Sed0019554 (gene) Chayote v1

Overview


Name	Sed0019554
Type	gene
Organism	Sechium edule (Chayote v1)
Description	DNA polymerase subunit gamma-1 like
Location	LG05: 44316355 .. 44316732 (-)
RNA-Seq Expression	Sed0019554
Synteny	Sed0019554

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexonpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAATGGCTACAACCAAAGAGGAGAGGACCAGAGTGGAAGCATGGATGGGCAAGCCAAACCCTAGGCTCTGTTTCTTCTCCCCCACCTCAATTGCTCACCATTTTTGGCATTGTCATTTTCTTGCTTTGGTTCTCTCAGCACACAGGCCATGAAGCTCAAGTGTATAGATCAACTGCCAATTTCCAACTGGTTCTTTTCTTGCTGCCCATCTTGGTGGTTTTCCTCATGTCTTCATATTCCATTGGTGGACTGATCAACTTCCGATTTCGGCAGCTGACTACCGGGTCGACTCGACGCGGTGCCTCGCCATGGACCATTGCCATTTTGGTCCCTCTCATTCTGGTTTTGCTTTATTTCCGAGCCTCGTTTCATTGA

mRNA sequence

ATGGAATGGCTACAACCAAAGAGGAGAGGACCAGAGTGGAAGCATGGATGGGCAAGCCAAACCCTAGGCTCTGTTTCTTCTCCCCCACCTCAATTGCTCACCATTTTTGGCATTGTCATTTTCTTGCTTTGGTTCTCTCAGCACACAGGCCATGAAGCTCAAGTGTATAGATCAACTGCCAATTTCCAACTGGTTCTTTTCTTGCTGCCCATCTTGGTGGTTTTCCTCATGTCTTCATATTCCATTGGTGGACTGATCAACTTCCGATTTCGGCAGCTGACTACCGGGTCGACTCGACGCGGTGCCTCGCCATGGACCATTGCCATTTTGGTCCCTCTCATTCTGGTTTTGCTTTATTTCCGAGCCTCGTTTCATTGA

Coding sequence (CDS)

ATGGAATGGCTACAACCAAAGAGGAGAGGACCAGAGTGGAAGCATGGATGGGCAAGCCAAACCCTAGGCTCTGTTTCTTCTCCCCCACCTCAATTGCTCACCATTTTTGGCATTGTCATTTTCTTGCTTTGGTTCTCTCAGCACACAGGCCATGAAGCTCAAGTGTATAGATCAACTGCCAATTTCCAACTGGTTCTTTTCTTGCTGCCCATCTTGGTGGTTTTCCTCATGTCTTCATATTCCATTGGTGGACTGATCAACTTCCGATTTCGGCAGCTGACTACCGGGTCGACTCGACGCGGTGCCTCGCCATGGACCATTGCCATTTTGGTCCCTCTCATTCTGGTTTTGCTTTATTTCCGAGCCTCGTTTCATTGA

Protein sequence

MEWLQPKRRGPEWKHGWASQTLGSVSSPPPQLLTIFGIVIFLLWFSQHTGHEAQVYRSTANFQLVLFLLPILVVFLMSSYSIGGLINFRFRQLTTGSTRRGASPWTIAILVPLILVLLYFRASFH

Homology

[Close]

BLAST of Sed0019554 vs. NCBI nr
Match: KAG7010871.1 (hypothetical protein SDJN02_27669, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 183.3 bits (464), Expect = 1.3e-42
Identity = 95/127 (74.80%), Postives = 105/127 (82.68%), Query Frame = 0


Query: 1   MEWLQPKRRGPEWKHGWASQTL-GSVSSPPPQLLTIFGIVIFLLWFSQH-TGHEAQVYRS 60
           MEWL+PKRRGPEWK  W  QTL GSVSSPPPQLLTIFGIVI LLWFSQ  TG++ Q++RS
Sbjct: 1   MEWLEPKRRGPEWKQEWTGQTLGGSVSSPPPQLLTIFGIVIVLLWFSQSTTGYDTQMHRS 60

Query: 61  TANFQLVLFLLPILVVFLMSSYSIGGLINFRFRQLTTGSTRRGASPWTIAILVPLILVLL 120
            +NFQL+LFLLPILV+F MSSYS+ GLIN R  +  TGS RRGASP TI ILV LILVLL
Sbjct: 61  ASNFQLLLFLLPILVIFFMSSYSMCGLINLRSWRSATGSPRRGASPLTITILVSLILVLL 120

Query: 121 YFRASFH 126
           YFR SFH
Sbjct: 121 YFRPSFH 127

[Close]

BLAST of Sed0019554 vs. NCBI nr
Match: KGN61894.1 (hypothetical protein Csa_005908 [Cucumis sativus])

HSP 1 Score: 153.7 bits (387), Expect = 1.1e-33
Identity = 86/128 (67.19%), Postives = 95/128 (74.22%), Query Frame = 0


Query: 1   MEWLQPKRRGPEWKHG--WASQTLGSVSSPPPQLLTIFGIVIFLLWFSQ-HTGHEAQVYR 60
           M+   PKRRGPEWK G     QTL SVS PP QLL IFGIVI LLWFSQ + GHEAQ+ R
Sbjct: 1   MDCFYPKRRGPEWKRGLTGTGQTLSSVSPPPIQLLIIFGIVIVLLWFSQFNAGHEAQLNR 60

Query: 61  STANFQLVLFLLPILVVFLMSSYSIGGLINFRFRQLTTGSTRRGASPWTIAILVPLILVL 120
           S   FQL LFLLPI V+F M SYS   LINF FR+  TG  +RGASPWTIAILV LILVL
Sbjct: 61  S---FQLFLFLLPIFVIFFMYSYSSSRLINFGFRRSPTGLAQRGASPWTIAILVLLILVL 120

Query: 121 LYFRASFH 126
           LY+++SFH
Sbjct: 121 LYYQSSFH 125

[Close]

BLAST of Sed0019554 vs. NCBI nr
Match: OAY52378.1 (hypothetical protein MANES_04G078400v8 [Manihot esculenta])

HSP 1 Score: 153.3 bits (386), Expect = 1.4e-33
Identity = 76/129 (58.91%), Postives = 99/129 (76.74%), Query Frame = 0


Query: 1   MEWLQPKRRGPEWKHGWASQTLGSVSS-PPPQLLTIFGIVIFLLWFSQHTGHEAQVYRST 60
           MEW  PKRRGP+WKHGWASQTL S+S+ PPP LLTIF IVI LLW SQ+TG++AQ +++ 
Sbjct: 1   MEWFHPKRRGPQWKHGWASQTLASMSTPPPPPLLTIFFIVILLLWLSQYTGYKAQFHQTA 60

Query: 61  ANFQLVLFLLPILVVFLMSSYSIGGLINFRFRQ---LTTGSTRRGASPWTIAILVPLILV 120
            NFQL LFLLPIL++FL++SYS   ++ FR RQ     + S   G+SPW IAI V ++LV
Sbjct: 61  INFQLFLFLLPILLIFLIASYSTDWMLYFRPRQPQHHRSRSAHGGSSPWVIAIFVAVLLV 120

Query: 121 LLYFRASFH 126
           LL ++++FH
Sbjct: 121 LLSYQSTFH 129

[Close]

BLAST of Sed0019554 vs. NCBI nr
Match: KAF3434655.1 (hypothetical protein FNV43_RR21740 [Rhamnella rubrinervis])

HSP 1 Score: 152.5 bits (384), Expect = 2.4e-33
Identity = 75/126 (59.52%), Postives = 95/126 (75.40%), Query Frame = 0


Query: 1   MEWLQPKRRGPEWKHGWASQTLGSVSSPPPQLLTIFGIVIFLLWFSQHTGHEAQVYRSTA 60
           MEW  PKRRGPEWK GW  QTL S+S+PP  LLTIFGIVI LLWFSQ+TG++AQ+ ++T 
Sbjct: 1   MEWFYPKRRGPEWKQGWTGQTLTSISAPPLHLLTIFGIVIVLLWFSQYTGYKAQLQQTTV 60

Query: 61  NFQLVLFLLPILVVFLMSSY-SIGGLINFRFRQLTTGSTRRGASPWTIAILVPLILVLLY 120
           NFQL L +LPIL++F M+ Y S GG  NF+ R+      R G SPW +AIL+ L+LVLL 
Sbjct: 61  NFQLFLMVLPILLIFFMALYSSSGGWFNFQLRR-PEAFHRAGGSPWGVAILLVLLLVLLS 120

Query: 121 FRASFH 126
           +++SFH
Sbjct: 121 YQSSFH 125

[Close]

BLAST of Sed0019554 vs. NCBI nr
Match: KDP27587.1 (hypothetical protein JCGZ_19592 [Jatropha curcas])

HSP 1 Score: 151.4 bits (381), Expect = 5.3e-33
Identity = 72/127 (56.69%), Postives = 94/127 (74.02%), Query Frame = 0


Query: 1   MEWLQPKRRGPEWKHGWASQTLGSVSSPPPQLLTIFGIVIFLLWFSQHTGHEAQVYRSTA 60
           MEW  PKRRGP+WK GWA QT+ S+S+PPP LLTIFGIVI LLW SQ+TG++AQ+  S  
Sbjct: 1   MEWFYPKRRGPDWKQGWAGQTMNSISTPPPSLLTIFGIVILLLWLSQYTGYKAQLRHSAI 60

Query: 61  NFQLVLFLLPILVVFLMSSYSIGGLINFRFRQLTTGSTR--RGASPWTIAILVPLILVLL 120
           NFQL +FLLPIL++ L++  S   ++ FR RQ    S R   G+SPW +AI V ++LVLL
Sbjct: 61  NFQLFIFLLPILLILLLACSSTNWMLYFRHRQPQPDSARPDSGSSPWGMAIFVVVLLVLL 120

Query: 121 YFRASFH 126
            +++SFH
Sbjct: 121 SYQSSFH 127

[Close]

BLAST of Sed0019554 vs. ExPASy TrEMBL
Match: A0A0A0LLH8 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G263890 PE=4 SV=1)

HSP 1 Score: 153.7 bits (387), Expect = 5.1e-34
Identity = 86/128 (67.19%), Postives = 95/128 (74.22%), Query Frame = 0


Query: 1   MEWLQPKRRGPEWKHG--WASQTLGSVSSPPPQLLTIFGIVIFLLWFSQ-HTGHEAQVYR 60
           M+   PKRRGPEWK G     QTL SVS PP QLL IFGIVI LLWFSQ + GHEAQ+ R
Sbjct: 1   MDCFYPKRRGPEWKRGLTGTGQTLSSVSPPPIQLLIIFGIVIVLLWFSQFNAGHEAQLNR 60

Query: 61  STANFQLVLFLLPILVVFLMSSYSIGGLINFRFRQLTTGSTRRGASPWTIAILVPLILVL 120
           S   FQL LFLLPI V+F M SYS   LINF FR+  TG  +RGASPWTIAILV LILVL
Sbjct: 61  S---FQLFLFLLPIFVIFFMYSYSSSRLINFGFRRSPTGLAQRGASPWTIAILVLLILVL 120

Query: 121 LYFRASFH 126
           LY+++SFH
Sbjct: 121 LYYQSSFH 125

[Close]

BLAST of Sed0019554 vs. ExPASy TrEMBL
Match: A0A2C9W0P5 (Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_04G078400 PE=4 SV=1)

HSP 1 Score: 153.3 bits (386), Expect = 6.7e-34
Identity = 76/129 (58.91%), Postives = 99/129 (76.74%), Query Frame = 0


Query: 1   MEWLQPKRRGPEWKHGWASQTLGSVSS-PPPQLLTIFGIVIFLLWFSQHTGHEAQVYRST 60
           MEW  PKRRGP+WKHGWASQTL S+S+ PPP LLTIF IVI LLW SQ+TG++AQ +++ 
Sbjct: 1   MEWFHPKRRGPQWKHGWASQTLASMSTPPPPPLLTIFFIVILLLWLSQYTGYKAQFHQTA 60

Query: 61  ANFQLVLFLLPILVVFLMSSYSIGGLINFRFRQ---LTTGSTRRGASPWTIAILVPLILV 120
            NFQL LFLLPIL++FL++SYS   ++ FR RQ     + S   G+SPW IAI V ++LV
Sbjct: 61  INFQLFLFLLPILLIFLIASYSTDWMLYFRPRQPQHHRSRSAHGGSSPWVIAIFVAVLLV 120

Query: 121 LLYFRASFH 126
           LL ++++FH
Sbjct: 121 LLSYQSTFH 129

[Close]

BLAST of Sed0019554 vs. ExPASy TrEMBL
Match: A0A067JUL1 (Uncharacterized protein OS=Jatropha curcas OX=180498 GN=JCGZ_19592 PE=4 SV=1)

HSP 1 Score: 151.4 bits (381), Expect = 2.6e-33
Identity = 72/127 (56.69%), Postives = 94/127 (74.02%), Query Frame = 0


Query: 1   MEWLQPKRRGPEWKHGWASQTLGSVSSPPPQLLTIFGIVIFLLWFSQHTGHEAQVYRSTA 60
           MEW  PKRRGP+WK GWA QT+ S+S+PPP LLTIFGIVI LLW SQ+TG++AQ+  S  
Sbjct: 1   MEWFYPKRRGPDWKQGWAGQTMNSISTPPPSLLTIFGIVILLLWLSQYTGYKAQLRHSAI 60

Query: 61  NFQLVLFLLPILVVFLMSSYSIGGLINFRFRQLTTGSTR--RGASPWTIAILVPLILVLL 120
           NFQL +FLLPIL++ L++  S   ++ FR RQ    S R   G+SPW +AI V ++LVLL
Sbjct: 61  NFQLFIFLLPILLILLLACSSTNWMLYFRHRQPQPDSARPDSGSSPWGMAIFVVVLLVLL 120

Query: 121 YFRASFH 126
            +++SFH
Sbjct: 121 SYQSSFH 127

[Close]

BLAST of Sed0019554 vs. ExPASy TrEMBL
Match: B9STD1 (Uncharacterized protein OS=Ricinus communis OX=3988 GN=RCOM_0660950 PE=4 SV=1)

HSP 1 Score: 147.9 bits (372), Expect = 2.8e-32
Identity = 71/130 (54.62%), Postives = 91/130 (70.00%), Query Frame = 0


Query: 1   MEWLQPKRRGPEWKHGWASQTLGSVSSPPPQLLTIFGIVIFLLWFSQHTGHEAQVYRSTA 60
           MEW  P+RRGPEWK GW  QTLGS+S PPP LL IFGIVI LLW SQ+T ++AQ++ S  
Sbjct: 1   MEWFYPRRRGPEWKQGWTGQTLGSISIPPPPLLVIFGIVILLLWLSQYTDYKAQLHHSAI 60

Query: 61  NFQLVLFLLPILVVFLMSSYSIGGLINFRFRQLTTG-----STRRGASPWTIAILVPLIL 120
           NFQL LFLLP+L++ L++SYS   +  FR RQ  +G     S    + PW IA  V ++L
Sbjct: 61  NFQLFLFLLPVLLILLIASYSTNWMPYFRLRQPRSGRESVRSAEGSSQPWGIAAFVAVLL 120

Query: 121 VLLYFRASFH 126
           VLL +++SFH
Sbjct: 121 VLLSYQSSFH 130

[Close]

BLAST of Sed0019554 vs. ExPASy TrEMBL
Match: A0A2P5ED06 (Transmembrane protein OS=Trema orientale OX=63057 GN=TorRG33x02_208280 PE=4 SV=1)

HSP 1 Score: 146.7 bits (369), Expect = 6.3e-32
Identity = 69/127 (54.33%), Postives = 92/127 (72.44%), Query Frame = 0


Query: 1   MEWLQPKRRGPEWKHGWASQTLGSVSSPPPQLLTIFGIVIFLLWFSQHTGHEAQVYRSTA 60
           MEW  PKRRGP+WK GW SQT+ S+S+P   LL IF IV+ LLW SQ+TG++AQ+ ++  
Sbjct: 1   MEWFYPKRRGPQWKQGWTSQTVASISAPSFHLLAIFSIVMVLLWLSQYTGYKAQLQQTAV 60

Query: 61  NFQLVLFLLPILVVFLMSSYSIGGLINFRFR--QLTTGSTRRGASPWTIAILVPLILVLL 120
           NFQL +FLLP+L++  M+SYS  GL NFRFR  +  T     G+SPW +A  V L+LVLL
Sbjct: 61  NFQLFMFLLPVLLIVFMASYSSSGLFNFRFRRPRPDTPMQLAGSSPWGVAFFVALLLVLL 120

Query: 121 YFRASFH 126
            +++SFH
Sbjct: 121 SYQSSFH 127

[Close]

BLAST of Sed0019554 vs. TAIR 10
Match: AT5G42146.1 (unknown protein; Has 98 Blast hits to 98 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 98; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 76.6 bits (187), Expect = 1.5e-14
Identity = 41/130 (31.54%), Postives = 71/130 (54.62%), Query Frame = 0


Query: 1   MEWLQPKRRGPEWKHGWASQTLGSVSSPPPQLLTIFGIVIFLLWFSQHTGHEAQVYRSTA 60
           M W   +RRG  WK GW  +TL + S+PP  LL +  I+  LL+ S +  ++ +V ++ A
Sbjct: 1   MGWFIKERRGGSWKRGWLEETLLTSSAPPLTLLALLAIISLLLFLSSYPRYKYEVEKTAA 60

Query: 61  NFQLVLFLLPILVVFLMSSYSIGGLINFRFRQLTTGSTRR-----GASPWTIAILVPLIL 120
           N +L +  LPIL VF++ S S    + F+       +  +     G  PW + +++ L+L
Sbjct: 61  NLKLFMLFLPILFVFVLVSLSFVHRLLFKSSYSVRANQAKSLFGEGNFPWGVLLMLILLL 120

Query: 121 VLLYFRASFH 126
           +L+  ++ FH
Sbjct: 121 LLVSKQSYFH 130

The following BLAST results are available for this feature:

BLAST of Sed0019554 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7010871.1	1.3e-42	74.80	hypothetical protein SDJN02_27669, partial [Cucurbita argyrosperma subsp. argyro...	[more]
KGN61894.1	1.1e-33	67.19	hypothetical protein Csa_005908 [Cucumis sativus]	[more]
OAY52378.1	1.4e-33	58.91	hypothetical protein MANES_04G078400v8 [Manihot esculenta]	[more]
KAF3434655.1	2.4e-33	59.52	hypothetical protein FNV43_RR21740 [Rhamnella rubrinervis]	[more]
KDP27587.1	5.3e-33	56.69	hypothetical protein JCGZ_19592 [Jatropha curcas]	[more]

BLAST of Sed0019554 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Sed0019554 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LLH8	5.1e-34	67.19	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G263890 PE=4 SV=1	[more]
A0A2C9W0P5	6.7e-34	58.91	Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_04G078400 PE=4 SV=...	[more]
A0A067JUL1	2.6e-33	56.69	Uncharacterized protein OS=Jatropha curcas OX=180498 GN=JCGZ_19592 PE=4 SV=1	[more]
B9STD1	2.8e-32	54.62	Uncharacterized protein OS=Ricinus communis OX=3988 GN=RCOM_0660950 PE=4 SV=1	[more]
A0A2P5ED06	6.3e-32	54.33	Transmembrane protein OS=Trema orientale OX=63057 GN=TorRG33x02_208280 PE=4 SV=1	[more]

BLAST of Sed0019554 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G42146.1	1.5e-14	31.54	unknown protein; Has 98 Blast hits to 98 proteins in 12 species: Archae - 0; Bac...	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR33306	EXPRESSED PROTEIN-RELATED-RELATED	coord: 1..125
None	No IPR available	PANTHER	PTHR33306:SF21	EXPRESSED PROTEIN	coord: 1..125

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0019554.1	Sed0019554.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016020	membrane