Sed0019211 (gene) Chayote v1

Overview


Name	Sed0019211
Type	gene
Organism	Sechium edule (Chayote v1)
Description	Cystatin domain containing protein
Location	LG06: 8211990 .. 8212668 (-)
RNA-Seq Expression	Sed0019211
Synteny	Sed0019211

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATCAAACCTTACATGCCCTAGAACTACACCATGACTTAACACACTTGTATAAATATCAAACAACTATGAGAAGCAAAGACATCACAACTCAAAGCTTTTGCCATACAACAACTAACCAAAAGGCCAAAAATGATTTCTACCGTGCTCGCCAACATCGGTCAACACGATCCCATCCTCCACGTGACGTCAAAGGATGCGAAGGGTGATCCACGGTCCGAATGGATATCGATTCGCACCATCGAGGACCCCTACGTTCAAGAAGTTGCAAAGTTTGCAGTGACGGAGTTCGAAAAGGACAAAGCGGCGTCGTTTCGGTACAAGCGTTTGCTACGATGTTGGATCAAGGAAGAGATGGGAGGCATAAAATATCGCCTTGTTTTAGAGGTAAAAGAAGGTGCTAAATATGAAGCTATTGTTTGGGAGGCTTCTGGCCGTTTGATTATAAGGAAATTGAAGCTCATATCTTTCACCCCTTGCATTCATGGAGCTGATTGACATTTCCTCTTTGTAATTTTTAATCTACAAAACTTATGGTGTGAAATGTCATAAGTAGAATAAGAAACCTTTTTTCTATGTAAAAGTCCTCCATGTTCAAATCAAGTTTCTATTGTGTAAATTACTAAATTACACCTCTATGTTTCAAACTATCATCAATCAACTTTTTTAGATTTTCTTTTCA

mRNA sequence

ATCAAACCTTACATGCCCTAGAACTACACCATGACTTAACACACTTGTATAAATATCAAACAACTATGAGAAGCAAAGACATCACAACTCAAAGCTTTTGCCATACAACAACTAACCAAAAGGCCAAAAATGATTTCTACCGTGCTCGCCAACATCGGTCAACACGATCCCATCCTCCACGTGACGTCAAAGGATGCGAAGGGTGATCCACGGTCCGAATGGATATCGATTCGCACCATCGAGGACCCCTACGTTCAAGAAGTTGCAAAGTTTGCAGTGACGGAGTTCGAAAAGGACAAAGCGGCGTCGTTTCGGTACAAGCGTTTGCTACGATGTTGGATCAAGGAAGAGATGGGAGGCATAAAATATCGCCTTGTTTTAGAGGTAAAAGAAGGTGCTAAATATGAAGCTATTGTTTGGGAGGCTTCTGGCCGTTTGATTATAAGGAAATTGAAGCTCATATCTTTCACCCCTTGCATTCATGGAGCTGATTGACATTTCCTCTTTGTAATTTTTAATCTACAAAACTTATGGTGTGAAATGTCATAAGTAGAATAAGAAACCTTTTTTCTATGTAAAAGTCCTCCATGTTCAAATCAAGTTTCTATTGTGTAAATTACTAAATTACACCTCTATGTTTCAAACTATCATCAATCAACTTTTTTAGATTTTCTTTTCA

Coding sequence (CDS)

ATGATTTCTACCGTGCTCGCCAACATCGGTCAACACGATCCCATCCTCCACGTGACGTCAAAGGATGCGAAGGGTGATCCACGGTCCGAATGGATATCGATTCGCACCATCGAGGACCCCTACGTTCAAGAAGTTGCAAAGTTTGCAGTGACGGAGTTCGAAAAGGACAAAGCGGCGTCGTTTCGGTACAAGCGTTTGCTACGATGTTGGATCAAGGAAGAGATGGGAGGCATAAAATATCGCCTTGTTTTAGAGGTAAAAGAAGGTGCTAAATATGAAGCTATTGTTTGGGAGGCTTCTGGCCGTTTGATTATAAGGAAATTGAAGCTCATATCTTTCACCCCTTGCATTCATGGAGCTGATTGA

Protein sequence

MISTVLANIGQHDPILHVTSKDAKGDPRSEWISIRTIEDPYVQEVAKFAVTEFEKDKAASFRYKRLLRCWIKEEMGGIKYRLVLEVKEGAKYEAIVWEASGRLIIRKLKLISFTPCIHGAD

Homology

[Close]

BLAST of Sed0019211 vs. NCBI nr
Match: KAA0031436.1 (Cystatin domain containing protein [Cucumis melo var. makuwa] >TYK06887.1 Cystatin domain containing protein [Cucumis melo var. makuwa])

HSP 1 Score: 203.0 bits (515), Expect = 1.5e-48
Identity = 102/123 (82.93%), Postives = 107/123 (86.99%), Query Frame = 0


Query: 1   MISTVLANIGQHDPILHVTSKDAKGDPRSEWISIRTIEDPYVQEVAKFAVTEFEKDKAAS 60
           MISTVLANIGQHDPILHVTSKD KGD +SEWISIR IEDPYVQEVAKFAV EFEK+K A 
Sbjct: 1   MISTVLANIGQHDPILHVTSKDTKGDHQSEWISIRAIEDPYVQEVAKFAVREFEKEKMAR 60

Query: 61  FRYKRLLRCWIKEEMGGIKYRLVLEV----KEGAKYEAIVWEASGRLIIRKLKLISFTPC 120
            +YKRLL CWIKEEMGGIKYRL+LEV    K   KYEAIVWEASGRLIIRKLKLISF PC
Sbjct: 61  SQYKRLLSCWIKEEMGGIKYRLILEVIKEEKIEGKYEAIVWEASGRLIIRKLKLISFMPC 120

[Close]

BLAST of Sed0019211 vs. NCBI nr
Match: KGN43767.1 (hypothetical protein Csa_017208 [Cucumis sativus])

HSP 1 Score: 201.4 bits (511), Expect = 4.3e-48
Identity = 100/124 (80.65%), Postives = 108/124 (87.10%), Query Frame = 0


Query: 1   MISTVLANIGQHDPILHVTSKDAKGDPRSEWISIRTIEDPYVQEVAKFAVTEFEKDKAAS 60
           MIST+LAN+GQHDPILHVTSKD KGD +SEWISIR IEDPYVQEVAKFA+ EFEK+K A 
Sbjct: 1   MISTLLANVGQHDPILHVTSKDTKGDHQSEWISIRAIEDPYVQEVAKFAMREFEKEKMAR 60

Query: 61  FRYKRLLRCWIKEEMGGIKYRLVLEV----KEGAKYEAIVWEASGRLIIRKLKLISFTPC 120
           F+YKRLL CWIKEEMGGIKYRLVLEV    K   KYEA+VWEASGRLIIRKLKLISF P 
Sbjct: 61  FQYKRLLSCWIKEEMGGIKYRLVLEVIKEEKLEGKYEAVVWEASGRLIIRKLKLISFMPS 120

[Close]

BLAST of Sed0019211 vs. NCBI nr
Match: KAG6588760.1 (hypothetical protein SDJN03_17325, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 198.4 bits (503), Expect = 3.6e-47
Identity = 99/122 (81.15%), Postives = 106/122 (86.89%), Query Frame = 0


Query: 1   MISTVLANIGQHDPILHVTSKDAKGDPRSEWISIRTIEDPYVQEVAKFAVTEFEKDKAAS 60
           MIST+L NIGQHDPILHVT KD KGDPRSEWISIRTIEDPYVQEVAKFAV EF  DK  +
Sbjct: 1   MISTLLTNIGQHDPILHVT-KDVKGDPRSEWISIRTIEDPYVQEVAKFAVIEFNVDKMTT 60

Query: 61  FRYKRLLRCWIKEEMGGIKYRLVLEVKEGA------KYEAIVWEASGRLIIRKLKLISFT 117
           F+YKR+LRCWIKEEMGGIKYRLVLEVK+ A      KYEA+VWEASGRLIIRKLKL+SF 
Sbjct: 61  FQYKRMLRCWIKEEMGGIKYRLVLEVKQEAPTQKVCKYEAVVWEASGRLIIRKLKLVSFV 120

[Close]

BLAST of Sed0019211 vs. NCBI nr
Match: KAG6571859.1 (hypothetical protein SDJN03_28587, partial [Cucurbita argyrosperma subsp. sororia] >KAG7011544.1 hypothetical protein SDJN02_26450, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 188.3 bits (477), Expect = 3.8e-44
Identity = 94/120 (78.33%), Postives = 102/120 (85.00%), Query Frame = 0


Query: 5   VLANIGQHDPILHVTSKDAKGDPRSEWISIRTIEDPYVQEVAKFAVTEFEKDKAASFRYK 64
           +LANIGQHDPILHVT KDAKGD  SEWISIR IEDPYVQEVAKF V E  K+K A+F+YK
Sbjct: 1   MLANIGQHDPILHVT-KDAKGDHCSEWISIRAIEDPYVQEVAKFVVVEVNKEKKATFQYK 60

Query: 65  RLLRCWIKEEMGGIKYRLVLEVKEGA---KYEAIVWEASGRLIIRKLKLISFTPCIHGAD 122
            LLRCW+KEEMGGIKYRL+LEVK GA   KYEAIVWEASGRLIIRKLKL+SF  C HG +
Sbjct: 61  GLLRCWVKEEMGGIKYRLILEVKGGASEGKYEAIVWEASGRLIIRKLKLVSFVACNHGVE 119

[Close]

BLAST of Sed0019211 vs. NCBI nr
Match: MBA0694727.1 (hypothetical protein [Gossypium aridum])

HSP 1 Score: 65.9 bits (159), Expect = 2.8e-07
Identity = 40/105 (38.10%), Postives = 61/105 (58.10%), Query Frame = 0


Query: 15  ILHVTSKDAKGDP-RSEWISIRTIEDPYVQEVAKFAVTEFEKDKAASFRYKRLLRCWIKE 74
           +L +T  DA+ D     W  I+ I+DP+V E+AKFAV E+ K   AS +   +++    +
Sbjct: 16  LLPLTFSDARKDALAGGWTPIKDIKDPHVMEIAKFAVDEYNKQSKASLKLDEVVK-GETQ 75

Query: 75  EMGGIKYRLVLEVKEGA---KYEAIVWEASGRLIIRKLKLISFTP 116
            + GI Y+LVL+ K+G+    YEA+VWE   +  +    L SFTP
Sbjct: 76  VVSGINYKLVLKAKDGSAVNTYEAVVWE---KAWLHFRNLTSFTP 116

[Close]

BLAST of Sed0019211 vs. ExPASy Swiss-Prot
Match: Q6TPK4 (Cysteine proteinase inhibitor 1 OS=Actinidia deliciosa OX=3627 PE=1 SV=1)

HSP 1 Score: 49.3 bits (116), Expect = 3.6e-05
Identity = 26/71 (36.62%), Postives = 42/71 (59.15%), Query Frame = 0


Query: 31  WISIRTIEDPYVQEVAKFAVTEFEKDKAASFRYKRLLRCWIKEEMGGIKYRLVLEVKEGA 90
           W  I ++    VQ+VA+FAV+E  K      +Y+ ++R +  + + G  YRLV+  K+GA
Sbjct: 32  WRPIESLNSAEVQDVAQFAVSEHNKQANDELQYQSVVRGY-TQVVAGTNYRLVIAAKDGA 91

Query: 91  ---KYEAIVWE 99
               YEA+VW+
Sbjct: 92  VVGNYEAVVWD 101

[Close]

BLAST of Sed0019211 vs. ExPASy Swiss-Prot
Match: P86472 (Cysteine proteinase inhibitor 1 OS=Actinidia chinensis var. chinensis OX=1590841 GN=CYT1 PE=1 SV=2)

HSP 1 Score: 48.9 bits (115), Expect = 4.7e-05
Identity = 26/71 (36.62%), Postives = 41/71 (57.75%), Query Frame = 0


Query: 31  WISIRTIEDPYVQEVAKFAVTEFEKDKAASFRYKRLLRCWIKEEMGGIKYRLVLEVKEGA 90
           W  I  +    VQ+VA+FAV+E  K      +Y+ ++R +  + + G  YRLV+  K+GA
Sbjct: 32  WRPIENLNSAEVQDVAQFAVSEHNKQANDELQYQSVVRGY-TQVVAGTNYRLVIAAKDGA 91

Query: 91  ---KYEAIVWE 99
               YEA+VW+
Sbjct: 92  VVGNYEAVVWD 101

[Close]

BLAST of Sed0019211 vs. ExPASy Swiss-Prot
Match: Q10Q47 (Putative cysteine proteinase inhibitor 7 OS=Oryza sativa subsp. japonica OX=39947 GN=Os03g0210100 PE=3 SV=1)

HSP 1 Score: 47.4 bits (111), Expect = 1.4e-04
Identity = 33/83 (39.76%), Postives = 46/83 (55.42%), Query Frame = 0


Query: 37  IEDPYVQEVAKFAVTEFEKDKAASFRYKRLLRCWIKEEMGGIKYRLVLEV-KEGAK---Y 96
           I DP+VQE+ ++AV E ++  AA       +    K+ + G+ YRL LE    GAK   Y
Sbjct: 35  INDPHVQELGRWAVAEEDRGVAAGGLTFERVTDGEKQVVAGVNYRLTLEASSSGAKDGRY 94

Query: 97  EAIVWEASGRLIIRKLKLISFTP 116
           EA+V+E   R   R  KL+SF P
Sbjct: 95  EAVVYEQDPRSNAR--KLVSFEP 115

[Close]

BLAST of Sed0019211 vs. ExPASy TrEMBL
Match: A0A5A7SN35 (Cystatin domain containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold13G001920 PE=4 SV=1)

HSP 1 Score: 203.0 bits (515), Expect = 7.2e-49
Identity = 102/123 (82.93%), Postives = 107/123 (86.99%), Query Frame = 0


Query: 1   MISTVLANIGQHDPILHVTSKDAKGDPRSEWISIRTIEDPYVQEVAKFAVTEFEKDKAAS 60
           MISTVLANIGQHDPILHVTSKD KGD +SEWISIR IEDPYVQEVAKFAV EFEK+K A 
Sbjct: 1   MISTVLANIGQHDPILHVTSKDTKGDHQSEWISIRAIEDPYVQEVAKFAVREFEKEKMAR 60

Query: 61  FRYKRLLRCWIKEEMGGIKYRLVLEV----KEGAKYEAIVWEASGRLIIRKLKLISFTPC 120
            +YKRLL CWIKEEMGGIKYRL+LEV    K   KYEAIVWEASGRLIIRKLKLISF PC
Sbjct: 61  SQYKRLLSCWIKEEMGGIKYRLILEVIKEEKIEGKYEAIVWEASGRLIIRKLKLISFMPC 120

[Close]

BLAST of Sed0019211 vs. ExPASy TrEMBL
Match: A0A0A0K644 (Cystatin domain containing protein OS=Cucumis sativus OX=3659 GN=Csa_7G066240 PE=4 SV=1)

HSP 1 Score: 201.4 bits (511), Expect = 2.1e-48
Identity = 100/124 (80.65%), Postives = 108/124 (87.10%), Query Frame = 0


Query: 1   MISTVLANIGQHDPILHVTSKDAKGDPRSEWISIRTIEDPYVQEVAKFAVTEFEKDKAAS 60
           MIST+LAN+GQHDPILHVTSKD KGD +SEWISIR IEDPYVQEVAKFA+ EFEK+K A 
Sbjct: 1   MISTLLANVGQHDPILHVTSKDTKGDHQSEWISIRAIEDPYVQEVAKFAMREFEKEKMAR 60

Query: 61  FRYKRLLRCWIKEEMGGIKYRLVLEV----KEGAKYEAIVWEASGRLIIRKLKLISFTPC 120
           F+YKRLL CWIKEEMGGIKYRLVLEV    K   KYEA+VWEASGRLIIRKLKLISF P 
Sbjct: 61  FQYKRLLSCWIKEEMGGIKYRLVLEVIKEEKLEGKYEAVVWEASGRLIIRKLKLISFMPS 120

[Close]

BLAST of Sed0019211 vs. ExPASy TrEMBL
Match: A0A2P2NS36 (Cysteine proteinase inhibitor OS=Rhizophora mucronata OX=61149 PE=4 SV=1)

HSP 1 Score: 68.2 bits (165), Expect = 2.8e-08
Identity = 39/88 (44.32%), Postives = 54/88 (61.36%), Query Frame = 0


Query: 31  WISIRTIEDPYVQEVAKFAVTEFEKDKAASFRYKRLLRCWIKEEMGGIKYRLVLEVKEGA 90
           W  I  + DP+VQE+A +AV E+     A+ + +RL++   K+ + GIKYRLVL VKEG 
Sbjct: 32  WTPITNLSDPHVQEIASYAVREYNHRSNANLKLQRLVK-GEKQVVSGIKYRLVLAVKEGG 91

Query: 91  ---KYEAIVWEASGRLIIRKLKLISFTP 116
              KY+A+VWE +        KLISF P
Sbjct: 92  SDKKYQAVVWEKAWE---HFRKLISFKP 115

[Close]

BLAST of Sed0019211 vs. ExPASy TrEMBL
Match: A0A7J9N5T5 (Cystatin domain-containing protein OS=Gossypium schwendimanii OX=34291 GN=Goshw_013469 PE=4 SV=1)

HSP 1 Score: 65.9 bits (159), Expect = 1.4e-07
Identity = 40/105 (38.10%), Postives = 61/105 (58.10%), Query Frame = 0


Query: 15  ILHVTSKDAKGDP-RSEWISIRTIEDPYVQEVAKFAVTEFEKDKAASFRYKRLLRCWIKE 74
           +L +T  DA+ D     W  I+ I+DP+V E+AKFAV E+ K   AS +   +++    +
Sbjct: 49  LLPLTFSDARKDALAGGWTPIKDIKDPHVMEIAKFAVDEYNKQSKASLKLDEVVK-GETQ 108

Query: 75  EMGGIKYRLVLEVKEGA---KYEAIVWEASGRLIIRKLKLISFTP 116
            + GI Y+LVL+ K+G+    YEA+VWE   +  +    L SFTP
Sbjct: 109 VVSGINYKLVLKAKDGSAVNTYEAVVWE---KAWLHFRNLTSFTP 149

[Close]

BLAST of Sed0019211 vs. ExPASy TrEMBL
Match: A0A7J8Y588 (Cystatin domain-containing protein OS=Gossypium aridum OX=34290 GN=Goari_005000 PE=4 SV=1)

HSP 1 Score: 65.9 bits (159), Expect = 1.4e-07
Identity = 40/105 (38.10%), Postives = 61/105 (58.10%), Query Frame = 0


Query: 15  ILHVTSKDAKGDP-RSEWISIRTIEDPYVQEVAKFAVTEFEKDKAASFRYKRLLRCWIKE 74
           +L +T  DA+ D     W  I+ I+DP+V E+AKFAV E+ K   AS +   +++    +
Sbjct: 16  LLPLTFSDARKDALAGGWTPIKDIKDPHVMEIAKFAVDEYNKQSKASLKLDEVVK-GETQ 75

Query: 75  EMGGIKYRLVLEVKEGA---KYEAIVWEASGRLIIRKLKLISFTP 116
            + GI Y+LVL+ K+G+    YEA+VWE   +  +    L SFTP
Sbjct: 76  VVSGINYKLVLKAKDGSAVNTYEAVVWE---KAWLHFRNLTSFTP 116

[Close]

BLAST of Sed0019211 vs. TAIR 10
Match: AT5G47550.1 (Cystatin/monellin superfamily protein )

HSP 1 Score: 41.2 bits (95), Expect = 6.9e-04
Identity = 26/93 (27.96%), Postives = 46/93 (49.46%), Query Frame = 0


Query: 31  WISIRTIEDPYVQEVAKFAVTEFEKDKAASFRYKRLLRCWIKEEMGGIKYRLVLEVKEG- 90
           W  I  + DP V E+ +FAV+E+ K   +  +++ ++     + + G  YRL +   +G 
Sbjct: 31  WSPISNVTDPQVVEIGEFAVSEYNKRSESGLKFETVV-SGETQVVSGTNYRLKVAANDGD 90

Query: 91  ---AKYEAIVWEASGRLIIRKLKLISFTPCIHG 120
                Y AIVW+   +  ++   L SF P  +G
Sbjct: 91  GVSKNYLAIVWD---KPWMKFRNLTSFEPANNG 119

The following BLAST results are available for this feature:

BLAST of Sed0019211 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0031436.1	1.5e-48	82.93	Cystatin domain containing protein [Cucumis melo var. makuwa] >TYK06887.1 Cystat...	[more]
KGN43767.1	4.3e-48	80.65	hypothetical protein Csa_017208 [Cucumis sativus]	[more]
KAG6588760.1	3.6e-47	81.15	hypothetical protein SDJN03_17325, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAG6571859.1	3.8e-44	78.33	hypothetical protein SDJN03_28587, partial [Cucurbita argyrosperma subsp. sorori...	[more]
MBA0694727.1	2.8e-07	38.10	hypothetical protein [Gossypium aridum]	[more]

BLAST of Sed0019211 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q6TPK4	3.6e-05	36.62	Cysteine proteinase inhibitor 1 OS=Actinidia deliciosa OX=3627 PE=1 SV=1	[more]
P86472	4.7e-05	36.62	Cysteine proteinase inhibitor 1 OS=Actinidia chinensis var. chinensis OX=1590841...	[more]
Q10Q47	1.4e-04	39.76	Putative cysteine proteinase inhibitor 7 OS=Oryza sativa subsp. japonica OX=3994...	[more]

BLAST of Sed0019211 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7SN35	7.2e-49	82.93	Cystatin domain containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E56...	[more]
A0A0A0K644	2.1e-48	80.65	Cystatin domain containing protein OS=Cucumis sativus OX=3659 GN=Csa_7G066240 PE...	[more]
A0A2P2NS36	2.8e-08	44.32	Cysteine proteinase inhibitor OS=Rhizophora mucronata OX=61149 PE=4 SV=1	[more]
A0A7J9N5T5	1.4e-07	38.10	Cystatin domain-containing protein OS=Gossypium schwendimanii OX=34291 GN=Goshw_...	[more]
A0A7J8Y588	1.4e-07	38.10	Cystatin domain-containing protein OS=Gossypium aridum OX=34290 GN=Goari_005000 ...	[more]

BLAST of Sed0019211 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G47550.1	6.9e-04	27.96	Cystatin/monellin superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25

Position :

Zoom :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000010	Cystatin domain	PFAM	PF16845	SQAPI	coord: 34..114 e-value: 1.1E-12 score: 48.1
None	No IPR available	GENE3D	3.10.450.10		coord: 30..119 e-value: 2.2E-15 score: 58.5
None	No IPR available	PANTHER	PTHR47364	CYSTEINE PROTEINASE INHIBITOR 5	coord: 20..116
None	No IPR available	SUPERFAMILY	54403	Cystatin/monellin	coord: 31..116

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0019211.1	Sed0019211.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0010951	negative regulation of endopeptidase activity
molecular_function	GO:0004869	cysteine-type endopeptidase inhibitor activity