Sed0019362 (gene) Chayote v1

Overview


Name	Sed0019362
Type	gene
Organism	Sechium edule (Chayote v1)
Description	SNF1-related protein kinase regulatory subunit gamma-1-like
Location	LG05: 44458874 .. 44459209 (+)
RNA-Seq Expression	Sed0019362
Synteny	Sed0019362

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAATCGAATAAAGCGCAGACAGTTGAAGGGGGCCAGGGGGCACTTACCGTGTCGGGCAGAGTTCGAAATAAGCACACCCCAGTCACTAACAAGAGAGATGACACACTGAAGCAGGTGATGAAAACAATGGCAGAAACAAATAGCAGTTACAGCTTTCTAGTCAATAATAATTCACAAGCAACAGGAATACTCACTTTGCGAGATGTTATAACTCAGTTTGCTCCCCCCTGTATGGATTCAACCATTCAAGGGGGTGGCTTTTTTGAATCTGCTCTGGAACAAACTGGGTGTCAGGTTAGAAATGGGACCATAATTTGTAACAAAACATTTTAG

mRNA sequence

ATGGAATCGAATAAAGCGCAGACAGTTGAAGGGGGCCAGGGGGCACTTACCGTGTCGGGCAGAGTTCGAAATAAGCACACCCCAGTCACTAACAAGAGAGATGACACACTGAAGCAGGTGATGAAAACAATGGCAGAAACAAATAGCAGTTACAGCTTTCTAGTCAATAATAATTCACAAGCAACAGGAATACTCACTTTGCGAGATGTTATAACTCAGTTTGCTCCCCCCTGTATGGATTCAACCATTCAAGGGGGTGGCTTTTTTGAATCTGCTCTGGAACAAACTGGGTGTCAGGTTAGAAATGGGACCATAATTTGTAACAAAACATTTTAG

Coding sequence (CDS)

ATGGAATCGAATAAAGCGCAGACAGTTGAAGGGGGCCAGGGGGCACTTACCGTGTCGGGCAGAGTTCGAAATAAGCACACCCCAGTCACTAACAAGAGAGATGACACACTGAAGCAGGTGATGAAAACAATGGCAGAAACAAATAGCAGTTACAGCTTTCTAGTCAATAATAATTCACAAGCAACAGGAATACTCACTTTGCGAGATGTTATAACTCAGTTTGCTCCCCCCTGTATGGATTCAACCATTCAAGGGGGTGGCTTTTTTGAATCTGCTCTGGAACAAACTGGGTGTCAGGTTAGAAATGGGACCATAATTTGTAACAAAACATTTTAG

Protein sequence

MESNKAQTVEGGQGALTVSGRVRNKHTPVTNKRDDTLKQVMKTMAETNSSYSFLVNNNSQATGILTLRDVITQFAPPCMDSTIQGGGFFESALEQTGCQVRNGTIICNKTF

Homology

[Close]

BLAST of Sed0019362 vs. NCBI nr
Match: XP_031737382.1 (SNF1-related protein kinase regulatory subunit gamma-1 [Cucumis sativus])

HSP 1 Score: 182.2 bits (461), Expect = 2.5e-42
Identity = 95/123 (77.24%), Postives = 102/123 (82.93%), Query Frame = 0


Query: 1   MESNKAQ-----TVEGGQGALTVS-------GRVRNKHTPVTNKRDDTLKQVMKTMAETN 60
           ME NK +     TVEG QGALT+S       G++ N HTPVTNKRDDTLKQVMKTM ETN
Sbjct: 334 MEPNKGRVDAKITVEGSQGALTLSGARSLINGKLPNMHTPVTNKRDDTLKQVMKTMVETN 393

Query: 61  SSYSFLVNNNSQATGILTLRDVITQFAPPCMDSTIQGGGFFESALEQTGCQVRNGTIICN 112
           SS+SFLVNN  QATGILTLRD+ITQFAPPCM+STIQGG FFESALEQTGCQVRNGTIICN
Sbjct: 394 SSFSFLVNNLQQATGILTLRDMITQFAPPCMNSTIQGGSFFESALEQTGCQVRNGTIICN 453

[Close]

BLAST of Sed0019362 vs. NCBI nr
Match: XP_016902612.1 (PREDICTED: SNF1-related protein kinase regulatory subunit gamma-1-like [Cucumis melo])

HSP 1 Score: 175.6 bits (444), Expect = 2.3e-40
Identity = 92/123 (74.80%), Postives = 100/123 (81.30%), Query Frame = 0


Query: 1   MESNKAQ-----TVEGGQGALTVSG-------RVRNKHTPVTNKRDDTLKQVMKTMAETN 60
           ME NK +     TVEG QGALT+SG       ++ N HTPVTNKRDDTLKQVMKTM ETN
Sbjct: 277 MEPNKERGDANMTVEGRQGALTLSGERSLINSKLPNMHTPVTNKRDDTLKQVMKTMVETN 336

Query: 61  SSYSFLVNNNSQATGILTLRDVITQFAPPCMDSTIQGGGFFESALEQTGCQVRNGTIICN 112
           SS+SFLVNN  QA GILTLRD+ITQFAPPCM+S IQGG FFESALEQTGCQVRNGTIICN
Sbjct: 337 SSFSFLVNNLQQAMGILTLRDMITQFAPPCMNSAIQGGSFFESALEQTGCQVRNGTIICN 396

[Close]

BLAST of Sed0019362 vs. NCBI nr
Match: KAA0045565.1 (SNF1-related protein kinase regulatory subunit gamma-1-like [Cucumis melo var. makuwa])

HSP 1 Score: 175.6 bits (444), Expect = 2.3e-40
Identity = 92/123 (74.80%), Postives = 100/123 (81.30%), Query Frame = 0


Query: 1   MESNKAQ-----TVEGGQGALTVSG-------RVRNKHTPVTNKRDDTLKQVMKTMAETN 60
           ME NK +     TVEG QGALT+SG       ++ N HTPVTNKRDDTLKQVMKTM ETN
Sbjct: 268 MEPNKERGDANMTVEGRQGALTLSGERSLINSKLPNMHTPVTNKRDDTLKQVMKTMVETN 327

Query: 61  SSYSFLVNNNSQATGILTLRDVITQFAPPCMDSTIQGGGFFESALEQTGCQVRNGTIICN 112
           SS+SFLVNN  QA GILTLRD+ITQFAPPCM+S IQGG FFESALEQTGCQVRNGTIICN
Sbjct: 328 SSFSFLVNNLQQAMGILTLRDMITQFAPPCMNSAIQGGSFFESALEQTGCQVRNGTIICN 387

[Close]

BLAST of Sed0019362 vs. NCBI nr
Match: TYK28828.1 (SNF1-related protein kinase regulatory subunit gamma-1-like [Cucumis melo var. makuwa])

HSP 1 Score: 175.6 bits (444), Expect = 2.3e-40
Identity = 92/123 (74.80%), Postives = 100/123 (81.30%), Query Frame = 0


Query: 1   MESNKAQ-----TVEGGQGALTVSG-------RVRNKHTPVTNKRDDTLKQVMKTMAETN 60
           ME NK +     TVEG QGALT+SG       ++ N HTPVTNKRDDTLKQVMKTM ETN
Sbjct: 275 MEPNKERGDANMTVEGRQGALTLSGERSLINSKLPNMHTPVTNKRDDTLKQVMKTMVETN 334

Query: 61  SSYSFLVNNNSQATGILTLRDVITQFAPPCMDSTIQGGGFFESALEQTGCQVRNGTIICN 112
           SS+SFLVNN  QA GILTLRD+ITQFAPPCM+S IQGG FFESALEQTGCQVRNGTIICN
Sbjct: 335 SSFSFLVNNLQQAMGILTLRDMITQFAPPCMNSAIQGGSFFESALEQTGCQVRNGTIICN 394

[Close]

BLAST of Sed0019362 vs. NCBI nr
Match: XP_023533161.1 (SNF1-related protein kinase regulatory subunit gamma-1-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 172.2 bits (435), Expect = 2.6e-39
Identity = 91/122 (74.59%), Postives = 101/122 (82.79%), Query Frame = 0


Query: 1   MESNKAQ-----TVEGGQGALTVSG-------RVRNKHTPVTNKRDDTLKQVMKTMAETN 60
           MES+K Q     TV+GGQ ALT+S        RV N HTPVT KRDDTLKQVMKTMAETN
Sbjct: 287 MESSKEQADSNPTVKGGQRALTLSSARPLVKCRVPNMHTPVTIKRDDTLKQVMKTMAETN 346

Query: 61  SSYSFLVNNNSQATGILTLRDVITQFAPPCMDSTIQGGGFFESALEQTGCQVRNGTIICN 111
           SS+SFLVN++ QATGILT+ DVITQFAPPCMDSTIQGGGFFESALE TGC+VRNGT+ICN
Sbjct: 347 SSFSFLVNSSHQATGILTMGDVITQFAPPCMDSTIQGGGFFESALEHTGCEVRNGTLICN 406

[Close]

BLAST of Sed0019362 vs. ExPASy TrEMBL
Match: A0A0A0LP97 (CBS domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G248680 PE=4 SV=1)

HSP 1 Score: 182.2 bits (461), Expect = 1.2e-42
Identity = 95/123 (77.24%), Postives = 102/123 (82.93%), Query Frame = 0


Query: 1   MESNKAQ-----TVEGGQGALTVS-------GRVRNKHTPVTNKRDDTLKQVMKTMAETN 60
           ME NK +     TVEG QGALT+S       G++ N HTPVTNKRDDTLKQVMKTM ETN
Sbjct: 1   MEPNKGRVDAKITVEGSQGALTLSGARSLINGKLPNMHTPVTNKRDDTLKQVMKTMVETN 60

Query: 61  SSYSFLVNNNSQATGILTLRDVITQFAPPCMDSTIQGGGFFESALEQTGCQVRNGTIICN 112
           SS+SFLVNN  QATGILTLRD+ITQFAPPCM+STIQGG FFESALEQTGCQVRNGTIICN
Sbjct: 61  SSFSFLVNNLQQATGILTLRDMITQFAPPCMNSTIQGGSFFESALEQTGCQVRNGTIICN 120

[Close]

BLAST of Sed0019362 vs. ExPASy TrEMBL
Match: A0A5D3DZD8 (SNF1-related protein kinase regulatory subunit gamma-1-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold303G00340 PE=4 SV=1)

HSP 1 Score: 175.6 bits (444), Expect = 1.1e-40
Identity = 92/123 (74.80%), Postives = 100/123 (81.30%), Query Frame = 0


Query: 1   MESNKAQ-----TVEGGQGALTVSG-------RVRNKHTPVTNKRDDTLKQVMKTMAETN 60
           ME NK +     TVEG QGALT+SG       ++ N HTPVTNKRDDTLKQVMKTM ETN
Sbjct: 275 MEPNKERGDANMTVEGRQGALTLSGERSLINSKLPNMHTPVTNKRDDTLKQVMKTMVETN 334

Query: 61  SSYSFLVNNNSQATGILTLRDVITQFAPPCMDSTIQGGGFFESALEQTGCQVRNGTIICN 112
           SS+SFLVNN  QA GILTLRD+ITQFAPPCM+S IQGG FFESALEQTGCQVRNGTIICN
Sbjct: 335 SSFSFLVNNLQQAMGILTLRDMITQFAPPCMNSAIQGGSFFESALEQTGCQVRNGTIICN 394

[Close]

BLAST of Sed0019362 vs. ExPASy TrEMBL
Match: A0A5A7TW16 (SNF1-related protein kinase regulatory subunit gamma-1-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold243G00620 PE=4 SV=1)

HSP 1 Score: 175.6 bits (444), Expect = 1.1e-40
Identity = 92/123 (74.80%), Postives = 100/123 (81.30%), Query Frame = 0


Query: 1   MESNKAQ-----TVEGGQGALTVSG-------RVRNKHTPVTNKRDDTLKQVMKTMAETN 60
           ME NK +     TVEG QGALT+SG       ++ N HTPVTNKRDDTLKQVMKTM ETN
Sbjct: 268 MEPNKERGDANMTVEGRQGALTLSGERSLINSKLPNMHTPVTNKRDDTLKQVMKTMVETN 327

Query: 61  SSYSFLVNNNSQATGILTLRDVITQFAPPCMDSTIQGGGFFESALEQTGCQVRNGTIICN 112
           SS+SFLVNN  QA GILTLRD+ITQFAPPCM+S IQGG FFESALEQTGCQVRNGTIICN
Sbjct: 328 SSFSFLVNNLQQAMGILTLRDMITQFAPPCMNSAIQGGSFFESALEQTGCQVRNGTIICN 387

[Close]

BLAST of Sed0019362 vs. ExPASy TrEMBL
Match: A0A1S4E308 (SNF1-related protein kinase regulatory subunit gamma-1-like OS=Cucumis melo OX=3656 GN=LOC103499686 PE=4 SV=1)

HSP 1 Score: 175.6 bits (444), Expect = 1.1e-40
Identity = 92/123 (74.80%), Postives = 100/123 (81.30%), Query Frame = 0


Query: 1   MESNKAQ-----TVEGGQGALTVSG-------RVRNKHTPVTNKRDDTLKQVMKTMAETN 60
           ME NK +     TVEG QGALT+SG       ++ N HTPVTNKRDDTLKQVMKTM ETN
Sbjct: 277 MEPNKERGDANMTVEGRQGALTLSGERSLINSKLPNMHTPVTNKRDDTLKQVMKTMVETN 336

Query: 61  SSYSFLVNNNSQATGILTLRDVITQFAPPCMDSTIQGGGFFESALEQTGCQVRNGTIICN 112
           SS+SFLVNN  QA GILTLRD+ITQFAPPCM+S IQGG FFESALEQTGCQVRNGTIICN
Sbjct: 337 SSFSFLVNNLQQAMGILTLRDMITQFAPPCMNSAIQGGSFFESALEQTGCQVRNGTIICN 396

[Close]

BLAST of Sed0019362 vs. ExPASy TrEMBL
Match: A0A6J1G7U6 (SNF1-related protein kinase regulatory subunit gamma-1-like isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111451533 PE=4 SV=1)

HSP 1 Score: 170.6 bits (431), Expect = 3.6e-39
Identity = 91/121 (75.21%), Postives = 99/121 (81.82%), Query Frame = 0


Query: 1   MESNKAQ-----TVEGGQGALTVSG-------RVRNKHTPVTNKRDDTLKQVMKTMAETN 60
           MES+K Q     TV+GGQ ALT+S        RV N HTPVT KRDDTLKQVMKTMAETN
Sbjct: 287 MESSKEQADSNPTVKGGQRALTLSSARPLVKCRVPNMHTPVTIKRDDTLKQVMKTMAETN 346

Query: 61  SSYSFLVNNNSQATGILTLRDVITQFAPPCMDSTIQGGGFFESALEQTGCQVRNGTIICN 110
           S +SFLVN++ QATGILT+ DVITQFAPPCMDSTIQGGGFFESALE TGCQVRNGT+ICN
Sbjct: 347 SCFSFLVNSSHQATGILTVGDVITQFAPPCMDSTIQGGGFFESALEHTGCQVRNGTLICN 406

The following BLAST results are available for this feature:

BLAST of Sed0019362 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_031737382.1	2.5e-42	77.24	SNF1-related protein kinase regulatory subunit gamma-1 [Cucumis sativus]	[more]
XP_016902612.1	2.3e-40	74.80	PREDICTED: SNF1-related protein kinase regulatory subunit gamma-1-like [Cucumis ...	[more]
KAA0045565.1	2.3e-40	74.80	SNF1-related protein kinase regulatory subunit gamma-1-like [Cucumis melo var. m...	[more]
TYK28828.1	2.3e-40	74.80	SNF1-related protein kinase regulatory subunit gamma-1-like [Cucumis melo var. m...	[more]
XP_023533161.1	2.6e-39	74.59	SNF1-related protein kinase regulatory subunit gamma-1-like [Cucurbita pepo subs...	[more]

BLAST of Sed0019362 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Sed0019362 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LP97	1.2e-42	77.24	CBS domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G248680 PE=4 SV...	[more]
A0A5D3DZD8	1.1e-40	74.80	SNF1-related protein kinase regulatory subunit gamma-1-like OS=Cucumis melo var....	[more]
A0A5A7TW16	1.1e-40	74.80	SNF1-related protein kinase regulatory subunit gamma-1-like OS=Cucumis melo var....	[more]
A0A1S4E308	1.1e-40	74.80	SNF1-related protein kinase regulatory subunit gamma-1-like OS=Cucumis melo OX=3...	[more]
A0A6J1G7U6	3.6e-39	75.21	SNF1-related protein kinase regulatory subunit gamma-1-like isoform X2 OS=Cucurb...	[more]

BLAST of Sed0019362 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000644	CBS domain	PFAM	PF00571	CBS	coord: 32..72 e-value: 2.1E-5 score: 24.9
IPR000644	CBS domain	PROSITE	PS51371	CBS	coord: 23..81 score: 9.800521
None	No IPR available	GENE3D	3.10.580.10		coord: 7..85 e-value: 3.3E-7 score: 32.0
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..32
None	No IPR available	PANTHER	PTHR13780:SF124	OS01G0633400 PROTEIN	coord: 24..109
None	No IPR available	PANTHER	PTHR13780	AMP-ACTIVATED PROTEIN KINASE, GAMMA REGULATORY SUBUNIT	coord: 24..109
None	No IPR available	CDD	cd02205	CBS_pair_SF	coord: 25..71 e-value: 3.4558E-6 score: 40.6908
None	No IPR available	SUPERFAMILY	54631	CBS-domain pair	coord: 24..78

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0019362.1	Sed0019362.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0055085	transmembrane transport
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0022857	transmembrane transporter activity