Sed0019156 (gene) Chayote v1

Overview


Name	Sed0019156
Type	gene
Organism	Sechium edule (Chayote v1)
Description	Ubiquinone biosynthesis monooxygenase COQ6-like
Location	LG09: 33427124 .. 33427471 (+)
RNA-Seq Expression	Sed0019156
Synteny	Sed0019156

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ACAAAACCAACTTTGAGCTATATGTTGAGGAGAGAAGCCATGGCCACATCAATGTGTTCGAGCTCCACTGGGCTAGTTGGCTGGTGTCGCCCACGGCGACGGTCGAGACGACGTCGTGGAAGCACAATTCGTCTTGGGAATCGGCGGCGAGGTTTCTGTCTCGGGTCACGAGTCGTGGTTGGGCCTTTTCGGATGCTCAAGAGGTTGATTATGGACTTGGCTCCAAATGAGAAGTTGATAGAGGCTTATTACTCACTTTTGCCATTTTTACGTCCAACTTTGTTCCCTCTTAGTTGATGAAAATGTGCTTATTATTATATGAGTGAATGAAAAGCATTTTCATTTGGG

mRNA sequence

ACAAAACCAACTTTGAGCTATATGTTGAGGAGAGAAGCCATGGCCACATCAATGTGTTCGAGCTCCACTGGGCTAGTTGGCTGGTGTCGCCCACGGCGACGGTCGAGACGACGTCGTGGAAGCACAATTCGTCTTGGGAATCGGCGGCGAGGTTTCTGTCTCGGGTCACGAGTCGTGGTTGGGCCTTTTCGGATGCTCAAGAGGTTGATTATGGACTTGGCTCCAAATGAGAAGTTGATAGAGGCTTATTACTCACTTTTGCCATTTTTACGTCCAACTTTGTTCCCTCTTAGTTGATGAAAATGTGCTTATTATTATATGAGTGAATGAAAAGCATTTTCATTTGGG

Coding sequence (CDS)

ATGTTGAGGAGAGAAGCCATGGCCACATCAATGTGTTCGAGCTCCACTGGGCTAGTTGGCTGGTGTCGCCCACGGCGACGGTCGAGACGACGTCGTGGAAGCACAATTCGTCTTGGGAATCGGCGGCGAGGTTTCTGTCTCGGGTCACGAGTCGTGGTTGGGCCTTTTCGGATGCTCAAGAGGTTGATTATGGACTTGGCTCCAAATGAGAAGTTGATAGAGGCTTATTACTCACTTTTGCCATTTTTACGTCCAACTTTGTTCCCTCTTAGTTGA

Protein sequence

MLRREAMATSMCSSSTGLVGWCRPRRRSRRRRGSTIRLGNRRRGFCLGSRVVVGPFRMLKRLIMDLAPNEKLIEAYYSLLPFLRPTLFPLS

Homology

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BLAST of Sed0019156 vs. NCBI nr
Match: XP_018827516.1 (uncharacterized protein LOC108996201 [Juglans regia] >XP_040993736.1 uncharacterized protein LOC121240377 [Juglans microcarpa x Juglans regia])

HSP 1 Score: 125.6 bits (314), Expect = 2.3e-25
Identity = 68/97 (70.10%), Postives = 78/97 (80.41%), Query Frame = 0


Query: 1  MLRREAMATSMCSSSTGLVGWCRPRRRSRRRRGSTIRLGNRRRGFCLGSR------VVVG 60
          MLRR ++  SM S+ST LVGWCRPRRR RRR+GSTIRLGN+RRG CLGSR      V++G
Sbjct: 1  MLRRGSLTISMLSNSTMLVGWCRPRRRLRRRKGSTIRLGNKRRGLCLGSRPVVQWGVMMG 60

Query: 61 PFRMLKRLIMDLAPNEKLIEAYY-SLLPFLRPTLFPL 91
          P RMLK++IMD+APN  LIEAYY SL PFLRP LFPL
Sbjct: 61 PLRMLKKIIMDMAPNGLLIEAYYRSLTPFLRPQLFPL 97

[Close]

BLAST of Sed0019156 vs. NCBI nr
Match: KAG2669707.1 (hypothetical protein I3760_14G045800 [Carya illinoinensis] >KAG6677817.1 hypothetical protein I3842_14G046200 [Carya illinoinensis] >KAG7946526.1 hypothetical protein I3843_14G044300 [Carya illinoinensis])

HSP 1 Score: 123.6 bits (309), Expect = 8.6e-25
Identity = 68/97 (70.10%), Postives = 76/97 (78.35%), Query Frame = 0


Query: 1  MLRREAMATSMCSSSTGLVGWCRPRRRSRRRRGSTIRLGNRRRGFCLGSRVVV------G 60
          MLRR ++  SM S+ST LVGWCRPRRR RRR+GSTIRLGN+RRG CLGSR VV      G
Sbjct: 1  MLRRGSLTISMLSNSTMLVGWCRPRRRLRRRKGSTIRLGNKRRGLCLGSRPVVQWGAMMG 60

Query: 61 PFRMLKRLIMDLAPNEKLIEAYY-SLLPFLRPTLFPL 91
          P RMLK++IMD+APN  LIEAYY SL P LRP LFPL
Sbjct: 61 PLRMLKKIIMDMAPNGPLIEAYYRSLTPLLRPQLFPL 97

[Close]

BLAST of Sed0019156 vs. NCBI nr
Match: XP_023874493.1 (uncharacterized protein LOC111987028 [Quercus suber])

HSP 1 Score: 119.4 bits (298), Expect = 1.6e-23
Identity = 64/97 (65.98%), Postives = 77/97 (79.38%), Query Frame = 0


Query: 1  MLRREAMATSMCSSSTGLVGWCRPRRRSRRRRGSTIRLGNRRRGFCLGSR------VVVG 60
          MLRR A+  SM S+ST L GWCRPRRR RRR+ STIRLGN+RRGFCL S+      V++G
Sbjct: 1  MLRRGALTISMLSNSTTLGGWCRPRRRLRRRKSSTIRLGNKRRGFCLASKPVVQWGVMMG 60

Query: 61 PFRMLKRLIMDLAPNEKLIEAYY-SLLPFLRPTLFPL 91
          P RMLK+ IM++APN +L+EAYY SL+PFLRP LFPL
Sbjct: 61 PLRMLKKFIMEMAPNGQLMEAYYSSLIPFLRPHLFPL 97

[Close]

BLAST of Sed0019156 vs. NCBI nr
Match: XP_030933787.1 (uncharacterized protein LOC115959506 [Quercus lobata])

HSP 1 Score: 116.7 bits (291), Expect = 1.0e-22
Identity = 63/97 (64.95%), Postives = 77/97 (79.38%), Query Frame = 0


Query: 1  MLRREAMATSMCSSSTGLVGWCRPRRRSRRRRGSTIRLGNRRRGFCLGSR------VVVG 60
          MLRR A+  SM S+ST L GWCRPRRR +RR+ STIRLGN+RRGFCL S+      V++G
Sbjct: 1  MLRRGALTISMLSNSTTLGGWCRPRRRLKRRKISTIRLGNKRRGFCLASKPVVQWGVMMG 60

Query: 61 PFRMLKRLIMDLAPNEKLIEAYY-SLLPFLRPTLFPL 91
          P RMLK+ IM++APN +L+EAYY SL+PFLRP LFPL
Sbjct: 61 PLRMLKKFIMEMAPNGQLMEAYYSSLIPFLRPHLFPL 97

[Close]

BLAST of Sed0019156 vs. NCBI nr
Match: XP_034916044.1 (uncharacterized protein LOC118049962 [Populus alba])

HSP 1 Score: 116.3 bits (290), Expect = 1.4e-22
Identity = 63/96 (65.62%), Postives = 73/96 (76.04%), Query Frame = 0


Query: 1  MLRREAMATSMCSSSTGLVGWCRPRRRSRRRRGSTIRLGNRRRGFCLGSR------VVVG 60
          ML+R A++ SM S+ST LVGWCR RRR RRRR  TIRLGN+RRGFCL SR      V+V 
Sbjct: 1  MLKRGAISVSMFSNSTVLVGWCRGRRRLRRRRVGTIRLGNKRRGFCLVSRPVIQWGVMVA 60

Query: 61 PFRMLKRLIMDLAPNEKLIEAYYSLLPFLRPTLFPL 91
          P RMLK +IMD+APN + IEAYY  LPFLRP +FPL
Sbjct: 61 PLRMLKNIIMDMAPNGRFIEAYYLSLPFLRPQIFPL 96

[Close]

BLAST of Sed0019156 vs. ExPASy TrEMBL
Match: A0A0A0K5B5 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G370760 PE=4 SV=1)

HSP 1 Score: 167.5 bits (423), Expect = 2.5e-38
Identity = 84/91 (92.31%), Postives = 88/91 (96.70%), Query Frame = 0


Query: 1  MLRREAMATSMCSSSTGLVGWCRPRRRSRRRRGSTIRLGNRRRGFCLGSRVVVGPFRMLK 60
          ML+REA+A SMCS+S GLVGWCRPRRRSRRRR STIRLGNRRRGFCLGSRVVVGPFRMLK
Sbjct: 1  MLKREALAISMCSNSGGLVGWCRPRRRSRRRRSSTIRLGNRRRGFCLGSRVVVGPFRMLK 60

Query: 61 RLIMDLAPNEKLIEAYYSLLPFLRPTLFPLS 92
          RLIM+LAPNEKLIEAYYSLLPFLRPTLFPLS
Sbjct: 61 RLIMELAPNEKLIEAYYSLLPFLRPTLFPLS 91

[Close]

BLAST of Sed0019156 vs. ExPASy TrEMBL
Match: A0A2I4F790 (uncharacterized protein LOC108996201 OS=Juglans regia OX=51240 GN=LOC108996201 PE=4 SV=1)

HSP 1 Score: 125.6 bits (314), Expect = 1.1e-25
Identity = 68/97 (70.10%), Postives = 78/97 (80.41%), Query Frame = 0


Query: 1  MLRREAMATSMCSSSTGLVGWCRPRRRSRRRRGSTIRLGNRRRGFCLGSR------VVVG 60
          MLRR ++  SM S+ST LVGWCRPRRR RRR+GSTIRLGN+RRG CLGSR      V++G
Sbjct: 1  MLRRGSLTISMLSNSTMLVGWCRPRRRLRRRKGSTIRLGNKRRGLCLGSRPVVQWGVMMG 60

Query: 61 PFRMLKRLIMDLAPNEKLIEAYY-SLLPFLRPTLFPL 91
          P RMLK++IMD+APN  LIEAYY SL PFLRP LFPL
Sbjct: 61 PLRMLKKIIMDMAPNGLLIEAYYRSLTPFLRPQLFPL 97

[Close]

BLAST of Sed0019156 vs. ExPASy TrEMBL
Match: A0A6A1WFY9 (Uncharacterized protein OS=Morella rubra OX=262757 GN=CJ030_MR2G024420 PE=4 SV=1)

HSP 1 Score: 115.9 bits (289), Expect = 8.6e-23
Identity = 61/97 (62.89%), Postives = 77/97 (79.38%), Query Frame = 0


Query: 1  MLRREAMATSMCSSSTGLVGWCRPRRRSRRRRGSTIRLGNRRRGFCLGSR------VVVG 60
          ML+R ++A SM S+ST L GWCR RRR RRR+GS+IRLGN+RRGFCLGS+      V++G
Sbjct: 3  MLKRGSLAVSMLSTSTVLAGWCRSRRRVRRRKGSSIRLGNKRRGFCLGSKPVVQWGVMMG 62

Query: 61 PFRMLKRLIMDLAPNEKLIEAYY-SLLPFLRPTLFPL 91
          P RMLK++IM +APN + IEAYY SL+P LRP +FPL
Sbjct: 63 PLRMLKKIIMGMAPNGQFIEAYYRSLVPLLRPQMFPL 99

[Close]

BLAST of Sed0019156 vs. ExPASy TrEMBL
Match: B9GQQ6 (Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_002G250100 PE=4 SV=1)

HSP 1 Score: 115.9 bits (289), Expect = 8.6e-23
Identity = 63/96 (65.62%), Postives = 72/96 (75.00%), Query Frame = 0


Query: 1  MLRREAMATSMCSSSTGLVGWCRPRRRSRRRRGSTIRLGNRRRGFCLGSR------VVVG 60
          ML+R A+  SM S+ST LVGWCR RRR RRRR  TIRLGN+RRGFCL SR      V+V 
Sbjct: 1  MLKRGAITVSMFSNSTVLVGWCRGRRRLRRRRVGTIRLGNKRRGFCLVSRPVIQWGVMVA 60

Query: 61 PFRMLKRLIMDLAPNEKLIEAYYSLLPFLRPTLFPL 91
          P RMLK +IMD+APN + IEAYY  LPFLRP +FPL
Sbjct: 61 PLRMLKNIIMDMAPNGRFIEAYYLSLPFLRPQIFPL 96

[Close]

BLAST of Sed0019156 vs. ExPASy TrEMBL
Match: A0A6J1BM94 (uncharacterized protein LOC110428993 OS=Herrania umbratica OX=108875 GN=LOC110428993 PE=4 SV=1)

HSP 1 Score: 112.8 bits (281), Expect = 7.3e-22
Identity = 63/98 (64.29%), Postives = 73/98 (74.49%), Query Frame = 0


Query: 1  MLRREAMATSMCSSSTGLVGWCRPRRRSRRRRGSTIRLGN--RRRGFCLGSR------VV 60
          ML+R +M  SM  +ST LVGWCR RRR RRRR STIRLGN  +RRGFCLGSR      V+
Sbjct: 1  MLKRGSMTISMFPNSTVLVGWCRGRRRLRRRRRSTIRLGNKAKRRGFCLGSRPVVQWGVM 60

Query: 61 VGPFRMLKRLIMDLAPNEKLIEAYYSLLPFLRPTLFPL 91
          VGP RMLK++IM++ P  K I+AYY  LPFLRP LFPL
Sbjct: 61 VGPLRMLKKIIMEITPKGKWIQAYYMYLPFLRPQLFPL 98

[Close]

BLAST of Sed0019156 vs. TAIR 10
Match: AT3G07425.1 (unknown protein; Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). )

HSP 1 Score: 47.4 bits (111), Expect = 7.3e-06
Identity = 38/102 (37.25%), Postives = 55/102 (53.92%), Query Frame = 0


Query: 1  MLRREAMATSMCSSSTGLVGWCRPRRRSRRRRGSTIRLGNRRRGFCLGS--------RVV 60
          M+RR A+     SS      W + RR+ +R     +RLGNRRRGF +G         R+ 
Sbjct: 1  MVRRNAV--HAMSSLPSRSWWPQQRRKGKR---VVVRLGNRRRGFLVGPPRMVMQRWRMN 60

Query: 61 VG-PFRMLKRLIMDL---APNEKLIEAYYSLLPFLRPTLFPL 91
          +G P +M++ +I+ +     N K ++AY   LP LRP LFPL
Sbjct: 61 MGKPMKMMRSIILGILSNGGNVKFLDAYLWSLPILRPHLFPL 97

The following BLAST results are available for this feature:

BLAST of Sed0019156 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_018827516.1	2.3e-25	70.10	uncharacterized protein LOC108996201 [Juglans regia] >XP_040993736.1 uncharacter...	[more]
KAG2669707.1	8.6e-25	70.10	hypothetical protein I3760_14G045800 [Carya illinoinensis] >KAG6677817.1 hypothe...	[more]
XP_023874493.1	1.6e-23	65.98	uncharacterized protein LOC111987028 [Quercus suber]	[more]
XP_030933787.1	1.0e-22	64.95	uncharacterized protein LOC115959506 [Quercus lobata]	[more]
XP_034916044.1	1.4e-22	65.63	uncharacterized protein LOC118049962 [Populus alba]	[more]

BLAST of Sed0019156 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Sed0019156 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K5B5	2.5e-38	92.31	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G370760 PE=4 SV=1	[more]
A0A2I4F790	1.1e-25	70.10	uncharacterized protein LOC108996201 OS=Juglans regia OX=51240 GN=LOC108996201 P...	[more]
A0A6A1WFY9	8.6e-23	62.89	Uncharacterized protein OS=Morella rubra OX=262757 GN=CJ030_MR2G024420 PE=4 SV=1	[more]
B9GQQ6	8.6e-23	65.63	Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_002G250100 PE=4 ...	[more]
A0A6J1BM94	7.3e-22	64.29	uncharacterized protein LOC110428993 OS=Herrania umbratica OX=108875 GN=LOC11042...	[more]

BLAST of Sed0019156 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G07425.1	7.3e-06	37.25	unknown protein; Has 35333 Blast hits to 34131 proteins in 2444 species: Archae ...	[more]

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0019156.1	Sed0019156.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016020	membrane