Sed0019438 (gene) Chayote v1

Overview


Name	Sed0019438
Type	gene
Organism	Sechium edule (Chayote v1)
Description	60S ribosomal protein L8
Location	LG10: 8337308 .. 8339294 (-)
RNA-Seq Expression	Sed0019438
Synteny	Sed0019438

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GGCCTATTATAAATGAGTCTAAACCCTAGTTTTCTCTGTGATCGTCATTGTAGCCGAACTGAAAATCACCCATCTCAGCCGCCATGGGAAGGGTCATTCGAGCTCAGCGTAAGGGAGCAGGCTCCGTCTTCAAGTCCCACACCCATCACCGGAAGGGTCCGGCCAGGTTCCGAAGTCTGGACTTCGGTGAACGGAATGGTTACCTGAAAGGAGTCGTCAATGAGATCGTTCACGATCCCGGCCGTGGAGCGCCGCTCGCTCGAGTTTCGTTCCGCCATCCTTTCAGGTACAAGAAACAGAATGAGCTTTTCGTTGCGGCCGAAGGTATGTACACTGGCCAATTTATTTACTGCGGGAAGAAGGCGAATCTCGTTGTCGGCAATGTCTTGCCTGTAAGATCGATCCCTGAAGGTGCTGTCATCTGCAATGTCGAACACCATGTCGGTGACCGTGGTGTTTTCGCTAGGTGTTCCGGAGATTACGCTATTGTTATCAGCCACAATCCCGAAAATGACACTTCCAGGTTTTTGTTTCGAATCCTTTTACTTGAAAAATATGTTTGATGATTTTTTTTGGTCTTTATGTCACTCATATTATCTCAATCAAACTGATTATATGTACACATGTGTGCACAAACCTTGCTAAGCAGTCATTTTCTAATAAGTTAAGTTAATTATCTGCTTTATTGACTGAATTTGTATCATTTAGATTGCTTTCATGTTTTGGAAGGGAATTATGATGATCTGTATTAGAAGATGAAAAGAGAGGTGGATTAAAATGAAAGCTCAGAGATGGACTGAGTTCAGAAGAACTAAAACTGAGCCAAGTAATTAAGAGAAAATAAATAATATTTTTGATTGAAATTAAGGTTGAGTTTTGATGAAAACAAATTCTTAATGTAAGCATACCCAGAGTTGGTAGTTTTCTTATAAATTTATGTTGATTAGTAGTTGTATGTAAACTCTCTCTCTCTCATGTTAGCTATCATGAATTAATTTCATCACTTAGTCCCGTTTGATAACCAAATAGTTTTCCCAAGACCAGCTTGACCTACCATTATACTAGTTATTGGCAGGTGGTTAGTTCACTGTTTTTATGATGTTAGTGAAGAGAACTGATGTTTGTAATGTTTGCAACTACGAACATCAACCTATATATTGAAATGATATTATCTACTTTGGACATAAGCCTTCATGACCTTGACCTCGAAGGTTTTATATCAATGAATATGTTGTCCTTGCCTATAAATTCAAGATCTTCCACTTATATTAGCTGTGACTTGGGTATGGGATATTGTTCACATCTTATGTCATTTTATCTCCTTTCAGATTTTTTTAGTAATTTGTAATGAACAGATAAAGGCACATCCAAGTGGCATTTGATTCAACATTGCATTCATTTTCTATTGAAGACTGATCCTCATTTTCAATTATGTCCAGGATCAAACTTCCATCCGGTTCCAAGAAAATTGTCCCGAGTGGGTGCCGTGCCATGGTTGGTCAGGTTGCGGGTGGAGGTAGGACTGAGAAGCCCCTCCTGAAGGCTGGTAACGCATACCACAAATTTAGAGTGAAGAGAAACTGCTGGCCTAAGGTTCGTGGTGTTGCAATGAATCCCGTCGAGCATCCTCACGGAGGAGGTAACCATCAACATATTGGACACGCCAGCACGGTTAGGCGGGATGCACCTCCTGGCCAAAAGGTTGGTCTCATTGCTGCAAGGAGAACTGGTAGACTCAGAGGACAAGCTGCAGCTTCCGCTGCTAAAGCTGATAAGGCTTAAACAGTATTATAATTTAGATTATTACTTGTTTTTTGAGGTATTTTGTTGTGCTTTCATCTTTCAATTTTCCTAAAGACTAGTTGTTCCCCCATTGACTTTTGAGAAACCGTTGTTTAGTCCGAGTGTTTACCGTTCTGAAATTTTGTTTTTTTATCTGCATAAAATCGGTCCGAGTAATCTGTTTTATATATTTGGTTACCTAGAA

mRNA sequence

GGCCTATTATAAATGAGTCTAAACCCTAGTTTTCTCTGTGATCGTCATTGTAGCCGAACTGAAAATCACCCATCTCAGCCGCCATGGGAAGGGTCATTCGAGCTCAGCGTAAGGGAGCAGGCTCCGTCTTCAAGTCCCACACCCATCACCGGAAGGGTCCGGCCAGGTTCCGAAGTCTGGACTTCGGTGAACGGAATGGTTACCTGAAAGGAGTCGTCAATGAGATCGTTCACGATCCCGGCCGTGGAGCGCCGCTCGCTCGAGTTTCGTTCCGCCATCCTTTCAGGTACAAGAAACAGAATGAGCTTTTCGTTGCGGCCGAAGGTATGTACACTGGCCAATTTATTTACTGCGGGAAGAAGGCGAATCTCGTTGTCGGCAATGTCTTGCCTGTAAGATCGATCCCTGAAGGTGCTGTCATCTGCAATGTCGAACACCATGTCGGTGACCGTGGTGTTTTCGCTAGGTGTTCCGGAGATTACGCTATTGTTATCAGCCACAATCCCGAAAATGACACTTCCAGGATCAAACTTCCATCCGGTTCCAAGAAAATTGTCCCGAGTGGGTGCCGTGCCATGGTTGGTCAGGTTGCGGGTGGAGGTAGGACTGAGAAGCCCCTCCTGAAGGCTGGTAACGCATACCACAAATTTAGAGTGAAGAGAAACTGCTGGCCTAAGGTTCGTGGTGTTGCAATGAATCCCGTCGAGCATCCTCACGGAGGAGGTAACCATCAACATATTGGACACGCCAGCACGGTTAGGCGGGATGCACCTCCTGGCCAAAAGGTTGGTCTCATTGCTGCAAGGAGAACTGGTAGACTCAGAGGACAAGCTGCAGCTTCCGCTGCTAAAGCTGATAAGGCTTAAACAGTATTATAATTTAGATTATTACTTGTTTTTTGAGGTATTTTGTTGTGCTTTCATCTTTCAATTTTCCTAAAGACTAGTTGTTCCCCCATTGACTTTTGAGAAACCGTTGTTTAGTCCGAGTGTTTACCGTTCTGAAATTTTGTTTTTTTATCTGCATAAAATCGGTCCGAGTAATCTGTTTTATATATTTGGTTACCTAGAA

Coding sequence (CDS)

ATGGGAAGGGTCATTCGAGCTCAGCGTAAGGGAGCAGGCTCCGTCTTCAAGTCCCACACCCATCACCGGAAGGGTCCGGCCAGGTTCCGAAGTCTGGACTTCGGTGAACGGAATGGTTACCTGAAAGGAGTCGTCAATGAGATCGTTCACGATCCCGGCCGTGGAGCGCCGCTCGCTCGAGTTTCGTTCCGCCATCCTTTCAGGTACAAGAAACAGAATGAGCTTTTCGTTGCGGCCGAAGGTATGTACACTGGCCAATTTATTTACTGCGGGAAGAAGGCGAATCTCGTTGTCGGCAATGTCTTGCCTGTAAGATCGATCCCTGAAGGTGCTGTCATCTGCAATGTCGAACACCATGTCGGTGACCGTGGTGTTTTCGCTAGGTGTTCCGGAGATTACGCTATTGTTATCAGCCACAATCCCGAAAATGACACTTCCAGGATCAAACTTCCATCCGGTTCCAAGAAAATTGTCCCGAGTGGGTGCCGTGCCATGGTTGGTCAGGTTGCGGGTGGAGGTAGGACTGAGAAGCCCCTCCTGAAGGCTGGTAACGCATACCACAAATTTAGAGTGAAGAGAAACTGCTGGCCTAAGGTTCGTGGTGTTGCAATGAATCCCGTCGAGCATCCTCACGGAGGAGGTAACCATCAACATATTGGACACGCCAGCACGGTTAGGCGGGATGCACCTCCTGGCCAAAAGGTTGGTCTCATTGCTGCAAGGAGAACTGGTAGACTCAGAGGACAAGCTGCAGCTTCCGCTGCTAAAGCTGATAAGGCTTAA

Protein sequence

MGRVIRAQRKGAGSVFKSHTHHRKGPARFRSLDFGERNGYLKGVVNEIVHDPGRGAPLARVSFRHPFRYKKQNELFVAAEGMYTGQFIYCGKKANLVVGNVLPVRSIPEGAVICNVEHHVGDRGVFARCSGDYAIVISHNPENDTSRIKLPSGSKKIVPSGCRAMVGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVGLIAARRTGRLRGQAAASAAKADKA

Homology

[Close]

BLAST of Sed0019438 vs. NCBI nr
Match: XP_004134871.1 (60S ribosomal protein L8-3 [Cucumis sativus] >XP_038883668.1 60S ribosomal protein L8-3 [Benincasa hispida] >KGN48902.1 hypothetical protein Csa_004176 [Cucumis sativus])

HSP 1 Score: 527.3 bits (1357), Expect = 7.3e-146
Identity = 253/260 (97.31%), Postives = 259/260 (99.62%), Query Frame = 0


Query: 1   MGRVIRAQRKGAGSVFKSHTHHRKGPARFRSLDFGERNGYLKGVVNEIVHDPGRGAPLAR 60
           MGRVIRAQRKGAGSVFKSHTHHRKGPARFRSLDFGERNGYLKGVV EI+HDPGRGAPLAR
Sbjct: 1   MGRVIRAQRKGAGSVFKSHTHHRKGPARFRSLDFGERNGYLKGVVTEIIHDPGRGAPLAR 60

Query: 61  VSFRHPFRYKKQNELFVAAEGMYTGQFIYCGKKANLVVGNVLPVRSIPEGAVICNVEHHV 120
           VSFRHPFRYKKQNELFVAAEGMYTGQF+YCGKKANLVVGNVLPVRSIPEGAV+CNVEHHV
Sbjct: 61  VSFRHPFRYKKQNELFVAAEGMYTGQFVYCGKKANLVVGNVLPVRSIPEGAVVCNVEHHV 120

Query: 121 GDRGVFARCSGDYAIVISHNPENDTSRIKLPSGSKKIVPSGCRAMVGQVAGGGRTEKPLL 180
           GDRGVFARCSGDYAIVISHNP+NDTSRIKLPSG+KKIVPSGCRAMVGQVAGGGRTEKPLL
Sbjct: 121 GDRGVFARCSGDYAIVISHNPDNDTSRIKLPSGAKKIVPSGCRAMVGQVAGGGRTEKPLL 180

Query: 181 KAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVGLIAA 240
           KAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVGLIAA
Sbjct: 181 KAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVGLIAA 240

Query: 241 RRTGRLRGQAAASAAKADKA 261
           RRTGRLRGQAAA+AAKADKA
Sbjct: 241 RRTGRLRGQAAATAAKADKA 260

[Close]

BLAST of Sed0019438 vs. NCBI nr
Match: XP_008440805.1 (PREDICTED: 60S ribosomal protein L8-3 [Cucumis melo] >KAA0025686.1 60S ribosomal protein L8-3 [Cucumis melo var. makuwa] >TYK12561.1 60S ribosomal protein L8-3 [Cucumis melo var. makuwa])

HSP 1 Score: 525.8 bits (1353), Expect = 2.1e-145
Identity = 251/260 (96.54%), Postives = 259/260 (99.62%), Query Frame = 0


Query: 1   MGRVIRAQRKGAGSVFKSHTHHRKGPARFRSLDFGERNGYLKGVVNEIVHDPGRGAPLAR 60
           MGRVIRAQRKGAGSVF+SHTHHRKGPARFRSLDFGERNGYLKGVV EI+HDPGRGAPLAR
Sbjct: 1   MGRVIRAQRKGAGSVFRSHTHHRKGPARFRSLDFGERNGYLKGVVTEIIHDPGRGAPLAR 60

Query: 61  VSFRHPFRYKKQNELFVAAEGMYTGQFIYCGKKANLVVGNVLPVRSIPEGAVICNVEHHV 120
           VSFRHPFRYKKQNELFVAAEGMYTGQF+YCGKKANLVVGNVLP+RSIPEGAV+CNVEHHV
Sbjct: 61  VSFRHPFRYKKQNELFVAAEGMYTGQFVYCGKKANLVVGNVLPIRSIPEGAVVCNVEHHV 120

Query: 121 GDRGVFARCSGDYAIVISHNPENDTSRIKLPSGSKKIVPSGCRAMVGQVAGGGRTEKPLL 180
           GDRGVFARCSGDYAIVISHNP+NDTSRIKLPSG+KKIVPSGCRAMVGQVAGGGRTEKPLL
Sbjct: 121 GDRGVFARCSGDYAIVISHNPDNDTSRIKLPSGAKKIVPSGCRAMVGQVAGGGRTEKPLL 180

Query: 181 KAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVGLIAA 240
           KAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVGLIAA
Sbjct: 181 KAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVGLIAA 240

Query: 241 RRTGRLRGQAAASAAKADKA 261
           RRTGRLRGQAAA+AAKADKA
Sbjct: 241 RRTGRLRGQAAATAAKADKA 260

[Close]

BLAST of Sed0019438 vs. NCBI nr
Match: XP_022133211.1 (60S ribosomal protein L8 [Momordica charantia])

HSP 1 Score: 524.6 bits (1350), Expect = 4.8e-145
Identity = 250/260 (96.15%), Postives = 259/260 (99.62%), Query Frame = 0


Query: 1   MGRVIRAQRKGAGSVFKSHTHHRKGPARFRSLDFGERNGYLKGVVNEIVHDPGRGAPLAR 60
           MGRVIRAQRKGAGSVFKSHTHHRKGPARFRSLDFGERNGYLKGV+ EIVHDPGRGAPLAR
Sbjct: 1   MGRVIRAQRKGAGSVFKSHTHHRKGPARFRSLDFGERNGYLKGVITEIVHDPGRGAPLAR 60

Query: 61  VSFRHPFRYKKQNELFVAAEGMYTGQFIYCGKKANLVVGNVLPVRSIPEGAVICNVEHHV 120
           V+FRHPFRYKKQNELFVAAEGMYTGQF+YCGKKANL+VGNVLP+RSIPEGAV+CNVEHHV
Sbjct: 61  VTFRHPFRYKKQNELFVAAEGMYTGQFVYCGKKANLMVGNVLPLRSIPEGAVVCNVEHHV 120

Query: 121 GDRGVFARCSGDYAIVISHNPENDTSRIKLPSGSKKIVPSGCRAMVGQVAGGGRTEKPLL 180
           GDRGVFARCSGDYAIVISHNP+NDTSRIKLPSGSKK+VPSGCRAMVGQVAGGGRTEKPLL
Sbjct: 121 GDRGVFARCSGDYAIVISHNPDNDTSRIKLPSGSKKVVPSGCRAMVGQVAGGGRTEKPLL 180

Query: 181 KAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVGLIAA 240
           KAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVGLIAA
Sbjct: 181 KAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVGLIAA 240

Query: 241 RRTGRLRGQAAASAAKADKA 261
           RRTGRLRGQAAA+AAKADKA
Sbjct: 241 RRTGRLRGQAAATAAKADKA 260

[Close]

BLAST of Sed0019438 vs. NCBI nr
Match: XP_023003927.1 (60S ribosomal protein L8-3 [Cucurbita maxima] >XP_023518952.1 60S ribosomal protein L8-3 [Cucurbita pepo subsp. pepo] >KAG6594783.1 60S ribosomal protein L8, partial [Cucurbita argyrosperma subsp. sororia] >KAG7026748.1 60S ribosomal protein L8 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 523.9 bits (1348), Expect = 8.1e-145
Identity = 249/260 (95.77%), Postives = 260/260 (100.00%), Query Frame = 0


Query: 1   MGRVIRAQRKGAGSVFKSHTHHRKGPARFRSLDFGERNGYLKGVVNEIVHDPGRGAPLAR 60
           MGRVIRAQRKGAGSVFKSHTHHRKGPARFRSLDFGERNGYLKGVV+EI+HDPGRGAPLAR
Sbjct: 1   MGRVIRAQRKGAGSVFKSHTHHRKGPARFRSLDFGERNGYLKGVVSEIIHDPGRGAPLAR 60

Query: 61  VSFRHPFRYKKQNELFVAAEGMYTGQFIYCGKKANLVVGNVLPVRSIPEGAVICNVEHHV 120
           V+FRHPFRYKKQNELFVAAEGMYTGQF+YCGKKANL+VGNVLP+RSIPEGAV+CNVEHHV
Sbjct: 61  VTFRHPFRYKKQNELFVAAEGMYTGQFVYCGKKANLMVGNVLPLRSIPEGAVVCNVEHHV 120

Query: 121 GDRGVFARCSGDYAIVISHNPENDTSRIKLPSGSKKIVPSGCRAMVGQVAGGGRTEKPLL 180
           GDRGVFARCSGDYAIVISHNP+NDTSRIKLPSGSKK+VPSGCRAMVGQVAGGGRTEKPLL
Sbjct: 121 GDRGVFARCSGDYAIVISHNPDNDTSRIKLPSGSKKVVPSGCRAMVGQVAGGGRTEKPLL 180

Query: 181 KAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVGLIAA 240
           KAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVGLIAA
Sbjct: 181 KAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVGLIAA 240

Query: 241 RRTGRLRGQAAASAAKADKA 261
           RRTGRLRGQAAA+A+KADKA
Sbjct: 241 RRTGRLRGQAAATASKADKA 260

[Close]

BLAST of Sed0019438 vs. NCBI nr
Match: XP_022963335.1 (60S ribosomal protein L8-3 [Cucurbita moschata])

HSP 1 Score: 522.7 bits (1345), Expect = 1.8e-144
Identity = 248/260 (95.38%), Postives = 260/260 (100.00%), Query Frame = 0


Query: 1   MGRVIRAQRKGAGSVFKSHTHHRKGPARFRSLDFGERNGYLKGVVNEIVHDPGRGAPLAR 60
           MGRVIRAQRKGAGSVFKSHTHHRKGPARFRSLDFGERNGYLKGVV+EI+HDPGRGAPLAR
Sbjct: 1   MGRVIRAQRKGAGSVFKSHTHHRKGPARFRSLDFGERNGYLKGVVSEIIHDPGRGAPLAR 60

Query: 61  VSFRHPFRYKKQNELFVAAEGMYTGQFIYCGKKANLVVGNVLPVRSIPEGAVICNVEHHV 120
           V+FRHPFRYKKQNELFVAAEGMYTGQF+YCGKKANL+VGNVLP+R+IPEGAV+CNVEHHV
Sbjct: 61  VTFRHPFRYKKQNELFVAAEGMYTGQFVYCGKKANLMVGNVLPLRAIPEGAVVCNVEHHV 120

Query: 121 GDRGVFARCSGDYAIVISHNPENDTSRIKLPSGSKKIVPSGCRAMVGQVAGGGRTEKPLL 180
           GDRGVFARCSGDYAIVISHNP+NDTSRIKLPSGSKK+VPSGCRAMVGQVAGGGRTEKPLL
Sbjct: 121 GDRGVFARCSGDYAIVISHNPDNDTSRIKLPSGSKKVVPSGCRAMVGQVAGGGRTEKPLL 180

Query: 181 KAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVGLIAA 240
           KAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVGLIAA
Sbjct: 181 KAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVGLIAA 240

Query: 241 RRTGRLRGQAAASAAKADKA 261
           RRTGRLRGQAAA+A+KADKA
Sbjct: 241 RRTGRLRGQAAATASKADKA 260

[Close]

BLAST of Sed0019438 vs. ExPASy Swiss-Prot
Match: Q42064 (60S ribosomal protein L8-3 OS=Arabidopsis thaliana OX=3702 GN=RPL8C PE=2 SV=2)

HSP 1 Score: 505.4 bits (1300), Expect = 3.9e-142
Identity = 240/258 (93.02%), Postives = 253/258 (98.06%), Query Frame = 0


Query: 1   MGRVIRAQRKGAGSVFKSHTHHRKGPARFRSLDFGERNGYLKGVVNEIVHDPGRGAPLAR 60
           MGRVIRAQRKGAGSVFKSHTHHRKGPA+FRSLDFGERNGYLKGVV EI+HDPGRGAPLAR
Sbjct: 1   MGRVIRAQRKGAGSVFKSHTHHRKGPAKFRSLDFGERNGYLKGVVTEIIHDPGRGAPLAR 60

Query: 61  VSFRHPFRYKKQNELFVAAEGMYTGQFIYCGKKANLVVGNVLPVRSIPEGAVICNVEHHV 120
           V+FRHPFR+KKQ ELFVAAEGMYTGQF+YCGKKA LVVGNVLP+RSIPEGAVICNVEHHV
Sbjct: 61  VAFRHPFRFKKQKELFVAAEGMYTGQFLYCGKKATLVVGNVLPLRSIPEGAVICNVEHHV 120

Query: 121 GDRGVFARCSGDYAIVISHNPENDTSRIKLPSGSKKIVPSGCRAMVGQVAGGGRTEKPLL 180
           GDRGVFAR SGDYAIVI+HNP+NDTSRIKLPSGSKKIVPSGCRAM+GQVAGGGRTEKP+L
Sbjct: 121 GDRGVFARASGDYAIVIAHNPDNDTSRIKLPSGSKKIVPSGCRAMIGQVAGGGRTEKPML 180

Query: 181 KAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVGLIAA 240
           KAGNAYHK+RVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPG+KVGLIAA
Sbjct: 181 KAGNAYHKYRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGKKVGLIAA 240

Query: 241 RRTGRLRGQAAASAAKAD 259
           RRTGRLRGQAAA A+KAD
Sbjct: 241 RRTGRLRGQAAALASKAD 258

[Close]

BLAST of Sed0019438 vs. ExPASy Swiss-Prot
Match: P29766 (60S ribosomal protein L8 OS=Solanum lycopersicum OX=4081 GN=RPL8 PE=2 SV=1)

HSP 1 Score: 503.1 bits (1294), Expect = 1.9e-141
Identity = 236/260 (90.77%), Postives = 253/260 (97.31%), Query Frame = 0


Query: 1   MGRVIRAQRKGAGSVFKSHTHHRKGPARFRSLDFGERNGYLKGVVNEIVHDPGRGAPLAR 60
           MGRVIRAQRKGAGSVFKSHTHHRKGPARFR+LDFGERNGYLKGV+ E++HDPGRGAPLAR
Sbjct: 1   MGRVIRAQRKGAGSVFKSHTHHRKGPARFRTLDFGERNGYLKGVITEVIHDPGRGAPLAR 60

Query: 61  VSFRHPFRYKKQNELFVAAEGMYTGQFIYCGKKANLVVGNVLPVRSIPEGAVICNVEHHV 120
           V+FRHPFRYK Q ELFVAAEGMYTGQF+YCGKKA L+VGNVLP+RSIPEGAV+CNVEH V
Sbjct: 61  VTFRHPFRYKHQKELFVAAEGMYTGQFVYCGKKATLMVGNVLPLRSIPEGAVVCNVEHKV 120

Query: 121 GDRGVFARCSGDYAIVISHNPENDTSRIKLPSGSKKIVPSGCRAMVGQVAGGGRTEKPLL 180
           GDRGVFARCSGDYAIVISHNP+N T+R+KLPSG+KKIVPSGCRAM+GQVAGGGRTEKP+L
Sbjct: 121 GDRGVFARCSGDYAIVISHNPDNGTTRVKLPSGAKKIVPSGCRAMIGQVAGGGRTEKPML 180

Query: 181 KAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVGLIAA 240
           KAGNAYHK+RVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVGLIAA
Sbjct: 181 KAGNAYHKYRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVGLIAA 240

Query: 241 RRTGRLRGQAAASAAKADKA 261
           RRTGRLRGQA A+AAKADKA
Sbjct: 241 RRTGRLRGQARATAAKADKA 260

[Close]

BLAST of Sed0019438 vs. ExPASy Swiss-Prot
Match: P46286 (60S ribosomal protein L8-1 OS=Arabidopsis thaliana OX=3702 GN=RPL8A PE=1 SV=2)

HSP 1 Score: 500.7 bits (1288), Expect = 9.7e-141
Identity = 238/258 (92.25%), Postives = 252/258 (97.67%), Query Frame = 0


Query: 1   MGRVIRAQRKGAGSVFKSHTHHRKGPARFRSLDFGERNGYLKGVVNEIVHDPGRGAPLAR 60
           MGRVIRAQRKGAGSVFKSHTHHRKGPA+FRSLDFGERNGYLKGVV EI+HDPGRGAPLAR
Sbjct: 1   MGRVIRAQRKGAGSVFKSHTHHRKGPAKFRSLDFGERNGYLKGVVTEIIHDPGRGAPLAR 60

Query: 61  VSFRHPFRYKKQNELFVAAEGMYTGQFIYCGKKANLVVGNVLPVRSIPEGAVICNVEHHV 120
           V+FRHPFR+KKQ ELFVAAEGMYTGQF+YCGKKA LVVGNVLP+RSIPEGAV+CNVEHHV
Sbjct: 61  VTFRHPFRFKKQKELFVAAEGMYTGQFLYCGKKATLVVGNVLPLRSIPEGAVVCNVEHHV 120

Query: 121 GDRGVFARCSGDYAIVISHNPENDTSRIKLPSGSKKIVPSGCRAMVGQVAGGGRTEKPLL 180
           GDRGV AR SGDYAIVI+HNP++DT+RIKLPSGSKKIVPSGCRAM+GQVAGGGRTEKP+L
Sbjct: 121 GDRGVLARASGDYAIVIAHNPDSDTTRIKLPSGSKKIVPSGCRAMIGQVAGGGRTEKPML 180

Query: 181 KAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVGLIAA 240
           KAGNAYHK+RVKRN WPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVGLIAA
Sbjct: 181 KAGNAYHKYRVKRNSWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVGLIAA 240

Query: 241 RRTGRLRGQAAASAAKAD 259
           RRTGRLRGQAAASAAKAD
Sbjct: 241 RRTGRLRGQAAASAAKAD 258

[Close]

BLAST of Sed0019438 vs. ExPASy Swiss-Prot
Match: P25998 (60S ribosomal protein L8 OS=Nicotiana tabacum OX=4097 GN=RPL8 PE=2 SV=1)

HSP 1 Score: 493.4 bits (1269), Expect = 1.5e-138
Identity = 233/260 (89.62%), Postives = 249/260 (95.77%), Query Frame = 0


Query: 1   MGRVIRAQRKGAGSVFKSHTHHRKGPARFRSLDFGERNGYLKGVVNEIVHDPGRGAPLAR 60
           MGR+IRAQRKGAGSVFKSHTHHRKGPARFRSLDFGERNGYLKGV+ E++HDPGRGAPLAR
Sbjct: 1   MGRLIRAQRKGAGSVFKSHTHHRKGPARFRSLDFGERNGYLKGVITEVIHDPGRGAPLAR 60

Query: 61  VSFRHPFRYKKQNELFVAAEGMYTGQFIYCGKKANLVVGNVLPVRSIPEGAVICNVEHHV 120
           V+FR+PFRY  Q ELFVAAEGMYTGQF+YCGKKA L+VGNVLP+RSIPEGAV+CNVEH V
Sbjct: 61  VTFRYPFRYNHQKELFVAAEGMYTGQFVYCGKKATLMVGNVLPLRSIPEGAVVCNVEHKV 120

Query: 121 GDRGVFARCSGDYAIVISHNPENDTSRIKLPSGSKKIVPSGCRAMVGQVAGGGRTEKPLL 180
           GDRGVFARCSG YAIVISHNP+N T+RIKLPSGSKKIVPSGCR M+GQVAGGGRTEKP+L
Sbjct: 121 GDRGVFARCSGAYAIVISHNPDNGTTRIKLPSGSKKIVPSGCRRMIGQVAGGGRTEKPML 180

Query: 181 KAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVGLIAA 240
           KAGNAYHK+RVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTV RDAPPGQKVGLIA 
Sbjct: 181 KAGNAYHKYRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVARDAPPGQKVGLIAG 240

Query: 241 RRTGRLRGQAAASAAKADKA 261
           RRTGRLRGQAAA+AAKADKA
Sbjct: 241 RRTGRLRGQAAATAAKADKA 260

[Close]

BLAST of Sed0019438 vs. ExPASy Swiss-Prot
Match: Q4PSL7 (60S ribosomal protein L8-2 OS=Arabidopsis thaliana OX=3702 GN=RPL8B PE=2 SV=3)

HSP 1 Score: 458.4 bits (1178), Expect = 5.5e-128
Identity = 220/259 (84.94%), Postives = 238/259 (91.89%), Query Frame = 0


Query: 1   MGRVIRAQRKG-AGSVFKSHTHHRKGPARFRSLDFGERNGYLKGVVNEIVHDPGRGAPLA 60
           MGRVIRAQRKG AGSVFKSHTHHRKGPA+FRSLD+GERNGYLKG+V EI+HDPGRGAPLA
Sbjct: 1   MGRVIRAQRKGAAGSVFKSHTHHRKGPAKFRSLDYGERNGYLKGLVTEIIHDPGRGAPLA 60

Query: 61  RVSFRHPFRYKKQNELFVAAEGMYTGQFIYCGKKANLVVGNVLPVRSIPEGAVICNVEHH 120
           RV+FRHPFRY KQ ELFVAAEGMYTGQ++YCGKKANL+VGNVLP+ SIPEGAVICNVE H
Sbjct: 61  RVAFRHPFRYMKQKELFVAAEGMYTGQYLYCGKKANLMVGNVLPLGSIPEGAVICNVELH 120

Query: 121 VGDRGVFARCSGDYAIVISHNPENDTSRIKLPSGSKKIVPSGCRAMVGQVAGGGRTEKPL 180
           VGDRG  AR SGDYAIVI+HNPE++T+R+KLPSGSKKI+PS CRAM+GQVAGGGRTEKPL
Sbjct: 121 VGDRGALARASGDYAIVIAHNPESNTTRVKLPSGSKKILPSACRAMIGQVAGGGRTEKPL 180

Query: 181 LKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVGLIA 240
           LKAGNAYHK++ KRNCWP VRGVAMNPVEHPHGGGNHQHIGHASTVRRD   G KVG IA
Sbjct: 181 LKAGNAYHKYKAKRNCWPVVRGVAMNPVEHPHGGGNHQHIGHASTVRRDKSAGAKVGQIA 240

Query: 241 ARRTGRLRGQAAASAAKAD 259
           ARRTGR RG AA  AAKAD
Sbjct: 241 ARRTGRRRGAAATLAAKAD 259

[Close]

BLAST of Sed0019438 vs. ExPASy TrEMBL
Match: A0A0A0KKM7 (Ribosomal_L2_C domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G505310 PE=3 SV=1)

HSP 1 Score: 527.3 bits (1357), Expect = 3.6e-146
Identity = 253/260 (97.31%), Postives = 259/260 (99.62%), Query Frame = 0


Query: 1   MGRVIRAQRKGAGSVFKSHTHHRKGPARFRSLDFGERNGYLKGVVNEIVHDPGRGAPLAR 60
           MGRVIRAQRKGAGSVFKSHTHHRKGPARFRSLDFGERNGYLKGVV EI+HDPGRGAPLAR
Sbjct: 1   MGRVIRAQRKGAGSVFKSHTHHRKGPARFRSLDFGERNGYLKGVVTEIIHDPGRGAPLAR 60

Query: 61  VSFRHPFRYKKQNELFVAAEGMYTGQFIYCGKKANLVVGNVLPVRSIPEGAVICNVEHHV 120
           VSFRHPFRYKKQNELFVAAEGMYTGQF+YCGKKANLVVGNVLPVRSIPEGAV+CNVEHHV
Sbjct: 61  VSFRHPFRYKKQNELFVAAEGMYTGQFVYCGKKANLVVGNVLPVRSIPEGAVVCNVEHHV 120

Query: 121 GDRGVFARCSGDYAIVISHNPENDTSRIKLPSGSKKIVPSGCRAMVGQVAGGGRTEKPLL 180
           GDRGVFARCSGDYAIVISHNP+NDTSRIKLPSG+KKIVPSGCRAMVGQVAGGGRTEKPLL
Sbjct: 121 GDRGVFARCSGDYAIVISHNPDNDTSRIKLPSGAKKIVPSGCRAMVGQVAGGGRTEKPLL 180

Query: 181 KAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVGLIAA 240
           KAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVGLIAA
Sbjct: 181 KAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVGLIAA 240

Query: 241 RRTGRLRGQAAASAAKADKA 261
           RRTGRLRGQAAA+AAKADKA
Sbjct: 241 RRTGRLRGQAAATAAKADKA 260

[Close]

BLAST of Sed0019438 vs. ExPASy TrEMBL
Match: A0A5D3CL65 (60S ribosomal protein L8-3 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold255G001430 PE=3 SV=1)

HSP 1 Score: 525.8 bits (1353), Expect = 1.0e-145
Identity = 251/260 (96.54%), Postives = 259/260 (99.62%), Query Frame = 0


Query: 1   MGRVIRAQRKGAGSVFKSHTHHRKGPARFRSLDFGERNGYLKGVVNEIVHDPGRGAPLAR 60
           MGRVIRAQRKGAGSVF+SHTHHRKGPARFRSLDFGERNGYLKGVV EI+HDPGRGAPLAR
Sbjct: 1   MGRVIRAQRKGAGSVFRSHTHHRKGPARFRSLDFGERNGYLKGVVTEIIHDPGRGAPLAR 60

Query: 61  VSFRHPFRYKKQNELFVAAEGMYTGQFIYCGKKANLVVGNVLPVRSIPEGAVICNVEHHV 120
           VSFRHPFRYKKQNELFVAAEGMYTGQF+YCGKKANLVVGNVLP+RSIPEGAV+CNVEHHV
Sbjct: 61  VSFRHPFRYKKQNELFVAAEGMYTGQFVYCGKKANLVVGNVLPIRSIPEGAVVCNVEHHV 120

Query: 121 GDRGVFARCSGDYAIVISHNPENDTSRIKLPSGSKKIVPSGCRAMVGQVAGGGRTEKPLL 180
           GDRGVFARCSGDYAIVISHNP+NDTSRIKLPSG+KKIVPSGCRAMVGQVAGGGRTEKPLL
Sbjct: 121 GDRGVFARCSGDYAIVISHNPDNDTSRIKLPSGAKKIVPSGCRAMVGQVAGGGRTEKPLL 180

Query: 181 KAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVGLIAA 240
           KAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVGLIAA
Sbjct: 181 KAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVGLIAA 240

Query: 241 RRTGRLRGQAAASAAKADKA 261
           RRTGRLRGQAAA+AAKADKA
Sbjct: 241 RRTGRLRGQAAATAAKADKA 260

[Close]

BLAST of Sed0019438 vs. ExPASy TrEMBL
Match: A0A1S3B1I8 (60S ribosomal protein L8-3 OS=Cucumis melo OX=3656 GN=LOC103485115 PE=3 SV=1)

HSP 1 Score: 525.8 bits (1353), Expect = 1.0e-145
Identity = 251/260 (96.54%), Postives = 259/260 (99.62%), Query Frame = 0


Query: 1   MGRVIRAQRKGAGSVFKSHTHHRKGPARFRSLDFGERNGYLKGVVNEIVHDPGRGAPLAR 60
           MGRVIRAQRKGAGSVF+SHTHHRKGPARFRSLDFGERNGYLKGVV EI+HDPGRGAPLAR
Sbjct: 1   MGRVIRAQRKGAGSVFRSHTHHRKGPARFRSLDFGERNGYLKGVVTEIIHDPGRGAPLAR 60

Query: 61  VSFRHPFRYKKQNELFVAAEGMYTGQFIYCGKKANLVVGNVLPVRSIPEGAVICNVEHHV 120
           VSFRHPFRYKKQNELFVAAEGMYTGQF+YCGKKANLVVGNVLP+RSIPEGAV+CNVEHHV
Sbjct: 61  VSFRHPFRYKKQNELFVAAEGMYTGQFVYCGKKANLVVGNVLPIRSIPEGAVVCNVEHHV 120

Query: 121 GDRGVFARCSGDYAIVISHNPENDTSRIKLPSGSKKIVPSGCRAMVGQVAGGGRTEKPLL 180
           GDRGVFARCSGDYAIVISHNP+NDTSRIKLPSG+KKIVPSGCRAMVGQVAGGGRTEKPLL
Sbjct: 121 GDRGVFARCSGDYAIVISHNPDNDTSRIKLPSGAKKIVPSGCRAMVGQVAGGGRTEKPLL 180

Query: 181 KAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVGLIAA 240
           KAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVGLIAA
Sbjct: 181 KAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVGLIAA 240

Query: 241 RRTGRLRGQAAASAAKADKA 261
           RRTGRLRGQAAA+AAKADKA
Sbjct: 241 RRTGRLRGQAAATAAKADKA 260

[Close]

BLAST of Sed0019438 vs. ExPASy TrEMBL
Match: A0A6J1BUD7 (60S ribosomal protein L8 OS=Momordica charantia OX=3673 GN=LOC111005865 PE=3 SV=1)

HSP 1 Score: 524.6 bits (1350), Expect = 2.3e-145
Identity = 250/260 (96.15%), Postives = 259/260 (99.62%), Query Frame = 0


Query: 1   MGRVIRAQRKGAGSVFKSHTHHRKGPARFRSLDFGERNGYLKGVVNEIVHDPGRGAPLAR 60
           MGRVIRAQRKGAGSVFKSHTHHRKGPARFRSLDFGERNGYLKGV+ EIVHDPGRGAPLAR
Sbjct: 1   MGRVIRAQRKGAGSVFKSHTHHRKGPARFRSLDFGERNGYLKGVITEIVHDPGRGAPLAR 60

Query: 61  VSFRHPFRYKKQNELFVAAEGMYTGQFIYCGKKANLVVGNVLPVRSIPEGAVICNVEHHV 120
           V+FRHPFRYKKQNELFVAAEGMYTGQF+YCGKKANL+VGNVLP+RSIPEGAV+CNVEHHV
Sbjct: 61  VTFRHPFRYKKQNELFVAAEGMYTGQFVYCGKKANLMVGNVLPLRSIPEGAVVCNVEHHV 120

Query: 121 GDRGVFARCSGDYAIVISHNPENDTSRIKLPSGSKKIVPSGCRAMVGQVAGGGRTEKPLL 180
           GDRGVFARCSGDYAIVISHNP+NDTSRIKLPSGSKK+VPSGCRAMVGQVAGGGRTEKPLL
Sbjct: 121 GDRGVFARCSGDYAIVISHNPDNDTSRIKLPSGSKKVVPSGCRAMVGQVAGGGRTEKPLL 180

Query: 181 KAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVGLIAA 240
           KAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVGLIAA
Sbjct: 181 KAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVGLIAA 240

Query: 241 RRTGRLRGQAAASAAKADKA 261
           RRTGRLRGQAAA+AAKADKA
Sbjct: 241 RRTGRLRGQAAATAAKADKA 260

[Close]

BLAST of Sed0019438 vs. ExPASy TrEMBL
Match: A0A6J1KNZ2 (60S ribosomal protein L8-3 OS=Cucurbita maxima OX=3661 GN=LOC111497370 PE=3 SV=1)

HSP 1 Score: 523.9 bits (1348), Expect = 3.9e-145
Identity = 249/260 (95.77%), Postives = 260/260 (100.00%), Query Frame = 0


Query: 1   MGRVIRAQRKGAGSVFKSHTHHRKGPARFRSLDFGERNGYLKGVVNEIVHDPGRGAPLAR 60
           MGRVIRAQRKGAGSVFKSHTHHRKGPARFRSLDFGERNGYLKGVV+EI+HDPGRGAPLAR
Sbjct: 1   MGRVIRAQRKGAGSVFKSHTHHRKGPARFRSLDFGERNGYLKGVVSEIIHDPGRGAPLAR 60

Query: 61  VSFRHPFRYKKQNELFVAAEGMYTGQFIYCGKKANLVVGNVLPVRSIPEGAVICNVEHHV 120
           V+FRHPFRYKKQNELFVAAEGMYTGQF+YCGKKANL+VGNVLP+RSIPEGAV+CNVEHHV
Sbjct: 61  VTFRHPFRYKKQNELFVAAEGMYTGQFVYCGKKANLMVGNVLPLRSIPEGAVVCNVEHHV 120

Query: 121 GDRGVFARCSGDYAIVISHNPENDTSRIKLPSGSKKIVPSGCRAMVGQVAGGGRTEKPLL 180
           GDRGVFARCSGDYAIVISHNP+NDTSRIKLPSGSKK+VPSGCRAMVGQVAGGGRTEKPLL
Sbjct: 121 GDRGVFARCSGDYAIVISHNPDNDTSRIKLPSGSKKVVPSGCRAMVGQVAGGGRTEKPLL 180

Query: 181 KAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVGLIAA 240
           KAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVGLIAA
Sbjct: 181 KAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVGLIAA 240

Query: 241 RRTGRLRGQAAASAAKADKA 261
           RRTGRLRGQAAA+A+KADKA
Sbjct: 241 RRTGRLRGQAAATASKADKA 260

[Close]

BLAST of Sed0019438 vs. TAIR 10
Match: AT4G36130.1 (Ribosomal protein L2 family )

HSP 1 Score: 505.4 bits (1300), Expect = 2.8e-143
Identity = 240/258 (93.02%), Postives = 253/258 (98.06%), Query Frame = 0


Query: 1   MGRVIRAQRKGAGSVFKSHTHHRKGPARFRSLDFGERNGYLKGVVNEIVHDPGRGAPLAR 60
           MGRVIRAQRKGAGSVFKSHTHHRKGPA+FRSLDFGERNGYLKGVV EI+HDPGRGAPLAR
Sbjct: 1   MGRVIRAQRKGAGSVFKSHTHHRKGPAKFRSLDFGERNGYLKGVVTEIIHDPGRGAPLAR 60

Query: 61  VSFRHPFRYKKQNELFVAAEGMYTGQFIYCGKKANLVVGNVLPVRSIPEGAVICNVEHHV 120
           V+FRHPFR+KKQ ELFVAAEGMYTGQF+YCGKKA LVVGNVLP+RSIPEGAVICNVEHHV
Sbjct: 61  VAFRHPFRFKKQKELFVAAEGMYTGQFLYCGKKATLVVGNVLPLRSIPEGAVICNVEHHV 120

Query: 121 GDRGVFARCSGDYAIVISHNPENDTSRIKLPSGSKKIVPSGCRAMVGQVAGGGRTEKPLL 180
           GDRGVFAR SGDYAIVI+HNP+NDTSRIKLPSGSKKIVPSGCRAM+GQVAGGGRTEKP+L
Sbjct: 121 GDRGVFARASGDYAIVIAHNPDNDTSRIKLPSGSKKIVPSGCRAMIGQVAGGGRTEKPML 180

Query: 181 KAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVGLIAA 240
           KAGNAYHK+RVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPG+KVGLIAA
Sbjct: 181 KAGNAYHKYRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGKKVGLIAA 240

Query: 241 RRTGRLRGQAAASAAKAD 259
           RRTGRLRGQAAA A+KAD
Sbjct: 241 RRTGRLRGQAAALASKAD 258

[Close]

BLAST of Sed0019438 vs. TAIR 10
Match: AT2G18020.1 (Ribosomal protein L2 family )

HSP 1 Score: 500.7 bits (1288), Expect = 6.9e-142
Identity = 238/258 (92.25%), Postives = 252/258 (97.67%), Query Frame = 0


Query: 1   MGRVIRAQRKGAGSVFKSHTHHRKGPARFRSLDFGERNGYLKGVVNEIVHDPGRGAPLAR 60
           MGRVIRAQRKGAGSVFKSHTHHRKGPA+FRSLDFGERNGYLKGVV EI+HDPGRGAPLAR
Sbjct: 1   MGRVIRAQRKGAGSVFKSHTHHRKGPAKFRSLDFGERNGYLKGVVTEIIHDPGRGAPLAR 60

Query: 61  VSFRHPFRYKKQNELFVAAEGMYTGQFIYCGKKANLVVGNVLPVRSIPEGAVICNVEHHV 120
           V+FRHPFR+KKQ ELFVAAEGMYTGQF+YCGKKA LVVGNVLP+RSIPEGAV+CNVEHHV
Sbjct: 61  VTFRHPFRFKKQKELFVAAEGMYTGQFLYCGKKATLVVGNVLPLRSIPEGAVVCNVEHHV 120

Query: 121 GDRGVFARCSGDYAIVISHNPENDTSRIKLPSGSKKIVPSGCRAMVGQVAGGGRTEKPLL 180
           GDRGV AR SGDYAIVI+HNP++DT+RIKLPSGSKKIVPSGCRAM+GQVAGGGRTEKP+L
Sbjct: 121 GDRGVLARASGDYAIVIAHNPDSDTTRIKLPSGSKKIVPSGCRAMIGQVAGGGRTEKPML 180

Query: 181 KAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVGLIAA 240
           KAGNAYHK+RVKRN WPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVGLIAA
Sbjct: 181 KAGNAYHKYRVKRNSWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVGLIAA 240

Query: 241 RRTGRLRGQAAASAAKAD 259
           RRTGRLRGQAAASAAKAD
Sbjct: 241 RRTGRLRGQAAASAAKAD 258

[Close]

BLAST of Sed0019438 vs. TAIR 10
Match: AT3G51190.1 (Ribosomal protein L2 family )

HSP 1 Score: 458.4 bits (1178), Expect = 3.9e-129
Identity = 220/259 (84.94%), Postives = 238/259 (91.89%), Query Frame = 0


Query: 1   MGRVIRAQRKG-AGSVFKSHTHHRKGPARFRSLDFGERNGYLKGVVNEIVHDPGRGAPLA 60
           MGRVIRAQRKG AGSVFKSHTHHRKGPA+FRSLD+GERNGYLKG+V EI+HDPGRGAPLA
Sbjct: 1   MGRVIRAQRKGAAGSVFKSHTHHRKGPAKFRSLDYGERNGYLKGLVTEIIHDPGRGAPLA 60

Query: 61  RVSFRHPFRYKKQNELFVAAEGMYTGQFIYCGKKANLVVGNVLPVRSIPEGAVICNVEHH 120
           RV+FRHPFRY KQ ELFVAAEGMYTGQ++YCGKKANL+VGNVLP+ SIPEGAVICNVE H
Sbjct: 61  RVAFRHPFRYMKQKELFVAAEGMYTGQYLYCGKKANLMVGNVLPLGSIPEGAVICNVELH 120

Query: 121 VGDRGVFARCSGDYAIVISHNPENDTSRIKLPSGSKKIVPSGCRAMVGQVAGGGRTEKPL 180
           VGDRG  AR SGDYAIVI+HNPE++T+R+KLPSGSKKI+PS CRAM+GQVAGGGRTEKPL
Sbjct: 121 VGDRGALARASGDYAIVIAHNPESNTTRVKLPSGSKKILPSACRAMIGQVAGGGRTEKPL 180

Query: 181 LKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVGLIA 240
           LKAGNAYHK++ KRNCWP VRGVAMNPVEHPHGGGNHQHIGHASTVRRD   G KVG IA
Sbjct: 181 LKAGNAYHKYKAKRNCWPVVRGVAMNPVEHPHGGGNHQHIGHASTVRRDKSAGAKVGQIA 240

Query: 241 ARRTGRLRGQAAASAAKAD 259
           ARRTGR RG AA  AAKAD
Sbjct: 241 ARRTGRRRGAAATLAAKAD 259

[Close]

BLAST of Sed0019438 vs. TAIR 10
Match: ATCG00830.1 (ribosomal protein L2 )

HSP 1 Score: 105.1 bits (261), Expect = 8.4e-23
Identity = 68/215 (31.63%), Postives = 103/215 (47.91%), Query Frame = 0


Query: 4   VIRAQRKGAGSVFKSHTHHRKGPARFRSLDFGERNGYLKGVVNEIVHDPGRGAPLARVSF 63
           +I A+ +G G        H++    +R +DF      + G +  I +DP R A +  + +
Sbjct: 46  IITARHRGGG--------HKR---LYRKIDFRRNAKDIYGRIVTIEYDPNRNAYICLIHY 105

Query: 64  RHPFRYKKQNELFVAAEGMYTGQFIYCGKKANLVVGNVLPVRSIPEGAVICNVEHHVGDR 123
                   +    +   G   G  I  G +  + +GN LP+  +P G  I N+E  +G  
Sbjct: 106 G-----DGEKRYILHPRGAIIGDTIVSGTEVPIKMGNALPLTDMPLGTAIHNIEITLGRG 165

Query: 124 GVFARCSGDYAIVISHNPENDTSRIKLPSGSKKIVPSGCRAMVGQVAGGGRTEKPLLKAG 183
           G  AR +G  A +I+   E  ++ +KLPSG  +++   C A VGQV   G  +K L +AG
Sbjct: 166 GQLARAAGAVAKLIA--KEGKSATLKLPSGEVRLISKNCSATVGQVGNVGVNQKSLGRAG 225

Query: 184 NAYHKFRVKRNCW----PKVRGVAMNPVEHPHGGG 215
           +          CW    P VRGV MNPV+HPHGGG
Sbjct: 226 S---------KCWLGKRPVVRGVVMNPVDHPHGGG 233

[Close]

BLAST of Sed0019438 vs. TAIR 10
Match: ATCG01310.1 (ribosomal protein L2 )

HSP 1 Score: 105.1 bits (261), Expect = 8.4e-23
Identity = 68/215 (31.63%), Postives = 103/215 (47.91%), Query Frame = 0


Query: 4   VIRAQRKGAGSVFKSHTHHRKGPARFRSLDFGERNGYLKGVVNEIVHDPGRGAPLARVSF 63
           +I A+ +G G        H++    +R +DF      + G +  I +DP R A +  + +
Sbjct: 46  IITARHRGGG--------HKR---LYRKIDFRRNAKDIYGRIVTIEYDPNRNAYICLIHY 105

Query: 64  RHPFRYKKQNELFVAAEGMYTGQFIYCGKKANLVVGNVLPVRSIPEGAVICNVEHHVGDR 123
                   +    +   G   G  I  G +  + +GN LP+  +P G  I N+E  +G  
Sbjct: 106 G-----DGEKRYILHPRGAIIGDTIVSGTEVPIKMGNALPLTDMPLGTAIHNIEITLGRG 165

Query: 124 GVFARCSGDYAIVISHNPENDTSRIKLPSGSKKIVPSGCRAMVGQVAGGGRTEKPLLKAG 183
           G  AR +G  A +I+   E  ++ +KLPSG  +++   C A VGQV   G  +K L +AG
Sbjct: 166 GQLARAAGAVAKLIA--KEGKSATLKLPSGEVRLISKNCSATVGQVGNVGVNQKSLGRAG 225

Query: 184 NAYHKFRVKRNCW----PKVRGVAMNPVEHPHGGG 215
           +          CW    P VRGV MNPV+HPHGGG
Sbjct: 226 S---------KCWLGKRPVVRGVVMNPVDHPHGGG 233

The following BLAST results are available for this feature:

BLAST of Sed0019438 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004134871.1	7.3e-146	97.31	60S ribosomal protein L8-3 [Cucumis sativus] >XP_038883668.1 60S ribosomal prote...	[more]
XP_008440805.1	2.1e-145	96.54	PREDICTED: 60S ribosomal protein L8-3 [Cucumis melo] >KAA0025686.1 60S ribosomal...	[more]
XP_022133211.1	4.8e-145	96.15	60S ribosomal protein L8 [Momordica charantia]	[more]
XP_023003927.1	8.1e-145	95.77	60S ribosomal protein L8-3 [Cucurbita maxima] >XP_023518952.1 60S ribosomal prot...	[more]
XP_022963335.1	1.8e-144	95.38	60S ribosomal protein L8-3 [Cucurbita moschata]	[more]

BLAST of Sed0019438 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q42064	3.9e-142	93.02	60S ribosomal protein L8-3 OS=Arabidopsis thaliana OX=3702 GN=RPL8C PE=2 SV=2	[more]
P29766	1.9e-141	90.77	60S ribosomal protein L8 OS=Solanum lycopersicum OX=4081 GN=RPL8 PE=2 SV=1	[more]
P46286	9.7e-141	92.25	60S ribosomal protein L8-1 OS=Arabidopsis thaliana OX=3702 GN=RPL8A PE=1 SV=2	[more]
P25998	1.5e-138	89.62	60S ribosomal protein L8 OS=Nicotiana tabacum OX=4097 GN=RPL8 PE=2 SV=1	[more]
Q4PSL7	5.5e-128	84.94	60S ribosomal protein L8-2 OS=Arabidopsis thaliana OX=3702 GN=RPL8B PE=2 SV=3	[more]

BLAST of Sed0019438 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KKM7	3.6e-146	97.31	Ribosomal_L2_C domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G505...	[more]
A0A5D3CL65	1.0e-145	96.54	60S ribosomal protein L8-3 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaff...	[more]
A0A1S3B1I8	1.0e-145	96.54	60S ribosomal protein L8-3 OS=Cucumis melo OX=3656 GN=LOC103485115 PE=3 SV=1	[more]
A0A6J1BUD7	2.3e-145	96.15	60S ribosomal protein L8 OS=Momordica charantia OX=3673 GN=LOC111005865 PE=3 SV=...	[more]
A0A6J1KNZ2	3.9e-145	95.77	60S ribosomal protein L8-3 OS=Cucurbita maxima OX=3661 GN=LOC111497370 PE=3 SV=1	[more]

BLAST of Sed0019438 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G36130.1	2.8e-143	93.02	Ribosomal protein L2 family	[more]
AT2G18020.1	6.9e-142	92.25	Ribosomal protein L2 family	[more]
AT3G51190.1	3.9e-129	84.94	Ribosomal protein L2 family	[more]
ATCG00830.1	8.4e-23	31.63	ribosomal protein L2	[more]
ATCG01310.1	8.4e-23	31.63	ribosomal protein L2	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR022669	Ribosomal protein L2, C-terminal	SMART	SM01382	Ribosomal_L2_C_2	coord: 96..231 e-value: 4.0E-67 score: 239.0
IPR022669	Ribosomal protein L2, C-terminal	PFAM	PF03947	Ribosomal_L2_C	coord: 98..224 e-value: 1.2E-44 score: 151.4
IPR002171	Ribosomal protein L2	SMART	SM01383	Ribosomal_L2_2	coord: 11..90 e-value: 1.3E-32 score: 124.4
IPR002171	Ribosomal protein L2	PIRSF	PIRSF002158	RPL2p_RPL2a_RPL8e_RPL2o	coord: 1..254 e-value: 6.6E-69 score: 230.1
IPR002171	Ribosomal protein L2	PANTHER	PTHR13691	RIBOSOMAL PROTEIN L2	coord: 1..260
IPR022666	Ribosomal Proteins L2, RNA binding domain	PFAM	PF00181	Ribosomal_L2	coord: 13..90 e-value: 3.0E-17 score: 62.3
IPR014726	Ribosomal protein L2, domain 3	GENE3D	4.10.950.10	Ribosomal protein L2, domain 3	coord: 170..247 e-value: 1.9E-43 score: 148.7
None	No IPR available	GENE3D	2.40.50.140		coord: 1..86 e-value: 3.4E-40 score: 138.0
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..24
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 210..230
None	No IPR available	PANTHER	PTHR13691:SF48	60S RIBOSOMAL PROTEIN L8	coord: 1..260
IPR014722	Ribosomal protein L2, domain 2	GENE3D	2.30.30.30		coord: 90..169 e-value: 1.4E-25 score: 90.9
IPR022671	Ribosomal protein L2, conserved site	PROSITE	PS00467	RIBOSOMAL_L2	coord: 197..208
IPR012340	Nucleic acid-binding, OB-fold	SUPERFAMILY	50249	Nucleic acid-binding proteins	coord: 1..97
IPR008991	Translation protein SH3-like domain superfamily	SUPERFAMILY	50104	Translation proteins SH3-like domain	coord: 99..246

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0019438.1	Sed0019438.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0002181	cytoplasmic translation
biological_process	GO:0006412	translation
cellular_component	GO:0022625	cytosolic large ribosomal subunit
cellular_component	GO:0005840	ribosome
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0003735	structural constituent of ribosome