Sed0019455 (gene) Chayote v1

Overview


Name	Sed0019455
Type	gene
Organism	Sechium edule (Chayote v1)
Description	RING-type domain-containing protein
Location	LG10: 28769847 .. 28772283 (-)
RNA-Seq Expression	Sed0019455
Synteny	Sed0019455

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TCCGTTTTCAAACGTACATTTTTCGCTTTTCCCTCAAACGCCTTTCGTCTTCGTCTTCGTCTTCGAATTTTCTTCTTCAATCGATCGGCCGATTTGTTCTTCTCCATTTACAGGTCGGTGTTTTCATTTTCCGATTCTTTTTCTTTTTTGTTTTTGTTTTGTAATTCTATTTCAATTCTGCGTTCTTTTTGTTGGATTCTCTTCGTCTCTGTTTGGGGATTTTTGAAACCCTAGGATAGGATTCCAGATTTGGTTGTATACCTCCCGATTGCATGATTCTGTTCTTAAGATCCTTGATTCTCTTTAGGTCATTCCGTTGAAGGAATAGTACCGATCTCGAAGTGTTTTTTTTTTGTGTTGAATTTCTTGGATTTCTTATCTCAGTTTTTTTGGTTTGATTTGATTGATTAGGTAGATTGGGTAGATATGGCGAGCGGGTTTGGGGAATCGACAAGTAGGCAACCCCAAAGCCCTTCCTGTTCCGATAACAATGGTGATGCTAGTAATTTCGAGTGCAATATTTGCTTGGATTTAGCTCAAGATCCTATTGTAACCCTGTGCGGTCATCTTTTTTGCTGGCCCTGTCTTTACAAGTGGCTGCAAATTCATTCCCATTCCCATGAATGCCCTGTTTGTAAAGCTATCATTGAAGACCAAAAATTGGTTCCCTTATATGGTAGGGGAAAGACATCCACGGACCCGAGATCCAAAACTATTCCCGGGATTAACATTCCTAACCGTCCTGCGGGGCAGAGACCTGAATCCGCAGGTCCTCCCTCCGAGCCCAATCCTTTTCCTCATAATGGATTTGGATTCATGGGAGGTCTTGGAGGGTTCGCCCCTATGGCGCCCGCCAGGTTTGGTAATTTCACATTGTCTGCTGCTTTTGGTGGTCTTGTCCCATCTTTATTCAACTTTCAGATGCATGGATATGCAAATCCAAGCATGTATGGTGCGGCTGCTAACTTTCCTTATGGATTTCCTAATATGTTTCATGGTAGCCACGGTCACGCCCATGGATACTATCACCATCTTCGTCAAGGTCAGCAGGATTACTATCTGAAGCGCCTGCTTTTGTTTATTTGTTTTTGTGTTCTTCTTGCTCTAGTCTGGCAATAGATGAAAGGGTCCTTTAGGGCTTAAATTGATTCAAGGTGTTTAGAGTATTCAATCTCTAGTTTAAGAATTTAAAACAAATACCTGATGGTACATTGTCTTGATATGTGCCATCTTTCGTCCTTATTTATTAGTCTCACTATATGTTGAAATGAGCATCAGACTTTTGTATGTTTAGGCATGGTGAACATCAGCTGACGTGCTTATGCAATTGTATTTGAAGGTTTCAATTTATTCACATATATGTATACCCCATTTACTTGCTGACCCACCAAATGCAATCACATGGCAGAGTGAAAAAAGCACATGATGTGTGATAGCTCATTCTCTCTGAGATGATTTATTTTCCTAAGTGGTTTCTTTGGTGCTTTTTTTTAAAAAATATCTGTGGGTGTTTAAGTTATGTTAAGTGCAATTTGATTATTCTTCTCAGATAGCTATCTAACCCTACAATATTTTGCTGCAAAAAAATTTATTGAAATTTGTGCTCGGCTATGGTTAATGGGTTATATATCCTTGTCTATTGTTTCAATAAACAATTCTAACTTTGTTATTTGCTTCATTTTCTCCAATTCTTCAATTTCATTTTGGTTTATGTTTGAACTTTGGTCTGGCTTATTAGAGAATATGGAATAGAATATGGTTTTCCACCTCAAAACTAATTGACAATGAGGGAAATAACCCATATCTCCCACTTTCCAATGTGGGATATTTGTGAGATCCTAACATGCCCCTTCAAGATGGTATTTCTTTTGGGCTCATCAATCTTGTATCGGATCTCAATTTCATTTTTGTTGGACCGATGCCTGTTTGGATTTTATGGACTCTGATACCATATTTGAGAATATGGGGTTTCACCTCAAAATCAATTGACAATGAGAGGAGTAACCCATATATCTTTTATATTGATGTTGGACTCGCCTACTTTTCAATGTGGAATATTTCTGAGATCTTAACATGACTCTATCTTCATGAAACATATCATTCGATTGAAAATAGCAGGAATATGATCAGGATCATCCCCTATGACTATGTTGGGAGCTAGTAGGTCGGTGACTTGGTGTTGTAGGTTTCAAGATTTATTTTTGGGTTTAATTTAAACAACAGAAAAGGTATTTTTATAAGCTGGTTGATACTTTACCATGTTTATCAGAAGAATGCAGAGATGAAGATAGGCCAAGTTAAGAATCTAAAAGTGACCCTTGAATCTTGTGGTGACGCTTTGGTTACTGAGTTGTTATTGATGTTTGATAATATTGAGGATCTAACATTGACGTACATTAAAAAGTGAGGAGACTTTTTGATATTTATGAGATAGGTG

mRNA sequence

TCCGTTTTCAAACGTACATTTTTCGCTTTTCCCTCAAACGCCTTTCGTCTTCGTCTTCGTCTTCGAATTTTCTTCTTCAATCGATCGGCCGATTTGTTCTTCTCCATTTACAGGTAGATTGGGTAGATATGGCGAGCGGGTTTGGGGAATCGACAAGTAGGCAACCCCAAAGCCCTTCCTGTTCCGATAACAATGGTGATGCTAGTAATTTCGAGTGCAATATTTGCTTGGATTTAGCTCAAGATCCTATTGTAACCCTGTGCGGTCATCTTTTTTGCTGGCCCTGTCTTTACAAGTGGCTGCAAATTCATTCCCATTCCCATGAATGCCCTGTTTGTAAAGCTATCATTGAAGACCAAAAATTGGTTCCCTTATATGGTAGGGGAAAGACATCCACGGACCCGAGATCCAAAACTATTCCCGGGATTAACATTCCTAACCGTCCTGCGGGGCAGAGACCTGAATCCGCAGGTCCTCCCTCCGAGCCCAATCCTTTTCCTCATAATGGATTTGGATTCATGGGAGGTCTTGGAGGGTTCGCCCCTATGGCGCCCGCCAGGTTTGGTAATTTCACATTGTCTGCTGCTTTTGGTGGTCTTGTCCCATCTTTATTCAACTTTCAGATGCATGGATATGCAAATCCAAGCATGTATGGTGCGGCTGCTAACTTTCCTTATGGATTTCCTAATATGTTTCATGGTAGCCACGGTCACGCCCATGGATACTATCACCATCTTCGTCAAGGTCAGCAGGATTACTATCTGAAGCGCCTGCTTTTGTTTATTTGTTTTTGTGTTCTTCTTGCTCTAGTCTGGCAATAGATGAAAGGGTCCTTTAGGGCTTAAATTGATTCAAGGTGTTTAGAGTATTCAATCTCTAGTTTAAGAATTTAAAACAAATACCTGATGGTACATTGTCTTGATATGTGCCATCTTTCGTCCTTATTTATTAGTCTCACTATATGTTGAAATGAGCATCAGACTTTTGTATGTTTAGGCATGGTGAACATCAGCTGACGTGCTTATGCAATTGTATTTGAAGGTTTCAATTTATTCACATATATGTATACCCCATTTACTTGCTGACCCACCAAATGCAATCACATGGCAGAGTGAAAAAAGCACATGATGTGTGATAGCTCATTCTCTCTGAGATGATTTATTTTCCTAAGTGGTTTCTTTGGTGCTTTTTTTTAAAAAATATCTGTGGGTGTTTAAGTTATGTTAAGTGCAATTTGATTATTCTTCTCAGATAGCTATCTAACCCTACAATATTTTGCTGCAAAAAAATTTATTGAAATTTGTGCTCGGCTATGGTTAATGGGTTATATATCCTTGTCTATTGTTTCAATAAACAATTCTAACTTTGTTATTTGCTTCATTTTCTCCAATTCTTCAATTTCATTTTGGTTTATGTTTGAACTTTGGTCTGGCTTATTAGAGAATATGGAATAGAATATGGTTTTCCACCTCAAAACTAATTGACAATGAGGGAAATAACCCATATCTCCCACTTTCCAATGTGGGATATTTGTGAGATCCTAACATGCCCCTTCAAGATGGTATTTCTTTTGGGCTCATCAATCTTGTATCGGATCTCAATTTCATTTTTGTTGGACCGATGCCTGTTTGGATTTTATGGACTCTGATACCATATTTGAGAATATGGGGTTTCACCTCAAAATCAATTGACAATGAGAGGAGTAACCCATATATCTTTTATATTGATGTTGGACTCGCCTACTTTTCAATGTGGAATATTTCTGAGATCTTAACATGACTCTATCTTCATGAAACATATCATTCGATTGAAAATAGCAGGAATATGATCAGGATCATCCCCTATGACTATGTTGGGAGCTAGTAGGTCGGTGACTTGGTGTTGTAGGTTTCAAGATTTATTTTTGGGTTTAATTTAAACAACAGAAAAGGTATTTTTATAAGCTGGTTGATACTTTACCATGTTTATCAGAAGAATGCAGAGATGAAGATAGGCCAAGTTAAGAATCTAAAAGTGACCCTTGAATCTTGTGGTGACGCTTTGGTTACTGAGTTGTTATTGATGTTTGATAATATTGAGGATCTAACATTGACGTACATTAAAAAGTGAGGAGACTTTTTGATATTTATGAGATAGGTG

Coding sequence (CDS)

ATGGCGAGCGGGTTTGGGGAATCGACAAGTAGGCAACCCCAAAGCCCTTCCTGTTCCGATAACAATGGTGATGCTAGTAATTTCGAGTGCAATATTTGCTTGGATTTAGCTCAAGATCCTATTGTAACCCTGTGCGGTCATCTTTTTTGCTGGCCCTGTCTTTACAAGTGGCTGCAAATTCATTCCCATTCCCATGAATGCCCTGTTTGTAAAGCTATCATTGAAGACCAAAAATTGGTTCCCTTATATGGTAGGGGAAAGACATCCACGGACCCGAGATCCAAAACTATTCCCGGGATTAACATTCCTAACCGTCCTGCGGGGCAGAGACCTGAATCCGCAGGTCCTCCCTCCGAGCCCAATCCTTTTCCTCATAATGGATTTGGATTCATGGGAGGTCTTGGAGGGTTCGCCCCTATGGCGCCCGCCAGGTTTGGTAATTTCACATTGTCTGCTGCTTTTGGTGGTCTTGTCCCATCTTTATTCAACTTTCAGATGCATGGATATGCAAATCCAAGCATGTATGGTGCGGCTGCTAACTTTCCTTATGGATTTCCTAATATGTTTCATGGTAGCCACGGTCACGCCCATGGATACTATCACCATCTTCGTCAAGGTCAGCAGGATTACTATCTGAAGCGCCTGCTTTTGTTTATTTGTTTTTGTGTTCTTCTTGCTCTAGTCTGGCAATAG

Protein sequence

MASGFGESTSRQPQSPSCSDNNGDASNFECNICLDLAQDPIVTLCGHLFCWPCLYKWLQIHSHSHECPVCKAIIEDQKLVPLYGRGKTSTDPRSKTIPGINIPNRPAGQRPESAGPPSEPNPFPHNGFGFMGGLGGFAPMAPARFGNFTLSAAFGGLVPSLFNFQMHGYANPSMYGAAANFPYGFPNMFHGSHGHAHGYYHHLRQGQQDYYLKRLLLFICFCVLLALVWQ

Homology

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BLAST of Sed0019455 vs. NCBI nr
Match: XP_038884023.1 (E3 ubiquitin ligase rnf-5 [Benincasa hispida])

HSP 1 Score: 458.4 bits (1178), Expect = 3.7e-125
Identity = 216/230 (93.91%), Postives = 221/230 (96.09%), Query Frame = 0


Query: 1   MASGFGESTSRQPQSPSCSDNNGDASNFECNICLDLAQDPIVTLCGHLFCWPCLYKWLQI 60
           MASGFGESTSRQPQSPSCSDNNGDASNFECNICLDLAQDPIVTLCGHLFCWPCLYKWL I
Sbjct: 1   MASGFGESTSRQPQSPSCSDNNGDASNFECNICLDLAQDPIVTLCGHLFCWPCLYKWLHI 60

Query: 61  HSHSHECPVCKAIIEDQKLVPLYGRGKTSTDPRSKTIPGINIPNRPAGQRPESAGPPSEP 120
           HSH  ECPVCKAIIE+QKLVPLYGRGKTSTDPRSK+IPGINIPNRPAGQRPE+AGPP EP
Sbjct: 61  HSHPQECPVCKAIIEEQKLVPLYGRGKTSTDPRSKSIPGINIPNRPAGQRPEAAGPPPEP 120

Query: 121 NPFPHNGFGFMGGLGGFAPMAPARFGNFTLSAAFGGLVPSLFNFQMHGYANPSMYGAAAN 180
           NPFPHNGFGFMGGLGGFAPMA  RFGNFTLSAAFGGLVPSLFNFQMHGYA+PSMYGA AN
Sbjct: 121 NPFPHNGFGFMGGLGGFAPMASTRFGNFTLSAAFGGLVPSLFNFQMHGYADPSMYGAGAN 180

Query: 181 FPYGFPNMFHGSHGHAHGYYHHLRQGQQDYYLKRLLLFICFCVLLALVWQ 231
           FPYGFPNMFHGSHGHAHGYYH LRQGQQDYYLKRLLLFI FCVLLAL+WQ
Sbjct: 181 FPYGFPNMFHGSHGHAHGYYHQLRQGQQDYYLKRLLLFIGFCVLLALIWQ 230

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BLAST of Sed0019455 vs. NCBI nr
Match: KAG6598412.1 (E3 ubiquitin ligase rnf-5, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 452.2 bits (1162), Expect = 2.7e-123
Identity = 213/230 (92.61%), Postives = 219/230 (95.22%), Query Frame = 0


Query: 1   MASGFGESTSRQPQSPSCSDNNGDASNFECNICLDLAQDPIVTLCGHLFCWPCLYKWLQI 60
           MASGFGESTSRQPQ PS SDNNGDASNFECNICLDLAQDPIVTLCGHLFCWPCLYKWL I
Sbjct: 17  MASGFGESTSRQPQGPSYSDNNGDASNFECNICLDLAQDPIVTLCGHLFCWPCLYKWLHI 76

Query: 61  HSHSHECPVCKAIIEDQKLVPLYGRGKTSTDPRSKTIPGINIPNRPAGQRPESAGPPSEP 120
           HSH  ECPVCKA+IE+QKLVPLYGRGKTSTDPRSK+IPGINIPNRPAGQRPE+AGPP EP
Sbjct: 77  HSHPQECPVCKALIEEQKLVPLYGRGKTSTDPRSKSIPGINIPNRPAGQRPEAAGPPPEP 136

Query: 121 NPFPHNGFGFMGGLGGFAPMAPARFGNFTLSAAFGGLVPSLFNFQMHGYANPSMYGAAAN 180
           NPFPHNGFGFMGGLGGFAPMA  RFGNFTLSAAFGGLVPSLFNFQMHGYA+PSMYGA AN
Sbjct: 137 NPFPHNGFGFMGGLGGFAPMASTRFGNFTLSAAFGGLVPSLFNFQMHGYADPSMYGAGAN 196

Query: 181 FPYGFPNMFHGSHGHAHGYYHHLRQGQQDYYLKRLLLFICFCVLLALVWQ 231
            PYGFPNMFHGSHGHAHGYYHHLRQGQQDYYLKRLLLFI FCVLLAL+WQ
Sbjct: 197 VPYGFPNMFHGSHGHAHGYYHHLRQGQQDYYLKRLLLFIGFCVLLALIWQ 246

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BLAST of Sed0019455 vs. NCBI nr
Match: XP_023547002.1 (E3 ubiquitin-protein ligase RNF185-like [Cucurbita pepo subsp. pepo] >XP_023547003.1 E3 ubiquitin-protein ligase RNF185-like [Cucurbita pepo subsp. pepo] >KAG7029364.1 RING finger protein 5, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 452.2 bits (1162), Expect = 2.7e-123
Identity = 213/230 (92.61%), Postives = 219/230 (95.22%), Query Frame = 0


Query: 1   MASGFGESTSRQPQSPSCSDNNGDASNFECNICLDLAQDPIVTLCGHLFCWPCLYKWLQI 60
           MASGFGESTSRQPQ PS SDNNGDASNFECNICLDLAQDPIVTLCGHLFCWPCLYKWL I
Sbjct: 1   MASGFGESTSRQPQGPSYSDNNGDASNFECNICLDLAQDPIVTLCGHLFCWPCLYKWLHI 60

Query: 61  HSHSHECPVCKAIIEDQKLVPLYGRGKTSTDPRSKTIPGINIPNRPAGQRPESAGPPSEP 120
           HSH  ECPVCKA+IE+QKLVPLYGRGKTSTDPRSK+IPGINIPNRPAGQRPE+AGPP EP
Sbjct: 61  HSHPQECPVCKALIEEQKLVPLYGRGKTSTDPRSKSIPGINIPNRPAGQRPEAAGPPPEP 120

Query: 121 NPFPHNGFGFMGGLGGFAPMAPARFGNFTLSAAFGGLVPSLFNFQMHGYANPSMYGAAAN 180
           NPFPHNGFGFMGGLGGFAPMA  RFGNFTLSAAFGGLVPSLFNFQMHGYA+PSMYGA AN
Sbjct: 121 NPFPHNGFGFMGGLGGFAPMASTRFGNFTLSAAFGGLVPSLFNFQMHGYADPSMYGAGAN 180

Query: 181 FPYGFPNMFHGSHGHAHGYYHHLRQGQQDYYLKRLLLFICFCVLLALVWQ 231
            PYGFPNMFHGSHGHAHGYYHHLRQGQQDYYLKRLLLFI FCVLLAL+WQ
Sbjct: 181 VPYGFPNMFHGSHGHAHGYYHHLRQGQQDYYLKRLLLFIGFCVLLALIWQ 230

[Close]

BLAST of Sed0019455 vs. NCBI nr
Match: XP_022962412.1 (E3 ubiquitin-protein ligase RNF185-like [Cucurbita moschata] >XP_022962413.1 E3 ubiquitin-protein ligase RNF185-like [Cucurbita moschata])

HSP 1 Score: 451.1 bits (1159), Expect = 5.9e-123
Identity = 212/230 (92.17%), Postives = 219/230 (95.22%), Query Frame = 0


Query: 1   MASGFGESTSRQPQSPSCSDNNGDASNFECNICLDLAQDPIVTLCGHLFCWPCLYKWLQI 60
           MASGFGESTSRQPQ PS SDNNGDASNFECNICLDLAQDPIVTLCGHLFCWPCLYKWL I
Sbjct: 1   MASGFGESTSRQPQGPSYSDNNGDASNFECNICLDLAQDPIVTLCGHLFCWPCLYKWLHI 60

Query: 61  HSHSHECPVCKAIIEDQKLVPLYGRGKTSTDPRSKTIPGINIPNRPAGQRPESAGPPSEP 120
           HSH  ECPVCKA+IE+QKLVPLYGRGKTSTDPRSK+IPGINIPNRP+GQRPE+AGPP EP
Sbjct: 61  HSHPQECPVCKALIEEQKLVPLYGRGKTSTDPRSKSIPGINIPNRPSGQRPEAAGPPPEP 120

Query: 121 NPFPHNGFGFMGGLGGFAPMAPARFGNFTLSAAFGGLVPSLFNFQMHGYANPSMYGAAAN 180
           NPFPHNGFGFMGGLGGFAPMA  RFGNFTLSAAFGGLVPSLFNFQMHGYA+PSMYGA AN
Sbjct: 121 NPFPHNGFGFMGGLGGFAPMASTRFGNFTLSAAFGGLVPSLFNFQMHGYADPSMYGAGAN 180

Query: 181 FPYGFPNMFHGSHGHAHGYYHHLRQGQQDYYLKRLLLFICFCVLLALVWQ 231
            PYGFPNMFHGSHGHAHGYYHHLRQGQQDYYLKRLLLFI FCVLLAL+WQ
Sbjct: 181 VPYGFPNMFHGSHGHAHGYYHHLRQGQQDYYLKRLLLFIGFCVLLALIWQ 230

[Close]

BLAST of Sed0019455 vs. NCBI nr
Match: XP_022144378.1 (E3 ubiquitin-protein ligase RNF185 [Momordica charantia])

HSP 1 Score: 450.3 bits (1157), Expect = 1.0e-122
Identity = 212/230 (92.17%), Postives = 218/230 (94.78%), Query Frame = 0


Query: 1   MASGFGESTSRQPQSPSCSDNNGDASNFECNICLDLAQDPIVTLCGHLFCWPCLYKWLQI 60
           MASGFGESTSRQPQSPSCSDNN DASNFECNICLDLAQDPIVTLCGHLFCWPCLYKWL I
Sbjct: 1   MASGFGESTSRQPQSPSCSDNNSDASNFECNICLDLAQDPIVTLCGHLFCWPCLYKWLHI 60

Query: 61  HSHSHECPVCKAIIEDQKLVPLYGRGKTSTDPRSKTIPGINIPNRPAGQRPESAGPPSEP 120
           HSH  ECPVCKAIIE+QKLVPLYGRGKTSTDPRSK+IPGINIPNRPAGQRPE+AGPP EP
Sbjct: 61  HSHPQECPVCKAIIEEQKLVPLYGRGKTSTDPRSKSIPGINIPNRPAGQRPEAAGPPPEP 120

Query: 121 NPFPHNGFGFMGGLGGFAPMAPARFGNFTLSAAFGGLVPSLFNFQMHGYANPSMYGAAAN 180
           N FPHNGFGFMGGLGGFAPMA  RFGNFTLSAAFGGLVPSLFNFQMHGYA+PSMYGA A 
Sbjct: 121 NHFPHNGFGFMGGLGGFAPMASTRFGNFTLSAAFGGLVPSLFNFQMHGYADPSMYGAGAG 180

Query: 181 FPYGFPNMFHGSHGHAHGYYHHLRQGQQDYYLKRLLLFICFCVLLALVWQ 231
           FPYGFPNMFHGSHGHAHGYYHHLRQGQQDYYLKRLL+ I FCVLLAL+WQ
Sbjct: 181 FPYGFPNMFHGSHGHAHGYYHHLRQGQQDYYLKRLLMLIGFCVLLALIWQ 230

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BLAST of Sed0019455 vs. ExPASy Swiss-Prot
Match: Q09463 (E3 ubiquitin ligase rnf-5 OS=Caenorhabditis elegans OX=6239 GN=rnf-5 PE=1 SV=1)

HSP 1 Score: 130.6 bits (327), Expect = 2.3e-29
Identity = 91/245 (37.14%), Postives = 126/245 (51.43%), Query Frame = 0


Query: 9   TSRQPQSPSCSDNNGDASNFECNICLDLAQDPIVTLCGHLFCWPCLYKWLQIHSHSHECP 68
           T    + P+ S N  +++ FECNICLD A+D +V+LCGHLFCWPCL +WL    ++  CP
Sbjct: 5   TKAPSEEPTSSSNKDESARFECNICLDAAKDAVVSLCGHLFCWPCLSQWLDTRPNNQVCP 64

Query: 69  VCKAIIEDQKLVPLYGRGKTSTDPRSKTIPGINIPNRPAGQRPESAGPPSEPNPFPHNGF 128
           VCK+ I+  K+VP+YGRG  S+DPR K      +P RP GQR E   PP  P  F    +
Sbjct: 65  VCKSAIDGNKVVPIYGRGGDSSDPRKK------VPPRPKGQRSE---PP--PQSFAGFNW 124

Query: 129 GFMGG-LGGFAPMAPARFGNFTLSAAFGGLVPSLF-----------NFQMHGYANPSMYG 188
           G  GG +GG  P     FG  T++    GL P +F           +F    + N +   
Sbjct: 125 GGDGGMMGGGGPNVHFSFGIGTVN----GLFPLMFMLPFIQGIFPLSFVASFFGNGNQGA 184

Query: 189 AAANFPYGFPNMFH-GSHGHAHGYYH-----------HLRQGQQDYYLKRLLLFICFCVL 230
           AAA    G  N  + G+H H HG+ H             R  Q++ YL  +  +I F +L
Sbjct: 185 AAAGGGNGGGNDGNDGTHAHTHGHTHGPRGHGESAAPGSRMAQEEEYLSNIFKYIGFFML 234

[Close]

BLAST of Sed0019455 vs. ExPASy Swiss-Prot
Match: Q5ZIR9 (E3 ubiquitin-protein ligase RNF185 OS=Gallus gallus OX=9031 GN=RNF185 PE=2 SV=1)

HSP 1 Score: 120.6 bits (301), Expect = 2.4e-26
Identity = 66/130 (50.77%), Postives = 77/130 (59.23%), Query Frame = 0


Query: 9   TSRQPQSPSCSDNNGDASNFECNICLDLAQDPIVTLCGHLFCWPCLYKWLQIHSHSHECP 68
           TS    S    DN    + FECNICLD A+D +++LCGHLFCWPCL++WL+   +   CP
Sbjct: 20  TSGSSSSNGAGDNTNQDNTFECNICLDTAKDAVISLCGHLFCWPCLHQWLETRPNRQVCP 79

Query: 69  VCKAIIEDQKLVPLYGRGKT-STDPRSKTIPGINIPNRPAGQRPESAGPPSEPNPFPHNG 128
           VCKA I   K++PLYGRG T   DPR KT      P RP GQRPE    P     F   G
Sbjct: 80  VCKAGISRDKVIPLYGRGSTGQQDPREKT------PPRPQGQRPE----PENRGGF--QG 135

Query: 129 FGFMGGLGGF 138
           FGF  G GGF
Sbjct: 140 FGF--GDGGF 135

[Close]

BLAST of Sed0019455 vs. ExPASy Swiss-Prot
Match: Q96GF1 (E3 ubiquitin-protein ligase RNF185 OS=Homo sapiens OX=9606 GN=RNF185 PE=1 SV=1)

HSP 1 Score: 118.6 bits (296), Expect = 9.1e-26
Identity = 71/143 (49.65%), Postives = 83/143 (58.04%), Query Frame = 0


Query: 6   GESTSRQPQS-----PSCSDN-----NGDASNFECNICLDLAQDPIVTLCGHLFCWPCLY 65
           G S S  P++     PS S N      G  S FECNICLD A+D +++LCGHLFCWPCL+
Sbjct: 5   GPSASASPENSSAGGPSGSSNGAGESGGQDSTFECNICLDTAKDAVISLCGHLFCWPCLH 64

Query: 66  KWLQIHSHSHECPVCKAIIEDQKLVPLYGRGKT-STDPRSKTIPGINIPNRPAGQRPESA 125
           +WL+   +   CPVCKA I   K++PLYGRG T   DPR KT      P RP GQRPE  
Sbjct: 65  QWLETRPNRQVCPVCKAGISRDKVIPLYGRGSTGQQDPREKT------PPRPQGQRPE-- 124

Query: 126 GPPSEPNPFPHNGFGFMGGLGGF 138
             P     F   GFGF  G GGF
Sbjct: 125 --PENRGGF--QGFGF--GDGGF 133

[Close]

BLAST of Sed0019455 vs. ExPASy Swiss-Prot
Match: Q5RFK9 (E3 ubiquitin-protein ligase RNF185 OS=Pongo abelii OX=9601 GN=RNF185 PE=2 SV=1)

HSP 1 Score: 118.6 bits (296), Expect = 9.1e-26
Identity = 71/143 (49.65%), Postives = 83/143 (58.04%), Query Frame = 0


Query: 6   GESTSRQPQS-----PSCSDN-----NGDASNFECNICLDLAQDPIVTLCGHLFCWPCLY 65
           G S S  P++     PS S N      G  S FECNICLD A+D +++LCGHLFCWPCL+
Sbjct: 5   GPSASSSPENSSAGGPSGSSNGAGESGGQDSTFECNICLDTAKDAVISLCGHLFCWPCLH 64

Query: 66  KWLQIHSHSHECPVCKAIIEDQKLVPLYGRGKT-STDPRSKTIPGINIPNRPAGQRPESA 125
           +WL+   +   CPVCKA I   K++PLYGRG T   DPR KT      P RP GQRPE  
Sbjct: 65  QWLETRPNRQVCPVCKAGISRDKVIPLYGRGSTGQQDPREKT------PPRPQGQRPE-- 124

Query: 126 GPPSEPNPFPHNGFGFMGGLGGF 138
             P     F   GFGF  G GGF
Sbjct: 125 --PENRGGF--QGFGF--GDGGF 133

[Close]

BLAST of Sed0019455 vs. ExPASy Swiss-Prot
Match: Q91YT2 (E3 ubiquitin-protein ligase RNF185 OS=Mus musculus OX=10090 GN=Rnf185 PE=2 SV=1)

HSP 1 Score: 118.2 bits (295), Expect = 1.2e-25
Identity = 64/124 (51.61%), Postives = 76/124 (61.29%), Query Frame = 0


Query: 15  SPSCSDNNGDASNFECNICLDLAQDPIVTLCGHLFCWPCLYKWLQIHSHSHECPVCKAII 74
           S    ++ G  S FECNICLD A+D +++LCGHLFCWPCL++WL+   +   CPVCKA I
Sbjct: 24  SNGTGESGGQDSTFECNICLDTAKDAVISLCGHLFCWPCLHQWLETRPNRQVCPVCKAGI 83

Query: 75  EDQKLVPLYGRGKT-STDPRSKTIPGINIPNRPAGQRPESAGPPSEPNPFPHNGFGFMGG 134
              K++PLYGRG T   DPR KT      P RP GQRPE    P     F   GFGF  G
Sbjct: 84  SRDKVIPLYGRGSTGQQDPREKT------PPRPQGQRPE----PENRGGF--QGFGF--G 133

Query: 135 LGGF 138
            GGF
Sbjct: 144 DGGF 133

[Close]

BLAST of Sed0019455 vs. ExPASy TrEMBL
Match: A0A6J1HCN0 (E3 ubiquitin-protein ligase RNF185-like OS=Cucurbita moschata OX=3662 GN=LOC111462860 PE=4 SV=1)

HSP 1 Score: 451.1 bits (1159), Expect = 2.9e-123
Identity = 212/230 (92.17%), Postives = 219/230 (95.22%), Query Frame = 0


Query: 1   MASGFGESTSRQPQSPSCSDNNGDASNFECNICLDLAQDPIVTLCGHLFCWPCLYKWLQI 60
           MASGFGESTSRQPQ PS SDNNGDASNFECNICLDLAQDPIVTLCGHLFCWPCLYKWL I
Sbjct: 1   MASGFGESTSRQPQGPSYSDNNGDASNFECNICLDLAQDPIVTLCGHLFCWPCLYKWLHI 60

Query: 61  HSHSHECPVCKAIIEDQKLVPLYGRGKTSTDPRSKTIPGINIPNRPAGQRPESAGPPSEP 120
           HSH  ECPVCKA+IE+QKLVPLYGRGKTSTDPRSK+IPGINIPNRP+GQRPE+AGPP EP
Sbjct: 61  HSHPQECPVCKALIEEQKLVPLYGRGKTSTDPRSKSIPGINIPNRPSGQRPEAAGPPPEP 120

Query: 121 NPFPHNGFGFMGGLGGFAPMAPARFGNFTLSAAFGGLVPSLFNFQMHGYANPSMYGAAAN 180
           NPFPHNGFGFMGGLGGFAPMA  RFGNFTLSAAFGGLVPSLFNFQMHGYA+PSMYGA AN
Sbjct: 121 NPFPHNGFGFMGGLGGFAPMASTRFGNFTLSAAFGGLVPSLFNFQMHGYADPSMYGAGAN 180

Query: 181 FPYGFPNMFHGSHGHAHGYYHHLRQGQQDYYLKRLLLFICFCVLLALVWQ 231
            PYGFPNMFHGSHGHAHGYYHHLRQGQQDYYLKRLLLFI FCVLLAL+WQ
Sbjct: 181 VPYGFPNMFHGSHGHAHGYYHHLRQGQQDYYLKRLLLFIGFCVLLALIWQ 230

[Close]

BLAST of Sed0019455 vs. ExPASy TrEMBL
Match: A0A6J1CT42 (E3 ubiquitin-protein ligase RNF185 OS=Momordica charantia OX=3673 GN=LOC111014071 PE=4 SV=1)

HSP 1 Score: 450.3 bits (1157), Expect = 4.9e-123
Identity = 212/230 (92.17%), Postives = 218/230 (94.78%), Query Frame = 0


Query: 1   MASGFGESTSRQPQSPSCSDNNGDASNFECNICLDLAQDPIVTLCGHLFCWPCLYKWLQI 60
           MASGFGESTSRQPQSPSCSDNN DASNFECNICLDLAQDPIVTLCGHLFCWPCLYKWL I
Sbjct: 1   MASGFGESTSRQPQSPSCSDNNSDASNFECNICLDLAQDPIVTLCGHLFCWPCLYKWLHI 60

Query: 61  HSHSHECPVCKAIIEDQKLVPLYGRGKTSTDPRSKTIPGINIPNRPAGQRPESAGPPSEP 120
           HSH  ECPVCKAIIE+QKLVPLYGRGKTSTDPRSK+IPGINIPNRPAGQRPE+AGPP EP
Sbjct: 61  HSHPQECPVCKAIIEEQKLVPLYGRGKTSTDPRSKSIPGINIPNRPAGQRPEAAGPPPEP 120

Query: 121 NPFPHNGFGFMGGLGGFAPMAPARFGNFTLSAAFGGLVPSLFNFQMHGYANPSMYGAAAN 180
           N FPHNGFGFMGGLGGFAPMA  RFGNFTLSAAFGGLVPSLFNFQMHGYA+PSMYGA A 
Sbjct: 121 NHFPHNGFGFMGGLGGFAPMASTRFGNFTLSAAFGGLVPSLFNFQMHGYADPSMYGAGAG 180

Query: 181 FPYGFPNMFHGSHGHAHGYYHHLRQGQQDYYLKRLLLFICFCVLLALVWQ 231
           FPYGFPNMFHGSHGHAHGYYHHLRQGQQDYYLKRLL+ I FCVLLAL+WQ
Sbjct: 181 FPYGFPNMFHGSHGHAHGYYHHLRQGQQDYYLKRLLMLIGFCVLLALIWQ 230

[Close]

BLAST of Sed0019455 vs. ExPASy TrEMBL
Match: A0A6J1GGW7 (RING finger protein 5 OS=Cucurbita moschata OX=3662 GN=LOC111454080 PE=4 SV=1)

HSP 1 Score: 449.5 bits (1155), Expect = 8.3e-123
Identity = 213/234 (91.03%), Postives = 220/234 (94.02%), Query Frame = 0


Query: 1   MASGFGESTSRQPQSPSCSDNNGDASNFECNICLDLAQDPIVTLCGHLFCWPCLYKWLQI 60
           MASGFGESTSRQPQSPSCSDNNGDASNFECNICLDLAQDPIVTLCGHLFCWPCLYKWL I
Sbjct: 1   MASGFGESTSRQPQSPSCSDNNGDASNFECNICLDLAQDPIVTLCGHLFCWPCLYKWLHI 60

Query: 61  HSHSHECPVCKAIIEDQKLVPLYGRGKTSTDPRSKTIPGINIPNRPAGQRPESAGPPSEP 120
           HSH  ECPVCKA+IE+QKLVPLYGRGKTSTDPRSK+IPG+NIPNRPAGQRPE+AGPP EP
Sbjct: 61  HSHPQECPVCKAMIEEQKLVPLYGRGKTSTDPRSKSIPGVNIPNRPAGQRPEAAGPPPEP 120

Query: 121 NPFPHNGFGFMGGLGGFAPMAPARFGNFTLSAAFGGLVPSLFNFQMHGYANPSMYGAAAN 180
           NPF HNGFGFMGGLGGFAPMA  RFGNFTLSAAFGGLVPSLFNFQMHGYA+PSMYGA AN
Sbjct: 121 NPFAHNGFGFMGGLGGFAPMASTRFGNFTLSAAFGGLVPSLFNFQMHGYADPSMYGAGAN 180

Query: 181 FPYGFPNMFHGSHG----HAHGYYHHLRQGQQDYYLKRLLLFICFCVLLALVWQ 231
           FPYGFPNMFHGSHG    HAHGYYHHLRQGQQDYYLKRLL FI FCVLLAL+WQ
Sbjct: 181 FPYGFPNMFHGSHGHGHAHAHGYYHHLRQGQQDYYLKRLLFFIGFCVLLALIWQ 234

[Close]

BLAST of Sed0019455 vs. ExPASy TrEMBL
Match: A0A6J1KA44 (E3 ubiquitin-protein ligase RNF185-like OS=Cucurbita maxima OX=3661 GN=LOC111492032 PE=4 SV=1)

HSP 1 Score: 449.1 bits (1154), Expect = 1.1e-122
Identity = 211/230 (91.74%), Postives = 218/230 (94.78%), Query Frame = 0


Query: 1   MASGFGESTSRQPQSPSCSDNNGDASNFECNICLDLAQDPIVTLCGHLFCWPCLYKWLQI 60
           M+ GFGESTSRQPQ PS SDNNGDASNFECNICLDLAQDPIVTLCGHLFCWPCLYKWL I
Sbjct: 1   MSRGFGESTSRQPQGPSYSDNNGDASNFECNICLDLAQDPIVTLCGHLFCWPCLYKWLHI 60

Query: 61  HSHSHECPVCKAIIEDQKLVPLYGRGKTSTDPRSKTIPGINIPNRPAGQRPESAGPPSEP 120
           HSH  ECPVCKA+IE+QKLVPLYGRGKTSTDPRSK+IPGINIPNRPAGQRPE+AGPP EP
Sbjct: 61  HSHPQECPVCKALIEEQKLVPLYGRGKTSTDPRSKSIPGINIPNRPAGQRPEAAGPPPEP 120

Query: 121 NPFPHNGFGFMGGLGGFAPMAPARFGNFTLSAAFGGLVPSLFNFQMHGYANPSMYGAAAN 180
           NPFPHNGFGFMGGLGGFAPMA  RFGNFTLSAAFGGLVPSLFNFQMHGYA+PSMYGA AN
Sbjct: 121 NPFPHNGFGFMGGLGGFAPMASTRFGNFTLSAAFGGLVPSLFNFQMHGYADPSMYGAGAN 180

Query: 181 FPYGFPNMFHGSHGHAHGYYHHLRQGQQDYYLKRLLLFICFCVLLALVWQ 231
            PYGFPNMFHGSHGHAHGYYHHLRQGQQDYYLKRLLLFI FCVLLAL+WQ
Sbjct: 181 VPYGFPNMFHGSHGHAHGYYHHLRQGQQDYYLKRLLLFIGFCVLLALIWQ 230

[Close]

BLAST of Sed0019455 vs. ExPASy TrEMBL
Match: A0A1S3BBQ8 (RING finger protein 5 OS=Cucumis melo OX=3656 GN=LOC103487942 PE=4 SV=1)

HSP 1 Score: 448.4 bits (1152), Expect = 1.9e-122
Identity = 213/230 (92.61%), Postives = 217/230 (94.35%), Query Frame = 0


Query: 1   MASGFGESTSRQPQSPSCSDNNGDASNFECNICLDLAQDPIVTLCGHLFCWPCLYKWLQI 60
           MASG GESTSRQPQSPSCSDNNGDASNFECNICLDLAQDPIVTLCGHLFCWPCLYKWL I
Sbjct: 1   MASGLGESTSRQPQSPSCSDNNGDASNFECNICLDLAQDPIVTLCGHLFCWPCLYKWLHI 60

Query: 61  HSHSHECPVCKAIIEDQKLVPLYGRGKTSTDPRSKTIPGINIPNRPAGQRPESAGPPSEP 120
           HSH  ECPVCKAIIE+QKLVPLYGRGKTSTDPRSK IPGINIPNRPAGQRPE+AGPP EP
Sbjct: 61  HSHPQECPVCKAIIEEQKLVPLYGRGKTSTDPRSKGIPGINIPNRPAGQRPEAAGPPPEP 120

Query: 121 NPFPHNGFGFMGGLGGFAPMAPARFGNFTLSAAFGGLVPSLFNFQMHGYANPSMYGAAAN 180
           NPFPHNGFGFMGGLGGFAPMA  RFGNFTLSAAFGGLVPSLFNFQMHGYA+PSMYGA AN
Sbjct: 121 NPFPHNGFGFMGGLGGFAPMASTRFGNFTLSAAFGGLVPSLFNFQMHGYADPSMYGAGAN 180

Query: 181 FPYGFPNMFHGSHGHAHGYYHHLRQGQQDYYLKRLLLFICFCVLLALVWQ 231
           FPYGFPNMFHGSHGHAHGYYH LRQGQQDYYLKRLLL I F VLLAL+WQ
Sbjct: 181 FPYGFPNMFHGSHGHAHGYYHQLRQGQQDYYLKRLLLLIGFFVLLALIWQ 230

[Close]

BLAST of Sed0019455 vs. TAIR 10
Match: AT1G19310.1 (RING/U-box superfamily protein )

HSP 1 Score: 290.0 bits (741), Expect = 1.6e-78
Identity = 145/220 (65.91%), Postives = 172/220 (78.18%), Query Frame = 0


Query: 16  PSCSD----NNGDASNFECNICLDLAQDPIVTLCGHLFCWPCLYKWLQIHSHSHECPVCK 75
           PSCS     NN D+SNFECNICLDLAQDPIVTLCGHLFCWPCLYKWL +HS S +CPVCK
Sbjct: 5   PSCSSGNDTNNNDSSNFECNICLDLAQDPIVTLCGHLFCWPCLYKWLHLHSQSKDCPVCK 64

Query: 76  AIIEDQKLVPLYGRGKTSTDPRSKTIPGINIPNRPAGQRPESAGPPSEPNPFPHNGFGFM 135
           A+IE+ +LVPLYGRGK+S DPRSK+IPG+ +PNRP+GQRPE+A PP   + F H+  GF 
Sbjct: 65  AVIEEDRLVPLYGRGKSSADPRSKSIPGLEVPNRPSGQRPETAQPPDPNHGFAHH-HGFG 124

Query: 136 GGLGGF-APMAPARFGNFTLSAAFGGLVPSLFNFQMHGYANPSMYGAAAN--FPYGFPNM 195
           G +GGF APMA ARFGN TLSAAFGGL+PSLFN   HG+ + +MYGAAA+  FP+GF N 
Sbjct: 125 GFMGGFAAPMASARFGNVTLSAAFGGLIPSLFNLHFHGFPDAAMYGAAASGGFPHGFSNP 184

Query: 196 FHGSHGHAHGYYHHL-RQGQQDYYLKRLLLFICFCVLLAL 228
           FHG H H H Y  H  RQGQQD++L+ LLL +   V+ +L
Sbjct: 185 FHGGHSHMHSYQRHTGRQGQQDHHLRILLLIVFVVVVFSL 223

[Close]

BLAST of Sed0019455 vs. TAIR 10
Match: AT2G23780.1 (RING/U-box superfamily protein )

HSP 1 Score: 243.0 bits (619), Expect = 2.3e-64
Identity = 126/230 (54.78%), Postives = 157/230 (68.26%), Query Frame = 0


Query: 6   GESTSRQPQSPSCSDNNGDASNFECNICLDLAQDPIVTLCGHLFCWPCLYKWLQIHSHSH 65
           GES++    S S +D N    +FECNIC +LAQDPIVTLCGHLFCWPCLY+WL  HSHS 
Sbjct: 4   GESSTSTSYSDSNNDTNDQGGDFECNICFELAQDPIVTLCGHLFCWPCLYRWLHHHSHSQ 63

Query: 66  ECPVCKAIIEDQKLVPLYGRGKTSTDPRSKTIPGINIPNRPAGQRPESAGPPSEP---NP 125
           ECPVCKA+++D KLVPLYGRGK  TDPRSK  PG+ IPNRP GQRPE+A PP +P   + 
Sbjct: 64  ECPVCKAVVQDDKLVPLYGRGKNQTDPRSKRYPGLRIPNRPTGQRPETAAPPPQPEAASN 123

Query: 126 FPHNGFGFMGGLGGFAPMAPARFGNFTLSAAFGGLVPSLFNFQMHGYANPSMYGAAANFP 185
           F + G G MGG+     MA  RFGNF  S  FGGL+PSLFNFQ HG+ + ++YG+   +P
Sbjct: 124 FFNYGIGLMGGI--MPMMATTRFGNF--SMGFGGLLPSLFNFQFHGFHDATLYGSTPGYP 183

Query: 186 Y-GFPNMFHGSHGHAHGYYHHLRQG--QQDYYLKRLLLFICFCVLLALVW 230
           Y G+ N F G      G    + +G  Q D +LK +L F+  CV++ L+W
Sbjct: 184 YGGYHNGFRGV--PPRGQERPMARGGNQSDAFLKNILFFVGICVVIFLIW 227

[Close]

BLAST of Sed0019455 vs. TAIR 10
Match: AT1G74990.1 (RING/U-box superfamily protein )

HSP 1 Score: 156.8 bits (395), Expect = 2.2e-38
Identity = 75/133 (56.39%), Postives = 93/133 (69.92%), Query Frame = 0


Query: 19  SDNNGDASNFECNICLDLAQDPIVTLCGHLFCWPCLYKWLQIHSHSHECPVCKAIIEDQK 78
           ++ +  ++NF CNICL+LA++PIVTLCGHLFCWPCLYKWL  HS S+ CPVCKA++++  
Sbjct: 8   NEEDDASNNFGCNICLELAREPIVTLCGHLFCWPCLYKWLHYHSKSNHCPVCKALVKEDT 67

Query: 79  LVPLYGRGKTSTDPRSKTIPGINIPNRPAGQRPESAGPPSEPNPFPHNGFGFMGGLGGFA 138
           LVPLYG GK S+DPRSK   G+ +PNRPA  R E+A P  E     H+G  F GG   FA
Sbjct: 68  LVPLYGMGKPSSDPRSKLNSGVTVPNRPAATRTETARPRLEQR---HHGSSFFGGHSSFA 127

Query: 139 PMAPA-RFGNFTL 151
            M    RF NF L
Sbjct: 128 AMPTGLRFSNFLL 137

[Close]

BLAST of Sed0019455 vs. TAIR 10
Match: AT4G03510.1 (RING membrane-anchor 1 )

HSP 1 Score: 111.3 bits (277), Expect = 1.0e-24
Identity = 51/110 (46.36%), Postives = 69/110 (62.73%), Query Frame = 0


Query: 7   ESTSRQPQSPSCSDNNGDASNFECNICLDLAQDPIVTLCGHLFCWPCLYKWLQIHSHS-- 66
           +S   +P + S   ++ D SNF+CNICLD  Q+P+VTLCGHLFCWPC++KWL + S S  
Sbjct: 25  KSKKPEPITVSVPSDDTDDSNFDCNICLDSVQEPVVTLCGHLFCWPCIHKWLDVQSFSTS 84

Query: 67  ------HECPVCKAIIEDQKLVPLYGRGKTSTDPRSKTIPGINIPNRPAG 109
                  +CPVCK+ +    LVPLYGRG+ +T    K     ++P RP G
Sbjct: 85  DEYQRHRQCPVCKSKVSHSTLVPLYGRGRCTTQEEGKN----SVPKRPVG 130

[Close]

BLAST of Sed0019455 vs. TAIR 10
Match: AT4G03510.2 (RING membrane-anchor 1 )

HSP 1 Score: 111.3 bits (277), Expect = 1.0e-24
Identity = 51/110 (46.36%), Postives = 69/110 (62.73%), Query Frame = 0


Query: 7   ESTSRQPQSPSCSDNNGDASNFECNICLDLAQDPIVTLCGHLFCWPCLYKWLQIHSHS-- 66
           +S   +P + S   ++ D SNF+CNICLD  Q+P+VTLCGHLFCWPC++KWL + S S  
Sbjct: 25  KSKKPEPITVSVPSDDTDDSNFDCNICLDSVQEPVVTLCGHLFCWPCIHKWLDVQSFSTS 84

Query: 67  ------HECPVCKAIIEDQKLVPLYGRGKTSTDPRSKTIPGINIPNRPAG 109
                  +CPVCK+ +    LVPLYGRG+ +T    K     ++P RP G
Sbjct: 85  DEYQRHRQCPVCKSKVSHSTLVPLYGRGRCTTQEEGKN----SVPKRPVG 130

The following BLAST results are available for this feature:

BLAST of Sed0019455 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038884023.1	3.7e-125	93.91	E3 ubiquitin ligase rnf-5 [Benincasa hispida]	[more]
KAG6598412.1	2.7e-123	92.61	E3 ubiquitin ligase rnf-5, partial [Cucurbita argyrosperma subsp. sororia]	[more]
XP_023547002.1	2.7e-123	92.61	E3 ubiquitin-protein ligase RNF185-like [Cucurbita pepo subsp. pepo] >XP_0235470...	[more]
XP_022962412.1	5.9e-123	92.17	E3 ubiquitin-protein ligase RNF185-like [Cucurbita moschata] >XP_022962413.1 E3 ...	[more]
XP_022144378.1	1.0e-122	92.17	E3 ubiquitin-protein ligase RNF185 [Momordica charantia]	[more]

BLAST of Sed0019455 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q09463	2.3e-29	37.14	E3 ubiquitin ligase rnf-5 OS=Caenorhabditis elegans OX=6239 GN=rnf-5 PE=1 SV=1	[more]
Q5ZIR9	2.4e-26	50.77	E3 ubiquitin-protein ligase RNF185 OS=Gallus gallus OX=9031 GN=RNF185 PE=2 SV=1	[more]
Q96GF1	9.1e-26	49.65	E3 ubiquitin-protein ligase RNF185 OS=Homo sapiens OX=9606 GN=RNF185 PE=1 SV=1	[more]
Q5RFK9	9.1e-26	49.65	E3 ubiquitin-protein ligase RNF185 OS=Pongo abelii OX=9601 GN=RNF185 PE=2 SV=1	[more]
Q91YT2	1.2e-25	51.61	E3 ubiquitin-protein ligase RNF185 OS=Mus musculus OX=10090 GN=Rnf185 PE=2 SV=1	[more]

BLAST of Sed0019455 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1HCN0	2.9e-123	92.17	E3 ubiquitin-protein ligase RNF185-like OS=Cucurbita moschata OX=3662 GN=LOC1114...	[more]
A0A6J1CT42	4.9e-123	92.17	E3 ubiquitin-protein ligase RNF185 OS=Momordica charantia OX=3673 GN=LOC11101407...	[more]
A0A6J1GGW7	8.3e-123	91.03	RING finger protein 5 OS=Cucurbita moschata OX=3662 GN=LOC111454080 PE=4 SV=1	[more]
A0A6J1KA44	1.1e-122	91.74	E3 ubiquitin-protein ligase RNF185-like OS=Cucurbita maxima OX=3661 GN=LOC111492...	[more]
A0A1S3BBQ8	1.9e-122	92.61	RING finger protein 5 OS=Cucumis melo OX=3656 GN=LOC103487942 PE=4 SV=1	[more]

BLAST of Sed0019455 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G19310.1	1.6e-78	65.91	RING/U-box superfamily protein	[more]
AT2G23780.1	2.3e-64	54.78	RING/U-box superfamily protein	[more]
AT1G74990.1	2.2e-38	56.39	RING/U-box superfamily protein	[more]
AT4G03510.1	1.0e-24	46.36	RING membrane-anchor 1	[more]
AT4G03510.2	1.0e-24	46.36	RING membrane-anchor 1	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001841	Zinc finger, RING-type	SMART	SM00184	ring_2	coord: 30..70 e-value: 3.2E-8 score: 43.3
IPR001841	Zinc finger, RING-type	PROSITE	PS50089	ZF_RING_2	coord: 30..71 score: 13.374458
IPR013083	Zinc finger, RING/FYVE/PHD-type	GENE3D	3.30.40.10	Zinc/RING finger domain, C3HC4 (zinc finger)	coord: 9..84 e-value: 1.5E-17 score: 64.7
None	No IPR available	PFAM	PF13923	zf-C3HC4_2	coord: 29..70 e-value: 5.2E-9 score: 35.8
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..20
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 84..121
None	No IPR available	PANTHER	PTHR12313:SF39	OS12G0636000 PROTEIN	coord: 2..230
None	No IPR available	CDD	cd16745	RING-HC_AtRMA_like	coord: 28..72 e-value: 4.26362E-29 score: 101.612
None	No IPR available	SUPERFAMILY	57850	RING/U-box	coord: 26..83
IPR045103	E3 ubiquitin-protein ligase RNF5/RNF185-like	PANTHER	PTHR12313	E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED	coord: 2..230
IPR017907	Zinc finger, RING-type, conserved site	PROSITE	PS00518	ZF_RING_1	coord: 45..54

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0019455.1	Sed0019455.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0071712	ER-associated misfolded protein catabolic process
biological_process	GO:0016567	protein ubiquitination
biological_process	GO:0006511	ubiquitin-dependent protein catabolic process
cellular_component	GO:0005783	endoplasmic reticulum
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0046872	metal ion binding
molecular_function	GO:0044390	ubiquitin-like protein conjugating enzyme binding
molecular_function	GO:0061630	ubiquitin protein ligase activity