Sed0019205 (gene) Chayote v1

Overview
NameSed0019205
Typegene
OrganismSechium edule (Chayote v1)
DescriptionUnknown protein
LocationLG08: 36521088 .. 36523894 (-)
RNA-Seq ExpressionSed0019205
SyntenySed0019205
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCTGCCAGTGTGGCCATGGTGGAAGCTGGGCACGCCGATCACTTTCCCAAATGGAGCTCTGAGACTCTGTTTCCGTCCAAGCCGCGGCTGCAGAATTACGGCACGGCGGCGCCGGAGCCGGAGCCTGGCAATGGAAAAGATGGGGTAAAGGTGGTTGAGGCTGAAGATGCTCTGTATAAAGTTATGTACTTGAATTGTTGGACACAGAGCTAACTTAATATTTACATCAATATTGATTATATGCTCAATATTTACACCTCACTTCTACCAAAAAAAAAAATTTAGTCTTTGTAATTTAAATAATCAATAATATAGTATGCACATTTTTGGGGAAAATATTGTCATGGCGGCAGTTCTGTAGAAACTGAGATAACATGATAAAAAACGTGAGCGGCAGGATTCGAACCTGCGCGGGCAAAGCCCACATGATTTCTAGTCATGCCCGATAACCACTCCGGCACGCCCACTTGTTTGATAAGTAAGTTGACATGTAATTAAGAATACTAAATAAGTTTGGATGAATTCACCAAAATCTGTACGGAGTTAATAAATTTAAGGAGAAAATAGATTGTGAAAATTTGGGGCTGGTTGTTGGTGAATTTACGGAGGTGTTGGCTGTGAATGAATCTATTGAGAATATGAGATAATTGATTTCTGGTTCACGACTGCACTTTTCCCATGACACTGTTGCATATAATTTTTTTTCAAAAAGCTTGAGTACCAAATTTCGTGGTTGTATAGTCATTATTTTGGCGATAATCATGAATGTGAATTCAATGTGTTAAGGGGTTCTGTTGAAATTGCGATAAGAAAATATAAGTGTACTGTGCATATAGGAAGTATTTGTCTGTTTCTATATTAAAAATGTGAGGAATTTTTAATATTTTTATAAGATATATGAATTAATATTCTCGCTATTAATTTATTTTACTTTGAGGTAAAACCCCATCCTATTTGAAACCAATATATTCTCAAATAAATTTTTTTATATTTTATTGATGATGTATGTTAAGTAATTAGTCGAATACAAAATAGATTATCAATTTAAGGATATTTTTTTGTAAAAATTGATAACTAGTTTCTTATTTGATCTACTATTTAATCCATAACATCAATAAAATACAAAAAACATGAATCTTATCTAAAAAATGAATTGGATAACCTCAAAGAAACCAAAAGGTAGCACCAATTTTAATTAAAGCTTCGAGGTCATGCAATTCTCATTGTTGATTCATACCAACACCGTGATCCTCTTTTTATCGCAACCTAATTTATTAATTTCGCCCCCTACGCTCACCCTATTCTATATTTATGCATTAATAAAGTCATATCCATATCTATATTCAAATCATTTTAAACTCTTTTTTTTCAACTGCTATTTTTGGATTTAGTCCAGCAATAAAAGCCTAATTGGCAGCTAGTTTGCACTCCTACATAACATCTAATTTTTCCAAATAGTATCACAAAATTAATTAATCATTATAAATATAACTCAATTGATTAAAGTTCAAATTCTTCCCCCACACAACACATAAGAAAAAATATTTATATAATATGACATATTTTTACTTTATTTTATGATTGGAAGTTTGAATACTCATTAACATGTGATATAATATTATTAGAAGTATATTTATATATTTTTAGTTCACATGTCAATCAAAACCAAATAGATACAGTAAGCAATTGAGATTATGCTCACACTATTAAGATGAACCATTGAATCTATATTGAGATGTTTAGTTGATTTTTTTCCCTATTTCTATAAAGATAAATAATTAATGTGATTTGTTAAAAAAGAATTTTAAACAACAATCTAACAATAATGTGAAACAAAGAATATATAAGTTTAAGCATTTCATTAATATTGTGTTAGCTACGTTTATATATATAGAAGAGAAATAATTTTATTAGAGATAAGTAAACAAATGTTTAACAAAGGAGGAGAAAATTCTAAAAGAGTTTATATAGGATATCTCTAATAAAATTCCAATACATCATCTGACCAAAAATAGATTAAAGCCCAATACAAAAATATGAAATATAAGTTAGTATTCATAGCTCAACCTATATAATTCAAGACATTTCAACAAATGTCCACCATGACGTGAACTCTTCAACCGATAAAATAGATTTACCAGCTATAGTCATACTTTTGAAATGTACTTGTAATTGAGAATACGAAATACTTCAGTGAAAGGTGCTTACATAAGTGTTATAGTGAGAGATGCTCATGAAATACTGTCTTGAGAGGGACGATTGTTGCCTTTCAAACGTAATTCAGATAGATTGATGAGTAAACTTTTTAGTGGGCTCAAGTGTAATTATGAAATTTAAACATCAATGGGTGTATTTCTTTTCTTATAGAGTGCTTTTTAAAATTTGGCATATTAGATGTAAGTAGAAATTTAAACATCAAACCTTGAAAAGGAAAAAATGTTCCTTTCGTTTTAATCAATAGAATAGGGCTCGAATTGACAGTTCAATTGCACACATATAGTCATGCAATCTATTAGAAAGAGAAAAATGCAAAGAAAAGTGAGGCTAATGGGCTTGAAAAATAAACGTGCAAAGTTGTTTTCAAAATAACCACAATAATGTGGGAAAGTTGGTGGAGTGTTCTTTGCTCCTCCATATCCACACATCCAAACGCACCAAGGCAAGCCCATGGTCAAGGCTTGAAGGCCATTTTTCTAGTTTGTACTCATTTAATTTTTCTTCTTTTTGGGCGTGGGATTAGTGCGTTTACAAAGCAAGCAATGGCTCTTGTCCATAAACCCACTAAATCATCAAACCACATCTAA

mRNA sequence

ATGGCTGCCAGTGTGGCCATGGTGGAAGCTGGGCACGCCGATCACTTTCCCAAATGGAGCTCTGAGACTCTGTTTCCGTCCAAGCCGCGGCTGCAGAATTACGGCACGGCGGCGCCGGAGCCGGAGCCTGGCAATGGAAAAGATGGGGTAAAGGTGGTTGAGGCTGAAGATGCTCTGTATAAAGTTATAATAGGGCTCGAATTGACAGTTCAATTGCACACATATATTGTTTTCAAAATAACCACAATAATGTGGGAAAGTTGGTGGAGTGTTCTTTGCTCCTCCATATCCACACATCCAAACGCACCAAGGCAAGCCCATGGTCAAGGCTTGAAGGCCATTTTTCTAGTTTGTACTCATTTAATTTTTCTTCTTTTTGGGCGTGGGATTAGTGCGTTTACAAAGCAAGCAATGGCTCTTGTCCATAAACCCACTAAATCATCAAACCACATCTAA

Coding sequence (CDS)

ATGGCTGCCAGTGTGGCCATGGTGGAAGCTGGGCACGCCGATCACTTTCCCAAATGGAGCTCTGAGACTCTGTTTCCGTCCAAGCCGCGGCTGCAGAATTACGGCACGGCGGCGCCGGAGCCGGAGCCTGGCAATGGAAAAGATGGGGTAAAGGTGGTTGAGGCTGAAGATGCTCTGTATAAAGTTATAATAGGGCTCGAATTGACAGTTCAATTGCACACATATATTGTTTTCAAAATAACCACAATAATGTGGGAAAGTTGGTGGAGTGTTCTTTGCTCCTCCATATCCACACATCCAAACGCACCAAGGCAAGCCCATGGTCAAGGCTTGAAGGCCATTTTTCTAGTTTGTACTCATTTAATTTTTCTTCTTTTTGGGCGTGGGATTAGTGCGTTTACAAAGCAAGCAATGGCTCTTGTCCATAAACCCACTAAATCATCAAACCACATCTAA

Protein sequence

MAASVAMVEAGHADHFPKWSSETLFPSKPRLQNYGTAAPEPEPGNGKDGVKVVEAEDALYKVIIGLELTVQLHTYIVFKITTIMWESWWSVLCSSISTHPNAPRQAHGQGLKAIFLVCTHLIFLLFGRGISAFTKQAMALVHKPTKSSNHI
Homology
[Close]
BLAST of Sed0019205 vs. NCBI nr
Match: KAG7019648.1 (hypothetical protein SDJN02_18611, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 78.2 bits (191), Expect = 6.8e-11
Identity = 42/65 (64.62%), Postives = 50/65 (76.92%), Query Frame = 0 

Query: 2  AASVAMVEAGHADHFPKWSSETLFPSKPRLQNYGTAAPEPEPGN---GKDGVKVVEAEDA 61
          AASVA+VE GHADHF KW+SETLF SK R QN  TA+ E   G+   GKDG KVV+AED+
Sbjct: 11 AASVAVVEGGHADHFSKWNSETLFRSKRRFQNEDTASQELGAGSTGIGKDGEKVVKAEDS 70

Query: 62 LYKVI 64
          L+KV+
Sbjct: 71 LHKVM 75

[Close]
BLAST of Sed0019205 vs. NCBI nr
Match: KAG6584036.1 (hypothetical protein SDJN03_19968, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 78.2 bits (191), Expect = 6.8e-11
Identity = 42/65 (64.62%), Postives = 50/65 (76.92%), Query Frame = 0 

Query: 2   AASVAMVEAGHADHFPKWSSETLFPSKPRLQNYGTAAPEPEPGN---GKDGVKVVEAEDA 61
           AASVA+VE GHADHF KW+SETLF SK R QN  TA+ E   G+   GKDG KVV+AED+
Sbjct: 114 AASVAVVEGGHADHFSKWNSETLFRSKRRFQNEDTASQELGAGSTGIGKDGEKVVKAEDS 173

Query: 62  LYKVI 64
           L+KV+
Sbjct: 174 LHKVM 178

The following BLAST results are available for this feature:
BLAST of Sed0019205 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG7019648.16.8e-1164.62hypothetical protein SDJN02_18611, partial [Cucurbita argyrosperma subsp. argyro... [more]
KAG6584036.16.8e-1164.62hypothetical protein SDJN03_19968, partial [Cucurbita argyrosperma subsp. sorori... [more]
BLAST of Sed0019205 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Sed0019205 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Sed0019205 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Sed0019205.1Sed0019205.1mRNA