0019596 vs. NCBI nr
Match: XP_022147242.1 (uncharacterized protein LOC111016239 [Momordica charantia])

HSP 1 Score: 145.6 bits (366), Expect = 1.8e-31
Identity = 72/79 (91.14%), Postives = 76/79 (96.20%), Query Frame = 0 

Query: 1  MVNPRTDKLLRRTTMVATVTASYFLLTADYGPQPNFLDPIKRFIKSAESSVKGYVFGSNN 60
          MVNPRTDKLLRRTTMVATVTASYFLLTADYGPQPNFLDPI++FI SAESSVKG++FGSNN
Sbjct: 1  MVNPRTDKLLRRTTMVATVTASYFLLTADYGPQPNFLDPIQKFILSAESSVKGFIFGSNN 60

Query: 61 QSQESQIEKLGSNGVKDHP 80
          QSQESQ EKLGSNGVKD P
Sbjct: 61 QSQESQREKLGSNGVKDQP 79

[Close]
BLAST of Sed0019596 vs. NCBI nr
Match: XP_022924545.1 (uncharacterized protein LOC111431996 [Cucurbita moschata] >XP_022980455.1 uncharacterized protein LOC111479819 [Cucurbita maxima] >XP_023529151.1 uncharacterized protein LOC111791881 [Cucurbita pepo subsp. pepo] >KAG6582608.1 hypothetical protein SDJN03_22610, partial [Cucurbita argyrosperma subsp. sororia] >KAG7018999.1 hypothetical protein SDJN02_20876 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 143.3 bits (360), Expect = 9.1e-31
Identity = 70/79 (88.61%), Postives = 75/79 (94.94%), Query Frame = 0 

Query: 1  MVNPRTDKLLRRTTMVATVTASYFLLTADYGPQPNFLDPIKRFIKSAESSVKGYVFGSNN 60
          MVNPRTDKLLRRTTMVATVTASYFLLTADYGPQPNFLDPIK+FI S ESS+KG++FGSNN
Sbjct: 1  MVNPRTDKLLRRTTMVATVTASYFLLTADYGPQPNFLDPIKKFILSTESSIKGFIFGSNN 60

Query: 61 QSQESQIEKLGSNGVKDHP 80
          QSQ SQ EKLGSNGVKD+P
Sbjct: 61 QSQGSQSEKLGSNGVKDNP 79

[Close]
BLAST of Sed0019596 vs. NCBI nr
Match: XP_038906565.1 (uncharacterized protein LOC120092525 [Benincasa hispida] >XP_038906569.1 uncharacterized protein LOC120092525 [Benincasa hispida] >XP_038906579.1 uncharacterized protein LOC120092525 [Benincasa hispida])

HSP 1 Score: 139.8 bits (351), Expect = 1.0e-29
Identity = 69/79 (87.34%), Postives = 74/79 (93.67%), Query Frame = 0 

Query: 1  MVNPRTDKLLRRTTMVATVTASYFLLTADYGPQPNFLDPIKRFIKSAESSVKGYVFGSNN 60
          MVN RTDKLLRRTTMVATVTASYFLLTADYGPQPNFLDPIK+FI SAESS+KG++FGSN 
Sbjct: 1  MVNQRTDKLLRRTTMVATVTASYFLLTADYGPQPNFLDPIKKFILSAESSMKGFIFGSNK 60

Query: 61 QSQESQIEKLGSNGVKDHP 80
           SQESQ EKLGSNGVKD+P
Sbjct: 61 HSQESQTEKLGSNGVKDNP 79

[Close]
BLAST of Sed0019596 vs. NCBI nr
Match: XP_008438057.1 (PREDICTED: uncharacterized protein LOC103483279 [Cucumis melo])

HSP 1 Score: 137.1 bits (344), Expect = 6.5e-29
Identity = 67/78 (85.90%), Postives = 73/78 (93.59%), Query Frame = 0 

Query: 1  MVNPRTDKLLRRTTMVATVTASYFLLTADYGPQPNFLDPIKRFIKSAESSVKGYVFGSNN 60
          MVN RTDKLLRRTTMVATVTASYFLLTADYGPQPNFLDP+K+ I SAESS+KG++FGSNN
Sbjct: 1  MVNQRTDKLLRRTTMVATVTASYFLLTADYGPQPNFLDPVKKIILSAESSIKGFIFGSNN 60

Query: 61 QSQESQIEKLGSNGVKDH 79
          QSQE Q EKLGSNGVKD+
Sbjct: 61 QSQEGQREKLGSNGVKDN 78

[Close]
BLAST of Sed0019596 vs. NCBI nr
Match: XP_011650756.1 (uncharacterized protein LOC105434815 [Cucumis sativus] >KGN56522.1 hypothetical protein Csa_010552 [Cucumis sativus])

HSP 1 Score: 136.7 bits (343), Expect = 8.5e-29
Identity = 67/78 (85.90%), Postives = 73/78 (93.59%), Query Frame = 0 

Query: 1  MVNPRTDKLLRRTTMVATVTASYFLLTADYGPQPNFLDPIKRFIKSAESSVKGYVFGSNN 60
          MVN RTDKLLRRTTMVATVTASYFLLTADYGPQPNFLDP+K+ I SAESS+KG++FGSNN
Sbjct: 1  MVNQRTDKLLRRTTMVATVTASYFLLTADYGPQPNFLDPVKKVILSAESSIKGFIFGSNN 60

Query: 61 QSQESQIEKLGSNGVKDH 79
          QSQE Q EKLGSNGVKD+
Sbjct: 61 QSQEGQREKLGSNGVKDN 78

[Close]
BLAST of Sed0019596 vs. ExPASy TrEMBL
Match: A0A6J1D1U5 (uncharacterized protein LOC111016239 OS=Momordica charantia OX=3673 GN=LOC111016239 PE=4 SV=1)

HSP 1 Score: 145.6 bits (366), Expect = 8.8e-32
Identity = 72/79 (91.14%), Postives = 76/79 (96.20%), Query Frame = 0 

Query: 1  MVNPRTDKLLRRTTMVATVTASYFLLTADYGPQPNFLDPIKRFIKSAESSVKGYVFGSNN 60
          MVNPRTDKLLRRTTMVATVTASYFLLTADYGPQPNFLDPI++FI SAESSVKG++FGSNN
Sbjct: 1  MVNPRTDKLLRRTTMVATVTASYFLLTADYGPQPNFLDPIQKFILSAESSVKGFIFGSNN 60

Query: 61 QSQESQIEKLGSNGVKDHP 80
          QSQESQ EKLGSNGVKD P
Sbjct: 61 QSQESQREKLGSNGVKDQP 79

[Close]
BLAST of Sed0019596 vs. ExPASy TrEMBL
Match: A0A6J1IWD0 (uncharacterized protein LOC111479819 OS=Cucurbita maxima OX=3661 GN=LOC111479819 PE=4 SV=1)

HSP 1 Score: 143.3 bits (360), Expect = 4.4e-31
Identity = 70/79 (88.61%), Postives = 75/79 (94.94%), Query Frame = 0 

Query: 1  MVNPRTDKLLRRTTMVATVTASYFLLTADYGPQPNFLDPIKRFIKSAESSVKGYVFGSNN 60
          MVNPRTDKLLRRTTMVATVTASYFLLTADYGPQPNFLDPIK+FI S ESS+KG++FGSNN
Sbjct: 1  MVNPRTDKLLRRTTMVATVTASYFLLTADYGPQPNFLDPIKKFILSTESSIKGFIFGSNN 60

Query: 61 QSQESQIEKLGSNGVKDHP 80
          QSQ SQ EKLGSNGVKD+P
Sbjct: 61 QSQGSQSEKLGSNGVKDNP 79

[Close]
BLAST of Sed0019596 vs. ExPASy TrEMBL
Match: A0A6J1EFB9 (uncharacterized protein LOC111431996 OS=Cucurbita moschata OX=3662 GN=LOC111431996 PE=4 SV=1)

HSP 1 Score: 143.3 bits (360), Expect = 4.4e-31
Identity = 70/79 (88.61%), Postives = 75/79 (94.94%), Query Frame = 0 

Query: 1  MVNPRTDKLLRRTTMVATVTASYFLLTADYGPQPNFLDPIKRFIKSAESSVKGYVFGSNN 60
          MVNPRTDKLLRRTTMVATVTASYFLLTADYGPQPNFLDPIK+FI S ESS+KG++FGSNN
Sbjct: 1  MVNPRTDKLLRRTTMVATVTASYFLLTADYGPQPNFLDPIKKFILSTESSIKGFIFGSNN 60

Query: 61 QSQESQIEKLGSNGVKDHP 80
          QSQ SQ EKLGSNGVKD+P
Sbjct: 61 QSQGSQSEKLGSNGVKDNP 79

[Close]
BLAST of Sed0019596 vs. ExPASy TrEMBL
Match: A0A1S3AW35 (uncharacterized protein LOC103483279 OS=Cucumis melo OX=3656 GN=LOC103483279 PE=4 SV=1)

HSP 1 Score: 137.1 bits (344), Expect = 3.1e-29
Identity = 67/78 (85.90%), Postives = 73/78 (93.59%), Query Frame = 0 

Query: 1  MVNPRTDKLLRRTTMVATVTASYFLLTADYGPQPNFLDPIKRFIKSAESSVKGYVFGSNN 60
          MVN RTDKLLRRTTMVATVTASYFLLTADYGPQPNFLDP+K+ I SAESS+KG++FGSNN
Sbjct: 1  MVNQRTDKLLRRTTMVATVTASYFLLTADYGPQPNFLDPVKKIILSAESSIKGFIFGSNN 60

Query: 61 QSQESQIEKLGSNGVKDH 79
          QSQE Q EKLGSNGVKD+
Sbjct: 61 QSQEGQREKLGSNGVKDN 78

[Close]
BLAST of Sed0019596 vs. ExPASy TrEMBL
Match: A0A0A0L7H0 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G122460 PE=4 SV=1)

HSP 1 Score: 136.7 bits (343), Expect = 4.1e-29
Identity = 67/78 (85.90%), Postives = 73/78 (93.59%), Query Frame = 0 

Query: 1  MVNPRTDKLLRRTTMVATVTASYFLLTADYGPQPNFLDPIKRFIKSAESSVKGYVFGSNN 60
          MVN RTDKLLRRTTMVATVTASYFLLTADYGPQPNFLDP+K+ I SAESS+KG++FGSNN
Sbjct: 1  MVNQRTDKLLRRTTMVATVTASYFLLTADYGPQPNFLDPVKKVILSAESSIKGFIFGSNN 60

Query: 61 QSQESQIEKLGSNGVKDH 79
          QSQE Q EKLGSNGVKD+
Sbjct: 61 QSQEGQREKLGSNGVKDN 78

[Close]
BLAST of Sed0019596 vs. TAIR 10
Match: AT4G00530.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 9 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G01725.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). )

HSP 1 Score: 85.9 bits (211), Expect = 1.6e-17
Identity = 39/60 (65.00%), Postives = 49/60 (81.67%), Query Frame = 0 

Query: 2  VNPRTDKLLRRTTMVATVTASYFLLTADYGPQPNFLDPIKRFIKSAESSVKGYVFGSNNQ 61
          +NP+TDK++RRTTMVAT  ASYFLLT DYGP+PN LDPIKR I +A+ SVK ++FG   +
Sbjct: 1  MNPQTDKVVRRTTMVATAVASYFLLTGDYGPEPNVLDPIKRKILAAQDSVKQFIFGPKGE 60

[Close]
BLAST of Sed0019596 vs. TAIR 10
Match: AT1G01725.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G00530.1); Has 20 Blast hits to 20 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 20; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 70.9 bits (172), Expect = 5.3e-13
Identity = 32/62 (51.61%), Postives = 47/62 (75.81%), Query Frame = 0 

Query: 2  VNPRTDKLLRRTTMVATVTASYFLLTADYGPQPNFLDPIKRFIKSAESSVKGYVFGSNNQ 61
          +NP+ +K+++ T++VAT   SYFLLTADYGP+PN LDPI++ I SA+ SVK ++F S   
Sbjct: 1  MNPQIEKVVKVTSVVATAVVSYFLLTADYGPEPNALDPIRQRILSAQDSVKEFIFPSKKS 60

Query: 62 SQ 64
           +
Sbjct: 61 DK 62

The following BLAST results are available for this feature:
BLAST of Sed0019596 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022147242.11.8e-3191.14uncharacterized protein LOC111016239 [Momordica charantia][more]
XP_022924545.19.1e-3188.61uncharacterized protein LOC111431996 [Cucurbita moschata] >XP_022980455.1 unchar... [more]
XP_038906565.11.0e-2987.34uncharacterized protein LOC120092525 [Benincasa hispida] >XP_038906569.1 unchara... [more]
XP_008438057.16.5e-2985.90PREDICTED: uncharacterized protein LOC103483279 [Cucumis melo][more]
XP_011650756.18.5e-2985.90uncharacterized protein LOC105434815 [Cucumis sativus] >KGN56522.1 hypothetical ... [more]
BLAST of Sed0019596 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Sed0019596 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1D1U58.8e-3291.14uncharacterized protein LOC111016239 OS=Momordica charantia OX=3673 GN=LOC111016... [more]
A0A6J1IWD04.4e-3188.61uncharacterized protein LOC111479819 OS=Cucurbita maxima OX=3661 GN=LOC111479819... [more]
A0A6J1EFB94.4e-3188.61uncharacterized protein LOC111431996 OS=Cucurbita moschata OX=3662 GN=LOC1114319... [more]
A0A1S3AW353.1e-2985.90uncharacterized protein LOC103483279 OS=Cucumis melo OX=3656 GN=LOC103483279 PE=... [more]
A0A0A0L7H04.1e-2985.90Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G122460 PE=4 SV=1[more]
BLAST of Sed0019596 vs. TAIR 10
Match NameE-valueIdentityDescription
AT4G00530.11.6e-1765.00unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic... [more]
AT1G01725.15.3e-1351.61unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic... [more]
InterPro
Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 56..79
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 56..70
NoneNo IPR availablePANTHERPTHR37696ADENYLOSUCCINATE SYNTHETASE-RELATEDcoord: 1..72

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Sed0019596.1Sed0019596.1mRNA