Sed0019279 (gene) Chayote v1

Overview


Name	Sed0019279
Type	gene
Organism	Sechium edule (Chayote v1)
Description	Unknown protein
Location	LG06: 39301373 .. 39302218 (-)
RNA-Seq Expression	Sed0019279
Synteny	Sed0019279

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATTGTCCTATAATTGAAGTAGGTTTTGGTCCACACAGGCAATATCCCAATTCTCCACTACATGCCAAACCCCCAATATATTTATCCCCTCATCTTCTCATTATTGTTCACATGGGACTTTCTACCAACAGCATGGCCTCAACACTTCTGATACCATCAATGGTGATTTTGGTTCTGCTTCTGCTGCCAAATCCGACCGCTTCCAATCCTGCCGTCAACCATACCACGCCCGATCCGTGGACCATCCACCCGGAAAACTACCTCGTAGGCGACATCGACTTCGATTACGAGTTTCTGATGGGAACGGAGACCAGCCGAATGATGCAGGAATCCATTACTTTCCAAACTCCAAACACCAACGATCCTAACAAACAATCGGTGCCGGAGTGTAATCGGCCGCCGCGCTACGACAGCTGCCTCGGCCAGAAAAACAAGAATCCGACCTCTGAAAATTGCGCCACCCTTAATCGCGTCAACCCCTGTTCGTAGCTCCTTGAAAGAGAAGGAAATTAAGCCCAACAAGAACTCAGGTATTTGTGTTGTGATTTATAGTAATGTCATGTTTAATGGATTGTGTAACTGATGGCCGGGTGTTGATTGTTCAATAAAGATCTTTTGTTGTTGTTTGATCAAAATCGTGTATACTTCATACATTCTATTTTGATGTTAATTTTGGTTTGAGAGCCAAATATCAAATCTGGAATCGAATCCGTGAATTATTTGGCGTTGAACTGGATTTCCACCTAATAATGAAACTATCAGGTCATCAAACCTTTTTATCGGTTAAAATATATACCTTATTTTCATTTTTATTCTCCTATAATCCAATTTTATTTCTTGAAATCAC

mRNA sequence

ATTGTCCTATAATTGAAGTAGGTTTTGGTCCACACAGGCAATATCCCAATTCTCCACTACATGCCAAACCCCCAATATATTTATCCCCTCATCTTCTCATTATTGTTCACATGGGACTTTCTACCAACAGCATGGCCTCAACACTTCTGATACCATCAATGGTGATTTTGGTTCTGCTTCTGCTGCCAAATCCGACCGCTTCCAATCCTGCCGTCAACCATACCACGCCCGATCCGTGGACCATCCACCCGGAAAACTACCTCGTAGGCGACATCGACTTCGATTACGAGTTTCTGATGGGAACGGAGACCAGCCGAATGATGCAGGAATCCATTACTTTCCAAACTCCAAACACCAACGATCCTAACAAACAATCGGTGCCGGAGTGTAATCGGCCGCCGCGCTACGACAGCTGCCTCGGCCAGAAAAACAAGAATCCGACCTCTGAAAATTGCGCCACCCTTAATCGCGTCAACCCCTGTTCGTAGCTCCTTGAAAGAGAAGGAAATTAAGCCCAACAAGAACTCAGGTATTTGTGTTGTGATTTATAGTAATGTCATGTTTAATGGATTGTGTAACTGATGGCCGGGTGTTGATTGTTCAATAAAGATCTTTTGTTGTTGTTTGATCAAAATCGTGTATACTTCATACATTCTATTTTGATGTTAATTTTGGTTTGAGAGCCAAATATCAAATCTGGAATCGAATCCGTGAATTATTTGGCGTTGAACTGGATTTCCACCTAATAATGAAACTATCAGGTCATCAAACCTTTTTATCGGTTAAAATATATACCTTATTTTCATTTTTATTCTCCTATAATCCAATTTTATTTCTTGAAATCAC

Coding sequence (CDS)

ATGGGACTTTCTACCAACAGCATGGCCTCAACACTTCTGATACCATCAATGGTGATTTTGGTTCTGCTTCTGCTGCCAAATCCGACCGCTTCCAATCCTGCCGTCAACCATACCACGCCCGATCCGTGGACCATCCACCCGGAAAACTACCTCGTAGGCGACATCGACTTCGATTACGAGTTTCTGATGGGAACGGAGACCAGCCGAATGATGCAGGAATCCATTACTTTCCAAACTCCAAACACCAACGATCCTAACAAACAATCGGTGCCGGAGTGTAATCGGCCGCCGCGCTACGACAGCTGCCTCGGCCAGAAAAACAAGAATCCGACCTCTGAAAATTGCGCCACCCTTAATCGCGTCAACCCCTGTTCGTAG

Protein sequence

MGLSTNSMASTLLIPSMVILVLLLLPNPTASNPAVNHTTPDPWTIHPENYLVGDIDFDYEFLMGTETSRMMQESITFQTPNTNDPNKQSVPECNRPPRYDSCLGQKNKNPTSENCATLNRVNPCS

Homology

[Close]

BLAST of Sed0019279 vs. NCBI nr
Match: KAG7011063.1 (hypothetical protein SDJN02_27861, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 145.2 bits (365), Expect = 3.8e-31
Identity = 76/125 (60.80%), Postives = 94/125 (75.20%), Query Frame = 0


Query: 1   MGLSTNSMASTLLIPSMVILVLLLLPN-PTASNPAVNHTTPDPWTIHPENYLVGDIDFDY 60
           MG+++N+MA+TLL PSM IL ++LL N PT S+ A+N T  +      EN L+GD++ D 
Sbjct: 1   MGITSNTMAATLLTPSMTILFIILLLNPPTISHAAINKTAAEWCDGRLENCLIGDLNSDS 60

Query: 61  EFLMGTETSRMMQESITFQTPNTNDPNKQSVPECNRPPRYDSCLGQKNKNPTSENCATLN 120
           EFLM TETSRM+ +  +FQTPNTN+P+KQS PECNRPPRYDSCLGQK   P  ENC T N
Sbjct: 61  EFLMETETSRMLLDFNSFQTPNTNNPDKQSAPECNRPPRYDSCLGQKTSIPNPENCDTRN 120

Query: 121 RVNPC 125
           RVNPC
Sbjct: 121 RVNPC 125

[Close]

BLAST of Sed0019279 vs. NCBI nr
Match: KAG6607065.1 (hypothetical protein SDJN03_00407, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 144.8 bits (364), Expect = 4.9e-31
Identity = 76/125 (60.80%), Postives = 94/125 (75.20%), Query Frame = 0


Query: 1   MGLSTNSMASTLLIPSMVILVLLLLPN-PTASNPAVNHTTPDPWTIHPENYLVGDIDFDY 60
           MG+++N+MA+TLL PSM IL ++LL N PT S+ A+N T  +      EN L+GD++ D 
Sbjct: 1   MGITSNTMAATLLTPSMTILFIILLLNPPTISHAAINKTAAEWCDGRLENCLIGDLNSDS 60

Query: 61  EFLMGTETSRMMQESITFQTPNTNDPNKQSVPECNRPPRYDSCLGQKNKNPTSENCATLN 120
           EFLM TETSRM+ +  +FQTPNTN+P+KQS PECNRPPRYD CLGQKN  P  ENC T N
Sbjct: 61  EFLMETETSRMLLDFNSFQTPNTNNPDKQSAPECNRPPRYDGCLGQKNIIPNPENCDTRN 120

Query: 121 RVNPC 125
           RVNPC
Sbjct: 121 RVNPC 125

[Close]

BLAST of Sed0019279 vs. NCBI nr
Match: KGN53798.1 (hypothetical protein Csa_014747 [Cucumis sativus])

HSP 1 Score: 123.2 bits (308), Expect = 1.5e-24
Identity = 69/125 (55.20%), Postives = 86/125 (68.80%), Query Frame = 0


Query: 3   LSTNSMASTLLIPSMVILVLLLLPNPTASNPAVNHTTPDPW--TIHPENYLVGDIDFDYE 62
           L +NSMA+TL +PSM  L+ +LL NP  SN  +N  T   W  +   EN LVGD++   E
Sbjct: 4   LPSNSMAATLTMPSMAFLITILLLNPIISNAGMN-DTESKWCDSTGLENCLVGDLNSHSE 63

Query: 63  FLMGTETSRMM-QESITFQTPNTNDPNKQSVPECNRPPRYDSCLGQKNKNPTSENCATLN 122
           FLM TE+S M+  + +TFQTP  ND NK+SVP+C+RPPRYDSCLG K   P  E C+TLN
Sbjct: 64  FLMLTESSGMLVDQFLTFQTPKANDANKESVPDCSRPPRYDSCLGSKRSIPNPEPCSTLN 123

Query: 123 RVNPC 125
           RVNPC
Sbjct: 124 RVNPC 127

[Close]

BLAST of Sed0019279 vs. NCBI nr
Match: KAA0042447.1 (hypothetical protein E6C27_scaffold266G00270 [Cucumis melo var. makuwa] >TYK03509.1 hypothetical protein E5676_scaffold121G001310 [Cucumis melo var. makuwa])

HSP 1 Score: 122.9 bits (307), Expect = 2.0e-24
Identity = 63/117 (53.85%), Postives = 78/117 (66.67%), Query Frame = 0


Query: 8   MASTLLIPSMVILVLLLLPNPTASNPAVNHTTPDPWTIHPENYLVGDIDFDYEFLMGTET 67
           MA+T  IP+M I++L+LL N    N  VN T P+ W    EN L+GD   D EFLM T+T
Sbjct: 1   MATTFSIPTMAIIILILLFNTIGCNTTVNETAPE-WCYGSENCLIGDESSDSEFLMETDT 60

Query: 68  SRMMQESITFQTPNTNDPNKQSVPECNRPPRYDSCLGQKNKNPTSENCATLNRVNPC 125
           SRM+ +    QTP+TN+PN+QSVPEC RPPRYDSC+G+K      ENC   NR NPC
Sbjct: 61  SRMLLDFQNLQTPSTNNPNRQSVPECGRPPRYDSCIGEKRSISNPENCDVRNRENPC 116

[Close]

BLAST of Sed0019279 vs. NCBI nr
Match: KAE8649335.1 (hypothetical protein Csa_014907 [Cucumis sativus])

HSP 1 Score: 121.7 bits (304), Expect = 4.5e-24
Identity = 66/116 (56.90%), Postives = 76/116 (65.52%), Query Frame = 0


Query: 8   MASTLLIPSMVILVLLLLPNPTASNPAVNHTTPDPWTIHPENYLVGDIDFDYEFLMGTET 67
           MA+T  IP+M IL+L LL NPT  N  VN TT + W    EN LVGD   D EFLM TET
Sbjct: 1   MATTFSIPTMAILILTLLFNPTRCNTTVNETTSE-WCYGSENCLVGDESLDSEFLMETET 60

Query: 68  SRMMQESITFQTPNTNDPNKQSVPECNRPPRYDSCLGQKNKNPTSENCATLNRVNP 124
           SRM+ +    QTP T DPN+QSV EC RPPRYDSC G++ + P  ENC   NR NP
Sbjct: 61  SRMLLDFQNLQTPGTIDPNRQSVAECGRPPRYDSCTGEERQIPNPENCDVRNRANP 115

[Close]

BLAST of Sed0019279 vs. ExPASy TrEMBL
Match: A0A0A0KVZ2 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G131140 PE=4 SV=1)

HSP 1 Score: 125.2 bits (313), Expect = 2.0e-25
Identity = 67/117 (57.26%), Postives = 77/117 (65.81%), Query Frame = 0


Query: 8   MASTLLIPSMVILVLLLLPNPTASNPAVNHTTPDPWTIHPENYLVGDIDFDYEFLMGTET 67
           MA+T  IP+M IL+L LL NPT  N  VN TT + W    EN LVGD   D EFLM TET
Sbjct: 1   MATTFSIPTMAILILTLLFNPTRCNTTVNETTSE-WCYGSENCLVGDESLDSEFLMETET 60

Query: 68  SRMMQESITFQTPNTNDPNKQSVPECNRPPRYDSCLGQKNKNPTSENCATLNRVNPC 125
           SRM+ +    QTP T DPN+QSV EC RPPRYDSC G++ + P  ENC   NR NPC
Sbjct: 61  SRMLLDFQNLQTPGTIDPNRQSVAECGRPPRYDSCTGEERQIPNPENCDVRNRANPC 116

[Close]

BLAST of Sed0019279 vs. ExPASy TrEMBL
Match: A0A0A0KW62 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G130630 PE=4 SV=1)

HSP 1 Score: 123.2 bits (308), Expect = 7.4e-25
Identity = 69/125 (55.20%), Postives = 86/125 (68.80%), Query Frame = 0


Query: 3   LSTNSMASTLLIPSMVILVLLLLPNPTASNPAVNHTTPDPW--TIHPENYLVGDIDFDYE 62
           L +NSMA+TL +PSM  L+ +LL NP  SN  +N  T   W  +   EN LVGD++   E
Sbjct: 4   LPSNSMAATLTMPSMAFLITILLLNPIISNAGMN-DTESKWCDSTGLENCLVGDLNSHSE 63

Query: 63  FLMGTETSRMM-QESITFQTPNTNDPNKQSVPECNRPPRYDSCLGQKNKNPTSENCATLN 122
           FLM TE+S M+  + +TFQTP  ND NK+SVP+C+RPPRYDSCLG K   P  E C+TLN
Sbjct: 64  FLMLTESSGMLVDQFLTFQTPKANDANKESVPDCSRPPRYDSCLGSKRSIPNPEPCSTLN 123

Query: 123 RVNPC 125
           RVNPC
Sbjct: 124 RVNPC 127

[Close]

BLAST of Sed0019279 vs. ExPASy TrEMBL
Match: A0A5D3BZL1 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold121G001310 PE=4 SV=1)

HSP 1 Score: 122.9 bits (307), Expect = 9.7e-25
Identity = 63/117 (53.85%), Postives = 78/117 (66.67%), Query Frame = 0


Query: 8   MASTLLIPSMVILVLLLLPNPTASNPAVNHTTPDPWTIHPENYLVGDIDFDYEFLMGTET 67
           MA+T  IP+M I++L+LL N    N  VN T P+ W    EN L+GD   D EFLM T+T
Sbjct: 1   MATTFSIPTMAIIILILLFNTIGCNTTVNETAPE-WCYGSENCLIGDESSDSEFLMETDT 60

Query: 68  SRMMQESITFQTPNTNDPNKQSVPECNRPPRYDSCLGQKNKNPTSENCATLNRVNPC 125
           SRM+ +    QTP+TN+PN+QSVPEC RPPRYDSC+G+K      ENC   NR NPC
Sbjct: 61  SRMLLDFQNLQTPSTNNPNRQSVPECGRPPRYDSCIGEKRSISNPENCDVRNRENPC 116

[Close]

BLAST of Sed0019279 vs. ExPASy TrEMBL
Match: A0A6J1G927 (uncharacterized protein LOC111452044 OS=Cucurbita moschata OX=3662 GN=LOC111452044 PE=4 SV=1)

HSP 1 Score: 103.6 bits (257), Expect = 6.1e-19
Identity = 57/116 (49.14%), Postives = 73/116 (62.93%), Query Frame = 0


Query: 9   ASTLLIPSMVILVLLLLPNPTASNPAVNHTTPDPWTIHPENYLVGDIDFDYEFLMGTETS 68
           A+ ++IP+ + +++LLL NPT S+   +    +  T     YL+GD D D EFLM +  S
Sbjct: 3   AAAVIIPAAMAIMILLL-NPTTSDALTSFKPLNNDTSAAGKYLIGDQDLDSEFLMESHIS 62

Query: 69  RMMQESITFQTPNTNDPNKQSVPECNRPPRYDSCLGQKNKNPTSENCATLNRVNPC 125
           R++  S  FQT  TND NK S   C RPPRYDSCLGQK+ NP  ENC T NR NPC
Sbjct: 63  RILAGSQNFQTSKTNDANKASGGGCGRPPRYDSCLGQKSNNPPPENCGTFNRNNPC 117

[Close]

BLAST of Sed0019279 vs. ExPASy TrEMBL
Match: A0A6J1KBP5 (uncharacterized protein LOC111492854 OS=Cucurbita maxima OX=3661 GN=LOC111492854 PE=4 SV=1)

HSP 1 Score: 103.2 bits (256), Expect = 8.0e-19
Identity = 57/116 (49.14%), Postives = 73/116 (62.93%), Query Frame = 0


Query: 9   ASTLLIPSMVILVLLLLPNPTASNPAVNHTTPDPWTIHPENYLVGDIDFDYEFLMGTETS 68
           A+ ++IP+ + +++LLL NPT+S+        +  T     YL+GD D D EFLM +  S
Sbjct: 3   AAAVMIPAAMAIMILLL-NPTSSDALTTFKPLNNDTSAAGKYLIGDQDIDSEFLMESHIS 62

Query: 69  RMMQESITFQTPNTNDPNKQSVPECNRPPRYDSCLGQKNKNPTSENCATLNRVNPC 125
           R++  S  FQT  TND NK S   C RPPRYDSCLGQK+ NP  ENC T NR NPC
Sbjct: 63  RILAGSQDFQTSKTNDANKASGGGCERPPRYDSCLGQKSNNPPPENCGTFNRNNPC 117

The following BLAST results are available for this feature:

BLAST of Sed0019279 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7011063.1	3.8e-31	60.80	hypothetical protein SDJN02_27861, partial [Cucurbita argyrosperma subsp. argyro...	[more]
KAG6607065.1	4.9e-31	60.80	hypothetical protein SDJN03_00407, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KGN53798.1	1.5e-24	55.20	hypothetical protein Csa_014747 [Cucumis sativus]	[more]
KAA0042447.1	2.0e-24	53.85	hypothetical protein E6C27_scaffold266G00270 [Cucumis melo var. makuwa] >TYK0350...	[more]
KAE8649335.1	4.5e-24	56.90	hypothetical protein Csa_014907 [Cucumis sativus]	[more]

BLAST of Sed0019279 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Sed0019279 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KVZ2	2.0e-25	57.26	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G131140 PE=4 SV=1	[more]
A0A0A0KW62	7.4e-25	55.20	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G130630 PE=4 SV=1	[more]
A0A5D3BZL1	9.7e-25	53.85	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A6J1G927	6.1e-19	49.14	uncharacterized protein LOC111452044 OS=Cucurbita moschata OX=3662 GN=LOC1114520...	[more]
A0A6J1KBP5	8.0e-19	49.14	uncharacterized protein LOC111492854 OS=Cucurbita maxima OX=3661 GN=LOC111492854...	[more]

BLAST of Sed0019279 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 77..114

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0019279.1	Sed0019279.1	mRNA