Sed0019170 (gene) Chayote v1

Overview
NameSed0019170
Typegene
OrganismSechium edule (Chayote v1)
DescriptionUnknown protein
LocationLG12: 6428495 .. 6428689 (-)
RNA-Seq ExpressionSed0019170
SyntenySed0019170
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexonpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTCATCTTTCTTTTTCTTTTGCAGGTTCAGCCAAACGTTGCTGGTAGGATTCTGCATGAGAAGGCATTAATGGTTAGAATAAGGGAGGTGGAGCTGAAGCTGCAGTCGCTTCAGAGGGTTGACGTACCGCCCTCGGGCCCCTCCGGTTTGACCTTCATTCCCGGCACCAATGGCCCTGGCTGCCCCCCTTAA

mRNA sequence

ATGGTCATCTTTCTTTTTCTTTTGCAGGTTCAGCCAAACGTTGCTGGTAGGATTCTGCATGAGAAGGCATTAATGGTTAGAATAAGGGAGGTGGAGCTGAAGCTGCAGTCGCTTCAGAGGGTTGACGTACCGCCCTCGGGCCCCTCCGGTTTGACCTTCATTCCCGGCACCAATGGCCCTGGCTGCCCCCCTTAA

Coding sequence (CDS)

ATGGTCATCTTTCTTTTTCTTTTGCAGGTTCAGCCAAACGTTGCTGGTAGGATTCTGCATGAGAAGGCATTAATGGTTAGAATAAGGGAGGTGGAGCTGAAGCTGCAGTCGCTTCAGAGGGTTGACGTACCGCCCTCGGGCCCCTCCGGTTTGACCTTCATTCCCGGCACCAATGGCCCTGGCTGCCCCCCTTAA

Protein sequence

MVIFLFLLQVQPNVAGRILHEKALMVRIREVELKLQSLQRVDVPPSGPSGLTFIPGTNGPGCPP
Homology
BLAST of Sed0019170 vs. NCBI nr
Match: KGN56901.1 (hypothetical protein Csa_009866 [Cucumis sativus])

HSP 1 Score: 97.1 bits (240), Expect = 6.0e-17
Identity = 49/63 (77.78%), Postives = 52/63 (82.54%), Query Frame = 0

Query: 1  MVIFLFLLQVQPNVAGRILHEKALMVRIREVELKLQSLQRVDVPPSGPSGLTFIPGTNGP 60
          M I L LLQ+QPN+AGR LHEK  MVR  E+ LKLQSLQRV VPPSGPSG TFIPGTNGP
Sbjct: 1  MAILLLLLQLQPNLAGRTLHEKPPMVRRMELNLKLQSLQRVSVPPSGPSGCTFIPGTNGP 60

Query: 61 GCP 64
          GCP
Sbjct: 61 GCP 63

BLAST of Sed0019170 vs. NCBI nr
Match: KAA0049291.1 (putative transmembrane protein [Cucumis melo var. makuwa])

HSP 1 Score: 94.7 bits (234), Expect = 3.0e-16
Identity = 47/59 (79.66%), Postives = 50/59 (84.75%), Query Frame = 0

Query: 5  LFLLQVQPNVAGRILHEKALMVRIREVELKLQSLQRVDVPPSGPSGLTFIPGTNGPGCP 64
          L LLQ+QPN+AGR LHEK  MVR  E+ LKLQSLQRV VPPSGPSG TFIPGTNGPGCP
Sbjct: 4  LLLLQLQPNLAGRTLHEKPPMVRRMELNLKLQSLQRVSVPPSGPSGCTFIPGTNGPGCP 62

BLAST of Sed0019170 vs. NCBI nr
Match: TYK17267.1 (putative transmembrane protein [Cucumis melo var. makuwa])

HSP 1 Score: 94.7 bits (234), Expect = 3.0e-16
Identity = 47/59 (79.66%), Postives = 50/59 (84.75%), Query Frame = 0

Query: 5  LFLLQVQPNVAGRILHEKALMVRIREVELKLQSLQRVDVPPSGPSGLTFIPGTNGPGCP 64
          L LLQ+QPN+AGR LHEK  MVR  E+ LKLQSLQRV VPPSGPSG TFIPGTNGPGCP
Sbjct: 13 LLLLQLQPNLAGRTLHEKPPMVRRMELNLKLQSLQRVSVPPSGPSGCTFIPGTNGPGCP 71

BLAST of Sed0019170 vs. NCBI nr
Match: KAG6582361.1 (hypothetical protein SDJN03_22363, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 87.8 bits (216), Expect = 3.7e-14
Identity = 46/66 (69.70%), Postives = 51/66 (77.27%), Query Frame = 0

Query: 3  IFLF-----LLQVQPNVAGRILHEKALMVRIREVELKLQSLQRVDVPPSGPSGLTFIPGT 62
          +FLF     LL + PN+AGR LHE   MVR  E++LKLQSLQRV VPPSGPSG TFIPGT
Sbjct: 1  MFLFKSKLPLLVLHPNIAGRTLHENPSMVRRTELKLKLQSLQRVSVPPSGPSGCTFIPGT 60

Query: 63 NGPGCP 64
          NGPGCP
Sbjct: 61 NGPGCP 66

BLAST of Sed0019170 vs. NCBI nr
Match: KAG6597386.1 (hypothetical protein SDJN03_10566, partial [Cucurbita argyrosperma subsp. sororia] >KAG7028845.1 hypothetical protein SDJN02_10027, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 87.0 bits (214), Expect = 6.3e-14
Identity = 48/67 (71.64%), Postives = 50/67 (74.63%), Query Frame = 0

Query: 1  MVIFLFLLQVQPNVAGRILHEKALMVRIREVE----LKLQSLQRVDVPPSGPSGLTFIPG 60
          M   L LLQ+ PN AGR L EK  MVR RE+E    LKLQSLQRV VPPSGPSG TFIPG
Sbjct: 1  MAFILILLQLLPNAAGRTLPEKPAMVRRRELEMELKLKLQSLQRVRVPPSGPSGCTFIPG 60

Query: 61 TNGPGCP 64
          TNGPGCP
Sbjct: 61 TNGPGCP 67

BLAST of Sed0019170 vs. ExPASy TrEMBL
Match: A0A0A0LA00 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G142940 PE=4 SV=1)

HSP 1 Score: 97.1 bits (240), Expect = 2.9e-17
Identity = 49/63 (77.78%), Postives = 52/63 (82.54%), Query Frame = 0

Query: 1  MVIFLFLLQVQPNVAGRILHEKALMVRIREVELKLQSLQRVDVPPSGPSGLTFIPGTNGP 60
          M I L LLQ+QPN+AGR LHEK  MVR  E+ LKLQSLQRV VPPSGPSG TFIPGTNGP
Sbjct: 1  MAILLLLLQLQPNLAGRTLHEKPPMVRRMELNLKLQSLQRVSVPPSGPSGCTFIPGTNGP 60

Query: 61 GCP 64
          GCP
Sbjct: 61 GCP 63

BLAST of Sed0019170 vs. ExPASy TrEMBL
Match: A0A5D3CZY7 (Putative transmembrane protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold434G001200 PE=4 SV=1)

HSP 1 Score: 94.7 bits (234), Expect = 1.5e-16
Identity = 47/59 (79.66%), Postives = 50/59 (84.75%), Query Frame = 0

Query: 5  LFLLQVQPNVAGRILHEKALMVRIREVELKLQSLQRVDVPPSGPSGLTFIPGTNGPGCP 64
          L LLQ+QPN+AGR LHEK  MVR  E+ LKLQSLQRV VPPSGPSG TFIPGTNGPGCP
Sbjct: 13 LLLLQLQPNLAGRTLHEKPPMVRRMELNLKLQSLQRVSVPPSGPSGCTFIPGTNGPGCP 71

BLAST of Sed0019170 vs. ExPASy TrEMBL
Match: A0A5A7U6N3 (Putative transmembrane protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold171G005320 PE=4 SV=1)

HSP 1 Score: 94.7 bits (234), Expect = 1.5e-16
Identity = 47/59 (79.66%), Postives = 50/59 (84.75%), Query Frame = 0

Query: 5  LFLLQVQPNVAGRILHEKALMVRIREVELKLQSLQRVDVPPSGPSGLTFIPGTNGPGCP 64
          L LLQ+QPN+AGR LHEK  MVR  E+ LKLQSLQRV VPPSGPSG TFIPGTNGPGCP
Sbjct: 4  LLLLQLQPNLAGRTLHEKPPMVRRMELNLKLQSLQRVSVPPSGPSGCTFIPGTNGPGCP 62

BLAST of Sed0019170 vs. ExPASy TrEMBL
Match: A0A5N6QYI5 (Uncharacterized protein OS=Carpinus fangiana OX=176857 GN=FH972_008369 PE=4 SV=1)

HSP 1 Score: 63.9 bits (154), Expect = 2.7e-07
Identity = 36/63 (57.14%), Postives = 42/63 (66.67%), Query Frame = 0

Query: 1  MVIFLFLLQVQPNVAGRILHEKALMVRIREVELKLQSLQRVDVPPSGPSGLTFIPGTNGP 60
          M++ LFLL VQ   A R LH         E +++LQSLQR DVPPSG SG T+IPGT GP
Sbjct: 10 MLLLLFLLHVQLYEASRPLH--------AEEDVRLQSLQRGDVPPSGASGCTYIPGTGGP 64

Query: 61 GCP 64
          GCP
Sbjct: 70 GCP 64

BLAST of Sed0019170 vs. ExPASy TrEMBL
Match: A0A5N6R1J5 (Uncharacterized protein OS=Carpinus fangiana OX=176857 GN=FH972_008371 PE=4 SV=1)

HSP 1 Score: 62.0 bits (149), Expect = 1.0e-06
Identity = 35/63 (55.56%), Postives = 42/63 (66.67%), Query Frame = 0

Query: 1  MVIFLFLLQVQPNVAGRILHEKALMVRIREVELKLQSLQRVDVPPSGPSGLTFIPGTNGP 60
          M++ LFLL VQ   A R LH         E +++LQSLQR +VPPSG SG T+IPGT GP
Sbjct: 1  MLLLLFLLHVQLYEASRPLH--------AEEDVRLQSLQRGNVPPSGASGCTYIPGTGGP 55

Query: 61 GCP 64
          GCP
Sbjct: 61 GCP 55

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KGN56901.16.0e-1777.78hypothetical protein Csa_009866 [Cucumis sativus][more]
KAA0049291.13.0e-1679.66putative transmembrane protein [Cucumis melo var. makuwa][more]
TYK17267.13.0e-1679.66putative transmembrane protein [Cucumis melo var. makuwa][more]
KAG6582361.13.7e-1469.70hypothetical protein SDJN03_22363, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAG6597386.16.3e-1471.64hypothetical protein SDJN03_10566, partial [Cucurbita argyrosperma subsp. sorori... [more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0LA002.9e-1777.78Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G142940 PE=4 SV=1[more]
A0A5D3CZY71.5e-1679.66Putative transmembrane protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_s... [more]
A0A5A7U6N31.5e-1679.66Putative transmembrane protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_s... [more]
A0A5N6QYI52.7e-0757.14Uncharacterized protein OS=Carpinus fangiana OX=176857 GN=FH972_008369 PE=4 SV=1[more]
A0A5N6R1J51.0e-0655.56Uncharacterized protein OS=Carpinus fangiana OX=176857 GN=FH972_008371 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR33592FAMILY NOT NAMEDcoord: 2..62
NoneNo IPR availablePANTHERPTHR33592:SF5TRANSMEMBRANE PROTEINcoord: 2..62

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Sed0019170.1Sed0019170.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0016021 integral component of membrane