Sed0019582 (gene) Chayote v1

Overview


Name	Sed0019582
Type	gene
Organism	Sechium edule (Chayote v1)
Description	Rubredoxin
Location	LG08: 31496151 .. 31499598 (+)
RNA-Seq Expression	Sed0019582
Synteny	Sed0019582

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATTTTAAATCATAGTTTTTTACACTCTTCTTCCATTGTTGTCAAGAAATCCTAATTTGTTGTTGCACCAATTCCAATCTCCATTTCAAACGCCGTGTTGTCAATCGCAGAAGATCTTTGAATTCGTCTTCGAGGTTCTTTGTTTTCATCTTGATTTCGATATTGTTAGGATTAATGGAGAATGCTATCTTCCACCGATATTTGCTTCTTTCCTCAATTTCGGCCCCAATTTTTCTCCAATTTTCGCATTTCAATCGTTCGTGAATGCGGCAATCGATCTTGCTCGAAGTGATTTGGTACTTCCTTTTCGATCTCTGAAGCTCATCGATTGATTGATTCTTGTCGCAGCAGAGCCGAATTTTCGGCTTGATTTTGCGATAGATTGCGGCGTTGCTGAAGGCGACTCCGAGGCGTATTGGAGAAAACCGCACAAGAGCTCGATTTCATCTGTATTGATCCAGATTCTGGCTTTCCGTCGGGACGGAAGGACAAATATGACGATATTGTTCGATCGCAGTCGGAACGCGATCATCAATTGGAGAGAAACTGTTGATTTTAGATTGATGTAAATCCGCGGCGTTAATCTGTTCTTGATTGAATTTCTTCAAACAAATGGAGATCAGAATCCAATCGATTTCGGTTTTTGCAATTTGTAGAGAAGAACAATTTGACCTAGTTTTATCGCCTGGTTTAAGAGGTAATCAATTTCTCTCTACTCTTCTCTTTCAATTTGATTGCGGATTTTGCTAAAGAATTTAAGGATTTGAATAGTTTGTATATTGCTGGTCACAAATGGTTAGGTATTCCACAAGTGTATGAAAGGGTCGATGTAATCCATTTCCACTCCTCGGTCACAGGTACGATCCCTGAAATCGGTATTTGTAGTCTCTGTTCACCCAACTTGTACTCAAAAAACAAAAAAGGTCAAGGTTTCTCCACTTATTTTACTATCAAATTTCTTATTTCTTCCATACATGACAAGTTGAAGAGAAAAACAATAATCCTTATACTTGATAGTAGGATTGAGGCATGACATTCATCTTAAACCTTTCTCATTAGTCATTACAAGACATATTTGTGATTGTTTGAATCGCTTGTGTGCATCTCAACTATTGTCTTCGAATACATACCGTGCATTTGGATGTCAACATTTAGATGTAAAGAAATTCGTAGAAAATTCATTCTTAGGTAAGTGGTTGTTATTGATTGAACTCACCACATCTTAGTTCTCTATAACCCTCCCTCTTGATACGCTACCTCTTGATCACTAGATTAGTGTATGATGATTAATATTTGATTGATAAAGAAAAGGTAACAATTTAATTTCTAGGCAGATCTTAGGTTCATATATAAATGGACCTTTTTTCTTCCAAAAGTAGGCCAAAGTAGAGACCCAAAAGCAAAGCCCAATTTTATCACCCTTTCATCTCCCTCTATCCCCACCACACCTTATCCTCCATCTCTCCTTCTCCTCCCAAACAAAAAGAAGAAGAGCATATACCCTTCTCCCATTCCCCCATGGATCCTTCTAATTCTTCCTCCTTTTGAACCTCCTCCTCCTCTTTCAAGCACACAAATTCAATACTCAAAAAAACCTCATTTCAATCCTTCATTCCTCCCTTCCAATGGCTGCAGCTGCTTATTCCTCTCCAAGACCCCCCACTCTCTCTTTCCATCTCTCCCAACCCCAACCCTCCCTCCCAATTCCCAGATTCAACTTCAAACCCCCCTCCCCTCCGTCATTGCACAGATCCACGGCAGCGGCGGCGAGACCCATCTTCAATTTCCCCCTCAACTCCACTGACGTCTCAAAGGAAGACAAGCCCACTTCGGACGAGCAGGTGACGGCGGAGGAGAGATTGGTGGACAAGCGGCGGCTGGAGGAGAAATTCGCAGTGCTGAACACAGGGATATATGAATGCAGGTCGTGCGGGCATAAGTTCGACGAGGCGGTGGGGGATCCGTCGTACCCGGTGCCGCCGGGGCTGCCATTCGAGAAGTTGCCAGAGGATTGGCGGTGTCCGACGTGTGGGGCGGCGAAGAGCTTCTTTGAGAGTAAGAGTGTGGAGATTGCTGGGTTTGCTCAGAATCAGCAGTATGGACTTGGAGGAAACACCTTGACTTCTGGGCAGAAGGCCGTTCTTATTTATGGCACTCTGTTGCTCTTCTTTGCTATCTTCCTGTCTGGCTATTTCTTGCAATGATGGAATCCAATCATCATCATCATCATCAAATCAGGTATTATTACTAACTTTACATCCAACTTATCCAACAAATGGGTAGGTTGTTACTAGTTTATCTAAGATGTGGCGATGATTACTTTTGTGGTTAAAATTAAATTGAAGTCTATTTTTGGCTTGAACTAGAGTTTTTTTTTTATAAAATAATATTTTGTGAAGAGTGATTGGAATGGGTAGTTTACTAGTTTATATAAGATGTTGGGATGATTAGTTTAGTATTTAAAATTAAATTGAATTGTATTTTGTTTTTTGTTTTTTTTTTAATATCCTGGGTGGAGTGGGAGGATTGAACCTATGAGGTTTTCAATATAAGTTGTCAATTGAGCTACTTTTATTTTGGCCAATTAAAGTGTAATTGATAGTATATTATATGGAATTATGGCCGTTAAGTTATTGAATATGAATTTTTTTAAAAAAAGTACAAATTGAGAGAAGGGAGACCAATAAACTTTCTGAAATAATATGAGAGTCTTGTTAATGTGGTGTTGAACTGGACTTCTATCCAACAATGAAATTACAATAATCTTTCTTTTTTTTTAATCATTTGTTAAAGATTAATGTTTGAGGTAATCTAGTCAAACTTAAATTAAAATGAATTTAGAAGGAAAACTTTTTTTTTAATCACTGGAAAAAAAAATTAAGGTTTAAGGTATCGAGTGAGACCTTGATTTCTTATAGGAATTAGAAATTAGTATGATGCTAAGTTTAGTGATGGGATTAACTATTAAGACTCGTAAAAGTTTAATGATTAAAATTGTAATTTTTATATATTTTGTTATATGCATACTTGAATTGTATTTCTAATGCATTTGTTGAATTTCAGGTGGATTGAGTAAATTATAAAGGGAGTTTGTGTATTTGGTTTGGTGGACTCCAATTCTTACTGAATTTTTTATGTTGACAAAACAAAAACAAATAACACTGTTGATTTATATAATATATAAAGTTGACTCTCAATCTTTCTTGATCTTGGCGAAGTCAATGTACAAATGAAATCAACGTAAGAATGTAAGTTATTTTTTCTTTTTATAACTGGTCATCTAAAAATTACCAAAATTTTGGGATGTTGCCTTTTTAAATCTGAACAAGAGATTCGTAATTCATGCTGAATTGTTTATAGTGCACATATTTTGCTTACTATCCTTCACAGTTTTTTCTTCTTAACATATATCTTTTTTAATATTCAAATCAACTTAAAGCATAACTCAA

mRNA sequence

ATTTTAAATCATAGTTTTTTACACTCTTCTTCCATTGTTGTCAAGAAATCCTAATTTGTTGTTGCACCAATTCCAATCTCCATTTCAAACGCCGTGTTGTCAATCGCAGAAGATCTTTGAATTCGTCTTCGAGGTTCTTTGTTTTCATCTTGATTTCGATATTGTTAGGATTAATGGAGAATGCTATCTTCCACCGATATTTGCTTCTTTCCTCAATTTCGGCCCCAATTTTTCTCCAATTTTCGCATTTCAATCGTTCGTGAATGCGGCAATCGATCTTGCTCGAAGTGATTTGGTACTTCCTTTTCGATCTCTGAAGCTCATCGATTGATTGATTCTTGTCGCAGCAGAGCCGAATTTTCGGCTTGATTTTGCGATAGATTGCGGCGTTGCTGAAGGCGACTCCGAGGCGTATTGGAGAAAACCGCACAAGAGCTCGATTTCATCTGTATTGATCCAGATTCTGGCTTTCCGTCGGGACGGAAGGACAAATATGACGATATTGTTCGATCGCAGTCGGAACGCGATCATCAATTGGAGAGAAACTGTTGATTTTAGATTGATGTAAATCCGCGGCGTTAATCTGTTCTTGATTGAATTTCTTCAAACAAATGGAGATCAGAATCCAATCGATTTCGGTTTTTGCAATTTGTAGAGAAGAACAATTTGACCTAGTTTTATCGCCTGGTTTAAGAGGTATTCCACAAGTGTATGAAAGGGTCGATGTAATCCATTTCCACTCCTCGGTCACAGGTACGATCCCTGAAATCGGTATTTGTAGTCTCTGTTCACCCAACTTGTACTCAAAAAACAAAAAAGGTCAAGGTTTCTCCACTTATTTTACTATCAAATTTCTTATTTCTTCCATACATGACAAGTTGAAGAGAAAAACAATAATCCTTATACTTGATAGTAGGATTGAGGCATGACATTCATCTTAAACCTTTCTCATTAGTCATTACAAGACATATTTGTGATTGTTTGAATCGCTTGTGTGCATCTCAACTATTGTCTTCGAATACATACCGTGCATTTGGATGTCAACATTTAGATGTAAAGAAATTCGTAGAAAATTCATTCTTAGGTAAGTGGTTGTTATTGATTGAACTCACCACATCTTAGTTCTCTATAACCCTCCCTCTTGATACGCTACCTCTTGATCACTAGATTAGTGTATGATGATTAATATTTGATTGATAAAGAAAAGGTAACAATTTAATTTCTAGGCAGATCTTAGGTTCATATATAAATGGACCTTTTTTCTTCCAAAAGTAGGCCAAAGTAGAGACCCAAAAGCAAAGCCCAATTTTATCACCCTTTCATCTCCCTCTATCCCCACCACACCTTATCCTCCATCTCTCCTTCTCCTCCCAAACAAAAAGAAGAAGAGCATATACCCTTCTCCCATTCCCCCATGGATCCTTCTAATTCTTCCTCCTTTTGAACCTCCTCCTCCTCTTTCAAGCACACAAATTCAATACTCAAAAAAACCTCATTTCAATCCTTCATTCCTCCCTTCCAATGGCTGCAGCTGCTTATTCCTCTCCAAGACCCCCCACTCTCTCTTTCCATCTCTCCCAACCCCAACCCTCCCTCCCAATTCCCAGATTCAACTTCAAACCCCCCTCCCCTCCGTCATTGCACAGATCCACGGCAGCGGCGGCGAGACCCATCTTCAATTTCCCCCTCAACTCCACTGACGTCTCAAAGGAAGACAAGCCCACTTCGGACGAGCAGGTGACGGCGGAGGAGAGATTGGTGGACAAGCGGCGGCTGGAGGAGAAATTCGCAGTGCTGAACACAGGGATATATGAATGCAGGTCGTGCGGGCATAAGTTCGACGAGGCGGTGGGGGATCCGTCGTACCCGGTGCCGCCGGGGCTGCCATTCGAGAAGTTGCCAGAGGATTGGCGGTGTCCGACGTGTGGGGCGGCGAAGAGCTTCTTTGAGAGTAAGAGTGTGGAGATTGCTGGGTTTGCTCAGAATCAGCAGTATGGACTTGGAGGAAACACCTTGACTTCTGGGCAGAAGGCCGTTCTTATTTATGGCACTCTGTTGCTCTTCTTTGCTATCTTCCTGTCTGGCTATTTCTTGCAATGATGGAATCCAATCATCATCATCATCATCAAATCAGGTGGATTGAGTAAATTATAAAGGGAGTTTGTGTATTTGGTTTGGTGGACTCCAATTCTTACTGAATTTTTTATGTTGACAAAACAAAAACAAATAACACTGTTGATTTATATAATATATAAAGTTGACTCTCAATCTTTCTTGATCTTGGCGAAGTCAATGTACAAATGAAATCAACGTAAGAATGTAAGTTATTTTTTCTTTTTATAACTGGTCATCTAAAAATTACCAAAATTTTGGGATGTTGCCTTTTTAAATCTGAACAAGAGATTCGTAATTCATGCTGAATTGTTTATAGTGCACATATTTTGCTTACTATCCTTCACAGTTTTTTCTTCTTAACATATATCTTTTTTAATATTCAAATCAACTTAAAGCATAACTCAA

Coding sequence (CDS)

ATGGCTGCAGCTGCTTATTCCTCTCCAAGACCCCCCACTCTCTCTTTCCATCTCTCCCAACCCCAACCCTCCCTCCCAATTCCCAGATTCAACTTCAAACCCCCCTCCCCTCCGTCATTGCACAGATCCACGGCAGCGGCGGCGAGACCCATCTTCAATTTCCCCCTCAACTCCACTGACGTCTCAAAGGAAGACAAGCCCACTTCGGACGAGCAGGTGACGGCGGAGGAGAGATTGGTGGACAAGCGGCGGCTGGAGGAGAAATTCGCAGTGCTGAACACAGGGATATATGAATGCAGGTCGTGCGGGCATAAGTTCGACGAGGCGGTGGGGGATCCGTCGTACCCGGTGCCGCCGGGGCTGCCATTCGAGAAGTTGCCAGAGGATTGGCGGTGTCCGACGTGTGGGGCGGCGAAGAGCTTCTTTGAGAGTAAGAGTGTGGAGATTGCTGGGTTTGCTCAGAATCAGCAGTATGGACTTGGAGGAAACACCTTGACTTCTGGGCAGAAGGCCGTTCTTATTTATGGCACTCTGTTGCTCTTCTTTGCTATCTTCCTGTCTGGCTATTTCTTGCAATGA

Protein sequence

MAAAAYSSPRPPTLSFHLSQPQPSLPIPRFNFKPPSPPSLHRSTAAAARPIFNFPLNSTDVSKEDKPTSDEQVTAEERLVDKRRLEEKFAVLNTGIYECRSCGHKFDEAVGDPSYPVPPGLPFEKLPEDWRCPTCGAAKSFFESKSVEIAGFAQNQQYGLGGNTLTSGQKAVLIYGTLLLFFAIFLSGYFLQ

Homology

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BLAST of Sed0019582 vs. NCBI nr
Match: XP_004139218.2 (uncharacterized protein LOC101219075 [Cucumis sativus] >XP_011648770.1 uncharacterized protein LOC101219075 [Cucumis sativus] >XP_011648771.1 uncharacterized protein LOC101219075 [Cucumis sativus] >KGN60832.1 hypothetical protein Csa_019394 [Cucumis sativus])

HSP 1 Score: 296.2 bits (757), Expect = 2.0e-76
Identity = 159/204 (77.94%), Postives = 166/204 (81.37%), Query Frame = 0


Query: 4   AAYSSPRPPTLSFHLSQPQPSLPIPRFNFKPPSP-----PSLHRSTAAAARPIFNFPLNS 63
           A YSS RP TLSFHLS  QPSLPIPRFNFKPP P     P L RS  +AARPI  F LNS
Sbjct: 2   AVYSSARPTTLSFHLS--QPSLPIPRFNFKPPIPATAAIPPLLRS--SAARPISIFTLNS 61

Query: 64  TDVSKEDKPTSDE----------QVTAEERLVDKRRLEEKFAVLNTGIYECRSCGHKFDE 123
            DVSKEDKPTSD+           V  EE   DKRRLEEKFAVLNTGIYECRSCGHKFDE
Sbjct: 62  IDVSKEDKPTSDDPNTPVPLPVVAVEEEEEKFDKRRLEEKFAVLNTGIYECRSCGHKFDE 121

Query: 124 AVGDPSYPVPPGLPFEKLPEDWRCPTCGAAKSFFESKSVEIAGFAQNQQYGLGGNTLTSG 183
           AVGDP+YP+ PGLPFE+LPEDWRCPTCGAAKSFFESKSVEIAGFAQNQQYGLGGNTLTSG
Sbjct: 122 AVGDPTYPIAPGLPFEQLPEDWRCPTCGAAKSFFESKSVEIAGFAQNQQYGLGGNTLTSG 181

Query: 184 QKAVLIYGTLLLFFAIFLSGYFLQ 193
           QKAVLIYG+L  FFA+FLSGYFLQ
Sbjct: 182 QKAVLIYGSLFFFFALFLSGYFLQ 201

[Close]

BLAST of Sed0019582 vs. NCBI nr
Match: XP_022946609.1 (uncharacterized protein LOC111450624 [Cucurbita moschata] >KAG7030288.1 rub, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 295.4 bits (755), Expect = 3.5e-76
Identity = 159/203 (78.33%), Postives = 170/203 (83.74%), Query Frame = 0


Query: 1   MAAAAYSSPRPPTLSFHLSQPQPSLPIPRFNFKPP--SPPSLHRSTAAAARPIFNFPLNS 60
           MAAAAY+S R PTLSFHLS  QPS+P PRFNFKPP  + P L RS  AAARPI  F LNS
Sbjct: 1   MAAAAYASAR-PTLSFHLS--QPSVPSPRFNFKPPLVAFPPLQRS--AAARPIPIFTLNS 60

Query: 61  TDVSKEDKPTSD---------EQVTAEERLVDKRRLEEKFAVLNTGIYECRSCGHKFDEA 120
            DVSKEDKPTSD         E+  A E  +D+RR+EEKFAVLNTGIYECRSCGHKFDEA
Sbjct: 61  IDVSKEDKPTSDDPDFAAVVGEEAAAAEEKLDRRRMEEKFAVLNTGIYECRSCGHKFDEA 120

Query: 121 VGDPSYPVPPGLPFEKLPEDWRCPTCGAAKSFFESKSVEIAGFAQNQQYGLGGNTLTSGQ 180
           VGDP+YP+ PGLPFE+LPEDWRCPTCGAAKSFFESKSVEIAGFAQNQQYGLGGNTLTSGQ
Sbjct: 121 VGDPTYPIAPGLPFEQLPEDWRCPTCGAAKSFFESKSVEIAGFAQNQQYGLGGNTLTSGQ 180

Query: 181 KAVLIYGTLLLFFAIFLSGYFLQ 193
           KAVLIYGTL  FFA+FLSGYFLQ
Sbjct: 181 KAVLIYGTLFFFFALFLSGYFLQ 198

[Close]

BLAST of Sed0019582 vs. NCBI nr
Match: XP_023545844.1 (uncharacterized protein LOC111805157 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 292.0 bits (746), Expect = 3.8e-75
Identity = 158/204 (77.45%), Postives = 169/204 (82.84%), Query Frame = 0


Query: 1   MAAAAYSSPRPPTLSFHLSQPQPSLPIPRFNFKPP--SPPSLHRSTAAAARPIFNFPLNS 60
           MAAAAY+S R PTLSFHLS  QPS+P PRFNFKPP  + P L RS  AAARPI  F LNS
Sbjct: 1   MAAAAYASAR-PTLSFHLS--QPSVPSPRFNFKPPLVAFPPLQRS--AAARPIPIFTLNS 60

Query: 61  TDVSKEDKPTS----------DEQVTAEERLVDKRRLEEKFAVLNTGIYECRSCGHKFDE 120
            DVSKEDKPTS          +E   A E  +D+RR+EEKFAVLNTGIYECRSCGHKFDE
Sbjct: 61  IDVSKEDKPTSEDPDLAAVVGEEAAEAAEEKLDRRRMEEKFAVLNTGIYECRSCGHKFDE 120

Query: 121 AVGDPSYPVPPGLPFEKLPEDWRCPTCGAAKSFFESKSVEIAGFAQNQQYGLGGNTLTSG 180
           AVGDP+YP+ PGLPFE+LPEDWRCPTCGAAKSFFESKSVEIAGFAQNQQYGLGGNTLTSG
Sbjct: 121 AVGDPTYPIAPGLPFEQLPEDWRCPTCGAAKSFFESKSVEIAGFAQNQQYGLGGNTLTSG 180

Query: 181 QKAVLIYGTLLLFFAIFLSGYFLQ 193
           QKAVLIYGTL  FFA+FLSGYFLQ
Sbjct: 181 QKAVLIYGTLFFFFALFLSGYFLQ 199

[Close]

BLAST of Sed0019582 vs. NCBI nr
Match: ADN33910.1 (rubredoxin [Cucumis melo subsp. melo] >KAA0063629.1 rubredoxin [Cucumis melo var. makuwa] >TYK18397.1 rubredoxin [Cucumis melo var. makuwa])

HSP 1 Score: 290.4 bits (742), Expect = 1.1e-74
Identity = 157/202 (77.72%), Postives = 166/202 (82.18%), Query Frame = 0


Query: 4   AAYSSPRPPTLSFHLSQPQPSLPIPRFNFKPP---SPPSLHRSTAAAARPIFNFPLNSTD 63
           A YSS R PTLSFHLS  QPSLPIPRFNFKPP   + P L R   +AARPI  F LNS D
Sbjct: 2   AVYSSAR-PTLSFHLS--QPSLPIPRFNFKPPVAATIPPLQR--LSAARPISIFTLNSID 61

Query: 64  VSKEDKPTSDE----------QVTAEERLVDKRRLEEKFAVLNTGIYECRSCGHKFDEAV 123
           VSKEDKPTSD+           V  EE   DKRRLEE+FAVLNTGIYECRSCGHKFDEAV
Sbjct: 62  VSKEDKPTSDDPNTPSPPPVVAVEKEEEKFDKRRLEERFAVLNTGIYECRSCGHKFDEAV 121

Query: 124 GDPSYPVPPGLPFEKLPEDWRCPTCGAAKSFFESKSVEIAGFAQNQQYGLGGNTLTSGQK 183
           GDP+YP+ PGLPFE+LPEDWRCPTCGAAKSFFESKSVEIAGFAQNQQYGLGGNTLTSGQK
Sbjct: 122 GDPTYPIAPGLPFEQLPEDWRCPTCGAAKSFFESKSVEIAGFAQNQQYGLGGNTLTSGQK 181

Query: 184 AVLIYGTLLLFFAIFLSGYFLQ 193
           AVLIYG+LL FFA+FLSGYFLQ
Sbjct: 182 AVLIYGSLLFFFALFLSGYFLQ 198

[Close]

BLAST of Sed0019582 vs. NCBI nr
Match: XP_016901839.1 (PREDICTED: uncharacterized protein LOC103499548 [Cucumis melo] >XP_016901842.1 PREDICTED: uncharacterized protein LOC103499548 [Cucumis melo])

HSP 1 Score: 290.4 bits (742), Expect = 1.1e-74
Identity = 157/202 (77.72%), Postives = 166/202 (82.18%), Query Frame = 0


Query: 4   AAYSSPRPPTLSFHLSQPQPSLPIPRFNFKPP---SPPSLHRSTAAAARPIFNFPLNSTD 63
           A YSS R PTLSFHLS  QPSLPIPRFNFKPP   + P L R   +AARPI  F LNS D
Sbjct: 80  AVYSSAR-PTLSFHLS--QPSLPIPRFNFKPPVAATIPPLQR--LSAARPISIFTLNSID 139

Query: 64  VSKEDKPTSDE----------QVTAEERLVDKRRLEEKFAVLNTGIYECRSCGHKFDEAV 123
           VSKEDKPTSD+           V  EE   DKRRLEE+FAVLNTGIYECRSCGHKFDEAV
Sbjct: 140 VSKEDKPTSDDPNTPSPPPVVAVEKEEEKFDKRRLEERFAVLNTGIYECRSCGHKFDEAV 199

Query: 124 GDPSYPVPPGLPFEKLPEDWRCPTCGAAKSFFESKSVEIAGFAQNQQYGLGGNTLTSGQK 183
           GDP+YP+ PGLPFE+LPEDWRCPTCGAAKSFFESKSVEIAGFAQNQQYGLGGNTLTSGQK
Sbjct: 200 GDPTYPIAPGLPFEQLPEDWRCPTCGAAKSFFESKSVEIAGFAQNQQYGLGGNTLTSGQK 259

Query: 184 AVLIYGTLLLFFAIFLSGYFLQ 193
           AVLIYG+LL FFA+FLSGYFLQ
Sbjct: 260 AVLIYGSLLFFFALFLSGYFLQ 276

[Close]

BLAST of Sed0019582 vs. ExPASy Swiss-Prot
Match: P73068 (Rubredoxin OS=Synechocystis sp. (strain PCC 6803 / Kazusa) OX=1111708 GN=rub PE=3 SV=1)

HSP 1 Score: 94.7 bits (234), Expect = 1.2e-18
Identity = 47/112 (41.96%), Postives = 69/112 (61.61%), Query Frame = 0


Query: 80  VDKRRLEEKFAVLNTGIYECRSCGHKFDEAVGDPSYPVPPGLPFEKLPEDWRCPTCGAAK 139
           + +R  E+  A L +  +ECR+CG+ +  + GD    V PG PFE LP +W+CP CGA +
Sbjct: 1   MSERPPEKTLAELASPNHECRACGYVYIPSQGDQKTSVSPGTPFEALPLNWKCPVCGAPR 60

Query: 140 SFFESKSVEIA--GFAQNQQYGLGGNTLTSGQKAVLIYGTLLLFFAIFLSGY 190
           ++F S     A  GFA+N  YG G N ++ G+K +LI+G+L + F  FLS Y
Sbjct: 61  NYFISTGETDAPSGFAENLNYGFGFNRMSGGKKNLLIFGSLFVIFLFFLSLY 112

[Close]

BLAST of Sed0019582 vs. ExPASy Swiss-Prot
Match: Q9XBL8 (Rubredoxin OS=Trichormus variabilis (strain ATCC 29413 / PCC 7937) OX=240292 GN=rub PE=3 SV=1)

HSP 1 Score: 90.5 bits (223), Expect = 2.2e-17
Identity = 48/107 (44.86%), Postives = 65/107 (60.75%), Query Frame = 0


Query: 90  AVLNTGI--YECRSCGHKFDEAVGDPSYPVPPGLPFEKLPEDWRCPTCGAAKSFFES--K 149
           AV NT +  +ECRSCG+ ++   GD  + + P  PF +LP +WRCP C A K+ F +   
Sbjct: 5   AVENTVLDRFECRSCGYVYEPEKGDSKHDIAPETPFAELPINWRCPVCTAKKAAFSNIGP 64

Query: 150 SVEIAGFAQNQQYGLGGNTLTSGQKAVLIYGTLLLFFAIFLSGYFLQ 193
           +   +GF +N  YGLG N LT  QK +LI+G L L F  F+S Y LQ
Sbjct: 65  AGTASGFRENLGYGLGVNKLTPAQKNILIFGALALGFLFFISLYGLQ 111

[Close]

BLAST of Sed0019582 vs. ExPASy Swiss-Prot
Match: Q9WWN1 (Rubredoxin OS=Nostoc sp. (strain PCC 7120 / SAG 25.82 / UTEX 2576) OX=103690 GN=rub PE=3 SV=2)

HSP 1 Score: 89.7 bits (221), Expect = 3.8e-17
Identity = 48/107 (44.86%), Postives = 65/107 (60.75%), Query Frame = 0


Query: 90  AVLNTGI--YECRSCGHKFDEAVGDPSYPVPPGLPFEKLPEDWRCPTCGAAKSFFES--K 149
           AV NT +  +ECRSCG+ ++   GD  + + P  PF +LP +WRCP C A K+ F +   
Sbjct: 5   AVENTVLDRFECRSCGYVYEPEKGDNKHDIAPETPFAELPINWRCPVCTAKKAAFTNIGP 64

Query: 150 SVEIAGFAQNQQYGLGGNTLTSGQKAVLIYGTLLLFFAIFLSGYFLQ 193
           +   +GF +N  YGLG N LT  QK +LI+G L L F  F+S Y LQ
Sbjct: 65  AGTASGFRENLGYGLGVNKLTPAQKNILIFGALALGFLFFISLYGLQ 111

[Close]

BLAST of Sed0019582 vs. ExPASy Swiss-Prot
Match: O26258 (Probable rubredoxin OS=Methanothermobacter thermautotrophicus (strain ATCC 29096 / DSM 1053 / JCM 10044 / NBRC 100330 / Delta H) OX=187420 GN=MTH_155 PE=3 SV=1)

HSP 1 Score: 68.6 bits (166), Expect = 9.0e-11
Identity = 26/47 (55.32%), Postives = 32/47 (68.09%), Query Frame = 0


Query: 97  YECRSCGHKFDEAVGDPSYPVPPGLPFEKLPEDWRCPTCGAAKSFFE 144
           Y+CR CG+ +D   G+P    PPG PFE LPE WRCP+CGA K  F+
Sbjct: 14  YKCRVCGYIYDPEKGEPRTDTPPGTPFEDLPETWRCPSCGAKKKMFK 60

[Close]

BLAST of Sed0019582 vs. ExPASy Swiss-Prot
Match: P00270 (Rubredoxin OS=Desulfovibrio gigas OX=879 PE=1 SV=1)

HSP 1 Score: 67.8 bits (164), Expect = 1.5e-10
Identity = 26/50 (52.00%), Postives = 33/50 (66.00%), Query Frame = 0


Query: 96  IYECRSCGHKFDEAVGDPSYPVPPGLPFEKLPEDWRCPTCGAAKSFFESK 146
           IY C  CG+++D A GDP   + PG  FE LP+DW CP CGA+K  FE +
Sbjct: 3   IYVCTVCGYEYDPAKGDPDSGIKPGTKFEDLPDDWACPVCGASKDAFEKQ 52

[Close]

BLAST of Sed0019582 vs. ExPASy TrEMBL
Match: A0A0A0LJE4 (Rubredoxin-like domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G012140 PE=4 SV=1)

HSP 1 Score: 296.2 bits (757), Expect = 9.9e-77
Identity = 159/204 (77.94%), Postives = 166/204 (81.37%), Query Frame = 0


Query: 4   AAYSSPRPPTLSFHLSQPQPSLPIPRFNFKPPSP-----PSLHRSTAAAARPIFNFPLNS 63
           A YSS RP TLSFHLS  QPSLPIPRFNFKPP P     P L RS  +AARPI  F LNS
Sbjct: 2   AVYSSARPTTLSFHLS--QPSLPIPRFNFKPPIPATAAIPPLLRS--SAARPISIFTLNS 61

Query: 64  TDVSKEDKPTSDE----------QVTAEERLVDKRRLEEKFAVLNTGIYECRSCGHKFDE 123
            DVSKEDKPTSD+           V  EE   DKRRLEEKFAVLNTGIYECRSCGHKFDE
Sbjct: 62  IDVSKEDKPTSDDPNTPVPLPVVAVEEEEEKFDKRRLEEKFAVLNTGIYECRSCGHKFDE 121

Query: 124 AVGDPSYPVPPGLPFEKLPEDWRCPTCGAAKSFFESKSVEIAGFAQNQQYGLGGNTLTSG 183
           AVGDP+YP+ PGLPFE+LPEDWRCPTCGAAKSFFESKSVEIAGFAQNQQYGLGGNTLTSG
Sbjct: 122 AVGDPTYPIAPGLPFEQLPEDWRCPTCGAAKSFFESKSVEIAGFAQNQQYGLGGNTLTSG 181

Query: 184 QKAVLIYGTLLLFFAIFLSGYFLQ 193
           QKAVLIYG+L  FFA+FLSGYFLQ
Sbjct: 182 QKAVLIYGSLFFFFALFLSGYFLQ 201

[Close]

BLAST of Sed0019582 vs. ExPASy TrEMBL
Match: A0A6J1G4B1 (uncharacterized protein LOC111450624 OS=Cucurbita moschata OX=3662 GN=LOC111450624 PE=4 SV=1)

HSP 1 Score: 295.4 bits (755), Expect = 1.7e-76
Identity = 159/203 (78.33%), Postives = 170/203 (83.74%), Query Frame = 0


Query: 1   MAAAAYSSPRPPTLSFHLSQPQPSLPIPRFNFKPP--SPPSLHRSTAAAARPIFNFPLNS 60
           MAAAAY+S R PTLSFHLS  QPS+P PRFNFKPP  + P L RS  AAARPI  F LNS
Sbjct: 1   MAAAAYASAR-PTLSFHLS--QPSVPSPRFNFKPPLVAFPPLQRS--AAARPIPIFTLNS 60

Query: 61  TDVSKEDKPTSD---------EQVTAEERLVDKRRLEEKFAVLNTGIYECRSCGHKFDEA 120
            DVSKEDKPTSD         E+  A E  +D+RR+EEKFAVLNTGIYECRSCGHKFDEA
Sbjct: 61  IDVSKEDKPTSDDPDFAAVVGEEAAAAEEKLDRRRMEEKFAVLNTGIYECRSCGHKFDEA 120

Query: 121 VGDPSYPVPPGLPFEKLPEDWRCPTCGAAKSFFESKSVEIAGFAQNQQYGLGGNTLTSGQ 180
           VGDP+YP+ PGLPFE+LPEDWRCPTCGAAKSFFESKSVEIAGFAQNQQYGLGGNTLTSGQ
Sbjct: 121 VGDPTYPIAPGLPFEQLPEDWRCPTCGAAKSFFESKSVEIAGFAQNQQYGLGGNTLTSGQ 180

Query: 181 KAVLIYGTLLLFFAIFLSGYFLQ 193
           KAVLIYGTL  FFA+FLSGYFLQ
Sbjct: 181 KAVLIYGTLFFFFALFLSGYFLQ 198

[Close]

BLAST of Sed0019582 vs. ExPASy TrEMBL
Match: A0A1S4E0U3 (uncharacterized protein LOC103499548 OS=Cucumis melo OX=3656 GN=LOC103499548 PE=4 SV=1)

HSP 1 Score: 290.4 bits (742), Expect = 5.4e-75
Identity = 157/202 (77.72%), Postives = 166/202 (82.18%), Query Frame = 0


Query: 4   AAYSSPRPPTLSFHLSQPQPSLPIPRFNFKPP---SPPSLHRSTAAAARPIFNFPLNSTD 63
           A YSS R PTLSFHLS  QPSLPIPRFNFKPP   + P L R   +AARPI  F LNS D
Sbjct: 80  AVYSSAR-PTLSFHLS--QPSLPIPRFNFKPPVAATIPPLQR--LSAARPISIFTLNSID 139

Query: 64  VSKEDKPTSDE----------QVTAEERLVDKRRLEEKFAVLNTGIYECRSCGHKFDEAV 123
           VSKEDKPTSD+           V  EE   DKRRLEE+FAVLNTGIYECRSCGHKFDEAV
Sbjct: 140 VSKEDKPTSDDPNTPSPPPVVAVEKEEEKFDKRRLEERFAVLNTGIYECRSCGHKFDEAV 199

Query: 124 GDPSYPVPPGLPFEKLPEDWRCPTCGAAKSFFESKSVEIAGFAQNQQYGLGGNTLTSGQK 183
           GDP+YP+ PGLPFE+LPEDWRCPTCGAAKSFFESKSVEIAGFAQNQQYGLGGNTLTSGQK
Sbjct: 200 GDPTYPIAPGLPFEQLPEDWRCPTCGAAKSFFESKSVEIAGFAQNQQYGLGGNTLTSGQK 259

Query: 184 AVLIYGTLLLFFAIFLSGYFLQ 193
           AVLIYG+LL FFA+FLSGYFLQ
Sbjct: 260 AVLIYGSLLFFFALFLSGYFLQ 276

[Close]

BLAST of Sed0019582 vs. ExPASy TrEMBL
Match: A0A5A7VDM5 (Rubredoxin OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold456G001210 PE=4 SV=1)

HSP 1 Score: 290.4 bits (742), Expect = 5.4e-75
Identity = 157/202 (77.72%), Postives = 166/202 (82.18%), Query Frame = 0


Query: 4   AAYSSPRPPTLSFHLSQPQPSLPIPRFNFKPP---SPPSLHRSTAAAARPIFNFPLNSTD 63
           A YSS R PTLSFHLS  QPSLPIPRFNFKPP   + P L R   +AARPI  F LNS D
Sbjct: 2   AVYSSAR-PTLSFHLS--QPSLPIPRFNFKPPVAATIPPLQR--LSAARPISIFTLNSID 61

Query: 64  VSKEDKPTSDE----------QVTAEERLVDKRRLEEKFAVLNTGIYECRSCGHKFDEAV 123
           VSKEDKPTSD+           V  EE   DKRRLEE+FAVLNTGIYECRSCGHKFDEAV
Sbjct: 62  VSKEDKPTSDDPNTPSPPPVVAVEKEEEKFDKRRLEERFAVLNTGIYECRSCGHKFDEAV 121

Query: 124 GDPSYPVPPGLPFEKLPEDWRCPTCGAAKSFFESKSVEIAGFAQNQQYGLGGNTLTSGQK 183
           GDP+YP+ PGLPFE+LPEDWRCPTCGAAKSFFESKSVEIAGFAQNQQYGLGGNTLTSGQK
Sbjct: 122 GDPTYPIAPGLPFEQLPEDWRCPTCGAAKSFFESKSVEIAGFAQNQQYGLGGNTLTSGQK 181

Query: 184 AVLIYGTLLLFFAIFLSGYFLQ 193
           AVLIYG+LL FFA+FLSGYFLQ
Sbjct: 182 AVLIYGSLLFFFALFLSGYFLQ 198

[Close]

BLAST of Sed0019582 vs. ExPASy TrEMBL
Match: E5GBR8 (Rubredoxin OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1)

HSP 1 Score: 290.4 bits (742), Expect = 5.4e-75
Identity = 157/202 (77.72%), Postives = 166/202 (82.18%), Query Frame = 0


Query: 4   AAYSSPRPPTLSFHLSQPQPSLPIPRFNFKPP---SPPSLHRSTAAAARPIFNFPLNSTD 63
           A YSS R PTLSFHLS  QPSLPIPRFNFKPP   + P L R   +AARPI  F LNS D
Sbjct: 2   AVYSSAR-PTLSFHLS--QPSLPIPRFNFKPPVAATIPPLQR--LSAARPISIFTLNSID 61

Query: 64  VSKEDKPTSDE----------QVTAEERLVDKRRLEEKFAVLNTGIYECRSCGHKFDEAV 123
           VSKEDKPTSD+           V  EE   DKRRLEE+FAVLNTGIYECRSCGHKFDEAV
Sbjct: 62  VSKEDKPTSDDPNTPSPPPVVAVEKEEEKFDKRRLEERFAVLNTGIYECRSCGHKFDEAV 121

Query: 124 GDPSYPVPPGLPFEKLPEDWRCPTCGAAKSFFESKSVEIAGFAQNQQYGLGGNTLTSGQK 183
           GDP+YP+ PGLPFE+LPEDWRCPTCGAAKSFFESKSVEIAGFAQNQQYGLGGNTLTSGQK
Sbjct: 122 GDPTYPIAPGLPFEQLPEDWRCPTCGAAKSFFESKSVEIAGFAQNQQYGLGGNTLTSGQK 181

Query: 184 AVLIYGTLLLFFAIFLSGYFLQ 193
           AVLIYG+LL FFA+FLSGYFLQ
Sbjct: 182 AVLIYGSLLFFFALFLSGYFLQ 198

[Close]

BLAST of Sed0019582 vs. TAIR 10
Match: AT1G54500.1 (Rubredoxin-like superfamily protein )

HSP 1 Score: 214.5 bits (545), Expect = 7.3e-56
Identity = 107/157 (68.15%), Postives = 127/157 (80.89%), Query Frame = 0


Query: 36  SPPSLHRSTAAAARPIFNFPLNSTDVSKEDKPTSDEQVTAEERLVDKRRLEEKFAVLNTG 95
           S PS H    A +R     PL+S+D ++E   T  ++V   E  ++KRR+EEKFAVLNTG
Sbjct: 45  SYPSHHSRYLAVSRDDAATPLSSSDQTQE---TETKEV---EDTIEKRRMEEKFAVLNTG 104

Query: 96  IYECRSCGHKFDEAVGDPSYPVPPGLPFEKLPEDWRCPTCGAAKSFFESKSVEIAGFAQN 155
           IYECRSCG+K+DE+ GDPSYP+PPG  F+KLPEDWRCPTCGAA+SFFESK VEIAGFAQN
Sbjct: 105 IYECRSCGYKYDESAGDPSYPIPPGFQFDKLPEDWRCPTCGAAQSFFESKMVEIAGFAQN 164

Query: 156 QQYGLGGNTLTSGQKAVLIYGTLLLFFAIFLSGYFLQ 193
           QQYGLGGN LTSGQK  LI+G+LLLFFA+FLSGYF+Q
Sbjct: 165 QQYGLGGNALTSGQKTGLIFGSLLLFFALFLSGYFIQ 195

The following BLAST results are available for this feature:

BLAST of Sed0019582 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004139218.2	2.0e-76	77.94	uncharacterized protein LOC101219075 [Cucumis sativus] >XP_011648770.1 uncharact...	[more]
XP_022946609.1	3.5e-76	78.33	uncharacterized protein LOC111450624 [Cucurbita moschata] >KAG7030288.1 rub, par...	[more]
XP_023545844.1	3.8e-75	77.45	uncharacterized protein LOC111805157 [Cucurbita pepo subsp. pepo]	[more]
ADN33910.1	1.1e-74	77.72	rubredoxin [Cucumis melo subsp. melo] >KAA0063629.1 rubredoxin [Cucumis melo var...	[more]
XP_016901839.1	1.1e-74	77.72	PREDICTED: uncharacterized protein LOC103499548 [Cucumis melo] >XP_016901842.1 P...	[more]

BLAST of Sed0019582 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P73068	1.2e-18	41.96	Rubredoxin OS=Synechocystis sp. (strain PCC 6803 / Kazusa) OX=1111708 GN=rub PE=...	[more]
Q9XBL8	2.2e-17	44.86	Rubredoxin OS=Trichormus variabilis (strain ATCC 29413 / PCC 7937) OX=240292 GN=...	[more]
Q9WWN1	3.8e-17	44.86	Rubredoxin OS=Nostoc sp. (strain PCC 7120 / SAG 25.82 / UTEX 2576) OX=103690 GN=...	[more]
O26258	9.0e-11	55.32	Probable rubredoxin OS=Methanothermobacter thermautotrophicus (strain ATCC 29096...	[more]
P00270	1.5e-10	52.00	Rubredoxin OS=Desulfovibrio gigas OX=879 PE=1 SV=1	[more]

BLAST of Sed0019582 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LJE4	9.9e-77	77.94	Rubredoxin-like domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G01...	[more]
A0A6J1G4B1	1.7e-76	78.33	uncharacterized protein LOC111450624 OS=Cucurbita moschata OX=3662 GN=LOC1114506...	[more]
A0A1S4E0U3	5.4e-75	77.72	uncharacterized protein LOC103499548 OS=Cucumis melo OX=3656 GN=LOC103499548 PE=...	[more]
A0A5A7VDM5	5.4e-75	77.72	Rubredoxin OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold456G001210 PE...	[more]
E5GBR8	5.4e-75	77.72	Rubredoxin OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1	[more]

BLAST of Sed0019582 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G54500.1	7.3e-56	68.15	Rubredoxin-like superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR024935	Rubredoxin domain	PRINTS	PR00163	RUBREDOXIN	coord: 126..142 score: 57.12 coord: 96..112 score: 44.12
IPR024935	Rubredoxin domain	PFAM	PF00301	Rubredoxin	coord: 97..142 e-value: 3.1E-17 score: 62.3
IPR024935	Rubredoxin domain	CDD	cd00730	rubredoxin	coord: 97..143 e-value: 2.57926E-22 score: 83.1242
None	No IPR available	GENE3D	2.20.28.10		coord: 89..144 e-value: 7.3E-22 score: 78.8
None	No IPR available	PIRSR	PIRSR000071-1	PIRSR000071-1	coord: 97..144 e-value: 2.1E-18 score: 63.8
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..44
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 12..26
None	No IPR available	PANTHER	PTHR47627	RUBREDOXIN	coord: 20..192
None	No IPR available	SUPERFAMILY	57802	Rubredoxin-like	coord: 93..159
IPR018527	Rubredoxin, iron-binding site	PROSITE	PS00202	RUBREDOXIN	coord: 126..136
IPR024934	Rubredoxin-like domain	PROSITE	PS50903	RUBREDOXIN_LIKE	coord: 94..145 score: 13.328513

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0019582.1	Sed0019582.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0043448	alkane catabolic process
biological_process	GO:0022900	electron transport chain
biological_process	GO:0010207	photosystem II assembly
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0009055	electron transfer activity
molecular_function	GO:0005506	iron ion binding
molecular_function	GO:0046872	metal ion binding