Sed0019349 (gene) Chayote v1

Overview
NameSed0019349
Typegene
OrganismSechium edule (Chayote v1)
DescriptionE3 ubiquitin-protein ligase HOS1-like
LocationLG01: 69306624 .. 69308631 (-)
RNA-Seq ExpressionSed0019349
SyntenySed0019349
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTACCAGAAAATGCTATGCCATAGGGATAGGAAAAAGTACGAAGAACACGATGACGTTATAGACAATGCTCAAAGCAAATTTAACAGGCGGGAGGACTGGGTGAAAATATTGGTGACTGAAATTTGTTTTCTTTGTATCCGTCAAAACTTTGTGGATAGAATGATCGAGTTACCATGGAATTCGGATGAGGAAAAGCATCTCCACAAGTGCTTGCAAGAGTGGTCCGCTGCCATCCGTCAACGACTATTGGATGTTGCCTCTTTGTGTACTATCTTCAGGTAATCTCTATACTCCCCCATTAGACTTTACAAGTAGTTACACCATTAGAATTGATTATGCAAGGAATATAAATAACAAGATAAGGGATTGCTAGAGGAGTAATGTACACTCGCCAAACTATTTGCTTTTGTTAAAGTTCTTACTCATTAAAACCTTTGGCTCTAGTATTAATTTTTTTTTTTTTTTTTTTTTTTTTTTTTAAAAAAAAACTTCTGTTCTAGTTGGGTCACTTATATTTCTATCATTTTGGGTTTGTCATATAAAGCATGCCAAGGGGCAGCCTCATTGGTAGATGCTTGCGATCTCTAAGCATGCTCTCTTGTAGGTTCCAAGCTTGAAATTCATGAGTGAACTTAAAATCTTTTGTTTTTTTTGGGTCCGAGTATTAGGACAAGCGTGGGTGTCCGTGGGTGTCCTTGGGTAGGTAGTAGGGAAGAAATTTGATTCTCGATTATCAAAAGAAAAAGAGAAGCATGCGTGCTAAATTATCACCTTTTTTTTTCTCTCTCACAAGCCAGTAGTTCCCATCCCATTGCTTTAATCTTGGCGATAAGTATTCTGTATTTTGAAGTGGAGCAATTGTGGATTTCTTCCAAATGATATAATCCATTGAGTGAGTCATTTGATAGGTTGAAAATTTTTATAAGAACATTAATTTTCATAGAAGCTCTTATCTGTTTGTTCAATTCATTTGTTTTGTTCTCTTATTGTCTTCATGCTCTGTCTCAGTGGAACATCAATATGACTTGTTATTTCTTTTCTTCTTTTGCAATATAATCCTTGATTTTAGTTTGGATCTTAATACAGAGAAGAAGCATATTTCATACAAAAAGCATTTCCTAAAGCACGTTTAAGACCTCTAAATCCAAGCCTTCTCATTCTTGTTTGGAAAATTTGAGCTTGTGTTGAATCGTAGTTTTTATCTTGTCTTACTCCCATCTTTAGTGAACTCACCACTTGAACATCTTTTACGTATATTTCTTAAGATTTATGAGTAGGTTGTTACACTACTTTAAGCTTTAGGCCGGTTTTTGTCACTTAGTGAATTTTCAGCACTTCACATCTTTCGCATTTTTATTTCATTTTTTCATTTCTTTGTTTTCAAACATGTTTAAAATATGTAATAGAAGCTCTAGGATTAGTTTTTCATGTTAGAATAGCTTTAGATCTATATTTGGTGTCTCGAGTAAAAATCTCACTTTTACTATTTTTATCCTTGATTGTCTAGTGTCCAAAATTTGTTCTTGAACCTCATTTGATACCAAATTTTATATACACAATCATGAAATTATTCTTGAATAGTTATTTCACCTAATTTGGCCATGATATTATTTTTTACTAATATTTTATGGATTTGGGGTGTTTTTTTACAGCACACTTTCATTGTTTTGGACAAGGAATTGGTTGAATTAAAGGTTTGTGAAGCTATGTATGAGAGGAATTTGCATACTCTTCTTATTCATTCAAGTGAAGTAATATACATATTTATACAAGAAAGTTGTAAACTAACCTCCCTAATAATAGAATGTAAACTAACCTCTCTAATTATAGAATGTAGACTAACTTAATTAAGTTAGAGAAATTAGAGAAATAGAAGGAGAAATAAAAGGGGTAGACTCAACTACCTTGACTTTCTACACTCCCCCTCAAGCTGGACAATATATGCTTCGCATGCTGAGCTTGGATATTAATCCACCAAGACTAGGTCAATGAAGTTCCTTGGTCA

mRNA sequence

ATGTACCAGAAAATGCTATGCCATAGGGATAGGAAAAAGTACGAAGAACACGATGACGTTATAGACAATGCTCAAAGCAAATTTAACAGGCGGGAGGACTGGGTGAAAATATTGGTGACTGAAATTTGTTTTCTTTGTATCCGTCAAAACTTTGTGGATAGAATGATCGAGTTACCATGGAATTCGGATGAGGAAAAGCATCTCCACAAGTGCTTGCAAGAGTGGTCCGCTGCCATCCGTCAACGACTATTGGATGTTGCCTCTTTGTGTACTATCTTCAGCACACTTTCATTGTTTTGGACAAGGAATTGGTTGAATTAAAGGTTTGTGAAGCTATGTATGAGAGGAATTTGCATACTCTTCTTATTCATTCAAGTGAAGTAATATACATATTTATACAAGAAAGTTGTAAACTAACCTCCCTAATAATAGAATGTAAACTAACCTCTCTAATTATAGAATGTAGACTAACTTAATTAAGTTAGAGAAATTAGAGAAATAGAAGGAGAAATAAAAGGGGTAGACTCAACTACCTTGACTTTCTACACTCCCCCTCAAGCTGGACAATATATGCTTCGCATGCTGAGCTTGGATATTAATCCACCAAGACTAGGTCAATGAAGTTCCTTGGTCA

Coding sequence (CDS)

ATGTACCAGAAAATGCTATGCCATAGGGATAGGAAAAAGTACGAAGAACACGATGACGTTATAGACAATGCTCAAAGCAAATTTAACAGGCGGGAGGACTGGGTGAAAATATTGGTGACTGAAATTTGTTTTCTTTGTATCCGTCAAAACTTTGTGGATAGAATGATCGAGTTACCATGGAATTCGGATGAGGAAAAGCATCTCCACAAGTGCTTGCAAGAGTGGTCCGCTGCCATCCGTCAACGACTATTGGATGTTGCCTCTTTGTGTACTATCTTCAGCACACTTTCATTGTTTTGGACAAGGAATTGGTTGAATTAA

Protein sequence

MYQKMLCHRDRKKYEEHDDVIDNAQSKFNRREDWVKILVTEICFLCIRQNFVDRMIELPWNSDEEKHLHKCLQEWSAAIRQRLLDVASLCTIFSTLSLFWTRNWLN
Homology
[Close]
BLAST of Sed0019349 vs. NCBI nr
Match: KAG7036140.1 (E3 ubiquitin-protein ligase HOS1 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 144.8 bits (364), Expect = 4.2e-31
Identity = 68/80 (85.00%), Postives = 71/80 (88.75%), Query Frame = 0 

Query: 1   MYQKMLCH--RDRKKYEEHDDVIDNAQSKFNRREDWVKILVTEICFLCIRQNFVDRMIEL 60
           MYQKMLC+  RDRKKYEE +D  DNAQSKF R EDWVKILVTEICFLCIR+NFVDRMIEL
Sbjct: 566 MYQKMLCNKVRDRKKYEEREDEFDNAQSKFRRWEDWVKILVTEICFLCIRRNFVDRMIEL 625

Query: 61  PWNSDEEKHLHKCLQEWSAA 79
           PWNSDEEKHLHKCL EWS A
Sbjct: 626 PWNSDEEKHLHKCLMEWSTA 645

[Close]
BLAST of Sed0019349 vs. NCBI nr
Match: XP_023522159.1 (E3 ubiquitin-protein ligase HOS1-like, partial [Cucurbita pepo subsp. pepo])

HSP 1 Score: 144.8 bits (364), Expect = 4.2e-31
Identity = 68/80 (85.00%), Postives = 71/80 (88.75%), Query Frame = 0 

Query: 1   MYQKMLCH--RDRKKYEEHDDVIDNAQSKFNRREDWVKILVTEICFLCIRQNFVDRMIEL 60
           MYQKMLC+  RDRKKYEE +D  DNAQSKF R EDWVKILVTEICFLCIR+NFVDRMIEL
Sbjct: 299 MYQKMLCNKVRDRKKYEEREDEFDNAQSKFRRWEDWVKILVTEICFLCIRRNFVDRMIEL 358

Query: 61  PWNSDEEKHLHKCLQEWSAA 79
           PWNSDEEKHLHKCL EWS A
Sbjct: 359 PWNSDEEKHLHKCLMEWSTA 378

[Close]
BLAST of Sed0019349 vs. NCBI nr
Match: XP_023533438.1 (E3 ubiquitin-protein ligase HOS1-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 144.8 bits (364), Expect = 4.2e-31
Identity = 68/80 (85.00%), Postives = 71/80 (88.75%), Query Frame = 0 

Query: 1   MYQKMLCH--RDRKKYEEHDDVIDNAQSKFNRREDWVKILVTEICFLCIRQNFVDRMIEL 60
           MYQKMLC+  RDRKKYEE +D  DNAQSKF R EDWVKILVTEICFLCIR+NFVDRMIEL
Sbjct: 530 MYQKMLCNKVRDRKKYEEREDEFDNAQSKFRRWEDWVKILVTEICFLCIRRNFVDRMIEL 589

Query: 61  PWNSDEEKHLHKCLQEWSAA 79
           PWNSDEEKHLHKCL EWS A
Sbjct: 590 PWNSDEEKHLHKCLMEWSTA 609

[Close]
BLAST of Sed0019349 vs. NCBI nr
Match: XP_022958124.1 (E3 ubiquitin-protein ligase HOS1-like [Cucurbita moschata])

HSP 1 Score: 144.8 bits (364), Expect = 4.2e-31
Identity = 68/80 (85.00%), Postives = 71/80 (88.75%), Query Frame = 0 

Query: 1   MYQKMLCH--RDRKKYEEHDDVIDNAQSKFNRREDWVKILVTEICFLCIRQNFVDRMIEL 60
           MYQKMLC+  RDRKKYEE +D  DNAQSKF R EDWVKILVTEICFLCIR+NFVDRMIEL
Sbjct: 530 MYQKMLCNKVRDRKKYEEREDEFDNAQSKFRRWEDWVKILVTEICFLCIRRNFVDRMIEL 589

Query: 61  PWNSDEEKHLHKCLQEWSAA 79
           PWNSDEEKHLHKCL EWS A
Sbjct: 590 PWNSDEEKHLHKCLMEWSTA 609

[Close]
BLAST of Sed0019349 vs. NCBI nr
Match: XP_022995656.1 (E3 ubiquitin-protein ligase HOS1-like [Cucurbita maxima])

HSP 1 Score: 143.3 bits (360), Expect = 1.2e-30
Identity = 67/80 (83.75%), Postives = 71/80 (88.75%), Query Frame = 0 

Query: 1   MYQKMLCH--RDRKKYEEHDDVIDNAQSKFNRREDWVKILVTEICFLCIRQNFVDRMIEL 60
           MYQK+LC+  RDRKKYEE +D  DNAQSKF R EDWVKILVTEICFLCIR+NFVDRMIEL
Sbjct: 530 MYQKILCNKVRDRKKYEEREDEFDNAQSKFRRWEDWVKILVTEICFLCIRRNFVDRMIEL 589

Query: 61  PWNSDEEKHLHKCLQEWSAA 79
           PWNSDEEKHLHKCL EWS A
Sbjct: 590 PWNSDEEKHLHKCLMEWSTA 609

[Close]
BLAST of Sed0019349 vs. ExPASy Swiss-Prot
Match: Q84JU6 (E3 ubiquitin-protein ligase HOS1 OS=Arabidopsis thaliana OX=3702 GN=HOS1 PE=1 SV=1)

HSP 1 Score: 67.4 bits (163), Expect = 1.1e-10
Identity = 32/61 (52.46%), Postives = 42/61 (68.85%), Query Frame = 0 

Query: 33  DWVKILVTEICFLCIRQNFVDRMIELPWNSDEEKHLHKCLQEWSAAIRQRLLDVASLCTI 92
           +W++ILV E C L IR+N VDR+IELPWN DEEK+LH+CL +  +A       V SL  +
Sbjct: 554 EWMEILVNEFCCLSIRRNLVDRIIELPWNPDEEKYLHRCLLD--SATDDPSSAVGSLLVV 612

Query: 93  F 94
           F
Sbjct: 614 F 612

[Close]
BLAST of Sed0019349 vs. ExPASy TrEMBL
Match: A0A6J1H466 (E3 ubiquitin-protein ligase HOS1-like OS=Cucurbita moschata OX=3662 GN=LOC111459446 PE=4 SV=1)

HSP 1 Score: 144.8 bits (364), Expect = 2.0e-31
Identity = 68/80 (85.00%), Postives = 71/80 (88.75%), Query Frame = 0 

Query: 1   MYQKMLCH--RDRKKYEEHDDVIDNAQSKFNRREDWVKILVTEICFLCIRQNFVDRMIEL 60
           MYQKMLC+  RDRKKYEE +D  DNAQSKF R EDWVKILVTEICFLCIR+NFVDRMIEL
Sbjct: 530 MYQKMLCNKVRDRKKYEEREDEFDNAQSKFRRWEDWVKILVTEICFLCIRRNFVDRMIEL 589

Query: 61  PWNSDEEKHLHKCLQEWSAA 79
           PWNSDEEKHLHKCL EWS A
Sbjct: 590 PWNSDEEKHLHKCLMEWSTA 609

[Close]
BLAST of Sed0019349 vs. ExPASy TrEMBL
Match: A0A6J1K2I0 (E3 ubiquitin-protein ligase HOS1-like OS=Cucurbita maxima OX=3661 GN=LOC111491126 PE=4 SV=1)

HSP 1 Score: 143.3 bits (360), Expect = 5.9e-31
Identity = 67/80 (83.75%), Postives = 71/80 (88.75%), Query Frame = 0 

Query: 1   MYQKMLCH--RDRKKYEEHDDVIDNAQSKFNRREDWVKILVTEICFLCIRQNFVDRMIEL 60
           MYQK+LC+  RDRKKYEE +D  DNAQSKF R EDWVKILVTEICFLCIR+NFVDRMIEL
Sbjct: 530 MYQKILCNKVRDRKKYEEREDEFDNAQSKFRRWEDWVKILVTEICFLCIRRNFVDRMIEL 589

Query: 61  PWNSDEEKHLHKCLQEWSAA 79
           PWNSDEEKHLHKCL EWS A
Sbjct: 590 PWNSDEEKHLHKCLMEWSTA 609

[Close]
BLAST of Sed0019349 vs. ExPASy TrEMBL
Match: A0A6J1DW09 (E3 ubiquitin-protein ligase HOS1 OS=Momordica charantia OX=3673 GN=LOC111024600 PE=4 SV=1)

HSP 1 Score: 140.6 bits (353), Expect = 3.8e-30
Identity = 65/80 (81.25%), Postives = 70/80 (87.50%), Query Frame = 0 

Query: 1   MYQKMLCH--RDRKKYEEHDDVIDNAQSKFNRREDWVKILVTEICFLCIRQNFVDRMIEL 60
           MYQKMLC+  RDRKKYEEH+D +DNAQ KF   EDWVKILVTEIC+LCIR+NFVDRMIEL
Sbjct: 530 MYQKMLCNRVRDRKKYEEHEDALDNAQRKFRSWEDWVKILVTEICYLCIRRNFVDRMIEL 589

Query: 61  PWNSDEEKHLHKCLQEWSAA 79
           PWNS EEKHLHKCL EWS A
Sbjct: 590 PWNSGEEKHLHKCLLEWSTA 609

[Close]
BLAST of Sed0019349 vs. ExPASy TrEMBL
Match: A0A0A0KKX8 (ELYS domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_5G165230 PE=4 SV=1)

HSP 1 Score: 139.4 bits (350), Expect = 8.5e-30
Identity = 64/80 (80.00%), Postives = 69/80 (86.25%), Query Frame = 0 

Query: 1   MYQKMLCH--RDRKKYEEHDDVIDNAQSKFNRREDWVKILVTEICFLCIRQNFVDRMIEL 60
           MYQKMLC+  RDRK Y+EH+D  DNAQ KF   EDW+KILVTEICFLCIR+NFVDRMIEL
Sbjct: 529 MYQKMLCNRVRDRKNYKEHEDTFDNAQGKFRSWEDWMKILVTEICFLCIRRNFVDRMIEL 588

Query: 61  PWNSDEEKHLHKCLQEWSAA 79
           PWNSDEEKHLHKCL EWS A
Sbjct: 589 PWNSDEEKHLHKCLLEWSTA 608

[Close]
BLAST of Sed0019349 vs. ExPASy TrEMBL
Match: A0A5A7T8D9 (O-fucosyltransferase family protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold558G00660 PE=3 SV=1)

HSP 1 Score: 137.1 bits (344), Expect = 4.2e-29
Identity = 62/80 (77.50%), Postives = 69/80 (86.25%), Query Frame = 0 

Query: 1   MYQKMLCH--RDRKKYEEHDDVIDNAQSKFNRREDWVKILVTEICFLCIRQNFVDRMIEL 60
           MYQKMLC+  RDR+ Y+EH+D  DNA+ KF   EDW+KILVTEICFLCIR+NFVDRMIEL
Sbjct: 529 MYQKMLCNRVRDRRNYKEHEDAFDNAEGKFRSWEDWMKILVTEICFLCIRRNFVDRMIEL 588

Query: 61  PWNSDEEKHLHKCLQEWSAA 79
           PWNSDEEKHLHKCL EWS A
Sbjct: 589 PWNSDEEKHLHKCLLEWSTA 608

[Close]
BLAST of Sed0019349 vs. TAIR 10
Match: AT2G39810.1 (ubiquitin-protein ligases )

HSP 1 Score: 67.4 bits (163), Expect = 7.9e-12
Identity = 32/61 (52.46%), Postives = 42/61 (68.85%), Query Frame = 0 

Query: 33  DWVKILVTEICFLCIRQNFVDRMIELPWNSDEEKHLHKCLQEWSAAIRQRLLDVASLCTI 92
           +W++ILV E C L IR+N VDR+IELPWN DEEK+LH+CL +  +A       V SL  +
Sbjct: 554 EWMEILVNEFCCLSIRRNLVDRIIELPWNPDEEKYLHRCLLD--SATDDPSSAVGSLLVV 612

Query: 93  F 94
           F
Sbjct: 614 F 612

The following BLAST results are available for this feature:
BLAST of Sed0019349 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG7036140.14.2e-3185.00E3 ubiquitin-protein ligase HOS1 [Cucurbita argyrosperma subsp. argyrosperma][more]
XP_023522159.14.2e-3185.00E3 ubiquitin-protein ligase HOS1-like, partial [Cucurbita pepo subsp. pepo][more]
XP_023533438.14.2e-3185.00E3 ubiquitin-protein ligase HOS1-like [Cucurbita pepo subsp. pepo][more]
XP_022958124.14.2e-3185.00E3 ubiquitin-protein ligase HOS1-like [Cucurbita moschata][more]
XP_022995656.11.2e-3083.75E3 ubiquitin-protein ligase HOS1-like [Cucurbita maxima][more]
BLAST of Sed0019349 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q84JU61.1e-1052.46E3 ubiquitin-protein ligase HOS1 OS=Arabidopsis thaliana OX=3702 GN=HOS1 PE=1 SV... [more]
BLAST of Sed0019349 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1H4662.0e-3185.00E3 ubiquitin-protein ligase HOS1-like OS=Cucurbita moschata OX=3662 GN=LOC111459... [more]
A0A6J1K2I05.9e-3183.75E3 ubiquitin-protein ligase HOS1-like OS=Cucurbita maxima OX=3661 GN=LOC11149112... [more]
A0A6J1DW093.8e-3081.25E3 ubiquitin-protein ligase HOS1 OS=Momordica charantia OX=3673 GN=LOC111024600 ... [more]
A0A0A0KKX88.5e-3080.00ELYS domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_5G165230 PE=4 S... [more]
A0A5A7T8D94.2e-2977.50O-fucosyltransferase family protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6... [more]
BLAST of Sed0019349 vs. TAIR 10
Match NameE-valueIdentityDescription
AT2G39810.17.9e-1252.46ubiquitin-protein ligases [more]
InterPro
Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR025151ELYS-like domainPFAMPF13934ELYScoord: 18..74
e-value: 6.1E-9
score: 36.1
IPR044718E3 ubiquitin-protein ligase HOS1PANTHERPTHR47358E3 UBIQUITIN-PROTEIN LIGASE HOS1coord: 1..76

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Sed0019349.1Sed0019349.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006004 fucose metabolic process
biological_process GO:0045892 negative regulation of transcription, DNA-templated
biological_process GO:0016567 protein ubiquitination
biological_process GO:0009409 response to cold
biological_process GO:0010228 vegetative to reproductive phase transition of meristem
cellular_component GO:0005737 cytoplasm
cellular_component GO:0005634 nucleus
molecular_function GO:0004842 ubiquitin-protein transferase activity