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Sed0019436 (gene) Chayote v1
Overview
Sequences
The following sequences are available for this feature:
Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.ATGAATGAAAACGTGACTGAATTGGTCCTGGTCACTCTTCGGGACGGAATGGAAGAAGGGAGGAGATTCTCGAACGAGGAAAAGGATCCAATGACTTTGAAAGAATTGAACGAGGAGCCGTATGAGGTGAAAATCTCATGTACGGTTCTGTCGAGTGGCAGTAAGGGTGACTTATCTGTCAACTTTTCCACTATCACCCCTAAAAACCAAACTCTGCCTTACGTAAAGTTGCCAGAGTACGCTTAACCTCGGATTTGAAATCACTGCTTATATACCTGGTATTGGCCATAATTTACAAGAACATTCTGTAGTCTTAGTAAGAGGGGGAAGGGTTAAGGATTTACCTGGTGTGAGATATCACATTGTTCGAGGAACCCTAGATGCTGTCGGAGTAAAGGATCGTCAACAAGGGCGTTCTAGTGCGTTGTAGATTCTTATCCAAGACTTGTATCATTTGATGATGCCATGTGAATCGCTAGAAACATGTGAAGTGTATGGCTAACCCAATAACGAAAGTTCTGTAAGGGAACTTGAGCAGGCTACCATGAGACAAACAAAAGATCTTCTTTCTAAAGAGATCTGATTCTGGAACTATTATATGTCCAAGGTCCAATATTGAAATAATTTCAGAGGTTTTTCTTGACTTTGTCCGTGTCAACAAACAATCTGAAATGCCTGACTTTTTTAGAACAGGTCCGAGTCAAATAGTAATGATTCGAAGCACCTCTTTTACACTATTTCGGAAACCCAAGGACTCAATCGTATGGATATGTAAAATACAGGATTTCCAATCCTAGCAGGAAAGGGAGGGAAACGGATACTCAATTTAGTGAGTAAACAGAATTCCATACTGATCTCATAGATACATATAGAATTCTGTGGAAAGCCGTATCTGATGAAAGTCGTATGTATGGCTTGGAGGAGATCTTTCATATCTTTCGAGATCCACCCTACAATATGGGGTCAAAAAGCCAAAATAAATGA ATGAATGAAAACGTGACTGAATTGGTCCTGGTCACTCTTCGGGACGGAATGGAAGAAGGGAGGAGATTCTCGAACGAGGAAAAGGATCCAATGACTTTGAAAGAATTGAACGAGGAGCCGTATGAGGTGAAAATCTCATGTACGGTTCTGTCGAGTGGCAGTAAGGGTGACTTATCTAGTACGCTTAACCTCGGATTTGAAATCACTGCTTATATACCTGGTATTGGCCATAATTTACAAGAACATTCTGTAGTCTTAGTAAGAGGGGGAAGGGTTAAGGATTTACCTGGTGTGAGATATCACATTGTTCGAGGAACCCTAGATGCTGTCGGAGTAAAGGATCGTCAACAAGGGCGTTCTAGTGCGTTGATTTCCAATCCTAGCAGGAAAGGGAGGGAAACGGATACTCAATTTAATACATATAGAATTCTGTGGAAAGCCGTATCTGATGAAAGTCGTATGTATGGCTTGGAGGAGATCTTTCATATCTTTCGAGATCCACCCTACAATATGGGGTCAAAAAGCCAAAATAAATGA ATGAATGAAAACGTGACTGAATTGGTCCTGGTCACTCTTCGGGACGGAATGGAAGAAGGGAGGAGATTCTCGAACGAGGAAAAGGATCCAATGACTTTGAAAGAATTGAACGAGGAGCCGTATGAGGTGAAAATCTCATGTACGGTTCTGTCGAGTGGCAGTAAGGGTGACTTATCTAGTACGCTTAACCTCGGATTTGAAATCACTGCTTATATACCTGGTATTGGCCATAATTTACAAGAACATTCTGTAGTCTTAGTAAGAGGGGGAAGGGTTAAGGATTTACCTGGTGTGAGATATCACATTGTTCGAGGAACCCTAGATGCTGTCGGAGTAAAGGATCGTCAACAAGGGCGTTCTAGTGCGTTGATTTCCAATCCTAGCAGGAAAGGGAGGGAAACGGATACTCAATTTAATACATATAGAATTCTGTGGAAAGCCGTATCTGATGAAAGTCGTATGTATGGCTTGGAGGAGATCTTTCATATCTTTCGAGATCCACCCTACAATATGGGGTCAAAAAGCCAAAATAAATGA MNENVTELVLVTLRDGMEEGRRFSNEEKDPMTLKELNEEPYEVKISCTVLSSGSKGDLSSTLNLGFEITAYIPGIGHNLQEHSVVLVRGGRVKDLPGVRYHIVRGTLDAVGVKDRQQGRSSALISNPSRKGRETDTQFNTYRILWKAVSDESRMYGLEEIFHIFRDPPYNMGSKSQNK Homology
BLAST of Sed0019436 vs. NCBI nr
Match: XP_022932068.1 (uncharacterized protein LOC111438394 [Cucurbita moschata] >XP_023520570.1 uncharacterized protein LOC111783982 [Cucurbita pepo subsp. pepo] >XP_023520572.1 uncharacterized protein LOC111783984 [Cucurbita pepo subsp. pepo]) HSP 1 Score: 219.2 bits (557), Expect = 2.9e-53 Identity = 119/143 (83.22%), Postives = 119/143 (83.22%), Query Frame = 0
BLAST of Sed0019436 vs. NCBI nr
Match: XP_038896566.1 (30S ribosomal protein S12, chloroplastic-like [Benincasa hispida]) HSP 1 Score: 209.1 bits (531), Expect = 3.0e-50 Identity = 115/143 (80.42%), Postives = 116/143 (81.12%), Query Frame = 0
BLAST of Sed0019436 vs. NCBI nr
Match: XP_038902483.1 (30S ribosomal protein S12, chloroplastic-like [Benincasa hispida]) HSP 1 Score: 207.2 bits (526), Expect = 1.2e-49 Identity = 115/143 (80.42%), Postives = 116/143 (81.12%), Query Frame = 0
BLAST of Sed0019436 vs. NCBI nr
Match: RWR98291.1 (LOW QUALITY PROTEIN: 30S ribosomal protein S12, chloroplastic [Cinnamomum micranthum f. kanehirae]) HSP 1 Score: 201.4 bits (511), Expect = 6.3e-48 Identity = 109/141 (77.30%), Postives = 113/141 (80.14%), Query Frame = 0
BLAST of Sed0019436 vs. NCBI nr
Match: RWR98012.1 (LOW QUALITY PROTEIN: 30S ribosomal protein S12, chloroplastic [Cinnamomum micranthum f. kanehirae]) HSP 1 Score: 199.9 bits (507), Expect = 1.8e-47 Identity = 111/142 (78.17%), Postives = 114/142 (80.28%), Query Frame = 0
BLAST of Sed0019436 vs. ExPASy Swiss-Prot
Match: A4GYN8 (30S ribosomal protein S12-B, chloroplastic OS=Populus trichocarpa OX=3694 GN=rps12-B PE=3 SV=1) HSP 1 Score: 124.4 bits (311), Expect = 1.3e-27 Identity = 69/102 (67.65%), Postives = 72/102 (70.59%), Query Frame = 0
BLAST of Sed0019436 vs. ExPASy Swiss-Prot
Match: Q1KXY0 (30S ribosomal protein S12, chloroplastic OS=Helianthus annuus OX=4232 GN=rps12-A PE=3 SV=1) HSP 1 Score: 120.9 bits (302), Expect = 1.4e-26 Identity = 59/62 (95.16%), Postives = 59/62 (95.16%), Query Frame = 0
BLAST of Sed0019436 vs. ExPASy Swiss-Prot
Match: Q332V3 (30S ribosomal protein S12, chloroplastic OS=Lactuca sativa OX=4236 GN=rps12-A PE=3 SV=1) HSP 1 Score: 120.9 bits (302), Expect = 1.4e-26 Identity = 59/62 (95.16%), Postives = 59/62 (95.16%), Query Frame = 0
BLAST of Sed0019436 vs. ExPASy Swiss-Prot
Match: Q0G9J5 (30S ribosomal protein S12, chloroplastic OS=Liriodendron tulipifera OX=3415 GN=rps12-A PE=3 SV=1) HSP 1 Score: 120.9 bits (302), Expect = 1.4e-26 Identity = 59/62 (95.16%), Postives = 59/62 (95.16%), Query Frame = 0
BLAST of Sed0019436 vs. ExPASy Swiss-Prot
Match: A4QJV5 (30S ribosomal protein S12-A, chloroplastic OS=Olimarabidopsis pumila OX=74718 GN=rps12-A PE=3 SV=1) HSP 1 Score: 120.2 bits (300), Expect = 2.4e-26 Identity = 58/66 (87.88%), Postives = 59/66 (89.39%), Query Frame = 0
BLAST of Sed0019436 vs. ExPASy TrEMBL
Match: A0A6J1F0L1 (uncharacterized protein LOC111438394 OS=Cucurbita moschata OX=3662 GN=LOC111438394 PE=3 SV=1) HSP 1 Score: 219.2 bits (557), Expect = 1.4e-53 Identity = 119/143 (83.22%), Postives = 119/143 (83.22%), Query Frame = 0
BLAST of Sed0019436 vs. ExPASy TrEMBL
Match: A0A3S3PCQ6 (30S ribosomal protein S12, chloroplastic OS=Cinnamomum micranthum f. kanehirae OX=337451 GN=CKAN_02782100 PE=3 SV=1) HSP 1 Score: 201.4 bits (511), Expect = 3.1e-48 Identity = 109/141 (77.30%), Postives = 113/141 (80.14%), Query Frame = 0
BLAST of Sed0019436 vs. ExPASy TrEMBL
Match: A0A3S3NSS0 (30S ribosomal protein S12, chloroplastic OS=Cinnamomum micranthum f. kanehirae OX=337451 GN=CKAN_02749900 PE=3 SV=1) HSP 1 Score: 199.9 bits (507), Expect = 8.9e-48 Identity = 111/142 (78.17%), Postives = 114/142 (80.28%), Query Frame = 0
BLAST of Sed0019436 vs. ExPASy TrEMBL
Match: A0A443Q433 (30S ribosomal protein S12, chloroplastic OS=Cinnamomum micranthum f. kanehirae OX=337451 GN=CKAN_02724200 PE=3 SV=1) HSP 1 Score: 196.8 bits (499), Expect = 7.5e-47 Identity = 106/140 (75.71%), Postives = 112/140 (80.00%), Query Frame = 0
BLAST of Sed0019436 vs. ExPASy TrEMBL
Match: A0A3S4Q358 (30S ribosomal protein S12, chloroplastic OS=Cinnamomum micranthum f. kanehirae OX=337451 GN=CKAN_02776600 PE=3 SV=1) HSP 1 Score: 191.4 bits (485), Expect = 3.2e-45 Identity = 110/165 (66.67%), Postives = 117/165 (70.91%), Query Frame = 0
BLAST of Sed0019436 vs. TAIR 10
Match: ATCG00065.1 (ribosomal protein S12A ) HSP 1 Score: 120.2 bits (300), Expect = 1.7e-27 Identity = 58/66 (87.88%), Postives = 59/66 (89.39%), Query Frame = 0
BLAST of Sed0019436 vs. TAIR 10
Match: ATCG01230.1 (ribosomal protein S12B ) HSP 1 Score: 120.2 bits (300), Expect = 1.7e-27 Identity = 58/66 (87.88%), Postives = 59/66 (89.39%), Query Frame = 0
BLAST of Sed0019436 vs. TAIR 10
Match: ATCG00905.1 (ribosomal protein S12C ) HSP 1 Score: 120.2 bits (300), Expect = 1.7e-27 Identity = 58/66 (87.88%), Postives = 59/66 (89.39%), Query Frame = 0
BLAST of Sed0019436 vs. TAIR 10
Match: AT2G07675.1 (Ribosomal protein S12/S23 family protein ) HSP 1 Score: 75.1 bits (183), Expect = 6.4e-14 Identity = 33/54 (61.11%), Postives = 42/54 (77.78%), Query Frame = 0
BLAST of Sed0019436 vs. TAIR 10
Match: ATMG00980.1 (Ribosomal protein S12/S23 family protein ) HSP 1 Score: 75.1 bits (183), Expect = 6.4e-14 Identity = 33/54 (61.11%), Postives = 42/54 (77.78%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25 Position : 0 Zoom : x 1
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
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