Sed0019478 (gene) Chayote v1

Overview


Name	Sed0019478
Type	gene
Organism	Sechium edule (Chayote v1)
Description	Unknown protein
Location	LG13: 20913695 .. 20914003 (-)
RNA-Seq Expression	Sed0019478
Synteny	Sed0019478

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexonpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCAAAGGCCTAAAACCATTGGAGTTACTATAATAATTTCGTCCAATTCTTTTAACTTCTCTTCCATGAAGCTCTTTCATCGAATCCGTAAGATGCTCGTCCGATTCGTGTTCTCATTCCCCTCTCGAGTGTCGTCGAGAAAACGAACGAGCTATGACAAGTCGTTCGATCCACCGAAAACGTCGTGCAGCTCATATTACTCCTCTCATTCTCACTACGATGAGGCAATTGCCGACTGTATCGAGTTCTTTAACAAGTCATCGCAAGAGGGCGTTTTTGAAGCTTCGAGATCTAACTCGATGGTATGA

mRNA sequence

ATGCAAAGGCCTAAAACCATTGGAGTTACTATAATAATTTCGTCCAATTCTTTTAACTTCTCTTCCATGAAGCTCTTTCATCGAATCCGTAAGATGCTCGTCCGATTCGTGTTCTCATTCCCCTCTCGAGTGTCGTCGAGAAAACGAACGAGCTATGACAAGTCGTTCGATCCACCGAAAACGTCGTGCAGCTCATATTACTCCTCTCATTCTCACTACGATGAGGCAATTGCCGACTGTATCGAGTTCTTTAACAAGTCATCGCAAGAGGGCGTTTTTGAAGCTTCGAGATCTAACTCGATGGTATGA

Coding sequence (CDS)

ATGCAAAGGCCTAAAACCATTGGAGTTACTATAATAATTTCGTCCAATTCTTTTAACTTCTCTTCCATGAAGCTCTTTCATCGAATCCGTAAGATGCTCGTCCGATTCGTGTTCTCATTCCCCTCTCGAGTGTCGTCGAGAAAACGAACGAGCTATGACAAGTCGTTCGATCCACCGAAAACGTCGTGCAGCTCATATTACTCCTCTCATTCTCACTACGATGAGGCAATTGCCGACTGTATCGAGTTCTTTAACAAGTCATCGCAAGAGGGCGTTTTTGAAGCTTCGAGATCTAACTCGATGGTATGA

Protein sequence

MQRPKTIGVTIIISSNSFNFSSMKLFHRIRKMLVRFVFSFPSRVSSRKRTSYDKSFDPPKTSCSSYYSSHSHYDEAIADCIEFFNKSSQEGVFEASRSNSMV

Homology

[Close]

BLAST of Sed0019478 vs. NCBI nr
Match: KGN60030.1 (hypothetical protein Csa_001336 [Cucumis sativus])

HSP 1 Score: 145.6 bits (366), Expect = 2.4e-31
Identity = 81/102 (79.41%), Postives = 83/102 (81.37%), Query Frame = 0


Query: 1   MQRPKTIGVTIII------SSNSFNFSSMKLFHRIRKMLVRFVFSFPSRV--SSRKRTSY 60
           MQRPKT    I        SSNS NFSSMKLF RIRKMLVRFVFS PSRV  SSR+RTSY
Sbjct: 1   MQRPKTSAALITAVSSSSSSSNSLNFSSMKLFQRIRKMLVRFVFSIPSRVSSSSRRRTSY 60

Query: 61  DKSFDPPKTSCSSYYSSHSHYDEAIADCIEFFNKSSQEGVFE 95
           DKSFDPPKTSCSSYYSSHSHYDEAIADCIEFFNKSSQ+  FE
Sbjct: 61  DKSFDPPKTSCSSYYSSHSHYDEAIADCIEFFNKSSQDRGFE 102

[Close]

BLAST of Sed0019478 vs. NCBI nr
Match: KAG7024157.1 (hypothetical protein SDJN02_12970, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 125.2 bits (313), Expect = 3.3e-25
Identity = 61/68 (89.71%), Postives = 66/68 (97.06%), Query Frame = 0


Query: 23 MKLFHRIRKMLVRFVFSFPSRVSSRKRTSYDKSFDPPKTSCSSYYSSHSHYDEAIADCIE 82
          MKLFHRIRK+LVRFVFS PSRVSSR+RT+YDK +DPPKTSCSSYYSSHSHYDEAIADCIE
Sbjct: 1  MKLFHRIRKILVRFVFSLPSRVSSRQRTTYDKLYDPPKTSCSSYYSSHSHYDEAIADCIE 60

Query: 83 FFNKSSQE 91
          FFNKSSQ+
Sbjct: 61 FFNKSSQD 68

[Close]

BLAST of Sed0019478 vs. NCBI nr
Match: KDP36932.1 (hypothetical protein JCGZ_08223 [Jatropha curcas])

HSP 1 Score: 113.2 bits (282), Expect = 1.3e-21
Identity = 58/93 (62.37%), Postives = 74/93 (79.57%), Query Frame = 0


Query: 13  ISSNSFNFSSMKLFHRIRKMLVRFVFSFPS---RVSSRKRTSYDKSFDPPKTSCSSYYSS 72
           +SS+ F+FS+MK+F+R RK+L+R +FSFPS     SS K+ +  + FDPPKTSCSSYYSS
Sbjct: 50  VSSDKFSFSAMKIFNRFRKILMRLLFSFPSHHHHGSSSKQRNCSERFDPPKTSCSSYYSS 109

Query: 73  HSHYDEAIADCIEFFNKSSQEGVFEASRSNSMV 103
           HSHY EAIADCIEF NKSSQEGV +  +S+ +V
Sbjct: 110 HSHYSEAIADCIEFLNKSSQEGVLDGRKSDVLV 142

[Close]

BLAST of Sed0019478 vs. NCBI nr
Match: XP_021284958.1 (uncharacterized protein LOC110417084 [Herrania umbratica])

HSP 1 Score: 109.0 bits (271), Expect = 2.4e-20
Identity = 59/94 (62.77%), Postives = 72/94 (76.60%), Query Frame = 0


Query: 15  SNSFNFSSMKLFHRIRKMLVRFVFSFPSRVSS------RKRTSYDKSFDPPKTSCSSYYS 74
           S   NFS+MKLF+R RK+L+R +FS PS  SS       K+T+ D+ FDPPKTSCSSYYS
Sbjct: 33  SPKLNFSAMKLFNRFRKILMRLIFSLPSGGSSGTSSMAAKQTNCDR-FDPPKTSCSSYYS 92

Query: 75  SHSHYDEAIADCIEFFNKSSQEGVFEASRSNSMV 103
           SHSHY EAIADCIEFFNKSSQEG+ +  +S+ +V
Sbjct: 93  SHSHYTEAIADCIEFFNKSSQEGIMDGRKSDVLV 125

[Close]

BLAST of Sed0019478 vs. NCBI nr
Match: XP_024925739.1 (uncharacterized protein LOC107408298 [Ziziphus jujuba])

HSP 1 Score: 109.0 bits (271), Expect = 2.4e-20
Identity = 57/111 (51.35%), Postives = 76/111 (68.47%), Query Frame = 0


Query: 4   PKTIGVTIIISSNSFNFSSMKLFHRIRKMLVRFVFSFPSRVS------------SRKRTS 63
           P T G +   ++   N S+MKLF+R RK+L+R +FS P R S            + ++ +
Sbjct: 29  PTTTGTSTTTTTTKLNLSAMKLFNRFRKILMRLIFSLPPRGSCSSSSSSATPGMTPRQRN 88

Query: 64  YDKSFDPPKTSCSSYYSSHSHYDEAIADCIEFFNKSSQEGVFEASRSNSMV 103
            D+SFDPPKTSCSSYYSSHSHY+EAIADCIEFFNKSSQEG  +  +S+ ++
Sbjct: 89  CDRSFDPPKTSCSSYYSSHSHYNEAIADCIEFFNKSSQEGGLDGRKSSDIM 139

[Close]

BLAST of Sed0019478 vs. ExPASy TrEMBL
Match: A0A0A0LDK4 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G872120 PE=4 SV=1)

HSP 1 Score: 145.6 bits (366), Expect = 1.1e-31
Identity = 81/102 (79.41%), Postives = 83/102 (81.37%), Query Frame = 0


Query: 1   MQRPKTIGVTIII------SSNSFNFSSMKLFHRIRKMLVRFVFSFPSRV--SSRKRTSY 60
           MQRPKT    I        SSNS NFSSMKLF RIRKMLVRFVFS PSRV  SSR+RTSY
Sbjct: 1   MQRPKTSAALITAVSSSSSSSNSLNFSSMKLFQRIRKMLVRFVFSIPSRVSSSSRRRTSY 60

Query: 61  DKSFDPPKTSCSSYYSSHSHYDEAIADCIEFFNKSSQEGVFE 95
           DKSFDPPKTSCSSYYSSHSHYDEAIADCIEFFNKSSQ+  FE
Sbjct: 61  DKSFDPPKTSCSSYYSSHSHYDEAIADCIEFFNKSSQDRGFE 102

[Close]

BLAST of Sed0019478 vs. ExPASy TrEMBL
Match: A0A067KLC1 (Uncharacterized protein OS=Jatropha curcas OX=180498 GN=JCGZ_08223 PE=4 SV=1)

HSP 1 Score: 113.2 bits (282), Expect = 6.3e-22
Identity = 58/93 (62.37%), Postives = 74/93 (79.57%), Query Frame = 0


Query: 13  ISSNSFNFSSMKLFHRIRKMLVRFVFSFPS---RVSSRKRTSYDKSFDPPKTSCSSYYSS 72
           +SS+ F+FS+MK+F+R RK+L+R +FSFPS     SS K+ +  + FDPPKTSCSSYYSS
Sbjct: 50  VSSDKFSFSAMKIFNRFRKILMRLLFSFPSHHHHGSSSKQRNCSERFDPPKTSCSSYYSS 109

Query: 73  HSHYDEAIADCIEFFNKSSQEGVFEASRSNSMV 103
           HSHY EAIADCIEF NKSSQEGV +  +S+ +V
Sbjct: 110 HSHYSEAIADCIEFLNKSSQEGVLDGRKSDVLV 142

[Close]

BLAST of Sed0019478 vs. ExPASy TrEMBL
Match: A0A6J1ADC8 (uncharacterized protein LOC110417084 OS=Herrania umbratica OX=108875 GN=LOC110417084 PE=4 SV=1)

HSP 1 Score: 109.0 bits (271), Expect = 1.2e-20
Identity = 59/94 (62.77%), Postives = 72/94 (76.60%), Query Frame = 0


Query: 15  SNSFNFSSMKLFHRIRKMLVRFVFSFPSRVSS------RKRTSYDKSFDPPKTSCSSYYS 74
           S   NFS+MKLF+R RK+L+R +FS PS  SS       K+T+ D+ FDPPKTSCSSYYS
Sbjct: 33  SPKLNFSAMKLFNRFRKILMRLIFSLPSGGSSGTSSMAAKQTNCDR-FDPPKTSCSSYYS 92

Query: 75  SHSHYDEAIADCIEFFNKSSQEGVFEASRSNSMV 103
           SHSHY EAIADCIEFFNKSSQEG+ +  +S+ +V
Sbjct: 93  SHSHYTEAIADCIEFFNKSSQEGIMDGRKSDVLV 125

[Close]

BLAST of Sed0019478 vs. ExPASy TrEMBL
Match: A0A6P6FUZ0 (uncharacterized protein LOC107408298 OS=Ziziphus jujuba OX=326968 GN=LOC107408298 PE=4 SV=1)

HSP 1 Score: 109.0 bits (271), Expect = 1.2e-20
Identity = 57/111 (51.35%), Postives = 76/111 (68.47%), Query Frame = 0


Query: 4   PKTIGVTIIISSNSFNFSSMKLFHRIRKMLVRFVFSFPSRVS------------SRKRTS 63
           P T G +   ++   N S+MKLF+R RK+L+R +FS P R S            + ++ +
Sbjct: 29  PTTTGTSTTTTTTKLNLSAMKLFNRFRKILMRLIFSLPPRGSCSSSSSSATPGMTPRQRN 88

Query: 64  YDKSFDPPKTSCSSYYSSHSHYDEAIADCIEFFNKSSQEGVFEASRSNSMV 103
            D+SFDPPKTSCSSYYSSHSHY+EAIADCIEFFNKSSQEG  +  +S+ ++
Sbjct: 89  CDRSFDPPKTSCSSYYSSHSHYNEAIADCIEFFNKSSQEGGLDGRKSSDIM 139

[Close]

BLAST of Sed0019478 vs. ExPASy TrEMBL
Match: A0A061FD82 (Uncharacterized protein OS=Theobroma cacao OX=3641 GN=TCM_034216 PE=4 SV=1)

HSP 1 Score: 108.6 bits (270), Expect = 1.5e-20
Identity = 59/94 (62.77%), Postives = 72/94 (76.60%), Query Frame = 0


Query: 15  SNSFNFSSMKLFHRIRKMLVRFVFSFPSRVSS------RKRTSYDKSFDPPKTSCSSYYS 74
           S   NFS+MKLF+R RK+L+R +FS PS  SS       K+T+ D+ FDPPKTSCSSYYS
Sbjct: 60  SPKLNFSAMKLFNRFRKILMRLIFSLPSGGSSGTSSMAPKQTNCDR-FDPPKTSCSSYYS 119

Query: 75  SHSHYDEAIADCIEFFNKSSQEGVFEASRSNSMV 103
           SHSHY EAIADCIEFFNKSSQEG+ +  +S+ +V
Sbjct: 120 SHSHYTEAIADCIEFFNKSSQEGIMDGRKSDVLV 152

[Close]

BLAST of Sed0019478 vs. TAIR 10
Match: AT1G75717.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 70.9 bits (172), Expect = 6.9e-13
Identity = 42/73 (57.53%), Postives = 51/73 (69.86%), Query Frame = 0


Query: 23 MKLFHRIRKMLVRFVFSFPSRVSSRK------RTSYDKSFDPPKTSC-SSYYSSHSHYDE 82
          MKLFH++ K+L+R +  F    SSR+      R+   + F+PPK SC SSYYSSH HY E
Sbjct: 1  MKLFHKLGKILMRLI-DFTLHSSSRRQKKNNSRSGDGERFEPPKISCSSSYYSSHVHYSE 60

Query: 83 AIADCIEFFNKSS 89
          AIADCIEFFNKSS
Sbjct: 61 AIADCIEFFNKSS 72

The following BLAST results are available for this feature:

BLAST of Sed0019478 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN60030.1	2.4e-31	79.41	hypothetical protein Csa_001336 [Cucumis sativus]	[more]
KAG7024157.1	3.3e-25	89.71	hypothetical protein SDJN02_12970, partial [Cucurbita argyrosperma subsp. argyro...	[more]
KDP36932.1	1.3e-21	62.37	hypothetical protein JCGZ_08223 [Jatropha curcas]	[more]
XP_021284958.1	2.4e-20	62.77	uncharacterized protein LOC110417084 [Herrania umbratica]	[more]
XP_024925739.1	2.4e-20	51.35	uncharacterized protein LOC107408298 [Ziziphus jujuba]	[more]

BLAST of Sed0019478 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Sed0019478 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LDK4	1.1e-31	79.41	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G872120 PE=4 SV=1	[more]
A0A067KLC1	6.3e-22	62.37	Uncharacterized protein OS=Jatropha curcas OX=180498 GN=JCGZ_08223 PE=4 SV=1	[more]
A0A6J1ADC8	1.2e-20	62.77	uncharacterized protein LOC110417084 OS=Herrania umbratica OX=108875 GN=LOC11041...	[more]
A0A6P6FUZ0	1.2e-20	51.35	uncharacterized protein LOC107408298 OS=Ziziphus jujuba OX=326968 GN=LOC10740829...	[more]
A0A061FD82	1.5e-20	62.77	Uncharacterized protein OS=Theobroma cacao OX=3641 GN=TCM_034216 PE=4 SV=1	[more]

BLAST of Sed0019478 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G75717.1	6.9e-13	57.53	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR35111:SF5	F10A5.9	coord: 14..102
None	No IPR available	PANTHER	PTHR35111	F10A5.9-RELATED	coord: 14..102

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0019478.1	Sed0019478.1	mRNA