Sed0019180 (gene) Chayote v1

Overview


Name	Sed0019180
Type	gene
Organism	Sechium edule (Chayote v1)
Description	coiled-coil domain-containing protein 12-like
Location	LG01: 13254423 .. 13257694 (-)
RNA-Seq Expression	Sed0019180
Synteny	Sed0019180

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CTTTGACGCAAGAAATACTCCATTTCCTTCATTCCGCCATTGCTCGAAGCTTGTAAAGAAACTGTTGCGACTACAACTTTGTGAAAGAAATTGTAATTCCTCTTGAGTTTTTCTGTAAGAAATTGTTTCTCTCTGTGTTGTTTCTGCGCTGTCTACTGTTATTTTGCTTCCTTTTGATGAATTTTCGTCATCTATGGATATCTCGAAGGTTAATTTGATGAAATACTTGACTGTATACTTTTCAAAGATCTTGTAGTACCTGAATTTTTATGTAATTTTCCTTTTGCGATTCCTCATCCTTGATGAATGCATATAACTTTTGTATTGTCATAGTTTCTTTATCGAGAATAATCTATATTGATTTTTTTGTTATTTGATCATCAGATATTTTACGTTCTATAGGCAATGGCTACTGAGGAAGAATCTGTTGAACAAGTTGCTGCAGCACGTAAAGAGAGATTGAGAGCTCTGAAAGCTGCTCAAGAATTGTTAAACGCTCCAGATGAGAAAAGTACTGGAGGAGAGGATAAAGAGAATGGTGCTACTGCAGATGCCGAAGAAACGTGAGTTCATATCTTTTATCTTCCGCCAAAGATATGTACTATAATTTTTTTTTCACTTCGATTTTTAAGTTGAATCCCAGTAATGATTGCATTGTTCAAATTTTGTAATGTTTTTATCCTTTTCGTGGATAACTTTACTTGTTAGTTGTTACCGCAATTTTAATGTACAAGCAGGTTTAGTTTGGTTTAAAAGATCTAGCCTACGACTTCCAAGCTAAATGTAGGATCCTAAACCTAAAACTATAATCCTACTCATTTACGAATTACGACCTATAGATTTGAAGATTCAAGAATACAGAAACATGAATTGATTTGAAAGAAACCAATAGAGAAAGTTAATGCAGAATAATCCATTAAGATTTAAGGCTGCATCATTGTATGGAAATAAATTAGTTGCTCATGTCTCCCAGAAATTGAGACTTGACAAACAAAGATTCTATTGAAAGTAAAACTCTGAAGTAGATTAAGAGGAGAAAAGAACAGATTTGTCGATACTTTCCTGTCATGAATGCTTGTCTCCTGATCCTAGTAAAACTATGCTCATTAACGTTTGGAATGGTAGAGTTTGAGATGATTATGATGTGATGACAATGATGGTGAAAATATAGCTTAATTGTGTATTTATCTTTTGGGATAACACTCACCTTCCAAGGTAGATATATTTCCTCTTGCAAGTTGCAATAAATGACATTATTTTGTCCATTCAATATATGTTTAGTTTTAAATTGTTTGAAAAGTTGTTGTACACAATTACTATCCATGTTAAGTAGCCATTCTTTCTCCTCTTTTTTTGTTGTTGGATTTTTATGTGCCTTATTTGCCTTCAGTCCTCCATACACTAATAATAGATTATCATTTATCCTTTTTCAGTAATCTTAGTATGAAATTTCGAAATTATGTTCCTCATGATAAAGAGCTTCAGGAGGGTAAGCTTTCCCCACCTGTGTTGCCGAAGTTTGAGGACCCTGTTGCTACTGAACCTCCACAACCAAAAGAGGTATTTTTCTCAGTTCTGTTTTTATATGTTTTTAAACTGGCAGATGCTCGCACTTCTTGGATATATCTCTATTAATTGCTTTCGATCGGTTAAATTATAGGACACACTTGTAAATATTGCTCCAAAGAAACCAAACTGGGACCTCAGAAGGGATGTGCAGAAGAAGCTTGATAAGCTTGAAAGACGTACTCAGAAAGCATTATTCAAGCTTATGGGTAAGTAGAAATATTGATTTAGAGGTCCATGCAAACAGGATAAGTCCTTTTTTGCTCGTCCTTTTACTTGCTTCAATGGGTAGGTAGCGTAACTGAGCTTATCAAATTGAAAGTTGAAACCATTGCATGAAATAAGATGTTTTGGGAGTTAATATAGTTCTGTAAGGATAATTAAAAGTATTTATCTGGTTAAAAATCACAAGAAATTCTTTTGTAATTATAGTCCTCTTGTGAGTTGTGATTATGGGGACGAAGATGGGGCTCTATCTGGCTGGCCTCTAAGCTATTTGCTCTCCTTTTTTATTTCTATAGTACTCCACAAGTTTCTTAGAATTGTTTTTAGAGTATTTGGTCATCAGTTGTGAATCTCATGATTTTAACCAGTCTTCAATCTTGAAGTTTAAACCTGCTGGGCAGTTAAAAGTTCGAGGAATTTTTTTGGTGTCGAGGGAAGTTGTGGAGCTTTGAGTAGACTAGGGCCAGTTTAAGCCATAGCCCTCTAGTTATGAACTTTATATACTAATAAACTCGTGAAGAGAGGGAATGCTATAGAAAAGATCGATCTCTTTCAAGGAAGGTTGCTTATTTTTTCTTTATGTATTTTTAATGGACATTACATCACAAATATGTTGCCAGGCCATGAATGACGAACCCACAATCTTTAAAAGAAATTATTTTTCTTTTAAAGGAATCATCAAACCTATGAAACTACAATCTTTAAGAGGAATTAGCGTGTCTAATAGTTGTATTCAAGTTGGTGTAGGCTACTCTTATTAGCTAGTATGCATTGGAAGTTGCAAGAGTTTTGTTTTTGTAACTGGAAATCAAAGCTACCTCCACTACATACCCTTGGACACCCACGCCCGTCCCAAAGACTCGAACCTGAGTGACAACTGAAGATTTTATAATGAAGTTCACTCGTGGGTTTTAAATTTAGACCTTCAAAAGAACATATCTCGGAGACCTCAAACTCCTACCAACGAGGACACTCCTCAGAAGTTGCCAAAATAATTAAAATATGAGTTATTATAATAAGAATCATAAAAATGGTAGAAATTGTTGTGAAACACTGAAATTACAGAAGTGTTACACAATTAGAGCATCCTGCTTGCCGTTATGAACTTTATTGTTGTTTAATTCTTTGTAGAGGAACAAGAAAAGGAAAAGCAGTCAGCTGAAGGAGATGATGACCAAAATGTTACAGAGGGATAGTATGCTCTACACAAAGTTATGACCCAAAATGCTAATATTCACTACTACTCCCACATGCTTTGAGAAATTTGTCACTGAAGAAAAAATGGTCAGTTTTTCTGATTATTCTTGGCTGCAAATCTTTAGTTTTATATTCTGTGCCTTATGGTGTCTCTTACTGATAGTGATTTGTAATTTACCTACACTACTAGCTTAAACTAACTTTGTATTTCACTTATGATCTTCAATTATGAACCATTTTTTCCCCTTTTAAACTGAGTTTATAATTATGCACATTAACTTCGC

mRNA sequence

CTTTGACGCAAGAAATACTCCATTTCCTTCATTCCGCCATTGCTCGAAGCTTGTAAAGAAACTGTTGCGACTACAACTTTGTGAAAGAAATTGTAATTCCTCTTGAGTTTTTCTATATTTTACGTTCTATAGGCAATGGCTACTGAGGAAGAATCTGTTGAACAAGTTGCTGCAGCACGTAAAGAGAGATTGAGAGCTCTGAAAGCTGCTCAAGAATTGTTAAACGCTCCAGATGAGAAAAGTACTGGAGGAGAGGATAAAGAGAATGGTGCTACTGCAGATGCCGAAGAAACTAATCTTAGTATGAAATTTCGAAATTATGTTCCTCATGATAAAGAGCTTCAGGAGGGTAAGCTTTCCCCACCTGTGTTGCCGAAGTTTGAGGACCCTGTTGCTACTGAACCTCCACAACCAAAAGAGGACACACTTGTAAATATTGCTCCAAAGAAACCAAACTGGGACCTCAGAAGGGATGTGCAGAAGAAGCTTGATAAGCTTGAAAGACGTACTCAGAAAGCATTATTCAAGCTTATGGAGGAACAAGAAAAGGAAAAGCAGTCAGCTGAAGGAGATGATGACCAAAATGTTACAGAGGGATAGTATGCTCTACACAAAGTTATGACCCAAAATGCTAATATTCACTACTACTCCCACATGCTTTGAGAAATTTGTCACTGAAGAAAAAATGGTCAGTTTTTCTGATTATTCTTGGCTGCAAATCTTTAGTTTTATATTCTGTGCCTTATGGTGTCTCTTACTGATAGTGATTTGTAATTTACCTACACTACTAGCTTAAACTAACTTTGTATTTCACTTATGATCTTCAATTATGAACCATTTTTTCCCCTTTTAAACTGAGTTTATAATTATGCACATTAACTTCGC

Coding sequence (CDS)

ATGGCTACTGAGGAAGAATCTGTTGAACAAGTTGCTGCAGCACGTAAAGAGAGATTGAGAGCTCTGAAAGCTGCTCAAGAATTGTTAAACGCTCCAGATGAGAAAAGTACTGGAGGAGAGGATAAAGAGAATGGTGCTACTGCAGATGCCGAAGAAACTAATCTTAGTATGAAATTTCGAAATTATGTTCCTCATGATAAAGAGCTTCAGGAGGGTAAGCTTTCCCCACCTGTGTTGCCGAAGTTTGAGGACCCTGTTGCTACTGAACCTCCACAACCAAAAGAGGACACACTTGTAAATATTGCTCCAAAGAAACCAAACTGGGACCTCAGAAGGGATGTGCAGAAGAAGCTTGATAAGCTTGAAAGACGTACTCAGAAAGCATTATTCAAGCTTATGGAGGAACAAGAAAAGGAAAAGCAGTCAGCTGAAGGAGATGATGACCAAAATGTTACAGAGGGATAG

Protein sequence

MATEEESVEQVAAARKERLRALKAAQELLNAPDEKSTGGEDKENGATADAEETNLSMKFRNYVPHDKELQEGKLSPPVLPKFEDPVATEPPQPKEDTLVNIAPKKPNWDLRRDVQKKLDKLERRTQKALFKLMEEQEKEKQSAEGDDDQNVTEG

Homology

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BLAST of Sed0019180 vs. NCBI nr
Match: XP_023542240.1 (coiled-coil domain-containing protein 12-like [Cucurbita pepo subsp. pepo] >XP_023542241.1 coiled-coil domain-containing protein 12-like [Cucurbita pepo subsp. pepo] >XP_023542242.1 coiled-coil domain-containing protein 12-like [Cucurbita pepo subsp. pepo] >XP_023542243.1 coiled-coil domain-containing protein 12-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 262.3 bits (669), Expect = 2.6e-66
Identity = 139/154 (90.26%), Postives = 147/154 (95.45%), Query Frame = 0


Query: 1   MATEEESVEQVAAARKERLRALKAAQELLNAPDEKSTGGEDKENGATADAEETNLSMKFR 60
           MATEE+SVEQVAAAR+ERLRAL+AAQELLNAPDEK++GGEDKENGA AD EETNL MKFR
Sbjct: 1   MATEEDSVEQVAAARQERLRALRAAQELLNAPDEKTSGGEDKENGAAADTEETNLGMKFR 60

Query: 61  NYVPHDKELQEGKLSPPVLPKFEDPVATEPPQPKEDTLVNIAPKKPNWDLRRDVQKKLDK 120
           NYVPHDKELQEGKL+PPVLPKFEDPVATEPPQ KED  VNIAPKKPNWDLRRDVQKKLDK
Sbjct: 61  NYVPHDKELQEGKLAPPVLPKFEDPVATEPPQLKEDPFVNIAPKKPNWDLRRDVQKKLDK 120

Query: 121 LERRTQKALFKLMEEQEKEKQSAEGDDDQNVTEG 155
           LERRTQKAL+KLMEEQEK+KQSAEGDDDQN TEG
Sbjct: 121 LERRTQKALYKLMEEQEKQKQSAEGDDDQNDTEG 154

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BLAST of Sed0019180 vs. NCBI nr
Match: XP_022955111.1 (coiled-coil domain-containing protein 12-like [Cucurbita moschata] >XP_022955112.1 coiled-coil domain-containing protein 12-like [Cucurbita moschata] >XP_022955113.1 coiled-coil domain-containing protein 12-like [Cucurbita moschata] >XP_022955114.1 coiled-coil domain-containing protein 12-like [Cucurbita moschata])

HSP 1 Score: 258.5 bits (659), Expect = 3.8e-65
Identity = 137/154 (88.96%), Postives = 146/154 (94.81%), Query Frame = 0


Query: 1   MATEEESVEQVAAARKERLRALKAAQELLNAPDEKSTGGEDKENGATADAEETNLSMKFR 60
           MATEE+SVEQVAAAR+ERLRAL+AAQELLNAPDEK++GGED+ENGA AD EE NL MKFR
Sbjct: 1   MATEEDSVEQVAAARQERLRALRAAQELLNAPDEKTSGGEDQENGAAADTEEINLGMKFR 60

Query: 61  NYVPHDKELQEGKLSPPVLPKFEDPVATEPPQPKEDTLVNIAPKKPNWDLRRDVQKKLDK 120
           NYVPHDKELQEGKL+PPVLPKFEDPVATEPPQ KED  VNIAPKKPNWDLRRDVQKKLDK
Sbjct: 61  NYVPHDKELQEGKLAPPVLPKFEDPVATEPPQLKEDPFVNIAPKKPNWDLRRDVQKKLDK 120

Query: 121 LERRTQKALFKLMEEQEKEKQSAEGDDDQNVTEG 155
           LERRTQKAL+KLMEEQEK+KQSAEGDDDQN TEG
Sbjct: 121 LERRTQKALYKLMEEQEKQKQSAEGDDDQNDTEG 154

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BLAST of Sed0019180 vs. NCBI nr
Match: KAG6584286.1 (Coiled-coil domain-containing protein 12, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 258.5 bits (659), Expect = 3.8e-65
Identity = 137/153 (89.54%), Postives = 145/153 (94.77%), Query Frame = 0


Query: 1   MATEEESVEQVAAARKERLRALKAAQELLNAPDEKSTGGEDKENGATADAEETNLSMKFR 60
           MATE++SVEQVAAARKERLRAL+AAQELLN  DEK++GGEDKENGAT D EETNLSMKFR
Sbjct: 1   MATEDDSVEQVAAARKERLRALRAAQELLNTSDEKNSGGEDKENGATEDPEETNLSMKFR 60

Query: 61  NYVPHDKELQEGKLSPPVLPKFEDPVATEPPQPKEDTLVNIAPKKPNWDLRRDVQKKLDK 120
           NYVPHDKELQEGKL PPVLPKFEDPVATEPPQ KED  VNIAPKKPNWDLRRDVQKKLDK
Sbjct: 61  NYVPHDKELQEGKLVPPVLPKFEDPVATEPPQLKEDPFVNIAPKKPNWDLRRDVQKKLDK 120

Query: 121 LERRTQKALFKLMEEQEKEKQSAEGDDDQNVTE 154
           LERRTQKAL+KLMEEQEK+KQSAEGDDDQN+TE
Sbjct: 121 LERRTQKALYKLMEEQEKQKQSAEGDDDQNITE 153

[Close]

BLAST of Sed0019180 vs. NCBI nr
Match: KAG6572999.1 (Coiled-coil domain-containing protein 12, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 258.5 bits (659), Expect = 3.8e-65
Identity = 137/154 (88.96%), Postives = 146/154 (94.81%), Query Frame = 0


Query: 1   MATEEESVEQVAAARKERLRALKAAQELLNAPDEKSTGGEDKENGATADAEETNLSMKFR 60
           MATEE+SVEQVAAAR+ERLRAL+AAQELLNAPDEK++GGED+ENGA AD EE NL MKFR
Sbjct: 1   MATEEDSVEQVAAARQERLRALRAAQELLNAPDEKTSGGEDQENGAAADTEEINLGMKFR 60

Query: 61  NYVPHDKELQEGKLSPPVLPKFEDPVATEPPQPKEDTLVNIAPKKPNWDLRRDVQKKLDK 120
           NYVPHDKELQEGKL+PPVLPKFEDPVATEPPQ KED  VNIAPKKPNWDLRRDVQKKLDK
Sbjct: 61  NYVPHDKELQEGKLAPPVLPKFEDPVATEPPQLKEDPFVNIAPKKPNWDLRRDVQKKLDK 120

Query: 121 LERRTQKALFKLMEEQEKEKQSAEGDDDQNVTEG 155
           LERRTQKAL+KLMEEQEK+KQSAEGDDDQN TEG
Sbjct: 121 LERRTQKALYKLMEEQEKQKQSAEGDDDQNDTEG 154

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BLAST of Sed0019180 vs. NCBI nr
Match: XP_038894163.1 (coiled-coil domain-containing protein 12 [Benincasa hispida])

HSP 1 Score: 258.1 bits (658), Expect = 4.9e-65
Identity = 138/154 (89.61%), Postives = 146/154 (94.81%), Query Frame = 0


Query: 1   MATEEESVEQVAAARKERLRALKAAQELLNAPDEKSTGGEDKENGATADAEETNLSMKFR 60
           MATEE+SVEQVAAARKERLRAL+AAQELLNA DEK++GGEDKENGATADAEETNL+MKFR
Sbjct: 1   MATEEDSVEQVAAARKERLRALRAAQELLNASDEKNSGGEDKENGATADAEETNLNMKFR 60

Query: 61  NYVPHDKELQEGKLSPPVLPKFEDPVATEPPQPKEDTLVNIAPKKPNWDLRRDVQKKLDK 120
           NYVPHDKELQEGKL+PPVLPKFEDPV TEP Q KED  VNIAPKKPNWDLRRDVQKKLDK
Sbjct: 61  NYVPHDKELQEGKLAPPVLPKFEDPVTTEPAQLKEDPFVNIAPKKPNWDLRRDVQKKLDK 120

Query: 121 LERRTQKALFKLMEEQEKEKQSAEGDDDQNVTEG 155
           LERRTQKAL+KLMEEQEK+KQSAEGDDDQN  EG
Sbjct: 121 LERRTQKALYKLMEEQEKQKQSAEGDDDQNGAEG 154

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BLAST of Sed0019180 vs. ExPASy Swiss-Prot
Match: Q8WUD4 (Coiled-coil domain-containing protein 12 OS=Homo sapiens OX=9606 GN=CCDC12 PE=1 SV=1)

HSP 1 Score: 72.8 bits (177), Expect = 3.8e-12
Identity = 53/150 (35.33%), Postives = 91/150 (60.67%), Query Frame = 0


Query: 8   VEQVAAARKERLRALKAAQELLNAPDEKSTGGEDKENG--------ATADAEETNLSMKF 67
           +E+ A  RKERL+AL+           + TG +DKE+G           +  E +  ++ 
Sbjct: 11  LEEEALRRKERLKALR-----------EKTGRKDKEDGEPKTKHLREEEEEGEKHRELRL 70

Query: 68  RNYVPHDKELQEGKL--SPPVL--PKFEDPVATEPPQP--KEDTLVNIAPKKPNWDLRRD 127
           RNYVP D++L++ ++  + PV    K ++ +    P+P  +E  L N+AP+KP+WDL+RD
Sbjct: 71  RNYVPEDEDLKKRRVPQAKPVAVEEKVKEQLEAAKPEPVIEEVDLANLAPRKPDWDLKRD 130

Query: 128 VQKKLDKLERRTQKALFKLMEEQEKEKQSA 144
           V KKL+KL++RTQ+A+ +L+ E+ K ++ +
Sbjct: 131 VAKKLEKLKKRTQRAIAELIRERLKGQEDS 149

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BLAST of Sed0019180 vs. ExPASy Swiss-Prot
Match: Q8R344 (Coiled-coil domain-containing protein 12 OS=Mus musculus OX=10090 GN=Ccdc12 PE=1 SV=2)

HSP 1 Score: 72.0 bits (175), Expect = 6.6e-12
Identity = 54/150 (36.00%), Postives = 91/150 (60.67%), Query Frame = 0


Query: 8   VEQVAAARKERLRALKAAQELLNAPDEKSTGGEDKENG------ATADAEET--NLSMKF 67
           +E+ A  RKERL+AL+           + TG +D+E+G         + EE   +  ++ 
Sbjct: 11  LEEEALRRKERLKALR-----------EKTGRKDREDGEPQTKQLREEGEEVGKHRGLRL 70

Query: 68  RNYVPHDKELQEGKL--SPPVL--PKFEDPVATEPPQP--KEDTLVNIAPKKPNWDLRRD 127
           RNYVP D++L+  ++  + PV    K ++ +    P+P  +E  L N+AP+KP+WDL+RD
Sbjct: 71  RNYVPEDEDLKRRRVPQAKPVAVEEKVKEQLEAAKPEPVIEEVDLANLAPRKPDWDLKRD 130

Query: 128 VQKKLDKLERRTQKALFKLMEEQEKEKQSA 144
           V KKL+KLE+RTQ+A+ +L+ E+ K ++ +
Sbjct: 131 VAKKLEKLEKRTQRAIAELIRERLKGQEDS 149

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BLAST of Sed0019180 vs. ExPASy TrEMBL
Match: A0A6J1GST8 (coiled-coil domain-containing protein 12-like OS=Cucurbita moschata OX=3662 GN=LOC111457177 PE=4 SV=1)

HSP 1 Score: 258.5 bits (659), Expect = 1.8e-65
Identity = 137/154 (88.96%), Postives = 146/154 (94.81%), Query Frame = 0


Query: 1   MATEEESVEQVAAARKERLRALKAAQELLNAPDEKSTGGEDKENGATADAEETNLSMKFR 60
           MATEE+SVEQVAAAR+ERLRAL+AAQELLNAPDEK++GGED+ENGA AD EE NL MKFR
Sbjct: 1   MATEEDSVEQVAAARQERLRALRAAQELLNAPDEKTSGGEDQENGAAADTEEINLGMKFR 60

Query: 61  NYVPHDKELQEGKLSPPVLPKFEDPVATEPPQPKEDTLVNIAPKKPNWDLRRDVQKKLDK 120
           NYVPHDKELQEGKL+PPVLPKFEDPVATEPPQ KED  VNIAPKKPNWDLRRDVQKKLDK
Sbjct: 61  NYVPHDKELQEGKLAPPVLPKFEDPVATEPPQLKEDPFVNIAPKKPNWDLRRDVQKKLDK 120

Query: 121 LERRTQKALFKLMEEQEKEKQSAEGDDDQNVTEG 155
           LERRTQKAL+KLMEEQEK+KQSAEGDDDQN TEG
Sbjct: 121 LERRTQKALYKLMEEQEKQKQSAEGDDDQNDTEG 154

[Close]

BLAST of Sed0019180 vs. ExPASy TrEMBL
Match: A0A6J1JYP1 (coiled-coil domain-containing protein 12-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111490058 PE=4 SV=1)

HSP 1 Score: 257.7 bits (657), Expect = 3.1e-65
Identity = 136/154 (88.31%), Postives = 145/154 (94.16%), Query Frame = 0


Query: 1   MATEEESVEQVAAARKERLRALKAAQELLNAPDEKSTGGEDKENGATADAEETNLSMKFR 60
           MATEE+SVEQVAAAR+ERLRAL+ AQELLNAPDEK++GGED+ENG  AD EETNL MKFR
Sbjct: 1   MATEEDSVEQVAAARQERLRALRTAQELLNAPDEKTSGGEDQENGTAADTEETNLGMKFR 60

Query: 61  NYVPHDKELQEGKLSPPVLPKFEDPVATEPPQPKEDTLVNIAPKKPNWDLRRDVQKKLDK 120
           NYVPHDKELQEGKL+PPVLPKFEDPVATEPPQ KED  VNIAPKKPNWDLRRDVQKKLDK
Sbjct: 61  NYVPHDKELQEGKLAPPVLPKFEDPVATEPPQLKEDPFVNIAPKKPNWDLRRDVQKKLDK 120

Query: 121 LERRTQKALFKLMEEQEKEKQSAEGDDDQNVTEG 155
           LERRTQKAL+KLMEEQEK+KQSAEGDDDQN TEG
Sbjct: 121 LERRTQKALYKLMEEQEKQKQSAEGDDDQNGTEG 154

[Close]

BLAST of Sed0019180 vs. ExPASy TrEMBL
Match: A0A6J1E719 (coiled-coil domain-containing protein 12-like OS=Cucurbita moschata OX=3662 GN=LOC111431306 PE=4 SV=1)

HSP 1 Score: 252.3 bits (643), Expect = 1.3e-63
Identity = 137/156 (87.82%), Postives = 145/156 (92.95%), Query Frame = 0


Query: 1   MATEEESVEQVAAARKERLRALKAAQELLNAPDEKSTGGEDKENGAT---ADAEETNLSM 60
           MATE++SVEQVAAARKERLRAL+AAQELLNA DEK++GGEDKENGAT    D EETNLSM
Sbjct: 1   MATEDDSVEQVAAARKERLRALRAAQELLNASDEKNSGGEDKENGATEDPEDPEETNLSM 60

Query: 61  KFRNYVPHDKELQEGKLSPPVLPKFEDPVATEPPQPKEDTLVNIAPKKPNWDLRRDVQKK 120
           KFRNYVPHDKELQEGKL PP LPKFEDPVATEPPQ KED  VNIAPKKPNWDLRRDVQKK
Sbjct: 61  KFRNYVPHDKELQEGKLVPPELPKFEDPVATEPPQLKEDPFVNIAPKKPNWDLRRDVQKK 120

Query: 121 LDKLERRTQKALFKLMEEQEKEKQSAEGDDDQNVTE 154
           LDKLERRTQKAL+KLMEEQEK+KQSAEGDDDQN+TE
Sbjct: 121 LDKLERRTQKALYKLMEEQEKQKQSAEGDDDQNITE 156

[Close]

BLAST of Sed0019180 vs. ExPASy TrEMBL
Match: A0A6J1DLK0 (coiled-coil domain-containing protein 12 isoform X1 OS=Momordica charantia OX=3673 GN=LOC111022269 PE=4 SV=1)

HSP 1 Score: 250.8 bits (639), Expect = 3.8e-63
Identity = 133/154 (86.36%), Postives = 143/154 (92.86%), Query Frame = 0


Query: 1   MATEEESVEQVAAARKERLRALKAAQELLNAPDEKSTGGEDKENGATADAEETNLSMKFR 60
           MATEE+SVEQVAAARKERLRAL+AAQELLN PDEK++GGEDK+NG   D EETNLSMKFR
Sbjct: 1   MATEEDSVEQVAAARKERLRALRAAQELLNTPDEKTSGGEDKDNGVIEDTEETNLSMKFR 60

Query: 61  NYVPHDKELQEGKLSPPVLPKFEDPVATEPPQPKEDTLVNIAPKKPNWDLRRDVQKKLDK 120
           NYVPHDKELQEGKL+PPVLPKFEDPVA EPPQ KED  VNIAPKKPNWDLRRDVQKKLDK
Sbjct: 61  NYVPHDKELQEGKLAPPVLPKFEDPVANEPPQLKEDPFVNIAPKKPNWDLRRDVQKKLDK 120

Query: 121 LERRTQKALFKLMEEQEKEKQSAEGDDDQNVTEG 155
           LERRTQKAL+KLM+EQEK+K+SAEGDD QN TEG
Sbjct: 121 LERRTQKALYKLMKEQEKQKESAEGDDVQNGTEG 154

[Close]

BLAST of Sed0019180 vs. ExPASy TrEMBL
Match: A0A1S3ATB1 (coiled-coil domain-containing protein 12 OS=Cucumis melo OX=3656 GN=LOC103482658 PE=4 SV=1)

HSP 1 Score: 249.6 bits (636), Expect = 8.5e-63
Identity = 132/153 (86.27%), Postives = 143/153 (93.46%), Query Frame = 0


Query: 1   MATEEESVEQVAAARKERLRALKAAQELLNAPDEKSTGGEDKENGATADAEETNLSMKFR 60
           MATEE+S EQVAAARKERL+AL+AAQELLNA DEK++ GEDKENGATAD +ETNL+MKFR
Sbjct: 1   MATEEDSFEQVAAARKERLKALRAAQELLNASDEKNSVGEDKENGATADTDETNLNMKFR 60

Query: 61  NYVPHDKELQEGKLSPPVLPKFEDPVATEPPQPKEDTLVNIAPKKPNWDLRRDVQKKLDK 120
           NYVPHDKELQEGKL+PPVLPKFEDPV TEPPQ KED  VNIAPKKPNWDLRRDVQKKLDK
Sbjct: 61  NYVPHDKELQEGKLAPPVLPKFEDPVTTEPPQQKEDPFVNIAPKKPNWDLRRDVQKKLDK 120

Query: 121 LERRTQKALFKLMEEQEKEKQSAEGDDDQNVTE 154
           LERRTQKAL+KLMEEQEK+KQ+AEGDDDQN  E
Sbjct: 121 LERRTQKALYKLMEEQEKQKQAAEGDDDQNGAE 153

[Close]

BLAST of Sed0019180 vs. TAIR 10
Match: AT3G05070.1 (CONTAINS InterPro DOMAIN/s: mRNA splicing factor, Cwf18 (InterPro:IPR013169); Has 292 Blast hits to 292 proteins in 153 species: Archae - 0; Bacteria - 0; Metazoa - 118; Fungi - 83; Plants - 38; Viruses - 11; Other Eukaryotes - 42 (source: NCBI BLink). )

HSP 1 Score: 169.1 bits (427), Expect = 2.8e-42
Identity = 98/148 (66.22%), Postives = 112/148 (75.68%), Query Frame = 0


Query: 1   MATEEESVEQVAAARKERLRALKAAQELLNAPDEKSTGGEDKENGATADAEETNLSMKFR 60
           MA+E+ES+EQ AAARKE L+AL+AAQEL           E KE+G     EE   +MKFR
Sbjct: 1   MASEDESIEQKAAARKEALKALRAAQEL----------SETKEDGEDEAVEEDGPAMKFR 60

Query: 61  NYVPHDKELQEGKLSPPVLPKFEDPVATEPP--QPKEDTLVNIAPKKPNWDLRRDVQKKL 120
           NYVP  KELQ+GKL+PP LPKFEDP+   PP  + KED  VNIAPKKPNWDLRRDVQKKL
Sbjct: 61  NYVPQAKELQDGKLAPPELPKFEDPIVALPPAVEKKEDPFVNIAPKKPNWDLRRDVQKKL 120

Query: 121 DKLERRTQKALFKLMEEQEKEKQSAEGD 147
           DKLERRTQKA+ KLMEEQEKE++ AE D
Sbjct: 121 DKLERRTQKAMHKLMEEQEKEREMAEAD 138

The following BLAST results are available for this feature:

BLAST of Sed0019180 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023542240.1	2.6e-66	90.26	coiled-coil domain-containing protein 12-like [Cucurbita pepo subsp. pepo] >XP_0...	[more]
XP_022955111.1	3.8e-65	88.96	coiled-coil domain-containing protein 12-like [Cucurbita moschata] >XP_022955112...	[more]
KAG6584286.1	3.8e-65	89.54	Coiled-coil domain-containing protein 12, partial [Cucurbita argyrosperma subsp....	[more]
KAG6572999.1	3.8e-65	88.96	Coiled-coil domain-containing protein 12, partial [Cucurbita argyrosperma subsp....	[more]
XP_038894163.1	4.9e-65	89.61	coiled-coil domain-containing protein 12 [Benincasa hispida]	[more]

BLAST of Sed0019180 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8WUD4	3.8e-12	35.33	Coiled-coil domain-containing protein 12 OS=Homo sapiens OX=9606 GN=CCDC12 PE=1 ...	[more]
Q8R344	6.6e-12	36.00	Coiled-coil domain-containing protein 12 OS=Mus musculus OX=10090 GN=Ccdc12 PE=1...	[more]

BLAST of Sed0019180 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1GST8	1.8e-65	88.96	coiled-coil domain-containing protein 12-like OS=Cucurbita moschata OX=3662 GN=L...	[more]
A0A6J1JYP1	3.1e-65	88.31	coiled-coil domain-containing protein 12-like isoform X1 OS=Cucurbita maxima OX=...	[more]
A0A6J1E719	1.3e-63	87.82	coiled-coil domain-containing protein 12-like OS=Cucurbita moschata OX=3662 GN=L...	[more]
A0A6J1DLK0	3.8e-63	86.36	coiled-coil domain-containing protein 12 isoform X1 OS=Momordica charantia OX=36...	[more]
A0A1S3ATB1	8.5e-63	86.27	coiled-coil domain-containing protein 12 OS=Cucumis melo OX=3656 GN=LOC103482658...	[more]

BLAST of Sed0019180 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G05070.1	2.8e-42	66.22	CONTAINS InterPro DOMAIN/s: mRNA splicing factor, Cwf18 (InterPro:IPR013169); Ha...	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 118..138
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 70..104
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 130..154
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 34..48
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 130..147
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 26..55
IPR013169	mRNA splicing factor Cwf18-like	PFAM	PF08315	cwf18	coord: 8..135 e-value: 2.9E-33 score: 115.4
IPR013169	mRNA splicing factor Cwf18-like	PANTHER	PTHR31551	PRE-MRNA-SPLICING FACTOR CWF18	coord: 1..144

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0019180.1	Sed0019180.1	mRNA
Sed0019180.2	Sed0019180.2	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0071014	post-mRNA release spliceosomal complex
cellular_component	GO:0005684	U2-type spliceosomal complex