Sed0019465 (gene) Chayote v1

Overview
NameSed0019465
Typegene
OrganismSechium edule (Chayote v1)
Description50S ribosomal protein L18
LocationLG02: 48280567 .. 48285440 (-)
RNA-Seq ExpressionSed0019465
SyntenySed0019465
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
GGCATTTTTCCATGTAGGCTCCAAAGGTGAAGAAGAAGAAGAAGAAGGGAGAACCAGTAGAACAATGTCTTCCGCCATTGCTCCATTGTCGTTCCTCGCCAGTTCCTTTCTAAGCGTCTCTTCTCCACAGAGCCTTCGCAATCGTCCGGACCTCAATTTTCCGGCGACCACTTCAAGTTCCGTCCGGCGATCCCTCGTCATCGAAGCCAAGGCCTCCACCAGACGAGAGGACCGCGCAGCTCGCCATTCTCGCATCAGGAAGAAGGTAAATCGATCACACTCTCCATTTCTCCGTTTTAATTGAACTTTGCGCCTTCGTTCGTTCCCTCCCATTCGTGTTCGCGATCTTTGTTCTGTGAATTCGGCGTTTCTCTTGTTCTGTATTGTTCTTTGCCTCAAGAAATGGAGGCGGTTTCGATCTTTTTTTTTTCTTTCTGGAATGGATGTATCTAGTTTTCTTTTTGTCTAGGAATTACTCTGTGTTTGTCTATTCTAATTGCAAGTGCATATCAGTGTTTCAAAAATCGAAAGAGGCGTACGCCTCGAGGCGCGCCTTGAGGCGAGGCGGATGAAAAAAGCCTCGAGGCTTACGCCTTGAGGGTGAAAAATGAGGCTTACGCCTCTTGGAACAAAGGCGTACGCCTCGGAACTACCGCCTCAGAGGCTTAAAGGCGTAAGCCTCAACGATTTCATTTGGTAAAGCAAAAAAAAAAGCTTTAAAAAATGGAAAAACCTGAAACCTTGATAAGCTTCTACTGTATAAGCTTGAAGAAGAAGAGAAAAAAGATAAAGAAAAAGAGAGAAACAAAGGGAAGAAGATAAAGAAAACTTAATATAATAAGAAAAAAAAAAAAATGAATTGACAGATACATAGAAAACTGAAAAAGGACTAAAATGCTATTTAAATTAAATTTTTACTGACATTCACGTGGCTCAAGGCAATTAACTTTTTGGCATTCTTTAAATTTATGGTTTTTATAGCTTTTAAATTTGTTTTTATATCATAAGTTCAAATGGTTGGATACTCATAAATAATAGTATACTCTAAATTTTAACATTTTTACTATTTACCATATTATTATTATGATTTGATATTTTAAACTTTTTTTTATTATAATAATATTATGAGTTTTTTTTTCTTTTATGTTTTATTCTTACTATTGTAATCCATTTACTATTACTATAGCTTCTTTTATGTTCTTATTTTTATATTTTATTTGTTGACAATAATTTATTTTTTCTGTTTTTTATAACACTTTTATATTGAGTTTTTTTTTTGTTTTTATTTATTTATTTTTTAGTATTACATTTATATTTTATGAATTAAATATGTATTTTTTAATATAAAATGAGGCTTACGCCTCTTACCGCCTCGAGGCTTACGCCTCGCCTCTCCAGAAGAAAACGCCTCGAGGCCGCCTTAAGCCTTTTAAAACATTGGTGCATATTGCTGATTGGGAAATTGTAGTGAATGGTGAACTATTTGCATCTATAATCATCGACATCTCTTTTAATACTGCCGTAAGAAAGTATGCGACAATACTCAATAATACCATTATATTTACTTTTCTTTTTAGTAGCGTATTTATAATTATTTTCTAGATTTTACTAATATATTAAGTTAAGTTTTGCTTTGAGAGGTAATTTTTGTATTTCTCCCTGTCTTTTGAACAAGCCAATATTCATGGAAAGATGTAGCTTGTACAAAGCATACATAGGTAGCCGGAGGTTGGAGCCCTAGAACTCAAACCAAAGTAAGAAAGATATCCTGGGTATGAATTATTTTTTAGTTTCCAAAAGTGGGCTTAGCCTAGTGGTAATTGACATATATTTTCGATCGTGAGGCCTCAGATTTGAAACCCCCAATCCCCTGCTCGATTAGTAATTAATCATTTTTGGTTCGGGAAGGGATCATCGAAGTTTTGAAATGAATGCAAACACAATCTACTTTCATTAATTGACTTTTTAGATGATAAAAAATAGAAGATCTTGAAAACAATTCAAAATTCTGAAGACCTCTATGAGGGGGCCATTGAACAGCTGAAAAAAGCACGGGCCCGCTTATGAAAAGTCGAAATGGAAGCGGATCAGTTCCGAGTTAACGGATACTCTGAGGTAGAACGAGAAAAATTAAATTTGATTAATTCAACTTCTAAAAGTTTTGAAGCTAAAGATGCTAGTATTACAGGCACACACACTCCAGTTGTCAATATTGAGAAAAATATAATGAATGCTAAAGACACCATTCTACAACTAAATGCATGATTTCTTGAATCTTTTAATGCCCTTCTATTTCTTTAAACCAAATGCTTCAGAAGTGGATAGGACTCCGTTGACACTAAAAGAGAGTGACAAGGAAAGGCTTAATGGAGAAAATACTCAATATCGAATGAATTCATTTGGAAACATCACGAGTGTTGAAATATTTTCCTTGTGCGACTACCAGTTCCCCGATCATGTGTTAGGAAAGTAACTATATGGTTGTAAGGAAATTGATTGGTCATTTTGGATTGGATCTATAACCTCTTAGTTTCCAGTTGACCAGTAGTGGATAGAGTTTATACACACTTGTTGTCAAAGTGACATGGGTTTAATTAAACACTTGAAGAGAAGCAAGAGAATAAGAGTGAAGGAGATTGGTGAGCCAATAATTGTCATTGGGAGGTTATGATTTATTATTATTATCATTGATGTATAAAGTCTGGGAAGCATCTTCCTTTATCTTGTGGGTTTGGATTTCTAATCAGTTCAACTTTCTTGCTTGTTTACTTTCATCCTTAGTTGTTTGACTTTTATCATTATTTTGTATGCATCAATGGATCCCTTCAGAAACAGCACTGGGTTAACAATTGCTATCTTTATAATCATTGGCTCTTGCTGGTATAGATGCAGATTATAAAGTACAGTTCAGCTGTCAATTCATCTTCTTGTGTTTCAGGTTGAAGGAACATCAGAGAGGCCACGGTTGTCTGTATTCCGCTCCAACAAGCATCTCTACGTCCAGGTTATCGATGACTCCAAGATGCATACGCTTGCTGCAGTTTCAACGATGCAGAAATCAATCTCCGAGGGGTTAGACTACAGTGCTGGCCCAACCATTGTGAGTTTGCTAGAACCATGAATTAGTCCATTCATTGATTGATTTACTTCTGTTTTTGGGGTCTAATATTTTCCTTCAAAATCTGATAAGAACCAAACTAGGACAAATTGTATTACGATGTCAATGAAACCGAAGACCAGATAAACCTTGGTGAAAAGCAACTAGAACCTCCCTATCTTGGATAAACCAACCAAAGCGGCTAAGCCCTAAACTATTCTTATACATTTCAATATCTTTCTCAAATCCCCTCCCTCTTATTTATAATCATAATCCTCTAACTAACTCCCGGGTGTTTGTTTACCATATTTAGTGATGATTTAGCTTTAAGAGTTATATTGAGTAGTTATTTTGAGTAGTTAAAAATTGAGAGTTGTAGTCAAAAACTCGTTTGGATGTGGTTTTTGTGTAGATGAGTTAGAATCAAAACCTTGTTTGAATGTATATTTAAAATGAGTAGTTATTTTGAGTAGTTAAAAAGTAATGGTTAAAAATGAGTTATTTTGATTGCTTTGAAATAAATGATTAAAAATGAGTGGTTAGAAATGATTGAGTAGTTATAAATGAATGGTTAGAAATGAAAGTTATTTTCTAAAGTAAAAATGAGGAATAATTAGTAAAAACTTGTTTAGATGTAGATTTTTGAGGAGGAGTTAGTAAATACTCCAACTAAATCCTCCTTAAATATGACAAACAAACCTATCAGAAACATATTGGAAACATATCAGTAACATATTGGAAACATAGAATAATATTTAGCTTTCATCATCCCTTTACCCAACTTTGTTGCATTGATTTGATTTCTACCTAGATCTTCTAACCTCTTCAAATGAGAAAGCATCCATTCAAATTGGCCCACTAAATTAGTCAGATATTGTCAGTGATATTGTTTTTGAACTTGAATACCGAAATGAAATAACATAAGAAAATGAAAAAACAAAGCTACGGTAAGTGCCAACAAATCACCTTGAATTGGGTTAGTAGTCAAATGAGTTTAATCCATACTGATCACCTACGTGAAAATTAATTTCCCTACAAAATTATCTTGACAACCGAATTCAGTAGAATTCGACGATTGTCTTTTGAGAATCATGGTGTGCGTAAGCGAGTCCAGGCACTTACCAGCGACATCAGTGAGTTCAAGGATGTAGTTTATAGACGAAATAGACAATTTGCGAAGACGGAACCTTATAATATGTGGATGATATGGTGATTGCAGGAAGTGGCAAAGAAAGTCGGGGAAGCGATAGCAAAATCATGTGTGGAGAAAGGAATAACAAAGGTAGCATTCGACCGAGGTGGATATCCATACCATGGACGTGTAGAAGCTCTCGCTGATGCAGCTCGTGAACATGGCCTTCAGTTTTGATATATTCCATGTCTTCTGTTTTCTATGTCTATGTTGTAACAGTGCCATCAGATTGGCCTTATTTTTTCCGTTCATTAGACCGAGAGCTCAAATTAAATTAAGAGTCGATTTTTTTTTTTTTTTTTTTAGTACAGAGTCGGGAGAAGAGGGATTACAAATACCAATTCTAGGGATCGAATTCGTGACGGTGGAGTGAAAATAGATTAACACTAAATCAGAAAACCAATCACGTCACCAATTCATTTAGTAGAAAATATTTGTTGATTCATCTTTTCTTCCGAATTCAATGTCGCCAGTCTCTAGTTTTTCATTTTTGTAAATTGTGCTTTGTTTCTTTTATCGTTTCCCTACATGAGAAATGATAAAGTTGATGTACACTTAATCTTCGAAAATAAAAAATCAAATGAG

mRNA sequence

GGCATTTTTCCATGTAGGCTCCAAAGGTGAAGAAGAAGAAGAAGAAGGGAGAACCAGTAGAACAATGTCTTCCGCCATTGCTCCATTGTCGTTCCTCGCCAGTTCCTTTCTAAGCGTCTCTTCTCCACAGAGCCTTCGCAATCGTCCGGACCTCAATTTTCCGGCGACCACTTCAAGTTCCGTCCGGCGATCCCTCGTCATCGAAGCCAAGGCCTCCACCAGACGAGAGGACCGCGCAGCTCGCCATTCTCGCATCAGGAAGAAGGTTGAAGGAACATCAGAGAGGCCACGGTTGTCTGTATTCCGCTCCAACAAGCATCTCTACGTCCAGGTTATCGATGACTCCAAGATGCATACGCTTGCTGCAGTTTCAACGATGCAGAAATCAATCTCCGAGGGGTTAGACTACAGTGCTGGCCCAACCATTGAAGTGGCAAAGAAAGTCGGGGAAGCGATAGCAAAATCATGTGTGGAGAAAGGAATAACAAAGGTAGCATTCGACCGAGGTGGATATCCATACCATGGACGTGTAGAAGCTCTCGCTGATGCAGCTCGTGAACATGGCCTTCAGTTTTGATATATTCCATGTCTTCTGTTTTCTATGTCTATGTTGTAACAGTGCCATCAGATTGGCCTTATTTTTTCCGTTCATTAGACCGAGAGCTCAAATTAAATTAAGAGTCGATTTTTTTTTTTTTTTTTTTAGTACAGAGTCGGGAGAAGAGGGATTACAAATACCAATTCTAGGGATCGAATTCGTGACGGTGGAGTGAAAATAGATTAACACTAAATCAGAAAACCAATCACGTCACCAATTCATTTAGTAGAAAATATTTGTTGATTCATCTTTTCTTCCGAATTCAATGTCGCCAGTCTCTAGTTTTTCATTTTTGTAAATTGTGCTTTGTTTCTTTTATCGTTTCCCTACATGAGAAATGATAAAGTTGATGTACACTTAATCTTCGAAAATAAAAAATCAAATGAG

Coding sequence (CDS)

ATGTCTTCCGCCATTGCTCCATTGTCGTTCCTCGCCAGTTCCTTTCTAAGCGTCTCTTCTCCACAGAGCCTTCGCAATCGTCCGGACCTCAATTTTCCGGCGACCACTTCAAGTTCCGTCCGGCGATCCCTCGTCATCGAAGCCAAGGCCTCCACCAGACGAGAGGACCGCGCAGCTCGCCATTCTCGCATCAGGAAGAAGGTTGAAGGAACATCAGAGAGGCCACGGTTGTCTGTATTCCGCTCCAACAAGCATCTCTACGTCCAGGTTATCGATGACTCCAAGATGCATACGCTTGCTGCAGTTTCAACGATGCAGAAATCAATCTCCGAGGGGTTAGACTACAGTGCTGGCCCAACCATTGAAGTGGCAAAGAAAGTCGGGGAAGCGATAGCAAAATCATGTGTGGAGAAAGGAATAACAAAGGTAGCATTCGACCGAGGTGGATATCCATACCATGGACGTGTAGAAGCTCTCGCTGATGCAGCTCGTGAACATGGCCTTCAGTTTTGA

Protein sequence

MSSAIAPLSFLASSFLSVSSPQSLRNRPDLNFPATTSSSVRRSLVIEAKASTRREDRAARHSRIRKKVEGTSERPRLSVFRSNKHLYVQVIDDSKMHTLAAVSTMQKSISEGLDYSAGPTIEVAKKVGEAIAKSCVEKGITKVAFDRGGYPYHGRVEALADAAREHGLQF
Homology
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BLAST of Sed0019465 vs. NCBI nr
Match: XP_038885362.1 (50S ribosomal protein L18, chloroplastic-like [Benincasa hispida])

HSP 1 Score: 289.7 bits (740), Expect = 1.7e-74
Identity = 153/170 (90.00%), Postives = 163/170 (95.88%), Query Frame = 0 

Query: 1   MSSAIAPLSFLASSFLSVSSPQSLRNRPDLNFPATTSSSVRRSLVIEAKASTRREDRAAR 60
           M+SA APLSFL +SFLSVS  Q+LRNRP L+FPATTSSS R SLV+EA+A+TRREDR+AR
Sbjct: 1   MASATAPLSFLGTSFLSVSYSQNLRNRPHLHFPATTSSSGRHSLVVEAQATTRREDRSAR 60

Query: 61  HSRIRKKVEGTSERPRLSVFRSNKHLYVQVIDDSKMHTLAAVSTMQKSISEGLDYSAGPT 120
           HSRIRKKVEGT+ERPRLSVFRSNKHLYVQVIDDSKMHTLAAVSTMQKSISEGLDYSAGPT
Sbjct: 61  HSRIRKKVEGTTERPRLSVFRSNKHLYVQVIDDSKMHTLAAVSTMQKSISEGLDYSAGPT 120

Query: 121 IEVAKKVGEAIAKSCVEKGITKVAFDRGGYPYHGRVEALADAAREHGLQF 171
           IEVAKKVGEAIAKSC+EKGITKVAFDRGGYPYHGRVEALADAAREHGLQF
Sbjct: 121 IEVAKKVGEAIAKSCLEKGITKVAFDRGGYPYHGRVEALADAAREHGLQF 170

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BLAST of Sed0019465 vs. NCBI nr
Match: XP_008439021.1 (PREDICTED: 50S ribosomal protein L18, chloroplastic [Cucumis melo] >KAA0052138.1 50S ribosomal protein L18 [Cucumis melo var. makuwa] >TYK05105.1 50S ribosomal protein L18 [Cucumis melo var. makuwa])

HSP 1 Score: 285.4 bits (729), Expect = 3.2e-73
Identity = 151/170 (88.82%), Postives = 160/170 (94.12%), Query Frame = 0 

Query: 1   MSSAIAPLSFLASSFLSVSSPQSLRNRPDLNFPATTSSSVRRSLVIEAKASTRREDRAAR 60
           M+S  AP SFL +SFLSVS  Q++ NRP L+FPATTSSS R SLV+EAKA+TRREDRAAR
Sbjct: 1   MASTTAPCSFLGTSFLSVSYSQNILNRPHLHFPATTSSSGRHSLVVEAKATTRREDRAAR 60

Query: 61  HSRIRKKVEGTSERPRLSVFRSNKHLYVQVIDDSKMHTLAAVSTMQKSISEGLDYSAGPT 120
           HSRIRKKVEGT+ERPRLSVFRSNKHLYVQVIDDSKMHTLAAVSTMQKSISEGLDYSAGPT
Sbjct: 61  HSRIRKKVEGTTERPRLSVFRSNKHLYVQVIDDSKMHTLAAVSTMQKSISEGLDYSAGPT 120

Query: 121 IEVAKKVGEAIAKSCVEKGITKVAFDRGGYPYHGRVEALADAAREHGLQF 171
           IEVAKKVGEAIAKSC+EKGITKVAFDRGGYPYHGRVEALADAAREHGLQF
Sbjct: 121 IEVAKKVGEAIAKSCLEKGITKVAFDRGGYPYHGRVEALADAAREHGLQF 170

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BLAST of Sed0019465 vs. NCBI nr
Match: XP_022137866.1 (50S ribosomal protein L18, chloroplastic [Momordica charantia])

HSP 1 Score: 284.6 bits (727), Expect = 5.4e-73
Identity = 149/170 (87.65%), Postives = 157/170 (92.35%), Query Frame = 0 

Query: 1   MSSAIAPLSFLASSFLSVSSPQSLRNRPDLNFPATTSSSVRRSLVIEAKASTRREDRAAR 60
           MS+AI+P SFL SSFLSVS PQ LRNRP  NFP  TSSS R SL++EAKA+TRREDRAAR
Sbjct: 1   MSAAISPCSFLGSSFLSVSYPQKLRNRPQFNFPVPTSSSGRHSLLVEAKATTRREDRAAR 60

Query: 61  HSRIRKKVEGTSERPRLSVFRSNKHLYVQVIDDSKMHTLAAVSTMQKSISEGLDYSAGPT 120
           HSRIRKKVEGT ERPRLSV+RSNKHLYVQVIDDSKMHTLAA STMQKSISEGLDYS+GPT
Sbjct: 61  HSRIRKKVEGTPERPRLSVYRSNKHLYVQVIDDSKMHTLAAASTMQKSISEGLDYSSGPT 120

Query: 121 IEVAKKVGEAIAKSCVEKGITKVAFDRGGYPYHGRVEALADAAREHGLQF 171
           IEVAKKVGE IAKSC+EKGITKVAFDRGGYPYHGRVEALADAAREHGLQF
Sbjct: 121 IEVAKKVGEVIAKSCLEKGITKVAFDRGGYPYHGRVEALADAAREHGLQF 170

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BLAST of Sed0019465 vs. NCBI nr
Match: XP_022979945.1 (50S ribosomal protein L18, chloroplastic-like [Cucurbita maxima])

HSP 1 Score: 283.5 bits (724), Expect = 1.2e-72
Identity = 151/170 (88.82%), Postives = 159/170 (93.53%), Query Frame = 0 

Query: 1   MSSAIAPLSFLASSFLSVSSPQSLRNRPDLNFPATTSSSVRRSLVIEAKASTRREDRAAR 60
           MSSA APLSFL SSFL  SS Q+LRNR  LNFPATTSSS + SL ++AKA+TRREDR AR
Sbjct: 1   MSSATAPLSFLGSSFLGRSSSQNLRNRLQLNFPATTSSSGQHSLAVQAKATTRREDRQAR 60

Query: 61  HSRIRKKVEGTSERPRLSVFRSNKHLYVQVIDDSKMHTLAAVSTMQKSISEGLDYSAGPT 120
           HSRIRKKVEGTSERPRLSVFRSNKHLYVQVIDDSKMHTLAAVSTMQKSISEGLDY+AGPT
Sbjct: 61  HSRIRKKVEGTSERPRLSVFRSNKHLYVQVIDDSKMHTLAAVSTMQKSISEGLDYTAGPT 120

Query: 121 IEVAKKVGEAIAKSCVEKGITKVAFDRGGYPYHGRVEALADAAREHGLQF 171
           IEVAKKVGEAIAKSC+EKGI+KVAFDRGGYPYHGRVEALADAAREHGLQF
Sbjct: 121 IEVAKKVGEAIAKSCLEKGISKVAFDRGGYPYHGRVEALADAAREHGLQF 170

[Close]
BLAST of Sed0019465 vs. NCBI nr
Match: KAG7018533.1 (50S ribosomal protein L18, chloroplastic [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 283.5 bits (724), Expect = 1.2e-72
Identity = 151/170 (88.82%), Postives = 159/170 (93.53%), Query Frame = 0 

Query: 1   MSSAIAPLSFLASSFLSVSSPQSLRNRPDLNFPATTSSSVRRSLVIEAKASTRREDRAAR 60
           MSSA APLSFL SSFL  SS Q+LRNR  LNFPATTSSS + SL ++AKA+TRREDR AR
Sbjct: 1   MSSATAPLSFLGSSFLGGSSSQNLRNRLQLNFPATTSSSGQHSLAVQAKATTRREDRQAR 60

Query: 61  HSRIRKKVEGTSERPRLSVFRSNKHLYVQVIDDSKMHTLAAVSTMQKSISEGLDYSAGPT 120
           HSRIRKKVEGTSERPRLSVFRSNKHLYVQVIDDSKMHTLAAVSTMQKSISEGLDY+AGPT
Sbjct: 61  HSRIRKKVEGTSERPRLSVFRSNKHLYVQVIDDSKMHTLAAVSTMQKSISEGLDYTAGPT 120

Query: 121 IEVAKKVGEAIAKSCVEKGITKVAFDRGGYPYHGRVEALADAAREHGLQF 171
           IEVAKKVGEAIAKSC+EKGI+KVAFDRGGYPYHGRVEALADAAREHGLQF
Sbjct: 121 IEVAKKVGEAIAKSCLEKGISKVAFDRGGYPYHGRVEALADAAREHGLQF 170

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BLAST of Sed0019465 vs. ExPASy Swiss-Prot
Match: Q9SX68 (50S ribosomal protein L18, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RPL18 PE=2 SV=1)

HSP 1 Score: 213.0 bits (541), Expect = 2.6e-54
Identity = 111/147 (75.51%), Postives = 124/147 (84.35%), Query Frame = 0 

Query: 24  LRNRPDLNFPATTSSSVRRSLVIEAKASTRREDRAARHSRIRKKVEGTSERPRLSVFRSN 83
           L++R     P ++SS   RS+V+EAK  T  EDR ARHSRIRKKV GT+ERPRL VFRSN
Sbjct: 24  LQHRAVFLKPWSSSSLQSRSMVVEAKTKTSSEDRIARHSRIRKKVNGTTERPRLCVFRSN 83

Query: 84  KHLYVQVIDDSKMHTLAAVSTMQKSISEGLDYSAGPTIEVAKKVGEAIAKSCVEKGITKV 143
           KHLYVQVIDD+KMHTLA+ ST QK ISE  DY++GPTIEVAKKVGE IAKSC+EKGITKV
Sbjct: 84  KHLYVQVIDDTKMHTLASASTKQKPISEEFDYTSGPTIEVAKKVGEVIAKSCLEKGITKV 143

Query: 144 AFDRGGYPYHGRVEALADAAREHGLQF 171
           AFDRGGYPYHGR+EALA AAREHGLQF
Sbjct: 144 AFDRGGYPYHGRIEALAAAAREHGLQF 170

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BLAST of Sed0019465 vs. ExPASy Swiss-Prot
Match: P82195 (50S ribosomal protein L18, chloroplastic OS=Spinacia oleracea OX=3562 GN=RPL18 PE=1 SV=3)

HSP 1 Score: 212.6 bits (540), Expect = 3.4e-54
Identity = 121/171 (70.76%), Postives = 134/171 (78.36%), Query Frame = 0 

Query: 3   SAIAPLSFLASSFLSVSSP--QSLRNRPD-LNFPATTSSSVRRSLVIEAKASTRREDRAA 62
           +A   LSF  S+  S SS   Q L   P  +NF   T        +I+AKA TRREDR A
Sbjct: 2   AAATSLSFFHSTLASSSSSSVQQLSLPPKFVNFRPQTLP------LIQAKAHTRREDRTA 61

Query: 63  RHSRIRKKVEGTSERPRLSVFRSNKHLYVQVIDDSKMHTLAAVSTMQKSISEGLDYSAGP 122
           RH RIRKKVEGT ERPRL VFRSNKHLYVQVIDD+KMHTLAA STMQK+ISE +DYSAGP
Sbjct: 62  RHVRIRKKVEGTPERPRLCVFRSNKHLYVQVIDDTKMHTLAAASTMQKAISENIDYSAGP 121

Query: 123 TIEVAKKVGEAIAKSCVEKGITKVAFDRGGYPYHGRVEALADAAREHGLQF 171
           T+EVA+K+GE IAKSC+EKGITKVAFDRGGYPYHGRV+ALADAAREHGL F
Sbjct: 122 TVEVAQKIGEMIAKSCLEKGITKVAFDRGGYPYHGRVKALADAAREHGLVF 166

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BLAST of Sed0019465 vs. ExPASy Swiss-Prot
Match: Q8SAY0 (50S ribosomal protein L18, chloroplastic OS=Oryza sativa subsp. japonica OX=39947 GN=RPL18 PE=2 SV=1)

HSP 1 Score: 185.3 bits (469), Expect = 5.9e-46
Identity = 96/145 (66.21%), Postives = 118/145 (81.38%), Query Frame = 0 

Query: 28  PDLNFPATTSSSVRRSLVIEA--KASTRREDRAARHSRIRKKVEGTSERPRLSVFRSNKH 87
           P ++ P+ + +  R SLV+ A  K ST + DR ARH R+RKKV GT+ERPRLSVFRSNKH
Sbjct: 26  PAISAPSPSQARRRASLVVVAKVKVSTPQADRIARHVRLRKKVSGTTERPRLSVFRSNKH 85

Query: 88  LYVQVIDDSKMHTLAAVSTMQKSISEGLDYSAGPTIEVAKKVGEAIAKSCVEKGITKVAF 147
           LY QVIDD+K  TL + STM KS+S+ L+YSAGPT+EVA+K+GE IAKSC+EKGITKV F
Sbjct: 86  LYAQVIDDTKSCTLVSASTMHKSLSKDLEYSAGPTVEVAQKIGEVIAKSCLEKGITKVVF 145

Query: 148 DRGGYPYHGRVEALADAAREHGLQF 171
           DRGG+ YHGR++ALADAARE+GL F
Sbjct: 146 DRGGFLYHGRIKALADAARENGLDF 170

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BLAST of Sed0019465 vs. ExPASy Swiss-Prot
Match: Q5L3S3 (50S ribosomal protein L18 OS=Geobacillus kaustophilus (strain HTA426) OX=235909 GN=rplR PE=3 SV=1)

HSP 1 Score: 139.8 bits (351), Expect = 2.8e-32
Identity = 75/118 (63.56%), Postives = 89/118 (75.42%), Query Frame = 0 

Query: 53  RREDRAARHSRIRKKVEGTSERPRLSVFRSNKHLYVQVIDDSKMHTLAAVSTMQKSISEG 112
           R   R  RH+RIRKK+ GT+ERPRLSVFRSNKH+Y Q+IDD+K  T+ + ST+ K    G
Sbjct: 7   RNAVRKKRHARIRKKIFGTAERPRLSVFRSNKHIYAQIIDDTKSSTIVSASTLDKEF--G 66

Query: 113 LDYSAGPTIEVAKKVGEAIAKSCVEKGITKVAFDRGGYPYHGRVEALADAAREHGLQF 171
           LD  +   IE AKKVGE +AK  +EKGI KV FDRGGY YHGRV+ALADAARE GL+F
Sbjct: 67  LD--STNNIEAAKKVGELVAKRALEKGIKKVVFDRGGYLYHGRVKALADAAREAGLEF 120

[Close]
BLAST of Sed0019465 vs. ExPASy Swiss-Prot
Match: P09415 (50S ribosomal protein L18 OS=Geobacillus stearothermophilus OX=1422 GN=rplR PE=1 SV=1)

HSP 1 Score: 137.9 bits (346), Expect = 1.1e-31
Identity = 74/118 (62.71%), Postives = 89/118 (75.42%), Query Frame = 0 

Query: 53  RREDRAARHSRIRKKVEGTSERPRLSVFRSNKHLYVQVIDDSKMHTLAAVSTMQKSISEG 112
           R   R  RH+RIRKK+ GT+ERPRLSVFRSNKH+Y Q+IDD+K  T+ + ST+ K    G
Sbjct: 7   RNAVRKKRHARIRKKIFGTTERPRLSVFRSNKHIYAQIIDDTKSATIVSASTLDKEF--G 66

Query: 113 LDYSAGPTIEVAKKVGEAIAKSCVEKGITKVAFDRGGYPYHGRVEALADAAREHGLQF 171
           LD  +   IE AKKVGE +AK  +EKGI +V FDRGGY YHGRV+ALADAARE GL+F
Sbjct: 67  LD--STNNIEAAKKVGELVAKRALEKGIKQVVFDRGGYLYHGRVKALADAAREAGLEF 120

[Close]
BLAST of Sed0019465 vs. ExPASy TrEMBL
Match: A0A5A7UA63 (50S ribosomal protein L18 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1769G00090 PE=3 SV=1)

HSP 1 Score: 285.4 bits (729), Expect = 1.5e-73
Identity = 151/170 (88.82%), Postives = 160/170 (94.12%), Query Frame = 0 

Query: 1   MSSAIAPLSFLASSFLSVSSPQSLRNRPDLNFPATTSSSVRRSLVIEAKASTRREDRAAR 60
           M+S  AP SFL +SFLSVS  Q++ NRP L+FPATTSSS R SLV+EAKA+TRREDRAAR
Sbjct: 1   MASTTAPCSFLGTSFLSVSYSQNILNRPHLHFPATTSSSGRHSLVVEAKATTRREDRAAR 60

Query: 61  HSRIRKKVEGTSERPRLSVFRSNKHLYVQVIDDSKMHTLAAVSTMQKSISEGLDYSAGPT 120
           HSRIRKKVEGT+ERPRLSVFRSNKHLYVQVIDDSKMHTLAAVSTMQKSISEGLDYSAGPT
Sbjct: 61  HSRIRKKVEGTTERPRLSVFRSNKHLYVQVIDDSKMHTLAAVSTMQKSISEGLDYSAGPT 120

Query: 121 IEVAKKVGEAIAKSCVEKGITKVAFDRGGYPYHGRVEALADAAREHGLQF 171
           IEVAKKVGEAIAKSC+EKGITKVAFDRGGYPYHGRVEALADAAREHGLQF
Sbjct: 121 IEVAKKVGEAIAKSCLEKGITKVAFDRGGYPYHGRVEALADAAREHGLQF 170

[Close]
BLAST of Sed0019465 vs. ExPASy TrEMBL
Match: A0A1S3AXQ6 (50S ribosomal protein L18, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103483939 PE=3 SV=1)

HSP 1 Score: 285.4 bits (729), Expect = 1.5e-73
Identity = 151/170 (88.82%), Postives = 160/170 (94.12%), Query Frame = 0 

Query: 1   MSSAIAPLSFLASSFLSVSSPQSLRNRPDLNFPATTSSSVRRSLVIEAKASTRREDRAAR 60
           M+S  AP SFL +SFLSVS  Q++ NRP L+FPATTSSS R SLV+EAKA+TRREDRAAR
Sbjct: 1   MASTTAPCSFLGTSFLSVSYSQNILNRPHLHFPATTSSSGRHSLVVEAKATTRREDRAAR 60

Query: 61  HSRIRKKVEGTSERPRLSVFRSNKHLYVQVIDDSKMHTLAAVSTMQKSISEGLDYSAGPT 120
           HSRIRKKVEGT+ERPRLSVFRSNKHLYVQVIDDSKMHTLAAVSTMQKSISEGLDYSAGPT
Sbjct: 61  HSRIRKKVEGTTERPRLSVFRSNKHLYVQVIDDSKMHTLAAVSTMQKSISEGLDYSAGPT 120

Query: 121 IEVAKKVGEAIAKSCVEKGITKVAFDRGGYPYHGRVEALADAAREHGLQF 171
           IEVAKKVGEAIAKSC+EKGITKVAFDRGGYPYHGRVEALADAAREHGLQF
Sbjct: 121 IEVAKKVGEAIAKSCLEKGITKVAFDRGGYPYHGRVEALADAAREHGLQF 170

[Close]
BLAST of Sed0019465 vs. ExPASy TrEMBL
Match: A0A6J1C7Y4 (50S ribosomal protein L18, chloroplastic OS=Momordica charantia OX=3673 GN=LOC111009192 PE=3 SV=1)

HSP 1 Score: 284.6 bits (727), Expect = 2.6e-73
Identity = 149/170 (87.65%), Postives = 157/170 (92.35%), Query Frame = 0 

Query: 1   MSSAIAPLSFLASSFLSVSSPQSLRNRPDLNFPATTSSSVRRSLVIEAKASTRREDRAAR 60
           MS+AI+P SFL SSFLSVS PQ LRNRP  NFP  TSSS R SL++EAKA+TRREDRAAR
Sbjct: 1   MSAAISPCSFLGSSFLSVSYPQKLRNRPQFNFPVPTSSSGRHSLLVEAKATTRREDRAAR 60

Query: 61  HSRIRKKVEGTSERPRLSVFRSNKHLYVQVIDDSKMHTLAAVSTMQKSISEGLDYSAGPT 120
           HSRIRKKVEGT ERPRLSV+RSNKHLYVQVIDDSKMHTLAA STMQKSISEGLDYS+GPT
Sbjct: 61  HSRIRKKVEGTPERPRLSVYRSNKHLYVQVIDDSKMHTLAAASTMQKSISEGLDYSSGPT 120

Query: 121 IEVAKKVGEAIAKSCVEKGITKVAFDRGGYPYHGRVEALADAAREHGLQF 171
           IEVAKKVGE IAKSC+EKGITKVAFDRGGYPYHGRVEALADAAREHGLQF
Sbjct: 121 IEVAKKVGEVIAKSCLEKGITKVAFDRGGYPYHGRVEALADAAREHGLQF 170

[Close]
BLAST of Sed0019465 vs. ExPASy TrEMBL
Match: A0A6J1IUS1 (50S ribosomal protein L18, chloroplastic-like OS=Cucurbita maxima OX=3661 GN=LOC111479481 PE=3 SV=1)

HSP 1 Score: 283.5 bits (724), Expect = 5.9e-73
Identity = 151/170 (88.82%), Postives = 159/170 (93.53%), Query Frame = 0 

Query: 1   MSSAIAPLSFLASSFLSVSSPQSLRNRPDLNFPATTSSSVRRSLVIEAKASTRREDRAAR 60
           MSSA APLSFL SSFL  SS Q+LRNR  LNFPATTSSS + SL ++AKA+TRREDR AR
Sbjct: 1   MSSATAPLSFLGSSFLGRSSSQNLRNRLQLNFPATTSSSGQHSLAVQAKATTRREDRQAR 60

Query: 61  HSRIRKKVEGTSERPRLSVFRSNKHLYVQVIDDSKMHTLAAVSTMQKSISEGLDYSAGPT 120
           HSRIRKKVEGTSERPRLSVFRSNKHLYVQVIDDSKMHTLAAVSTMQKSISEGLDY+AGPT
Sbjct: 61  HSRIRKKVEGTSERPRLSVFRSNKHLYVQVIDDSKMHTLAAVSTMQKSISEGLDYTAGPT 120

Query: 121 IEVAKKVGEAIAKSCVEKGITKVAFDRGGYPYHGRVEALADAAREHGLQF 171
           IEVAKKVGEAIAKSC+EKGI+KVAFDRGGYPYHGRVEALADAAREHGLQF
Sbjct: 121 IEVAKKVGEAIAKSCLEKGISKVAFDRGGYPYHGRVEALADAAREHGLQF 170

[Close]
BLAST of Sed0019465 vs. ExPASy TrEMBL
Match: A0A0A0L9A4 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G171790 PE=3 SV=1)

HSP 1 Score: 280.0 bits (715), Expect = 6.5e-72
Identity = 147/170 (86.47%), Postives = 158/170 (92.94%), Query Frame = 0 

Query: 1   MSSAIAPLSFLASSFLSVSSPQSLRNRPDLNFPATTSSSVRRSLVIEAKASTRREDRAAR 60
           M+S  AP SFL +SFL+VS  Q++ NRP L+FP TTSSS R SLV+EAKA+TRREDR AR
Sbjct: 1   MASTTAPCSFLRTSFLTVSYSQNILNRPHLHFPPTTSSSGRHSLVVEAKATTRREDRTAR 60

Query: 61  HSRIRKKVEGTSERPRLSVFRSNKHLYVQVIDDSKMHTLAAVSTMQKSISEGLDYSAGPT 120
           HSRIRKKVEGT+ERPRLSVFRSNKHLYVQVIDDSKMHTLAAVSTMQKSISEGLDYSAGPT
Sbjct: 61  HSRIRKKVEGTTERPRLSVFRSNKHLYVQVIDDSKMHTLAAVSTMQKSISEGLDYSAGPT 120

Query: 121 IEVAKKVGEAIAKSCVEKGITKVAFDRGGYPYHGRVEALADAAREHGLQF 171
           IEVAKK+GEAIAKSC+EKGITKVAFDRGGYPYHGRVEALADAAREHGLQF
Sbjct: 121 IEVAKKIGEAIAKSCLEKGITKVAFDRGGYPYHGRVEALADAAREHGLQF 170

[Close]
BLAST of Sed0019465 vs. TAIR 10
Match: AT1G48350.1 (Ribosomal L18p/L5e family protein )

HSP 1 Score: 213.0 bits (541), Expect = 1.9e-55
Identity = 111/147 (75.51%), Postives = 124/147 (84.35%), Query Frame = 0 

Query: 24  LRNRPDLNFPATTSSSVRRSLVIEAKASTRREDRAARHSRIRKKVEGTSERPRLSVFRSN 83
           L++R     P ++SS   RS+V+EAK  T  EDR ARHSRIRKKV GT+ERPRL VFRSN
Sbjct: 24  LQHRAVFLKPWSSSSLQSRSMVVEAKTKTSSEDRIARHSRIRKKVNGTTERPRLCVFRSN 83

Query: 84  KHLYVQVIDDSKMHTLAAVSTMQKSISEGLDYSAGPTIEVAKKVGEAIAKSCVEKGITKV 143
           KHLYVQVIDD+KMHTLA+ ST QK ISE  DY++GPTIEVAKKVGE IAKSC+EKGITKV
Sbjct: 84  KHLYVQVIDDTKMHTLASASTKQKPISEEFDYTSGPTIEVAKKVGEVIAKSCLEKGITKV 143

Query: 144 AFDRGGYPYHGRVEALADAAREHGLQF 171
           AFDRGGYPYHGR+EALA AAREHGLQF
Sbjct: 144 AFDRGGYPYHGRIEALAAAAREHGLQF 170

[Close]
BLAST of Sed0019465 vs. TAIR 10
Match: AT1G14205.1 (Ribosomal L18p/L5e family protein )

HSP 1 Score: 82.0 bits (201), Expect = 5.0e-16
Identity = 62/165 (37.58%), Postives = 90/165 (54.55%), Query Frame = 0 

Query: 5   IAPLSFLASSFLSVSSPQSLRNRPDLNFP-ATTSSSVRRSLVIEAKASTRREDRAARHSR 64
           +A L+ L++    VS     R +P   FP   T+ SV +  VIEA+ +TR E    R+ R
Sbjct: 1   MAALTSLSTVQFRVSDILGTRLKPYPQFPIRITTMSVVKPFVIEARGNTRVESPKTRNRR 60

Query: 65  IRKKVEGTSERPRLSVFRSNKHLYVQVIDDSKMHTLAAVSTMQKSISEGLDYSAGPTIEV 124
            RKK  GT  +PRLSVF S+K LY  ++DD     L   ST+QKSI      +    IE 
Sbjct: 61  SRKKFTGTQTKPRLSVFCSDKQLYAMLVDDFNKKCLFYASTLQKSIRGDPPCT---VIEA 120

Query: 125 AKKVGEAIAKSCVEKGITKV-AFDRGGYPYHGRVEALADAAREHG 168
           AK+VGE + K+ ++  I ++ ++DR G     R++A   A  +HG
Sbjct: 121 AKRVGEELIKASIDLKINEISSYDRNGNKRGERMQAFEIAIAQHG 162

[Close]
BLAST of Sed0019465 vs. TAIR 10
Match: AT3G17626.1 (structural constituent of ribosome )

HSP 1 Score: 60.5 bits (145), Expect = 1.6e-09
Identity = 29/37 (78.38%), Postives = 30/37 (81.08%), Query Frame = 0 

Query: 118 GPTIEVAKKVGEAIAKSCVEKGITKVAFDRGGYPYHG 155
           G TIE+AKKVGE I KSCVE GITKVAFDR  Y YHG
Sbjct: 11  GSTIEMAKKVGEVIEKSCVENGITKVAFDRAIYTYHG 47

The following BLAST results are available for this feature:
BLAST of Sed0019465 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_038885362.11.7e-7490.0050S ribosomal protein L18, chloroplastic-like [Benincasa hispida][more]
XP_008439021.13.2e-7388.82PREDICTED: 50S ribosomal protein L18, chloroplastic [Cucumis melo] >KAA0052138.1... [more]
XP_022137866.15.4e-7387.6550S ribosomal protein L18, chloroplastic [Momordica charantia][more]
XP_022979945.11.2e-7288.8250S ribosomal protein L18, chloroplastic-like [Cucurbita maxima][more]
KAG7018533.11.2e-7288.8250S ribosomal protein L18, chloroplastic [Cucurbita argyrosperma subsp. argyrosp... [more]
BLAST of Sed0019465 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q9SX682.6e-5475.5150S ribosomal protein L18, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RPL1... [more]
P821953.4e-5470.7650S ribosomal protein L18, chloroplastic OS=Spinacia oleracea OX=3562 GN=RPL18 P... [more]
Q8SAY05.9e-4666.2150S ribosomal protein L18, chloroplastic OS=Oryza sativa subsp. japonica OX=3994... [more]
Q5L3S32.8e-3263.5650S ribosomal protein L18 OS=Geobacillus kaustophilus (strain HTA426) OX=235909 ... [more]
P094151.1e-3162.7150S ribosomal protein L18 OS=Geobacillus stearothermophilus OX=1422 GN=rplR PE=1... [more]
BLAST of Sed0019465 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5A7UA631.5e-7388.8250S ribosomal protein L18 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffo... [more]
A0A1S3AXQ61.5e-7388.8250S ribosomal protein L18, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103483939... [more]
A0A6J1C7Y42.6e-7387.6550S ribosomal protein L18, chloroplastic OS=Momordica charantia OX=3673 GN=LOC11... [more]
A0A6J1IUS15.9e-7388.8250S ribosomal protein L18, chloroplastic-like OS=Cucurbita maxima OX=3661 GN=LOC... [more]
A0A0A0L9A46.5e-7286.47Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G171790 PE=3 SV=1[more]
BLAST of Sed0019465 vs. TAIR 10
Match NameE-valueIdentityDescription
AT1G48350.11.9e-5575.51Ribosomal L18p/L5e family protein [more]
AT1G14205.15.0e-1637.58Ribosomal L18p/L5e family protein [more]
AT3G17626.11.6e-0978.38structural constituent of ribosome [more]
InterPro
Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR004389Ribosomal protein L18, bacterial-typeTIGRFAMTIGR00060TIGR00060coord: 54..170
e-value: 1.2E-42
score: 142.9
IPR004389Ribosomal protein L18, bacterial-typeHAMAPMF_01337_BRibosomal_L18_Bcoord: 52..170
score: 28.088135
NoneNo IPR availableGENE3D3.30.420.100coord: 52..170
e-value: 1.1E-46
score: 160.1
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 51..70
NoneNo IPR availablePANTHERPTHR12899:SF339S RIBOSOMAL PROTEIN L18, MITOCHONDRIALcoord: 17..170
NoneNo IPR availableCDDcd00432Ribosomal_L18_L5ecoord: 64..168
e-value: 4.51175E-44
score: 139.597
NoneNo IPR availableSUPERFAMILY53137Translational machinery componentscoord: 53..168
IPR005484Ribosomal protein L18PFAMPF00861Ribosomal_L18pcoord: 52..170
e-value: 3.5E-46
score: 156.3
IPR005484Ribosomal protein L18PANTHERPTHR1289939S RIBOSOMAL PROTEIN L18, MITOCHONDRIALcoord: 17..170

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Sed0019465.1Sed0019465.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006412 translation
cellular_component GO:0005737 cytoplasm
cellular_component GO:0005840 ribosome
molecular_function GO:0008097 5S rRNA binding
molecular_function GO:0003735 structural constituent of ribosome